ALIGNMENT RESULTS FOR sequence1:

hhhits

Query sequence1 (seq=GAMGSPIRKK...EMATRAALQA Len=184 Neff=11.2085)
Parameters db=PDB
 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 5JCP_A Arf-GAP with Rho-GAP do  99.8 8.3E-24 9.6E-29  159.9   0.0  179    5-183   240-418 (419)
  2 6V6U_A Transforming protein Rh  99.9 1.1E-27 1.3E-32  161.4   0.0  182    3-184     2-183 (183)
  3 3LW8_A Transforming protein Rh  99.9 7.7E-28   9E-33  161.8   0.0  183    2-184     3-185 (185)
  4 4MIT_A Rho family GTPase (E.C.  99.9 1.1E-26 1.3E-31  157.0   0.0  180    4-183     6-185 (186)
  5 4MIT_D Rho family GTPase (E.C.  99.9 1.1E-26 1.3E-31  157.0   0.0  180    4-183     6-185 (186)
  6 3SEA_A GTP-binding protein Rhe  99.9 7.4E-26 8.6E-31  150.8   0.0  164    6-182     2-166 (167)
  7 6BCB_F Transforming protein Rh  99.8 1.1E-25 1.2E-30  151.5   0.0  181    4-184     5-185 (185)
  8 6JMG_A DnaJ homolog subfamily   99.8 1.1E-25 1.3E-30  161.8   0.0  165    5-182    13-183 (281)
  9 2CLS_A RHO-RELATED GTP-BINDING  99.8 3.8E-25 4.4E-30  150.8   0.0  181    3-183     6-187 (198)
 10 2ATX_B small GTP binding prote  99.8 4.2E-25 4.9E-30  149.5   0.0  179    5-183    15-193 (194)
 11 3Q3J_B Plexin-A2, Rho-related   99.8 6.5E-25 7.6E-30  151.8   0.0  179    5-183    24-203 (214)
 12 3X1X_A Ras-related protein Rap  99.8   1E-24 1.2E-29  144.3   0.0  164    7-182     2-166 (167)
 13 2A5J_A Ras-related protein Rab  99.8 1.1E-24 1.3E-29  148.1   0.0  168    3-183    16-184 (191)
 14 4DJT_B GTP-binding nuclear pro  99.8 1.2E-24 1.4E-29  151.2   0.0  166    3-182     6-174 (218)
 15 2OV2_D Ras-related C3 botulinu  99.8 1.4E-24 1.6E-29  144.2   0.0  177    6-182     2-178 (179)
 16 3REF_B Rho-like small GTPase;   99.8 1.6E-24 1.9E-29  147.0   0.0  169    5-183    20-188 (194)
 17 1GWN_C RHO-RELATED GTP-BINDING  99.8 1.6E-24 1.9E-29  148.6   0.0  180    4-183    24-204 (205)
 18 6HH2_A Ras-related protein Rab  99.8 1.7E-24 1.9E-29  145.7   0.0  166    4-183     6-178 (180)
 19 3X1Z_A Ras-related protein Rap  99.8 2.1E-24 2.4E-29  142.8   0.0  164    7-182     2-166 (167)
 20 4U5X_A OsRac1; Small GTPase, R  99.8 2.6E-24   3E-29  143.1   0.0  175    6-182     3-177 (178)
 21 2Q3H_A Ras homolog gene family  99.8 2.6E-24   3E-29  146.8   0.0  180    4-183    16-195 (201)
 22 1M7B_A Rho-related GTP-binding  99.8 3.5E-24   4E-29  144.0   0.0  180    4-183     3-183 (184)
 23 2GF0_B GTP-binding protein Di-  99.8 3.5E-24 4.1E-29  146.5   0.0  166    3-182     3-170 (199)
 24 2REX_D Plexin-B1, Rho-related   99.8 3.6E-24 4.1E-29  145.5   0.0  181    3-183     5-186 (197)
 25 3REG_B Rho-like small GTPase;   99.8 3.8E-24 4.4E-29  144.8   0.0  169    5-183    20-188 (194)
 26 2FN4_A Ras-related protein R-R  99.8 4.1E-24 4.7E-29  143.8   0.0  167    4-183     5-172 (181)
 27 5C2K_A Transforming protein Rh  99.8 4.4E-24 5.1E-29  161.2   0.0  180    4-183     8-187 (415)
 28 4YON_B pREX1, Rac1(G12V); Prot  99.8 4.5E-24 5.3E-29  142.0   0.0  176    6-181     3-178 (179)
 29 1GUA_A RAP1A, C-RAF1, PHOSPHOA  99.8 4.8E-24 5.6E-29  140.8   0.0  164    7-182     2-166 (167)
 30 4GZL_A Ras-related C3 botulinu  99.8 4.9E-24 5.7E-29  146.3   0.0  178    4-181    26-203 (204)
 31 5VCU_A Ras-related c3 botulinu  99.8 5.3E-24 6.1E-29  145.7   0.0  177    6-182     9-185 (208)
 32 4RKE_A GH01619p; GTP hydrolysi  99.8 5.5E-24 6.4E-29  142.2   0.0  167    4-183     6-173 (176)
 33 5LDD_C Mon1, Ccz1, Rab small m  99.8 5.9E-24 6.8E-29  146.6   0.0  168    5-183     7-179 (207)
 34 5YOZ_A Rab5a; Rab, GTPase, ear  99.8 6.1E-24 7.1E-29  141.9   0.0  166    3-180    10-176 (177)
 35 2V55_D RHO-ASSOCIATED PROTEIN   99.8 6.3E-24 7.3E-29  144.8   0.0  179    5-183    20-199 (200)
 36 3B13_B Dedicator of cytokinesi  99.8 7.6E-24 8.8E-29  141.7   0.0  178    4-181     6-183 (184)
 37 5UB8_A Likely rab family GTP-b  99.8 8.2E-24 9.5E-29  147.3   0.0  164    6-182    13-177 (222)
 38 5DIS_B Exportin-1, GTP-binding  99.8 8.3E-24 9.7E-29  141.5   0.0  161    7-183     2-163 (172)
 39 6P0I_B Ras-related protein Ral  99.8 8.5E-24 9.9E-29  143.1   0.0  167    4-183    10-177 (186)
 40 1Z0F_A RAB14, member RAS oncog  99.8 9.1E-24 1.1E-28  141.6   0.0  167    4-183    11-178 (179)
 41 1MH1_A RAC1, PHOSPHOAMINOPHOSP  99.8 9.7E-24 1.1E-28  141.1   0.0  178    6-183     3-180 (186)
 42 2GF0_C GTP-binding protein Di-  99.8 1.2E-23 1.4E-28  143.9   0.0  166    3-182     3-170 (199)
 43 3BWD_D Rac-like GTP-binding pr  99.8 1.3E-23 1.5E-28  140.8   0.0  179    3-183     3-181 (182)
 44 4LHW_B Ras-related protein Rab  99.8 1.3E-23 1.5E-28  140.6   0.0  166    5-183     3-169 (174)
 45 2J1L_A RHO-RELATED GTP-BINDING  99.8 1.4E-23 1.6E-28  144.9   0.0  179    5-183    31-209 (214)
 46 2J0V_B RAC-LIKE GTP-BINDING PR  99.8 1.4E-23 1.6E-28  144.3   0.0  177    3-183     4-180 (212)
 47 3RAP_R G PROTEIN RAP2A; G PROT  99.8 1.5E-23 1.7E-28  138.4   0.0  165    7-184     2-167 (167)
 48 2KE5_A Ras-related protein Ral  99.8 1.5E-23 1.7E-28  140.0   0.0  164    7-183     2-167 (174)
 49 6FF8_A Ras-related protein Rab  99.8 1.8E-23 2.1E-28  140.7   0.0  169    3-183     3-177 (181)
 50 1D5C_A RAB6 GTPASE; G-PROTEIN,  99.8 1.9E-23 2.2E-28  137.7   0.0  160    8-180     1-161 (162)
 51 6L6O_A Rab5a; Intracellular tr  99.8 2.1E-23 2.4E-28  139.2   0.0  165    4-180    11-176 (177)
 52 1YU9_A GTP-binding protein; Ra  99.8 2.3E-23 2.6E-28  139.0   0.0  168    3-183     6-174 (175)
 53 4M8N_F PlexinC1 Intracellular   99.8 2.4E-23 2.8E-28  141.6   0.0  167    5-183     3-170 (199)
 54 4M8N_G PlexinC1 Intracellular   99.8 2.4E-23 2.8E-28  141.6   0.0  167    5-183     3-170 (199)
 55 2EW1_A Ras-related protein Rab  99.8 2.7E-23 3.1E-28  142.6   0.0  166    4-182    22-188 (201)
 56 2FG5_A Ras-related protein Rab  99.8   3E-23 3.5E-28  141.4   0.0  166    3-182    18-185 (192)
 57 4D0G_A RAS-RELATED PROTEIN RAB  99.8   3E-23 3.5E-28  137.9   0.0  168    3-183     1-169 (175)
 58 3TKL_A Ras-related protein Rab  99.8 3.2E-23 3.7E-28  141.3   0.0  165    5-182    13-178 (196)
 59 1R2Q_A Ras-related protein Rab  99.8 3.2E-23 3.7E-28  137.3   0.0  165    5-182     3-168 (170)
 60 2WWX_A RAS-RELATED PROTEIN RAB  99.8 3.3E-23 3.9E-28  138.4   0.0  167    3-182     3-170 (175)
 61 1KY3_A GTP-BINDING PROTEIN YPT  99.8 3.3E-23 3.9E-28  138.7   0.0  169    4-183     4-178 (182)
 62 3KKQ_A Ras-related protein M-R  99.8 3.5E-23 4.1E-28  140.0   0.0  166    5-183    15-182 (183)
 63 3SFV_A Ras-related protein Rab  99.8 3.6E-23 4.2E-28  139.4   0.0  166    5-183    13-179 (181)
 64 1KY2_A GTP-BINDING PROTEIN YPT  99.8 3.7E-23 4.2E-28  138.5   0.0  169    4-183     4-178 (182)
 65 7BTD_A GTP-binding protein Rhe  99.8 3.8E-23 4.4E-28  137.7   0.0  166    4-182     2-168 (177)
 66 1S8F_B Ras-related protein Rab  99.8 4.3E-23   5E-28  138.2   0.0  168    3-183     4-176 (177)
 67 3MJH_A Ras-related protein Rab  99.8 4.5E-23 5.3E-28  136.2   0.0  164    6-182     3-167 (168)
 68 5SZH_B MICAL C-terminal-like p  99.8 4.8E-23 5.5E-28  141.3   0.0  166    5-183     7-173 (203)
 69 4KLZ_A GTP-binding protein Rit  99.8 4.9E-23 5.7E-28  137.2   0.0  165    6-183     3-168 (173)
 70 5UQW_B GTPase KRas (E.C.3.6.5.  99.8 5.6E-23 6.5E-28  139.6   0.0  167    3-183    18-185 (189)
 71 4DRZ_A Ras-related protein Rab  99.8 6.4E-23 7.4E-28  139.3   0.0  167    4-183    26-193 (196)
 72 6HDU_A Ras-related protein Rab  99.8 7.7E-23 8.9E-28  137.9   0.0  170    3-183     7-182 (184)
 73 3OES_A GTPase RhebL1; small gt  99.8 7.7E-23   9E-28  139.4   0.0  168    3-183    19-187 (201)
 74 6BSX_B GTP-binding protein Rhe  99.8 8.4E-23 9.7E-28  136.4   0.0  167    3-182     2-169 (178)
 75 3RWO_B GTP-binding protein YPT  99.8   9E-23   1E-27  137.6   0.0  167    4-183     6-173 (185)
 76 2IWR_A CENTAURIN GAMMA 1; ANK   99.8   9E-23   1E-27  136.7   0.0  164    3-183     2-169 (178)
 77 1EK0_A GTP-BINDING PROTEIN YPT  99.8 9.3E-23 1.1E-27  135.3   0.0  166    7-182     2-168 (170)
 78 5CM8_B Ral guanine nucleotide   99.8 9.6E-23 1.1E-27  139.9   0.0  165    5-182    10-175 (203)
 79 4KU4_A Ras-3 from Cryphonectri  99.8 1.1E-22 1.3E-27  139.4   0.0  166    5-183    11-195 (206)
 80 1ZJ6_A ADP-ribosylation factor  99.8 1.3E-22 1.5E-27  137.9   0.0  163    5-181    13-176 (187)
 81 5Z2M_A Oxysterol-binding prote  99.8 1.3E-22 1.5E-27  135.0   0.0  168    3-183     3-175 (176)
 82 5SZI_A Ras-related protein Rab  99.8 1.4E-22 1.7E-27  139.0   0.0  168    2-182     4-172 (209)
 83 4RKF_B Ras-related protein Rab  99.8 1.4E-22 1.7E-27  137.2   0.0  165    5-182    20-185 (190)
 84 1Z08_A Ras-related protein Rab  99.8 1.5E-22 1.7E-27  134.5   0.0  166    5-183     3-169 (170)
 85 1G16_B RAS-RELATED PROTEIN SEC  99.8 1.6E-22 1.9E-27  134.4   0.0  162    7-182     2-164 (170)
 86 1G17_B RAS-RELATED PROTEIN SEC  99.8 1.6E-22 1.9E-27  134.4   0.0  162    7-182     2-164 (170)
 87 1ZBD_A RABPHILIN-3A, GUANOSINE  99.8 1.6E-22 1.9E-27  138.5   0.0  167    2-182     2-170 (203)
 88 1WMS_B Ras-related protein Rab  99.8 1.7E-22 1.9E-27  135.4   0.0  166    5-183     4-174 (177)
 89 2HUP_B Crystal structure of hu  99.8 1.9E-22 2.2E-27  137.8   0.0  167    4-182    25-192 (201)
 90 3C5C_B RAS-like protein 12; ra  99.8 1.9E-22 2.3E-27  136.4   0.0  167    3-183    16-186 (187)
 91 2GF9_A Ras-related protein Rab  99.8   2E-22 2.3E-27  136.7   0.0  168    3-183    17-185 (189)
 92 1X1R_A Ras-related protein M-R  99.8   2E-22 2.4E-27  135.6   0.0  166    5-183    10-177 (178)
 93 4FMC_B ROrf2, Ras-related prot  99.8 2.1E-22 2.4E-27  133.4   0.0  165    5-182     3-168 (171)
 94 2P5S_B RAS and EF-hand domain   99.8 2.1E-22 2.4E-27  138.1   0.0  170    5-182    25-196 (199)
 95 1Z0J_A Ras-related protein Rab  99.8 2.1E-22 2.4E-27  133.5   0.0  165    6-183     4-169 (170)
 96 2ERY_B Ras-related protein R-R  99.7 2.2E-22 2.6E-27  134.0   0.0  164    6-182     3-167 (172)
 97 6IF3_B Arf-GAP with coiled-coi  99.7 2.5E-22   3E-27  135.5   0.0  166    3-182     9-175 (186)
 98 1KAO_A RAP2A, GUANOSINE-5'-DIP  99.7 2.7E-22 3.1E-27  132.3   0.0  164    7-183     2-166 (167)
 99 1Z08_C Ras-related protein Rab  99.7   3E-22 3.5E-27  132.6   0.0  166    5-183     3-169 (170)
100 2HUP_A Crystal structure of hu  99.7 3.3E-22 3.8E-27  136.7   0.0  168    4-183    25-193 (201)
101 2X77_A ADP-RIBOSYLATION FACTOR  99.7 3.3E-22 3.9E-27  135.9   0.0  165    4-182    18-183 (189)
102 6IF2_B Ras-related protein Rab  99.7 3.8E-22 4.4E-27  134.7   0.0  167    3-183     9-176 (186)
103 1WA5_A GTP-BINDING NUCLEAR PRO  99.7 3.8E-22 4.4E-27  133.1   0.0  164    4-183     6-170 (176)
104 3NKV_A Ras-related protein Rab  99.7 3.9E-22 4.5E-27  132.9   0.0  165    5-182     6-171 (175)
105 4HLQ_B TBC1 domain family memb  99.7 3.9E-22 4.5E-27  132.9   0.0  165    5-182     6-171 (175)
106 2ERX_A GTP-binding protein Di-  99.7 3.9E-22 4.5E-27  132.6   0.0  163    7-182     2-166 (172)
107 2CE2_X GTPASE HRAS; SIGNALING   99.7   4E-22 4.7E-27  131.4   0.0  163    7-183     2-165 (166)
108 1VG8_C Ras-related protein Rab  99.7 4.1E-22 4.7E-27  137.1   0.0  167    4-183     4-175 (207)
109 2BCG_Y Secretory pathway GDP d  99.7 4.5E-22 5.3E-27  137.0   0.0  166    3-182     3-170 (206)
110 1Z2A_A Ras-related protein Rab  99.7 4.7E-22 5.5E-27  132.0   0.0  164    6-183     3-167 (168)
111 2YC4_C INTRAFLAGELLAR TRANSPOR  99.7 4.8E-22 5.5E-27  136.4   0.0  168    4-183    16-192 (208)
112 1Z22_A Ras-related protein Rab  99.7 4.9E-22 5.7E-27  132.1   0.0  164    6-183     3-167 (168)
113 5JCZ_I Ras-related protein Rab  99.7 4.9E-22 5.7E-27  132.3   0.0  167    4-183     9-176 (179)
114 3BBP_C Ras-related protein Rab  99.7   5E-22 5.9E-27  137.2   0.0  163    6-181    14-177 (211)
115 3T1T_A Gliding protein mglA (E  99.7 5.1E-22 5.9E-27  135.2   0.0  165    4-183    10-192 (198)
116 4QXA_A Ras-related protein Rab  99.7 5.1E-22   6E-27  135.7   0.0  169    2-183     2-175 (208)
117 1UKV_Y Secretory pathway GDP d  99.7 6.2E-22 7.2E-27  136.3   0.0  166    4-182     4-170 (206)
118 3T1O_B Gliding protein mglA (E  99.7 6.5E-22 7.6E-27  134.8   0.0  165    4-183    10-192 (198)
119 3T1T_C Gliding protein mglA (E  99.7 6.5E-22 7.6E-27  134.8   0.0  165    4-183    10-192 (198)
120 4M9Q_B ARF-like GTPase (E.C.3.  99.7 6.8E-22 7.9E-27  138.4   0.0  161    6-181     2-169 (227)
121 3GJ0_B GTP-binding nuclear pro  99.7 6.8E-22 7.9E-27  137.3   0.0  164    3-182    10-174 (221)
122 4ILE_A ADP-ribosylation factor  99.7 6.9E-22   8E-27  133.7   0.0  164    5-181    19-183 (184)
123 2YC2_D INTRAFLAGELLAR TRANSPOR  99.7 7.4E-22 8.6E-27  135.5   0.0  168    4-183    16-192 (208)
124 6VBV_3 Bardet-Biedl syndrome 1  99.7 7.7E-22 8.9E-27  133.5   0.0  166    5-183    14-183 (186)
125 3DOE_A ADP-ribosylation factor  99.7 8.2E-22 9.5E-27  134.4   0.0  165    4-182    12-177 (192)
126 2WKP_A NPH1-1, RAS-RELATED C3   99.7 8.9E-22   1E-26  144.0   0.0  179    5-183   152-330 (332)
127 1Z6Y_A ADP-ribosylation factor  99.7 9.5E-22 1.1E-26  132.3   0.0  165    4-182    12-177 (179)
128 6O62_A Ras-related protein SEC  99.7 9.8E-22 1.1E-26  132.0   0.0  165    5-182    11-176 (184)
129 3IHW_A CENTG3; ras, centaurin,  99.7 9.9E-22 1.1E-26  132.8   0.0  163    5-183    17-180 (184)
130 5KUT_B Mitochondrial Rho GTPas  99.7   1E-21 1.2E-26  133.6   0.0  162    4-182     5-168 (189)
131 6HUF_H Ras-related protein Rab  99.7 1.1E-21 1.2E-26  131.9   0.0  166    5-183     6-173 (182)
132 6HUF_P Ras-related protein Rab  99.7 1.1E-21 1.2E-26  131.9   0.0  166    5-183     6-173 (182)
133 2MMG_A GTP-binding nuclear pro  99.7 1.1E-21 1.3E-26  135.9   0.0  165    3-183     5-170 (216)
134 5KUT_A Mitochondrial Rho GTPas  99.7 1.1E-21 1.3E-26  133.3   0.0  162    4-182     5-168 (189)
135 2X77_B ADP-RIBOSYLATION FACTOR  99.7 1.2E-21 1.4E-26  133.3   0.0  165    4-182    18-183 (189)
136 2Y8E_A RAB-PROTEIN 6; HYDROLAS  99.7 1.2E-21 1.4E-26  131.4   0.0  165    5-182    11-176 (179)
137 4CZ2_C RAS-RELATED PROTEIN RAB  99.7 1.2E-21 1.4E-26  136.5   0.0  167    4-182    26-198 (230)
138 2BME_A RAS-RELATED PROTEIN RAB  99.7 1.2E-21 1.4E-26  132.3   0.0  167    4-183     6-173 (186)
139 5C1S_A Small GTPase EhRabX3; P  99.7 1.2E-21 1.4E-26  147.0   0.0  161    6-182   220-380 (391)
140 4HAT_A GTP-binding nuclear pro  99.7 1.2E-21 1.4E-26  135.5   0.0  164    3-182     5-169 (216)
141 2O52_A Crystal structure of hu  99.7 1.3E-21 1.5E-26  133.3   0.0  168    3-183    20-188 (200)
142 4CZ2_B RAS-RELATED PROTEIN RAB  99.7 1.3E-21 1.5E-26  136.3   0.0  167    4-182    26-198 (230)
143 2WKQ_A NPH1-1, RAS-RELATED C3   99.7 1.4E-21 1.6E-26  143.1   0.0  178    6-183   153-330 (332)
144 1O3Y_A ADP-ribosylation factor  99.7 1.4E-21 1.6E-26  129.6   0.0  161    8-182     2-163 (166)
145 3DZ8_A Crystal structure of hu  99.7 1.4E-21 1.6E-26  132.2   0.0  167    4-183    19-186 (191)
146 3RAB_A RAB3A; G PROTEIN, VESIC  99.7 1.4E-21 1.7E-26  129.1   0.0  164    6-182     3-167 (169)
147 3CPJ_B Rab GDP-dissociation in  99.7 1.5E-21 1.7E-26  135.6   0.0  167    4-183     9-176 (223)
148 6S5H_A Ras-related protein Rab  99.7 1.5E-21 1.7E-26  133.8   0.0  170    3-183     5-180 (208)
149 6BOF_B GTPase KRas; HYDROLASE,  99.7 1.5E-21 1.7E-26  129.2   0.0  162    8-183     2-164 (168)
150 5WDQ_A GTPase HRas (E.C.3.6.5.  99.7 1.5E-21 1.7E-26  129.3   0.0  165    5-183     4-169 (170)
151 5XC5_A Probable Rab-related GT  99.7 1.5E-21 1.8E-26  130.6   0.0  165    6-182     3-169 (176)
152 1OIX_A RAS-RELATED PROTEIN RAB  99.7 1.6E-21 1.9E-26  132.3   0.0  165    4-181    25-190 (191)
153 2IL1_A predicted human GTPase   99.7 1.7E-21 1.9E-26  132.0   0.0  169    3-183    21-190 (192)
154 2BOV_A RAS-RELATED PROTEIN RAL  99.7 1.8E-21 2.1E-26  133.9   0.0  165    5-182    11-176 (206)
155 6IY1_C Ras-related protein Rab  99.7 1.8E-21 2.1E-26  127.1   0.0  162    7-181     2-164 (165)
156 2ATV_A RAS-like estrogen-regul  99.7 1.9E-21 2.2E-26  132.5   0.0  166    3-183    23-191 (196)
157 3BC1_A Ras-related protein Rab  99.7   2E-21 2.3E-26  132.3   0.0  165    5-182     8-184 (195)
158 2H17_A Structure of human ADP-  99.7   2E-21 2.3E-26  131.4   0.0  162    5-180    18-180 (181)
159 6S5F_A Ras-related protein Rab  99.7 2.1E-21 2.4E-26  132.8   0.0  168    3-183     4-174 (208)
160 6H17_A Mutual gliding-motility  99.7 2.1E-21 2.4E-26  132.6   0.0  163    5-183     9-189 (201)
161 2G6B_A Ras-related protein Rab  99.7 2.1E-21 2.5E-26  130.5   0.0  165    5-182     7-173 (180)
162 5XCO_A B-cell lymphoma 6 prote  99.7 2.1E-21 2.5E-26  128.8   0.0  163    6-182     3-166 (171)
163 2FA9_B GTP-binding protein SAR  99.7 2.2E-21 2.5E-26  131.9   0.0  172    5-181    13-188 (189)
164 6V5L_A GTPase KRas; KRas, allo  99.7 2.3E-21 2.6E-26  128.0   0.0  163    7-183     2-165 (169)
165 5E95_A Mb(NS1), GTPase HRas; H  99.7 2.9E-21 3.3E-26  127.6   0.0  164    6-183     3-167 (168)
166 2GZH_A Ras-related protein Rab  99.7 2.9E-21 3.4E-26  128.0   0.0  165    4-181     7-172 (173)
167 4V0L_A ARF-LIKE SMALL GTPASE;   99.7 2.9E-21 3.4E-26  128.3   0.0  165    4-181     2-168 (169)
168 6IA7_B Intraflagellar transpor  99.7 2.9E-21 3.4E-26  134.2   0.0  168    2-182     3-197 (223)
169 6IAE_A Intraflagellar transpor  99.7 2.9E-21 3.4E-26  134.2   0.0  168    2-182     3-197 (223)
170 2NZJ_B GTP-binding protein REM  99.7 3.1E-21 3.6E-26  128.1   0.0  165    6-183     2-169 (175)
171 3Q85_A GTP-binding protein REM  99.7 3.2E-21 3.7E-26  127.3   0.0  163    8-183     2-167 (169)
172 1F6B_A SAR1; GTPASES, N-TERMIN  99.7 3.2E-21 3.7E-26  132.2   0.0  172    5-181    22-197 (198)
173 3Q85_B GTP-binding protein REM  99.7 3.3E-21 3.8E-26  127.1   0.0  163    8-183     2-167 (169)
174 2ZET_A Ras-related protein Rab  99.7 3.3E-21 3.8E-26  132.3   0.0  164    6-182     9-184 (203)
175 5XC3_A Probable Rab-related GT  99.7 3.7E-21 4.3E-26  128.9   0.0  165    6-182     3-169 (176)
176 6ZAY_A Ras-related protein Rab  99.7   4E-21 4.7E-26  130.8   0.0  165    5-182     4-174 (192)
177 6D71_A Mitochondrial Rho GTPas  99.7 4.1E-21 4.8E-26  128.8   0.0  163    7-183     9-174 (186)
178 6D71_B Mitochondrial Rho GTPas  99.7 4.2E-21 4.9E-26  128.8   0.0  163    6-182     8-173 (186)
179 2NZJ_A GTP-binding protein REM  99.7 4.4E-21 5.1E-26  127.6   0.0  165    6-183     2-169 (175)
180 2F9L_A RAB11B, member RAS onco  99.7 4.4E-21 5.2E-26  130.9   0.0  165    5-182     2-167 (199)
181 2F9M_A RAB11B, member RAS onco  99.7 4.4E-21 5.2E-26  130.9   0.0  165    5-182     2-167 (199)
182 1MOZ_B ADP-ribosylation factor  99.7   5E-21 5.8E-26  129.1   0.0  164    5-182    15-179 (183)
183 2EFE_D Similarity to vacuolar   99.7 5.1E-21 5.9E-26  128.2   0.0  166    4-182     8-174 (181)
184 2EFH_B Similarity to vacuolar   99.7 5.1E-21 5.9E-26  128.2   0.0  166    4-182     8-174 (181)
185 4G01_B Vacuolar protein sortin  99.7 5.1E-21 5.9E-26  128.2   0.0  166    4-182     8-174 (181)
186 6IAN_E Intraflagellar transpor  99.7 5.2E-21   6E-26  132.8   0.0  165    6-183     3-195 (220)
187 2G77_B GTPase-activating prote  99.7 5.4E-21 6.2E-26  130.4   0.0  167    4-183    25-197 (198)
188 3E5H_A Crystal Structure of Ra  99.7 5.6E-21 6.5E-26  127.4   0.0  166    5-183     3-173 (178)
189 1ZD9_A ADP-ribosylation factor  99.7 5.6E-21 6.5E-26  129.2   0.0  166    5-183    19-185 (188)
190 6EKK_C DENN domain-containing   99.7 5.9E-21 6.9E-26  127.1   0.0  165    4-182     2-167 (176)
191 2KSQ_A ADP-ribosylation factor  99.7   6E-21 6.9E-26  128.6   0.0  166    4-183    13-179 (181)
192 1R8S_A ADP-ribosylation factor  99.7 6.3E-21 7.3E-26  126.2   0.0  161    9-183     1-162 (164)
193 5YMX_A Mutual gliding-motility  99.7 6.9E-21   8E-26  129.9   0.0  163    5-183     9-189 (203)
194 4ZI2_A Arl3 (E.C.3.6.5.2.), CC  99.7 7.1E-21 8.2E-26  129.3   0.0  164    5-182    14-178 (190)
195 5DE3_A ARF-like GTPase; G-prot  99.7 8.6E-21   1E-25  126.2   0.0  160    9-182     1-161 (169)
196 3Q7Q_A GTP-binding protein RAD  99.7 9.1E-21 1.1E-25  125.3   0.0  162    8-183     2-164 (166)
197 1KSH_A arf-like protein 2, RET  99.7 9.2E-21 1.1E-25  128.3   0.0  165    4-182    14-179 (186)
198 5U4U_A MGC81300 protein; GTPas  99.7 9.3E-21 1.1E-25  127.9   0.0  153    3-182     3-174 (178)
199 5HZH_A Rac1 containing C450A m  99.7 9.4E-21 1.1E-25  137.9   0.0  127   57-183   204-330 (332)
200 3BC1_E Ras-related protein Rab  99.7 9.8E-21 1.1E-25  128.7   0.0  165    5-182     8-184 (195)
201 3BH7_A ADP-ribosylation factor  99.7   1E-20 1.2E-25  124.6   0.0  161    6-180     2-163 (164)
202 2FH5_B Signal recognition part  99.7 1.2E-20 1.4E-25  130.5   0.0  176    4-180     3-213 (214)
203 2HXS_A Ras-related protein Rab  99.7 1.2E-20 1.4E-25  125.6   0.0  165    5-183     3-173 (178)
204 2F7S_A Ras-related protein Rab  99.7 1.4E-20 1.6E-25  129.9   0.0  167    3-182    20-198 (217)
205 3Q72_A GTP-binding protein RAD  99.7 1.4E-20 1.6E-25  124.1   0.0  162    8-183     2-164 (166)
206 3Q7Q_B GTP-binding protein RAD  99.7 1.4E-20 1.6E-25  124.1   0.0  162    8-183     2-164 (166)
207 5C1T_B Small GTPase EhRabX3; P  99.7 1.4E-20 1.7E-25  141.4   0.0  161    6-182   220-380 (391)
208 1M2O_B protein transport prote  99.7 1.5E-20 1.7E-25  127.6   0.0  169    5-180    20-189 (190)
209 4V0K_B ARF-LIKE SMALL GTPASE;   99.7 1.5E-20 1.8E-25  124.9   0.0  164    5-181     3-168 (169)
210 1FZQ_A ADP-RIBOSYLATION FACTOR  99.7 1.7E-20   2E-25  125.7   0.0  165    5-183    13-178 (181)
211 4CYM_B RAS-RELATED PROTEIN RAB  99.7 1.8E-20   2E-25  130.7   0.0  166    5-182    27-198 (230)
212 6FUF_B Rhodopsin, Guanine nucl  99.7 1.8E-20 2.1E-25  128.8   0.0  179    5-183    13-205 (214)
213 1Z06_A Ras-related protein Rab  99.7 1.9E-20 2.2E-25  126.2   0.0  167    4-183    16-188 (189)
214 3CPH_A Rab GDP-dissociation in  99.7 1.9E-20 2.2E-25  128.7   0.0  165    5-183    17-182 (213)
215 1R4A_B ADP-ribosylation factor  99.7 2.2E-20 2.6E-25  123.4   0.0  161    8-182     2-163 (165)
216 4BAS_A ADP-RIBOSYLATION FACTOR  99.7 2.5E-20 2.9E-25  126.7   0.0  169    4-183    13-189 (199)
217 3CLV_A Rab5 protein, putative;  99.7 2.6E-20   3E-25  127.9   0.0  165    3-183     2-204 (208)
218 4DKX_A Ras-related protein Rab  99.7   3E-20 3.5E-25  128.3   0.0  166    4-182     9-175 (216)
219 2QTV_B Protein transport prote  99.7 3.1E-20 3.6E-25  122.9   0.0  164    9-179     2-166 (167)
220 6GNI_B Protein transport prote  99.7 3.3E-20 3.8E-25  122.9   0.0  164    9-179     2-166 (167)
221 1UPT_E ADP-RIBOSYLATION FACTOR  99.6 4.1E-20 4.7E-25  123.1   0.0  165    4-182     3-168 (171)
222 6SUR_E Ras-related protein Rab  99.6 4.1E-20 4.8E-25  122.9   0.0  165    6-183     2-172 (173)
223 6A8D_A Gamma glutamyl transpep  99.6 4.2E-20 4.9E-25  125.3   0.0  165    5-183    20-185 (192)
224 5G53_C ADENOSINE RECEPTOR A2A,  99.6 4.4E-20 5.1E-25  128.6   0.0  177    5-183    13-220 (229)
225 2H18_A ADP-ribosylation factor  99.6 4.4E-20 5.1E-25  125.7   0.0  164    5-181    28-192 (193)
226 6VIK_B Rab-like protein 3; Imm  99.6 8.3E-20 9.7E-25  128.9   0.0  174    4-181    31-229 (241)
227 4P0T_B CENP-M; Mitosis, Kineto  99.6 9.9E-20 1.2E-24  122.7   0.0  140    5-182    17-156 (176)
228 4WAU_B Centromere protein M; n  99.6 9.9E-20 1.2E-24  122.7   0.0  140    5-182    17-156 (176)
229 6FAE_B IQ motif and SEC7 domai  99.6 1.1E-19 1.3E-24  125.1   0.0  165    5-183    46-211 (213)
230 4WAU_A Centromere protein M; n  99.6 1.1E-19 1.3E-24  122.4   0.0  140    5-182    17-156 (176)
231 5KSP_B Mitochondrial Rho GTPas  99.6 1.3E-19 1.5E-24  123.2   0.0  160    5-182     5-168 (190)
232 6LI3_A G-protein coupled recep  99.6 1.3E-19 1.5E-24  128.3   0.0  175    6-182    33-238 (248)
233 1X3S_A Ras-related protein Rab  99.6 1.4E-19 1.6E-24  123.4   0.0  165    5-183    12-178 (195)
234 2H57_B Crystal structure of hu  99.6 1.5E-19 1.7E-24  122.1   0.0  167    4-183    17-187 (190)
235 7D7M_D Prostaglandin E2 recept  99.6 1.9E-19 2.1E-24  127.4   0.0  176    5-182    33-239 (249)
236 6G79_A Guanine nucleotide-bind  99.6 2.8E-19 3.3E-24  124.1   0.0  177    5-183    27-216 (225)
237 6S6D_C Ras-related GTP-binding  99.6 3.1E-19 3.6E-24  134.7   0.0  171    5-182    58-237 (399)
238 6S6A_C Ras-related GTP-binding  99.6 3.7E-19 4.3E-24  134.3   0.0  170    5-182    58-237 (399)
239 6F1Y_j Cytoplasmic dynein 1 he  99.6   4E-19 4.6E-24  131.4   0.0  172    6-182    16-256 (337)
240 6VIJ_A Rab-like protein 3; Imm  99.6   5E-19 5.8E-24  125.3   0.0  167    5-181    32-233 (245)
241 6VIJ_B Rab-like protein 3; Imm  99.6   5E-19 5.8E-24  125.3   0.0  167    5-181    32-233 (245)
242 2GJ8_B tRNA modification GTPas  99.6 5.7E-19 6.7E-24  116.8   0.0  156    6-182     2-165 (172)
243 2GJ8_D tRNA modification GTPas  99.6 5.7E-19 6.7E-24  116.8   0.0  156    6-182     2-165 (172)
244 2GJA_B tRNA modification GTPas  99.6 5.7E-19 6.7E-24  116.8   0.0  156    6-182     2-165 (172)
245 3O47_B ADP-ribosylation factor  99.6 5.8E-19 6.7E-24  130.0   0.0  164    6-183   163-327 (329)
246 6WWZ_A Guanine nucleotide-bind  99.6 6.3E-19 7.4E-24  124.9   0.0  176    6-183    43-241 (250)
247 4WNR_A Mb Roco2 RocCORdC 287-6  99.6 8.4E-19 9.8E-24  129.9   0.0  159    5-181    38-197 (349)
248 3TAH_A Ferrous iron uptake tra  99.6 8.5E-19 9.8E-24  126.1   0.0  151    8-180     3-161 (272)
249 2HT6_A GTP-binding protein GEM  99.6 8.7E-19   1E-23  116.1   0.0  166    5-183     3-172 (174)
250 3B1V_A Ferrous iron uptake tra  99.6 9.9E-19 1.2E-23  125.7   0.0  153    7-181     2-162 (272)
251 5KTY_A Mitochondrial Rho GTPas  99.6   1E-18 1.2E-23  132.7   0.0  161    5-183   239-403 (424)
252 6VS4_A Small COPII coat GTPase  99.6   1E-18 1.2E-23  121.8   0.0  172    6-182    37-217 (225)
253 2WJI_A FERROUS IRON TRANSPORT   99.6 1.1E-18 1.3E-23  115.6   0.0  155    7-182     2-164 (165)
254 2LKD_A Translation initiation   99.6 1.3E-18 1.5E-23  116.6   0.0  167    3-181     3-169 (178)
255 4C0L_A MITOCHONDRIAL RHO GTPAS  99.6 1.3E-18 1.5E-23  132.2   0.0  161    5-182   243-406 (423)
256 2Q3F_A Ras-related GTP-binding  99.6 1.3E-18 1.5E-23  116.7   0.0  168    6-182     2-180 (181)
257 4DHE_A Probable GTP-binding pr  99.6 1.3E-18 1.6E-23  121.4   0.0  168    6-182    27-210 (223)
258 2WJJ_B FERROUS IRON TRANSPORT   99.6 1.4E-18 1.6E-23  115.3   0.0  157    6-183     2-166 (168)
259 4DHE_B Probable GTP-binding pr  99.6 1.4E-18 1.7E-23  121.2   0.0  168    6-182    27-210 (223)
260 3LLU_A Ras-related GTP-binding  99.6 1.5E-18 1.7E-23  118.5   0.0  168    5-181    17-195 (196)
261 4C0K_A MITOCHONDRIAL RHO GTPAS  99.6 1.5E-18 1.7E-23  131.7   0.0  161    5-182   243-406 (423)
262 5KSO_A Mitochondrial Rho GTPas  99.6 1.5E-18 1.7E-23  117.6   0.0  161    4-182     4-168 (190)
263 2WJG_A FERROUS IRON TRANSPORT   99.6 1.5E-18 1.8E-23  117.6   0.0  159    3-182     2-168 (188)
264 5KU1_A Mitochondrial Rho GTPas  99.6 1.6E-18 1.8E-23  131.6   0.0  160    5-182   239-402 (424)
265 4NON_A Ferrous iron uptake tra  99.6 1.6E-18 1.9E-23  123.8   0.0  151    9-181     2-160 (260)
266 2ZEJ_B Leucine-rich repeat kin  99.6 1.6E-18 1.9E-23  115.8   0.0  169    8-182     2-177 (184)
267 2ZEJ_A Leucine-rich repeat kin  99.5 1.8E-18 2.1E-23  115.3   0.0  168    8-181     2-176 (184)
268 2WJH_B FERROUS IRON TRANSPORT   99.5 1.9E-18 2.2E-23  114.6   0.0  156    7-183     2-165 (166)
269 1EGA_B GTP-BINDING PROTEIN ERA  99.5 1.9E-18 2.2E-23  125.7   0.0  162    3-181     3-173 (301)
270 3IEU_A GTP-binding protein era  99.5 1.9E-18 2.2E-23  125.7   0.0  162    3-181     3-173 (301)
271 3LVQ_E Arf-GAP with SH3 domain  99.5 2.5E-18   3E-23  132.6   0.0  163    6-182   320-483 (497)
272 3R9X_A GTPase Era, Ribosomal R  99.5 2.5E-18   3E-23  125.4   0.0  164    3-181     4-179 (307)
273 5M04_A GTPase ObgE/CgtA (E.C.3  99.5 2.6E-18   3E-23  128.1   0.0  161    7-182   178-353 (360)
274 4ARZ_B GTP-BINDING PROTEIN GTR  99.5 2.6E-18   3E-23  127.3   0.0  173    2-182     3-183 (341)
275 5KSZ_A Mitochondrial Rho GTPas  99.5   3E-18 3.4E-23  130.2   0.0  161    5-183   239-403 (424)
276 3C5H_A Glucocorticoid receptor  99.5 3.2E-18 3.7E-23  122.0   0.0   89   80-182   163-254 (255)
277 2CJW_B GTP-BINDING PROTEIN GEM  99.5 3.5E-18   4E-23  115.3   0.0  166    5-183     3-172 (192)
278 5X4B_A GTPase Der; Ribosome bi  99.5 3.6E-18 4.2E-23  112.1   0.0  152    8-180     2-161 (162)
279 6VP6_B Leucine-rich repeat ser  99.5 3.9E-18 4.5E-23  144.1   0.0  124    3-127     3-133 (1201)
280 1SUL_B Probable GTP-binding pr  99.5 3.9E-18 4.6E-23  116.5   0.0  161    5-181    20-193 (195)
281 1SVI_A GTP-binding protein Ysx  99.5 3.9E-18 4.6E-23  116.5   0.0  161    5-181    20-193 (195)
282 3J8G_X PROTEIN/RNA Complex; Ri  99.5   4E-18 4.7E-23  131.7   0.0  163    5-181   199-372 (490)
283 5DN8_A GTPase Der; GTP-binding  99.5 4.6E-18 5.4E-23  129.8   0.0  163    5-181   175-348 (446)
284 1LNZ_A SPO0B-associated GTP-bi  99.5   5E-18 5.8E-23  125.9   0.0  158    9-182   159-329 (342)
285 4CSU_9 50S RIBOSOMAL PROTEIN L  99.5   5E-18 5.9E-23  127.9   0.0  161    7-182   158-333 (390)
286 5U4V_A Rho GTPase-activating p  99.5 5.2E-18   6E-23  114.4   0.0  134    3-164     3-147 (176)
287 6OJF_A Leucine-rich repeat ser  99.5 5.2E-18   6E-23  116.5   0.0  169    4-181    16-194 (206)
288 6OJF_B Leucine-rich repeat ser  99.5 5.2E-18   6E-23  116.5   0.0  169    4-181    16-194 (206)
289 3IEV_A GTP-binding protein era  99.5 8.1E-18 9.4E-23  122.8   0.0  161    6-181     8-180 (308)
290 3R7W_B GTP-binding protein GTR  99.5 8.3E-18 9.6E-23  124.2   0.0  165   10-182     1-173 (331)
291 3PQC_A Probable GTP-binding pr  99.5 8.6E-18   1E-22  114.5   0.0  163    5-182    20-193 (195)
292 6OT0_A Smoothened homolog, Gua  99.5 1.1E-17 1.2E-22  124.7   0.0  128   56-183   194-345 (354)
293 3W5I_B Ferrous iron transport   99.5 1.1E-17 1.3E-22  115.2   0.0  154    7-182     2-164 (204)
294 3W5J_A Ferrous iron transport   99.5 1.3E-17 1.5E-22  115.0   0.0  154    7-182     2-164 (204)
295 3IBY_D Ferrous iron transport   99.5 1.4E-17 1.6E-22  118.5   0.0  152    9-181     2-165 (256)
296 2QU8_A Putative nucleolar GTP-  99.5 1.4E-17 1.7E-22  116.4   0.0  168    5-182    26-204 (228)
297 3IBY_B Ferrous iron transport   99.5 1.4E-17 1.7E-22  118.5   0.0  152    9-181     2-165 (256)
298 3PQC_B Probable GTP-binding pr  99.5 1.5E-17 1.8E-22  113.4   0.0  163    5-182    20-193 (195)
299 5DO9_C Guanine nucleotide-bind  99.5 1.7E-17 1.9E-22  121.7   0.0  129   55-183   162-314 (314)
300 1UDX_A the GTP-binding protein  99.5 1.7E-17   2E-22  126.1   0.0  157    7-181   156-323 (416)
301 1SHZ_D Guanine Nucleotide-Bind  99.5 1.8E-17   2E-22  122.9   0.0  128   56-183   180-331 (340)
302 6HLU_A PROTEIN; GTPase, LRRK2,  99.5 1.9E-17 2.2E-22  137.4   0.0  160    6-182   478-646 (974)
303 3A1W_A Iron(II) transport prot  99.5   2E-17 2.4E-22  109.9   0.0  156    6-182     3-166 (168)
304 1ZCA_A Galphai/12; GTP-binding  99.5 2.1E-17 2.5E-22  123.3   0.0  128   56-183   199-350 (359)
305 4FMC_F ROrf2, Ras-related prot  99.5 2.1E-17 2.5E-22  101.9   0.0  115   11-125     1-116 (117)
306 4TMW_B eIF5B; Translation fact  99.5 2.2E-17 2.5E-22  122.2   0.0  119    4-126     6-141 (345)
307 1PUI_A Probable GTP-binding pr  99.5 2.2E-17 2.5E-22  114.2   0.0  163    4-182    22-198 (210)
308 3A1S_B Iron(II) transport prot  99.5 2.2E-17 2.6E-22  117.4   0.0  155    6-181     3-165 (258)
309 5DI3_B ADP-ribosylation factor  99.5 2.3E-17 2.6E-22  117.5   0.0  118    6-127     2-120 (263)
310 3DPU_B Rab family protein; Roc  99.5 2.3E-17 2.7E-22  128.9   0.0  160    6-182    39-207 (535)
311 6VP8_A Leucine-rich repeat ser  99.5 2.3E-17 2.7E-22  139.5   0.0  122    5-127     2-130 (1198)
312 3AH8_A Guanine nucleotide-bind  99.5 2.3E-17 2.7E-22  122.9   0.0  129   55-183   194-346 (355)
313 2G3Y_A GTP-binding protein GEM  99.5 2.4E-17 2.8E-22  113.9   0.0  165    5-182    34-202 (211)
314 1WF3_A GTP-binding protein; GT  99.5 2.6E-17   3E-22  120.0   0.0  160    4-180     3-170 (301)
315 4FID_A G protein alpha subunit  99.5 2.9E-17 3.4E-22  121.8   0.0  128   56-183   161-328 (340)
316 4N0D_A Guanine nucleotide-bind  99.5 2.9E-17 3.4E-22  122.5   0.0  129   55-183   195-347 (356)
317 1SVS_A Guanine nucleotide-bind  99.5 3.1E-17 3.6E-22  122.2   0.0  129   55-183   192-344 (353)
318 3DPU_A Rab family protein; Roc  99.5 3.3E-17 3.8E-22  128.0   0.0  159    6-181    39-206 (535)
319 4EKC_C Guanine nucleotide-bind  99.5 3.5E-17 4.1E-22  121.6   0.0  126   56-183   187-338 (347)
320 1ZCB_A G alpha i/13; GTP-bindi  99.5 3.7E-17 4.3E-22  122.1   0.0  128   56-183   201-353 (362)
321 5M7H_A GTPase Der; GTPase, Eng  99.5 3.9E-17 4.5E-22  124.4   0.0  164    5-182   172-348 (436)
322 4EKD_A Guanine nucleotide-bind  99.4 4.4E-17 5.1E-22  121.1   0.0  128   56-183   187-338 (347)
323 3L82_B Telomeric repeat-bindin  99.4 4.7E-17 5.5E-22  114.2   0.0  168    5-183    13-223 (227)
324 6S6A_A Ras-related GTP-binding  99.4   5E-17 5.8E-22  118.8   0.0  169    3-181     2-180 (313)
325 6S6D_A Ras-related GTP-binding  99.4   5E-17 5.8E-22  118.8   0.0  169    3-181     2-180 (313)
326 6S6D_B Ras-related GTP-binding  99.4   5E-17 5.8E-22  118.8   0.0  169    3-181     2-180 (313)
327 2XTZ_C GUANINE NUCLEOTIDE-BIND  99.4 5.3E-17 6.1E-22  121.0   0.0  128   55-182   182-344 (354)
328 4ARZ_A GTP-BINDING PROTEIN GTR  99.4 6.1E-17   7E-22  118.4   0.0  170    3-181     1-182 (310)
329 6XRS_C GTPase Der; GTPase, KH   99.4 6.2E-17 7.2E-22  124.1   0.0  162    6-181   189-361 (458)
330 6XRS_D GTPase Der; GTPase, KH   99.4 6.2E-17 7.2E-22  124.1   0.0  162    6-181   189-361 (458)
331 1NRJ_B Signal recognition part  99.4 6.7E-17 7.8E-22  112.4   0.0  119    4-127     8-135 (218)
332 2XTZ_A GUANINE NUCLEOTIDE-BIND  99.4 7.4E-17 8.6E-22  120.2   0.0  129   55-183   182-345 (354)
333 4FID_B G protein alpha subunit  99.4 8.4E-17 9.7E-22  119.3   0.0  128   56-183   161-328 (340)
334 2DBY_A GTP-binding protein; GT  99.4 8.6E-17   1E-21  120.5   0.0   85    9-93      2-113 (368)
335 1MKY_A Probable GTP-binding pr  99.4   1E-16 1.2E-21  122.0   0.0  164    5-182   177-354 (439)
336 4DCU_A GTPase Der; GTPASE, ENG  99.4   1E-16 1.2E-21  122.9   0.0  166    5-182   192-368 (456)
337 5KH0_B HydF; [FEFE]-HYDROGENAS  99.4 1.1E-16 1.3E-21  121.0   0.0  154    3-181     3-165 (396)
338 5KH0_D HydF; [FEFE]-HYDROGENAS  99.4 1.1E-16 1.3E-21  121.0   0.0  154    3-181     3-165 (396)
339 3GEI_B tRNA modification GTPas  99.4 1.4E-16 1.6E-21  123.0   0.0  157    6-181   231-396 (476)
340 2CXX_A Probable GTP-binding pr  99.4 1.4E-16 1.7E-21  108.1   0.0  157    9-182     2-183 (190)
341 4A9A_A RIBOSOME-INTERACTING GT  99.4 1.5E-16 1.8E-21  119.5   0.0  155    6-182    70-299 (376)
342 3GEE_A tRNA modification GTPas  99.4 1.6E-16 1.8E-21  122.7   0.0  157    6-181   231-396 (476)
343 3GEI_A tRNA modification GTPas  99.4 1.6E-16 1.8E-21  122.7   0.0  157    6-181   231-396 (476)
344 2DYK_B GTP-binding protein; GT  99.4 1.6E-16 1.9E-21  104.4   0.0  152    8-181     1-160 (161)
345 3R7W_C GTP-binding protein GTR  99.4 2.4E-16 2.8E-21  115.1   0.0  165    7-180     2-178 (307)
346 4Q5I_B Ferrous iron transport   99.4 2.8E-16 3.3E-21  113.0   0.0  151    7-179     2-165 (270)
347 6RLB_E PROTEIN; dynein, cilia,  99.4 2.9E-16 3.3E-21  117.0   0.0  166    5-181    28-238 (351)
348 6SC2_F DYNC2H1 variant protein  99.4 2.9E-16 3.3E-21  117.0   0.0  166    5-181    28-238 (351)
349 3I8S_B Ferrous iron transport   99.4   3E-16 3.5E-21  113.1   0.0  152    7-180     2-166 (274)
350 4NCF_A Eukaryotic translation   99.4 3.5E-16 4.1E-21  120.3   0.0  119    4-126     6-141 (457)
351 4TMX_A eIF5B; Translation fact  99.4 4.4E-16 5.1E-21  115.4   0.0  118    5-126     7-141 (345)
352 6AU6_A Guanine nucleotide-bind  99.4 4.7E-16 5.4E-21  116.9   0.0  127   56-182   200-367 (377)
353 4B43_A TRANSLATION INITIATION   99.4 4.9E-16 5.7E-21  116.2   0.0  163    6-180    71-233 (363)
354 5YT0_A Probable translation in  99.3 5.7E-16 6.6E-21  115.8   0.0  118    5-126    13-147 (364)
355 4N3N_A Eukaryotic translation   99.3 5.8E-16 6.7E-21  122.8   0.0  118    5-126     7-141 (603)
356 3GEH_A tRNA modification GTPas  99.3 6.2E-16 7.2E-21  119.1   0.0  150    7-181   223-382 (462)
357 4B3X_A TRANSLATION INITIATION   99.3 6.9E-16   8E-21  115.4   0.0  163    6-180    71-233 (363)
358 4N3G_A Eukaryotic translation   99.3 8.4E-16 9.7E-21  122.0   0.0  119    4-126     6-141 (603)
359 6EG8_I Guanine nucleotide-bind  99.3 9.4E-16 1.1E-20  115.5   0.0  127   56-182   204-371 (381)
360 3TR5_A Peptide chain release f  99.3   1E-15 1.2E-20  119.8   0.0  118    5-126    10-148 (528)
361 3PEN_A Translation initiation   99.3 1.1E-15 1.3E-20  115.5   0.0  168    3-180     3-189 (403)
362 4N3S_A Domains1-3; Translation  99.3 1.2E-15 1.3E-20  117.5   0.0  118    5-126     7-141 (457)
363 1XZP_A Probable tRNA modificat  99.3 1.3E-15 1.5E-20  118.0   0.0  151    7-181   242-403 (482)
364 2E87_A Hypothetical protein PH  99.3 1.6E-15 1.8E-20  113.3   0.0  156    8-181   167-334 (357)
365 5LMV_a 30S ribosomal protein S  99.3 1.7E-15 1.9E-20  119.7   0.0  163    6-180    71-233 (571)
366 1G7S_A TRANSLATION INITIATION   99.3 1.8E-15 2.1E-20  119.9   0.0  117    6-126     3-136 (594)
367 5ADY_6 50S RIBOSOMAL PROTEIN L  99.3 1.9E-15 2.2E-20  115.4   0.0  156    7-181   196-361 (426)
368 2QTH_A GTP-binding protein; be  99.3   2E-15 2.4E-20  113.0   0.0  163    6-181   177-352 (364)
369 5XKT_B Urease accessory protei  99.3 2.3E-15 2.6E-20  102.5   0.0   86   78-182   113-198 (200)
370 5UCV_A Probable GTP-binding pr  99.3 2.7E-15 3.1E-20  104.7   0.0  163    6-182    29-205 (217)
371 4W7G_A Dynein Light Intermedia  99.3 2.9E-15 3.4E-20  116.9   0.0  172    5-178    49-292 (552)
372 4KJZ_B Translation initiation   99.3   3E-15 3.5E-20  115.7   0.0  162    6-179    70-231 (473)
373 4KJZ_C Translation initiation   99.3 3.6E-15 4.2E-20  115.3   0.0  162    6-179    70-231 (473)
374 3WBI_A Eukaryotic translation   99.3 3.9E-15 4.5E-20  118.3   0.0  118    5-126     6-140 (606)
375 2QTF_A GTP-binding protein; be  99.3 4.3E-15   5E-20  111.3   0.0  163    6-181   177-352 (364)
376 3P1J_D GTPase IMAP family memb  99.2 4.7E-15 5.5E-20  101.5   0.0  122    6-127     3-137 (209)
377 3KXI_A GTP-binding protein (Hf  99.2   5E-15 5.8E-20  110.9   0.0  163    6-181   177-352 (364)
378 4RD4_A Translation initiation   99.2 6.2E-15 7.2E-20  112.0   0.0  168    3-180     4-201 (415)
379 4RJL_A Translation initiation   99.2 6.2E-15 7.2E-20  112.0   0.0  168    3-180     4-201 (415)
380 3L2O_B S-phase kinase-associat  99.2 6.3E-15 7.3E-20  108.2   0.0  162    7-182   100-307 (312)
381 5O8W_A Elongation factor 1-alp  99.2 7.1E-15 8.3E-20  113.4   0.0  158    3-172     2-201 (466)
382 3J5Y_B Eukaryotic peptide chai  99.2 7.3E-15 8.4E-20  112.1   0.0  162    5-175     3-206 (428)
383 3P1J_C GTPase IMAP family memb  99.2   8E-15 9.3E-20  100.4   0.0  122    6-127     3-137 (209)
384 1F60_A ELONGATION FACTOR EEF1A  99.2 8.3E-15 9.6E-20  112.8   0.0  120    3-126     2-159 (458)
385 1WXQ_A GTP-binding protein; GT  99.2 8.5E-15 9.9E-20  110.9   0.0   84    9-92      1-114 (397)
386 6RA9_B Elongation Factor 1A2;   99.2 9.4E-15 1.1E-19  112.6   0.0  160    3-171     2-202 (461)
387 5OWV_D ATP-binding protein; dy  99.2 1.1E-14 1.2E-19  115.4   0.0  160    6-179    62-275 (614)
388 5OXF_C ATP-binding protein; dy  99.2 1.1E-14 1.2E-19  115.4   0.0  160    6-179    62-275 (614)
389 2XTO_A GTPASE IMAP FAMILY MEMB  99.2 1.1E-14 1.3E-19  102.1   0.0  120    8-127     2-134 (240)
390 2WSM_A HYDROGENASE EXPRESSION/  99.2 1.4E-14 1.6E-19  101.0   0.0  156    5-182    27-213 (221)
391 6BK7_B Adenosylhomocysteinase   99.2 1.4E-14 1.7E-19  109.7   0.0  120    4-127     9-145 (407)
392 5FG3_A Probable translation in  99.2 1.6E-14 1.8E-19  115.2   0.0  118    5-126    13-147 (623)
393 1KJZ_A eIF2gamma; initiation o  99.2 1.9E-14 2.2E-19  109.2   0.0  167    4-180     6-197 (410)
394 1KK1_A eIF2gamma, PHOSPHOAMINO  99.2 1.9E-14 2.2E-19  109.2   0.0  167    4-180     6-197 (410)
395 4AC9_A MJ0495-LIKE PROTEIN; SE  99.2 1.9E-14 2.2E-19  111.6   0.0  165    4-180    15-186 (482)
396 4AC9_C MJ0495-LIKE PROTEIN; SE  99.2 1.9E-14 2.2E-19  111.6   0.0  165    4-180    15-186 (482)
397 4ACA_B TRANSLATION ELONGATION   99.2 1.9E-14 2.2E-19  111.6   0.0  165    4-180    15-186 (482)
398 6YXY_EQ bL28m, uL29m, uL30m, b  99.2 1.9E-14 2.2E-19  114.0   0.0  161    6-181    74-259 (655)
399 1SKQ_B Elongation factor 1-alp  99.2   2E-14 2.3E-19  109.9   0.0  161    4-172     2-202 (435)
400 6N0B_C Septin-12; cytoskeleton  99.2 2.5E-14 2.9E-19  103.5   0.0  163    4-181    13-211 (285)
401 6UQQ_A Septin-2, Septin-8; cyt  99.2 2.5E-14 2.9E-19  103.5   0.0  163    4-181    13-211 (285)
402 5CK4_A Putative signal recogni  99.2 2.6E-14   3E-19  105.1   0.0   26    5-30     16-41  (316)
403 5EE0_A Small ubiquitin-related  99.2 2.7E-14 3.2E-19  108.1   0.0  124    5-128    22-173 (395)
404 2YWE_A GTP-binding protein lep  99.2 2.9E-14 3.4E-19  113.3   0.0  160    5-180     3-181 (600)
405 2YWF_A GTP-binding protein lep  99.2 2.9E-14 3.4E-19  113.3   0.0  160    5-180     3-181 (600)
406 4D61_i 40S RIBOSOMAL PROTEIN S  99.2   3E-14 3.5E-19  108.7   0.0  160    7-175     2-203 (426)
407 5EE3_B Small ubiquitin-related  99.2   3E-14 3.5E-19  107.9   0.0  124    5-128    22-173 (395)
408 2WSM_B HYDROGENASE EXPRESSION/  99.2 3.1E-14 3.6E-19   99.2   0.0  156    4-182    26-213 (221)
409 2GED_A Signal recognition part  99.1 3.4E-14   4E-19   96.7   0.0  117    6-127    46-171 (193)
410 1KK3_A eIF2gamma, GUANOSINE-5'  99.1 3.5E-14   4E-19  107.8   0.0  167    4-180     6-197 (410)
411 1S0U_A Translation initiation   99.1 4.6E-14 5.3E-19  107.2   0.0  168    3-180     3-195 (408)
412 4ZU9_A Elongation factor SelB;  99.1   5E-14 5.8E-19  111.7   0.0  161    7-180     2-167 (582)
413 2GED_B Signal recognition part  99.1 5.3E-14 6.2E-19   95.7   0.0  117    6-127    46-171 (193)
414 5CYO_A Septin-9; septin 9 gtpa  99.1 5.4E-14 6.3E-19  101.2   0.0  118    7-128     3-158 (274)
415 4ZKD_A Superkiller protein 7 (  99.1 5.9E-14 6.8E-19  109.3   0.0  167    5-175    16-231 (499)
416 4ZKE_A Superkiller protein 7 (  99.1 5.9E-14 6.8E-19  109.3   0.0  167    5-175    16-231 (499)
417 3WY9_B Elongation factor 1-alp  99.1 6.2E-14 7.2E-19  107.2   0.0  159    3-173     2-191 (434)
418 1R5B_A Eukaryotic peptide chai  99.1 6.7E-14 7.8E-19  108.0   0.0  168    5-175    40-244 (467)
419 5TY0_A Adenosylhomocysteinase   99.1 6.8E-14 7.8E-19  106.6   0.0  119    4-126     7-149 (422)
420 3CB4_D GTP-binding protein lep  99.1 6.9E-14   8E-19  111.2   0.0  159    7-181     3-180 (599)
421 3VQT_A Peptide chain release f  99.1 7.4E-14 8.6E-19  110.0   0.0  118    5-126    28-166 (548)
422 3VR1_B Peptide chain release f  99.1 7.4E-14 8.6E-19  110.0   0.0  118    5-126    28-166 (548)
423 2QNR_B Septin-2; septin, Struc  99.1 7.8E-14 9.1E-19  101.8   0.0  120    4-127    14-170 (301)
424 4CRN_P ERF3 IN RIBOSOME BOUND   99.1 8.5E-14 9.9E-19  106.4   0.0  160    5-173     2-203 (430)
425 4CXG_A ELONGATION FACTOR 1A, 4  99.1 8.7E-14   1E-18  106.5   0.0  120    4-126     2-158 (437)
426 1R5O_A Eukaryotic peptide chai  99.1 9.2E-14 1.1E-18  107.2   0.0  167    5-175    40-244 (467)
427 6B8D_A Adenosylhomocysteinase   99.1 9.3E-14 1.1E-18  105.6   0.0  119    4-126     9-151 (408)
428 2XEX_B ELONGATION FACTOR G; GT  99.1 9.6E-14 1.1E-18  112.1   0.0  160    3-179     5-181 (693)
429 4H9G_A Elongation factor Tu-A   99.1 9.8E-14 1.1E-18  105.2   0.0  121    3-127     6-143 (405)
430 2QNR_A Septin-2; septin, Struc  99.1 9.8E-14 1.1E-18  101.3   0.0  120    4-127    14-170 (301)
431 2C78_A ELONGATION FACTOR TU-A   99.1 9.9E-14 1.1E-18  105.1   0.0  121    3-127     6-143 (405)
432 6UPQ_A Septin-2, Septin-11; cy  99.1 9.9E-14 1.2E-18   99.7   0.0  118    7-128     2-156 (274)
433 1H65_A CHLOROPLAST OUTER ENVEL  99.1 1.1E-13 1.2E-18   99.7   0.0  121    6-127    37-169 (270)
434 5CK3_B SRX domain, Putative si  99.1 1.2E-13 1.4E-18  101.2   0.0   28    4-31      6-33  (307)
435 6NOT_B Elongation factor G; Na  99.1 1.3E-13 1.5E-18  111.7   0.0  118    5-126    15-149 (707)
436 4H1V_A Dynamin-1-like protein   99.1 1.4E-13 1.7E-18  102.9   0.0   69   57-127   141-222 (369)
437 5G06_P EXOSOME COMPLEX COMPONE  99.1 1.5E-13 1.7E-18  111.5   0.0  164    6-173   265-477 (747)
438 3J25_A Tetracycline resistance  99.1 1.5E-13 1.8E-18  110.0   0.0  116    8-127     2-134 (638)
439 3MCA_A Elongation factor 1 alp  99.1 1.6E-13 1.8E-18  109.0   0.0  119    6-126   175-329 (592)
440 1H65_B CHLOROPLAST OUTER ENVEL  99.1 1.7E-13   2E-18   98.7   0.0  121    6-127    37-169 (270)
441 6NOT_A Elongation factor G; Na  99.1 1.7E-13   2E-18  110.9   0.0  118    5-126    15-149 (707)
442 1XB2_A Mitochondrial Elongatio  99.1 1.7E-13   2E-18  104.0   0.0  119    4-127    10-145 (409)
443 5HCI_E GPN-loop GTPase 1 (E.C.  99.0 1.8E-13 2.1E-18   97.2   0.0  128   55-182    98-247 (261)
444 5HCN_A GPN-loop GTPase 1 (E.C.  99.0 1.8E-13 2.1E-18   97.2   0.0  128   55-182    98-247 (261)
445 5IZM_A Selenocysteine-specific  99.0 2.9E-13 3.4E-18  108.1   0.0  168    4-179    23-231 (616)
446 1D2E_D ELONGATION FACTOR TU (E  99.0 3.1E-13 3.6E-18  102.3   0.0  116    7-127     2-134 (397)
447 5TV2_A Ornithine aminotransfer  99.0 3.2E-13 3.7E-18  102.3   0.0  119    4-126     6-148 (405)
448 4ZCI_A GTP-binding protein Typ  99.0 3.5E-13 4.1E-18  107.8   0.0  117    6-126    37-168 (635)
449 2J3E_A T7I23.11 PROTEIN; ATTOC  99.0   4E-13 4.6E-18   95.5   0.0  122    6-127    33-165 (249)
450 1ZUN_B Sulfate adenylyltransfe  99.0 4.2E-13 4.9E-18  102.7   0.0  158    5-173    21-214 (434)
451 5IZL_A Selenocysteine-specific  99.0 4.4E-13 5.1E-18  107.0   0.0  168    4-179    23-231 (616)
452 3P26_A Elongation factor 1 alp  99.0 4.6E-13 5.4E-18  104.0   0.0  162    5-173    30-228 (483)
453 3DEF_A T7I23.11 protein (E.C.3  99.0 5.1E-13 5.9E-18   95.7   0.0  122    6-127    34-166 (262)
454 3T34_B Dynamin-related protein  99.0 5.1E-13   6E-18   99.5   0.0   69   57-127   137-218 (360)
455 2QAG_C Septin-2, Septin-6, Sep  99.0 6.2E-13 7.2E-18  101.5   0.0  160    5-179    28-223 (418)
456 2OHF_A GTP-binding protein 9;   99.0 6.8E-13 7.9E-18  100.7   0.0   88    5-92     19-129 (396)
457 6MQ9_A Septin-12; cytoskeleton  99.0 7.6E-13 8.9E-18   96.6   0.0  120    5-128    21-177 (295)
458 6MQB_A Septin-12; cytoskeleton  99.0 7.6E-13 8.9E-18   96.6   0.0  120    5-128    21-177 (295)
       

##### No 1 #####
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Check the detailed profile-profile alignment
View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5JCP_A:AUTOPDB; Probability=99.8; Identities=98%; Resolution=2.1A; MatchedRegionTemplate=1145-1323; Arf-GAP with Rho-GAP domain, ANK; RhoA, RhoGAP, ARAP3, SIGNALING PROTEIN; HET: GDP, ALF; {Homo sapiens} ----AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ-
##### No 2 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-184 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6V6U_A:AUTOPDB; Probability=99.9; Identities=97%; Resolution=1.16A; MatchedRegionTemplate=4-185; Transforming protein RhoA (E.C.3.6.5.2); GTPase, Switch I, Switch II; HET: DIO, GDP; {Homo sapiens} --SMAAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
##### No 3 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=2-184 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3LW8_A:AUTOPDB; Probability=99.9; Identities=96%; Resolution=1.85A; MatchedRegionTemplate=-1-181; Transforming protein RhoA, IpgB2; IpgB2, RhoA, GTPase, GEF, GEF-GTPase-complex; HET: GDP; {Homo sapiens} -LGSAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
##### No 4 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4MIT_A:AUTOPDB; Probability=99.9; Identities=51%; Resolution=2.35A; MatchedRegionTemplate=13-192; Rho family GTPase (E.C.3.6.5.2), Serine/threonine; G domain, p21 binding domain; HET: MG, GTP; {Entamoeba histolytica} ---EKPTSIKLVVVGDGAVGKTCLLISYSIRKFPEDYIPTVFDNYVVSLTAGTRQIQLALWDTAGLEEYDQLRPLSYSSASIFLICFSVTSSVSYDNVITKWHPEVIHFAPKVPIILVGT KLDTRNDPAIVKRLTEQGMTVINTAKGEELKNRIKAVKYIECSAKTSENLKTVFDEAVKTVLM-
##### No 5 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4MIT_D:AUTOPDB; Probability=99.9; Identities=51%; Resolution=2.35A; MatchedRegionTemplate=11-190; Rho family GTPase (E.C.3.6.5.2), Serine/threonine; G domain, p21 binding domain; HET: GTP, MG; {Entamoeba histolytica} ---EKPTSIKLVVVGDGAVGKTCLLISYSIRKFPEDYIPTVFDNYVVSLTAGTRQIQLALWDTAGLEEYDQLRPLSYSSASIFLICFSVTSSVSYDNVITKWHPEVIHFAPKVPIILVGT KLDTRNDPAIVKRLTEQGMTVINTAKGEELKNRIKAVKYIECSAKTSENLKTVFDEAVKTVLM-
##### No 6 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3SEA_A:AUTOPDB; Probability=99.9; Identities=29%; Resolution=2.0A; MatchedRegionTemplate=4-168; GTP-binding protein Rheb; globular, Hydrolase; HET: GDP, GNP; {Homo sapiens} -----SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG NKKDLHMERVI------------SYEEGKALAESWN-AAFLESSAKENQTAVDVFRRIILEAE--
##### No 7 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-184 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6BCB_F:AUTOPDB; Probability=99.8; Identities=97%; Resolution=1.401A; MatchedRegionTemplate=5-185; Transforming protein RhoA, Rho guanine; Rho GTPase Guanine Nucleotide Exchange; HET: GSP, EDO; {Homo sapiens} ---MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
##### No 8 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-----CPNVP IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6JMG_A:AUTOPDB; Probability=99.8; Identities=21%; Resolution=2.701A; MatchedRegionTemplate=26-196; DnaJ homolog subfamily C member; small GTPase, HYDROLASE; HET: GTP; {Xenopus laevis} ----KALRIKVISMGNAEVGKSCIIKRYCEKRFVPKYQATIGIDYGVTKVHIKDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGHKETFESLDGWLAEMKQELGPQGNIDNIV FAVCANKIDSTKHRSVD------------ESEGRLWSESKG-FLYFETSAQSGEGINEMFQAFYSAIV--
##### No 9 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD-GVREVFEMATRAALQA >2CLS_A:AUTOPDB; Probability=99.8; Identities=44%; Resolution=2.31A; MatchedRegionTemplate=15-196; RHO-RELATED GTP-BINDING PROTEIN RHO6; NUCLEOTIDE-BINDING, GTP-BINDING PROTEIN RHO6, MEMBRANE; HET: GTP; {HOMO SAPIENS} --QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGC KTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN-
##### No 10 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2ATX_B:AUTOPDB; Probability=99.8; Identities=53%; Resolution=2.65A; MatchedRegionTemplate=22-200; small GTP binding protein TC10; TC10, GTPase, P-loop, alpha-beta, HYDROLASE; HET: GNP; {Homo sapiens} ----GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGT QIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT-
##### No 11 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD-GVREVFEMATRAALQA >3Q3J_B:AUTOPDB; Probability=99.8; Identities=45%; Resolution=1.971A; MatchedRegionTemplate=36-215; Plexin-A2, Rho-related GTP-binding protein Rho6; Ras-binding domain, plexin, small gtpase; HET: GNP; {Homo sapiens} ----VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGC KTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN-
##### No 12 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3X1X_A:AUTOPDB; Probability=99.8; Identities=30%; Resolution=1.0A; MatchedRegionTemplate=2-166; Ras-related protein Rap-1b; SIGNAL TRANSDUCTION, SIGNALING PROTEIN; HET: GNP; {Rattus norvegicus} ------REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVG NKCDLEDERVVG------------KEQGQNLARQWSNCAFLESSAKSKINVNEIFYDLVRQIN--
##### No 13 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2A5J_A:AUTOPDB; Probability=99.8; Identities=29%; Resolution=1.501A; MatchedRegionTemplate=15-183; Ras-related protein Rab-2B; GTPase, Signal transduction, Structural Genomics; HET: GDP; {Homo sapiens} --PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIG NKSDLESRRDVK------------REEGEAFAREH-GLIFMETSAKTACNVEEAFINTAKEIYR-
##### No 14 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-A-DIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIIL VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4DJT_B:AUTOPDB; Probability=99.8; Identities=23%; Resolution=1.8A; MatchedRegionTemplate=2-170; GTP-binding nuclear protein GSP1; Structural Genomics, Seattle Structural Genomics; HET: GDP; {Encephalitozoon cuniculi} --ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLAR-WVKEFQAVVGNEAPIVV CANKIDIKNRQKISK------------KLVMEVLKGK-NYEYFEISAKTAHNFGLPFLHLARIFT--
##### No 15 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2OV2_D:AUTOPDB; Probability=99.8; Identities=56%; Resolution=2.1A; MatchedRegionTemplate=1-177; Ras-related C3 botulinum toxin substrate; GTPase RAC3, small GTP binding; HET: EDO, GCP; {Homo sapiens} -----MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGT KLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL--
##### No 16 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3REF_B:AUTOPDB; Probability=99.8; Identities=46%; Resolution=1.95A; MatchedRegionTemplate=31-199; Rho-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling protein; HET: GDP, SO4; {Entamoeba histolytica} ----GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGL KVDLRKDGSDDV----------TKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFS-
##### No 17 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG-VREVFEMATRAALQA >1GWN_C:AUTOPDB; Probability=99.8; Identities=50%; Resolution=2.1A; MatchedRegionTemplate=46-226; RHO-RELATED GTP-BINDING PROTEIN RHOE; GTPASE, INACTIVE GTPASE, SIGNAL TRANSDUCTION; HET: GTP; {Mus musculus} ---NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN-
##### No 18 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIEV-DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-----CPNV PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6HH2_A:AUTOPDB; Probability=99.8; Identities=27%; Resolution=1.449A; MatchedRegionTemplate=9-181; Ras-related protein Rab-7L1; Rab GTPase, membrane trafficking, SIGNALING; HET: GDP; {Homo sapiens} ---SRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGLERFTSMTRLYYRDASAAVIMFDVTNATTFSNSQR-WKQDLDSKLTLPNGEPV PALLLANKSDLSPWAVSR-------------DQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMR-
##### No 19 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3X1Z_A:AUTOPDB; Probability=99.8; Identities=30%; Resolution=1.25A; MatchedRegionTemplate=2-166; Ras-related protein Rap-1b; SIGNAL TRANSDUCTION, SIGNALING PROTEIN; HET: GNP; {Rattus norvegicus} ------REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFAAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVG NKCDLEDERVVG------------KEQGQNLARQWSNCAFLESSAKSKINVNEIFYDLVRQIN--
##### No 20 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4U5X_A:AUTOPDB; Probability=99.8; Identities=47%; Resolution=1.9A; MatchedRegionTemplate=8-182; OsRac1; Small GTPase, Rac, Plant; HET: GOL, GNP; {Oryza sativa subsp. japonica} -----TRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGSVVNLGLWDTAGLEDYSRLRPLSYRGADVFILSFSLISRASYENVQKKWMPELRRFAPGVPVVLVGT KLDLREDRAYLAD--HPASSIITTEQGEELRKLIGAVAYIECSSKTQRNIKAVFDTAIKVVL--
##### No 21 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2Q3H_A:AUTOPDB; Probability=99.8; Identities=46%; Resolution=1.73A; MatchedRegionTemplate=64-243; Ras homolog gene family, member; GTPase, Structural Genomics, Structural Genomics; HET: GDP; {Homo sapiens} ---AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGT QSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQ-
##### No 22 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG-VREVFEMATRAALQA >1M7B_A:AUTOPDB; Probability=99.8; Identities=50%; Resolution=2.0A; MatchedRegionTemplate=24-204; Rho-related GTP-binding protein RhoE; small GTPase, SIGNALING PROTEIN; HET: GTP; {Homo sapiens} ---NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN-
##### No 23 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH--FCPNVPIILV GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2GF0_B:AUTOPDB; Probability=99.8; Identities=27%; Resolution=1.9A; MatchedRegionTemplate=5-172; GTP-binding protein Di-Ras1; DIRAS, GDP/GTP binding, GTP hydrolysis; HET: GDP; {Homo sapiens} --PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLV GNKCDETQREVDT-------------REAQAVAQEWK-CAFMETSAKMNYNVKELFQELLTLET--
##### No 24 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD-GVREVFEMATRAALQA >2REX_D:AUTOPDB; Probability=99.8; Identities=44%; Resolution=2.3A; MatchedRegionTemplate=11-192; Plexin-B1, Rho-related GTP-binding protein Rho6; complex, Structural Genomics Consortium, SGC; HET: GNP, UNX; {Homo sapiens} --QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGC KTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN-
##### No 25 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3REG_B:AUTOPDB; Probability=99.8; Identities=46%; Resolution=1.801A; MatchedRegionTemplate=37-205; Rho-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling protein; HET: GSP; {Entamoeba histolytica} ----GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGL KVDLRKDGSDDVT----------KQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFS-
##### No 26 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2FN4_A:AUTOPDB; Probability=99.8; Identities=30%; Resolution=1.65A; MatchedRegionTemplate=28-195; Ras-related protein R-Ras; RRAS, GDP/GTP binding, GTP hydrolysis; HET: GDP; {Homo sapiens} ---PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG NKADLESQRQVP------------RSEASAFGASH-HVAYFEASAKLRLNVDEAFEQLVRAVRK-
##### No 27 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5C2K_A:AUTOPDB; Probability=99.8; Identities=97%; Resolution=1.42A; MatchedRegionTemplate=9-188; Transforming protein RhoA,Rac GTPase-activating protein; GTPase activation, fusion protein, small; HET: GDP; {Homo sapiens} ---MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ-
##### No 28 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4YON_B:AUTOPDB; Probability=99.8; Identities=57%; Resolution=1.95A; MatchedRegionTemplate=3-178; pREX1, Rac1(G12V); Protein binding; {Homo sapiens} -----MQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV---
##### No 29 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1GUA_A:AUTOPDB; Probability=99.8; Identities=30%; Resolution=2.0A; MatchedRegionTemplate=2-166; RAP1A, C-RAF1, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER; ONCOGENE PROTEIN/KINASE/EFFECTOR PROTEIN GTP-BINDING-PROTEIN, COMPLEX; HET: GNP; {Homo sapiens} ------REYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVG NKCDLEDERVVG------------KEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN--
##### No 30 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4GZL_A:AUTOPDB; Probability=99.8; Identities=58%; Resolution=2.0A; MatchedRegionTemplate=28-205; Ras-related C3 botulinum toxin substrate; Rossmann fold, GTP binding, membrane; HET: GNP; {Homo sapiens} ---FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV---
##### No 31 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5VCU_A:AUTOPDB; Probability=99.8; Identities=54%; Resolution=1.85A; MatchedRegionTemplate=9-185; Ras-related c3 botulinum toxin substrate; SSGCID, RAS, botulinum toxin, GTP; HET: GDP; {Naegleria fowleri} -----MESIKCVVVGDGAVGKTALLIAYSSGCFPEDYVPTVFDNYNKNIPYGDGIVSIALYDTAGQEDYDRLRPLSYPDTDVFLVCFSLENPNSLENCHSKWAEELKHYNPDTPIVLVGT KLDLKKDEEYVKKLKEKKISPVTTEQGQEMKDKIKACGYIECSAKTMENLTEAFNMAIDIAM--
##### No 32 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4RKE_A:AUTOPDB; Probability=99.8; Identities=29%; Resolution=2.0006A; MatchedRegionTemplate=2-169; GH01619p; GTP hydrolysis, hydrolase; HET: 1PE, GNP; {Drosophila melanogaster} ---SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGLEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIG NKSDLDSRREVK------------KEEGEAFAREH-GLVFMETSARTAANVEEAFINTAKEIYE-
##### No 33 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH----FCPNVPI ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5LDD_C:AUTOPDB; Probability=99.8; Identities=26%; Resolution=2.496A; MatchedRegionTemplate=11-183; Mon1, Ccz1, Rab small monomeric; heterodimeric GEF protein, endosomal maturation; HET: SO4; {Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)} ----KKVLLKVIILGDSGVGKTSLMNQYVNKKFSASYKATIGADFLTREVMVDDRQVTMQLWDTAGQERFQSLGVAFYRGADCCVLVFDVNNAKSFDALDSWRDEFLIQASPRDPENFPF VVLGIKIDVEESKRVIS-----------TKRAQTFCQSKGGIPYFETSAKEAINVEEAFQVIARNALM-
##### No 34 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5YOZ_A:AUTOPDB; Probability=99.8; Identities=26%; Resolution=NMR; MatchedRegionTemplate=10-176; Rab5a; Rab, GTPase, early endocytosis, GTP; {Leishmania donovani} --LMEATSAKIVMLGESGAGKSSIALRFTRNEFLANQETTIGAAFLSKTVMIDGRALKYEIWDTAGLERFRSLAPIYYRGASGALVVYDITNSESLKKAQTWIKELRANADPSLIIVLVG NKKDLGSLRQVS------------FEDGQRLAAEEQLAAFYEASAKDNNNVEQVFLDLAAK----
##### No 35 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG-VREVFEMATRAALQA >2V55_D:AUTOPDB; Probability=99.8; Identities=50%; Resolution=3.705A; MatchedRegionTemplate=38-217; RHO-ASSOCIATED PROTEIN KINASE 1 (E.C.2.7.11.1); SERINE/THREONINE-PROTEIN KINASE, RHOE, KINASE, ROCK-I; HET: GTP, ANP; {HOMO SAPIENS} ----QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN-
##### No 36 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3B13_B:AUTOPDB; Probability=99.8; Identities=57%; Resolution=3.006A; MatchedRegionTemplate=6-183; Dedicator of cytokinesis protein 2; protein-ptotein complex, lymphocyte chemotaxis, signal; {Homo sapiens} ---SGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV---
##### No 37 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5UB8_A:AUTOPDB; Probability=99.8; Identities=29%; Resolution=2.35A; MatchedRegionTemplate=20-184; Likely rab family GTP-binding protein; G-PROTEIN, RAB, GDP, P-LOOP, GTPASE; HET: GDP; {Candida albicans (strain SC5314 / ATCC MYA-2876)} -----EYLYKIVLIGDSGVGKSNLLSRFTRDEFNLESRSTIGVEFATRTLEIDGKRVKAQIWDTAGQERYRAITSAYYRGAVGALIVYDIAKTESYESVSRWLKELKEHADANIIIELVG NKSDLDHLRAV------------PTEEAKNFAMENN-LLFTEASALSSDNVDLSFHQLLKNIY--
##### No 38 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5DIS_B:AUTOPDB; Probability=99.8; Identities=27%; Resolution=2.85A; MatchedRegionTemplate=9-170; Exportin-1, GTP-binding nuclear protein Ran; FG-repeats, Nucleoporin, Nup214, Exportin, transport; HET: GTP, GLC, PRO; {Homo sapiens} ------VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCG NKVDIKDRKVKAK--------------SIVFHRK-KNLQYYDISAKSNYNFEKPFLWLARKLIG-
##### No 39 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6P0I_B:AUTOPDB; Probability=99.8; Identities=32%; Resolution=1.18A; MatchedRegionTemplate=20-187; Ras-related protein Ral-A; Ral GTPase, RalA, covalent inhibitor; HET: NL7, GOL, GDP, EDO; {Homo sapiens} ---NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG NKSDLEDKRQVS------------VEEAKNRAEQW-NVNYVETSAKTRANVDKVFFDLMREIRA-
##### No 40 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1Z0F_A:AUTOPDB; Probability=99.8; Identities=29%; Resolution=2.15A; MatchedRegionTemplate=17-184; RAB14, member RAS oncogene family; Rab GTPase, Rab14, Vesicular trafficking; HET: GDP; {Homo sapiens} ---NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG NKADLEAQRDVT------------YEEAKQFAEEN-GLLFLEASAKTGENVEDAFLEAAKKIYQ-
##### No 41 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1MH1_A:AUTOPDB; Probability=99.8; Identities=58%; Resolution=1.38A; MatchedRegionTemplate=3-180; RAC1, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER; GTP-BINDING, GTPASE, SMALL G-PROTEIN, RHO; HET: GNP; {Homo sapiens} -----PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC-
##### No 42 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH--FCPNVPIILV GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2GF0_C:AUTOPDB; Probability=99.8; Identities=28%; Resolution=1.9A; MatchedRegionTemplate=8-175; GTP-binding protein Di-Ras1; DIRAS, GDP/GTP binding, GTP hydrolysis; HET: GDP; {Homo sapiens} --PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLV GNKCDETQREVDTR-------------EAQAVAQEWK-CAFMETSAKMNYNVKELFQELLTLET--
##### No 43 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3BWD_D:AUTOPDB; Probability=99.8; Identities=49%; Resolution=1.53A; MatchedRegionTemplate=7-185; Rac-like GTP-binding protein ARAC6; G domain, GTP-binding, Lipoprotein, Membrane; HET: GDP; {Arabidopsis thaliana} --MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGT KLDLRDDKQFFID--HPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ-
##### No 44 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4LHW_B:AUTOPDB; Probability=99.8; Identities=30%; Resolution=1.55A; MatchedRegionTemplate=5-171; Ras-related protein Rab-8A; Small GTPase, PROTEIN TRANSPORT; HET: GNP; {Homo sapiens} ----HDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG NKCDVNDKRQVS------------KERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKA-
##### No 45 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2J1L_A:AUTOPDB; Probability=99.8; Identities=51%; Resolution=2.5A; MatchedRegionTemplate=45-223; RHO-RELATED GTP-BINDING PROTEIN RHOD (E.C.3.6.5.2); GTPASE, MEMBRANE, GTP-BINDING, PRENYLATION, HYDROLASE; HET: GDP; {HOMO SAPIENS} ----GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGC KTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALS-
##### No 46 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2J0V_B:AUTOPDB; Probability=99.8; Identities=48%; Resolution=1.78A; MatchedRegionTemplate=1-177; RAC-LIKE GTP-BINDING PROTEIN ARAC7; NUCLEOTIDE-BINDING PROTEIN, ROP9, ATRAC7, MEMBRANE; HET: GDP; {ARABIDOPSIS THALIANA} --MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGT KLDLRDDKGYLADHTN----VITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ-
##### No 47 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-184 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3RAP_R:AUTOPDB; Probability=99.8; Identities=33%; Resolution=2.2A; MatchedRegionTemplate=2-167; G PROTEIN RAP2A; G PROTEIN, RAS, GTPASE, RAP2; HET: GTP; {Homo sapiens} ------REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVG NKVDLESEREVS------------SSEGRALAEEWG-CPFMETSAKSKTMVDELFAEIVRQMNYA
##### No 48 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILV GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2KE5_A:AUTOPDB; Probability=99.8; Identities=33%; Resolution=NMR; MatchedRegionTemplate=13-178; Ras-related protein Ral-B; Ral, Cancer, Signalling, G protein; HET: MG, GNP; {Homo sapiens} ------ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVV GNKSDLEERRQVP------------VEEARSKAEEWG-VQYVETSAKTRANVDKVFFDLMREIRT-
##### No 49 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDG-KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVP IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6FF8_A:AUTOPDB; Probability=99.8; Identities=22%; Resolution=2.13A; MatchedRegionTemplate=22-196; Ras-related protein Rab-32; small GTPase, Rab, GTP, vesicle; HET: GTP; {Homo sapiens} --ETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGLERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIP AVLLANKCDQNKDSSQS------------PSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILV-
##### No 50 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=8-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1D5C_A:AUTOPDB; Probability=99.8; Identities=29%; Resolution=2.3A; MatchedRegionTemplate=11-171; RAB6 GTPASE; G-PROTEIN, GTPASE, RAB, RAB6, VESICULAR; HET: MSE, GDP; {Plasmodium falciparum} -------KYKLVFLGEQAVGKTSIITRFMYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVG NKTDLGDLRKVT------------YEEGMQKAQEY-NTMFHETSAKAGHNIKVLFKKTASK----
##### No 51 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6L6O_A:AUTOPDB; Probability=99.8; Identities=26%; Resolution=1.8A; MatchedRegionTemplate=21-186; Rab5a; Intracellular trafficking, GTPase, ENDOCYTOSIS; HET: GDP; {Leishmania donovani} ---MEATSAKIVMLGESGAGKSSIALRFTRNEFLANQETTIGAAFLSKTVMIDGRALKYEIWDTAGLERFRSLAPIYYRGASGALVVYDITNSESLKKAQTWIKELRANADPSLIIVLVG NKKDLGSLRQVS------------FEDGQRLAAEEQLAAFYEASAKDNNNVEQVFLDLAAK----
##### No 52 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1YU9_A:AUTOPDB; Probability=99.8; Identities=29%; Resolution=2.07A; MatchedRegionTemplate=3-171; GTP-binding protein; Rab GTPase, Rab4, vesicular trafficking; HET: GNP, SO4; {Homo sapiens} --ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG NKKDLDADREVT------------FLEASRFAQEN-ELMFLETSALTGEDVEEAFVQCARKILN-
##### No 53 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4M8N_F:AUTOPDB; Probability=99.8; Identities=30%; Resolution=3.294A; MatchedRegionTemplate=4-171; PlexinC1 Intracellular Region, Ras-related protein; GTPase, GTPase activating protein, Rap; HET: GDP, AF3; {Danio rerio} ----HMREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVG NKCDLEDERVVG------------KEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINS-
##### No 54 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4M8N_G:AUTOPDB; Probability=99.8; Identities=30%; Resolution=3.294A; MatchedRegionTemplate=3-170; PlexinC1 Intracellular Region, Ras-related protein; GTPase, GTPase activating protein, Rap; HET: AF3, GDP; {Danio rerio} ----HMREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVG NKCDLEDERVVG------------KEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINS-
##### No 55 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2EW1_A:AUTOPDB; Probability=99.8; Identities=25%; Resolution=2.0A; MatchedRegionTemplate=25-191; Ras-related protein Rab-30; G-protein, RAB, GTP analogue, Structural; HET: GNP; {Homo sapiens} ---DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVG NKIDLAERREVSQQ------------RAEEFSEAQ-DMYYLETSAKESDNVEKLFLDLACRLI--
##### No 56 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILV GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2FG5_A:AUTOPDB; Probability=99.8; Identities=25%; Resolution=2.801A; MatchedRegionTemplate=20-187; Ras-related protein Rab-31; G-PROTEIN, RAB, GTP ANALOGUE, Structural; HET: GNP; {Homo sapiens} --GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLK-KWVKELKEHGPENIVMAIA GNKCDLSDIREVP------------LKDAKEYAESIG-AIVVETSAKNAINIEELFQGISRQIP--
##### No 57 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4D0G_A:AUTOPDB; Probability=99.8; Identities=31%; Resolution=2.5A; MatchedRegionTemplate=8-176; RAS-RELATED PROTEIN RAB-14, RAB11 FAMILY-INTERACTING; HYDROLASE, RAB14 GTPASE, ENDOSOMAL TRAFFICKING; HET: GTP; {HOMO SAPIENS} --MSYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGLERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG NKADLEAQRDVT------------YEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIYQ-
##### No 58 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3TKL_A:AUTOPDB; Probability=99.8; Identities=28%; Resolution=2.183A; MatchedRegionTemplate=18-183; Ras-related protein Rab-1A, LidA protein; Vesicle trafficking, PROTEIN TRANSPORT-PROTEIN BINDING; HET: GTP; {Homo sapiens} ----YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG NKCDLTTKKVVD------------YTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIK--
##### No 59 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1R2Q_A:AUTOPDB; Probability=99.8; Identities=29%; Resolution=1.05A; MatchedRegionTemplate=17-182; Ras-related protein Rab-5A; RAB, GTPase, GNP, atomic resolution; HET: GOL, GNP; {Homo sapiens} ----KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG NKADLANKRAVDF------------QEAQSYADD-NSLLFMETSAKTSMNVNEIFMAIAKKLP--
##### No 60 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2WWX_A:AUTOPDB; Probability=99.8; Identities=27%; Resolution=1.5A; MatchedRegionTemplate=7-174; RAS-RELATED PROTEIN RAB-1, DRRA; GOLGI APPARATUS, PROTEIN TRANSPORT, ER-GOLGI; {HOMO SAPIENS} --PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG IKCDLTTKKVVD------------YTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIK--
##### No 61 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDG-KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVP IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1KY3_A:AUTOPDB; Probability=99.8; Identities=27%; Resolution=1.35A; MatchedRegionTemplate=10-184; GTP-BINDING PROTEIN YPT7P; G PROTEIN, VESICULAR TRAFFIC, GTP; HET: GDP; {Saccharomyces cerevisiae} ---RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP FVILGNKIDAEESKKIV-----------SEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ-
##### No 62 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK-DGVREVFEMATRAALQA >3KKQ_A:AUTOPDB; Probability=99.8; Identities=30%; Resolution=1.2A; MatchedRegionTemplate=23-190; Ras-related protein M-Ras; GTP-binding, GTPase, SIGNALING PROTEIN; HET: GDP; {Mus musculus} ----NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA NKVDLMHLRKV------------TRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQ-
##### No 63 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3SFV_A:AUTOPDB; Probability=99.8; Identities=28%; Resolution=1.73A; MatchedRegionTemplate=10-176; Ras-related protein Rab-1A, LidA protein; LidA-Rab Complex, Coiled-coil domain, Type; HET: GDP; {Homo sapiens} ----YDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG NKCDLTTKKVVD------------YTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIKK-
##### No 64 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDG-KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVP IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1KY2_A:AUTOPDB; Probability=99.8; Identities=27%; Resolution=1.6A; MatchedRegionTemplate=6-180; GTP-BINDING PROTEIN YPT7P; G PROTEIN, VESICULAR TRAFFIC, GTP; HET: GNP; {Saccharomyces cerevisiae} ---RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP FVILGNKIDAEESKKIV-----------SEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ-
##### No 65 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >7BTD_A:AUTOPDB; Probability=99.8; Identities=29%; Resolution=2.0A; MatchedRegionTemplate=4-170; GTP-binding protein Rheb; mTORC1, small GTPase, Rheb, SIGNALING; HET: GNP; {Homo sapiens} ---PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSNDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG NKKDLHMERVIS------------YEEGKALAESWN-AAFLESSAKENQTAVDVFRRIILEAE--
##### No 66 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPI ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1S8F_B:AUTOPDB; Probability=99.8; Identities=30%; Resolution=1.77A; MatchedRegionTemplate=4002-4174; Ras-related protein Rab-9A; intracellular transport, vesicular trafficking, hemihedral; HET: GDP, BEZ; {Canis lupus familiaris} --AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF VILGNKIDISERQVS-------------TEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA-
##### No 67 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3MJH_A:AUTOPDB; Probability=99.8; Identities=30%; Resolution=2.03A; MatchedRegionTemplate=18-182; Ras-related protein Rab-5A (E.C.3.6.5.2), Early; PROTEIN-ZINC FINGER COMPLEX, BETA BETA; HET: GTP; {Homo sapiens} -----ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG NKADLANKRAVD------------FQEAQSYADDN-SLLFMETSAKTSMNVNEIFMAIAKKLP--
##### No 68 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5SZH_B:AUTOPDB; Probability=99.8; Identities=28%; Resolution=2.3A; MatchedRegionTemplate=5-171; MICAL C-terminal-like protein, Ras-related protein; Mical-cL, DUF3585, Mical, Rab effector; HET: GNP; {Homo sapiens} ----YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG NKSDLTTKKVVDN------------TTAKEFADSLG-IPFLETSAKNATNVEQAFMTMAAEIKK-
##### No 69 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4KLZ_A:AUTOPDB; Probability=99.8; Identities=27%; Resolution=2.3A; MatchedRegionTemplate=23-188; GTP-binding protein Rit1; small GTPase, molecular switch (GTPase); HET: GDP; {Homo sapiens} -----SREYKLVMLGAGGVGKSAMTMQFISHRFPEDHDPTIEDAYKIRIRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRRSFHEVREFKQLIYRVRRTDDTPVVLVG NKSDLKQLRQV------------TKEEGLALAREFS-CPFFETSAAYRYYIDDVFHALVREIRR-
##### No 70 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5UQW_B:AUTOPDB; Probability=99.8; Identities=31%; Resolution=1.5A; MatchedRegionTemplate=18-185; GTPase KRas (E.C.3.6.5.-); KRAS, GTPase, HYDROLASE; HET: GDP; {Homo sapiens} --GSHMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG NKCDLPSRTVDTK-------------QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRK-
##### No 71 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4DRZ_A:AUTOPDB; Probability=99.8; Identities=29%; Resolution=2.3A; MatchedRegionTemplate=31-198; Ras-related protein Rab-14; RAS, GTPASE, GTP, ONCOGENE, RAB14; HET: GDP; {Homo sapiens} ---NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG NKADLEAQRDVT------------YEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIYQ-
##### No 72 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIEVD-GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH----FCPNVP IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6HDU_A:AUTOPDB; Probability=99.8; Identities=22%; Resolution=1.793A; MatchedRegionTemplate=6-181; Ras-related protein Rab-38; Rab small GTPase, membrane trafficking; HET: GTP; {Homo sapiens} --PHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGLERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVS VVLLANKCDQGKDVLMN-N----------GLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILA-
##### No 73 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3OES_A:AUTOPDB; Probability=99.8; Identities=27%; Resolution=2.301A; MatchedRegionTemplate=23-191; GTPase RhebL1; small gtpase, Structural Genomics, Structural; HET: GNP; {Homo sapiens} --MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVG NKADLSPEREVQ------------AVEGKKLAESWG-ATFMESSARENQLTQGIFTKVIQEIAR-
##### No 74 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6BSX_B:AUTOPDB; Probability=99.8; Identities=30%; Resolution=1.65A; MatchedRegionTemplate=3-170; GTP-binding protein Rheb; mTORC1 G-protein, SIGNALING PROTEIN; HET: E7S, GDP, EDO, ACT; {Homo sapiens} --MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG NKKDLHMERVIS------------YEEGKALAESWN-AAFLESSAKENQTAVDVFRRIILEAE--
##### No 75 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3RWO_B:AUTOPDB; Probability=99.8; Identities=29%; Resolution=1.7A; MatchedRegionTemplate=12-179; GTP-binding protein YPT32/YPT11; GTPASES, PROTEIN-GDP COMPLEX, EXOCYTOSIS, GOLGI; HET: GDP; {Saccharomyces cerevisiae} ---DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIG NKSDLAHLRAVP------------TDEAKNFAMEN-QMLFTETSALNSDNVDKAFRELIVAIFQ-
##### No 76 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPII LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2IWR_A:AUTOPDB; Probability=99.8; Identities=19%; Resolution=1.5A; MatchedRegionTemplate=65-232; CENTAURIN GAMMA 1; ANK REPEAT, ZINC-FINGER, GTP-BINDING, NUCLEOTIDE-BINDING; HET: CAF; {HOMO SAPIENS} --MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALA LVGTQDRISASSPRVV----------GDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVT-
##### No 77 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1EK0_A:AUTOPDB; Probability=99.8; Identities=27%; Resolution=1.48A; MatchedRegionTemplate=6-172; GTP-BINDING PROTEIN YPT51; G PROTEIN, VESICULAR TRAFFIC, GTP; HET: GNP, GDP; {Saccharomyces cerevisiae} ------TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVG NKIDMLQEGGERKV---------AREEGEKLAEEKG-LLFFETSAKTGENVNDVFLGIGEKIP--
##### No 78 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5CM8_B:AUTOPDB; Probability=99.8; Identities=32%; Resolution=2.6A; MatchedRegionTemplate=17-182; Ral guanine nucleotide dissociation stimulator-like; Complex G-protein Exchange Factor, signaling; {Mus musculus} ----GPALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITDDESFQATQEFREQILRVKNDESIPFLLVG NKCDLNDKRKVPL------------SECQLRAQQ-WAVPYVETSAKTRENVDKVFFDLMREIR--
##### No 79 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----------- --------CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4KU4_A:AUTOPDB; Probability=99.8; Identities=30%; Resolution=1.6A; MatchedRegionTemplate=17-201; Ras-3 from Cryphonectria parasitica; small G protein, GTP/GDP binding; HET: GDP; {Cryphonectria parasitica} ----GKITDKIAMLGEGGVGKTSLTVNLTKHVFSETYDPTLEDSYRRQCVIDGIPSHLEILDTAGQEEYGALREQWIRQNELFVIVFDVTRRSSFEAAERLFEEVIQTKRKLDETRRHPG DRHPDDLPFAPSLVVLVGNKCDLDTRREVG------------TLEGSSLAKKLG-CGFVETSAKLGTNVEEAFFSVVRADRR-
##### No 80 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1ZJ6_A:AUTOPDB; Probability=99.8; Identities=18%; Resolution=2.0A; MatchedRegionTemplate=14-177; ADP-ribosylation factor-like protein 5; ARL, GTP-binding, Transport Protein; HET: SO4, G3D; {Homo sapiens} ----NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN-VEE--IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFA NKQDVKECMTV-AEISQF---------LKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL---
##### No 81 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH----FCPNVPI ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5Z2M_A:AUTOPDB; Probability=99.8; Identities=26%; Resolution=2.142A; MatchedRegionTemplate=7-179; Oxysterol-binding protein-related protein 1, Ras-related; GTPase, Effector, Complex, ENDOCYTOSIS; HET: GTP; {Mus musculus} --SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF VVLGNKIDLENRQVATKR-------------AQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK-
##### No 82 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=2-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5SZI_A:AUTOPDB; Probability=99.8; Identities=30%; Resolution=2.85A; MatchedRegionTemplate=6-174; Ras-related protein Rab-8A, MICAL C-terminal-like; Mical-cL, DUF3585, Mical, Rab effector; HET: GNP; {Homo sapiens} -AKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG NKCDVNDKRQVS------------KERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIK--
##### No 83 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4RKF_B:AUTOPDB; Probability=99.8; Identities=29%; Resolution=1.5A; MatchedRegionTemplate=35-200; Ras-related protein Rab-3; GTP hydrolysis, hydrolase; HET: 1PE, GNP; {Drosophila melanogaster} ----FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGLERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVG NKCDMEDQRVIS------------FERGRQLADQL-GVEFFETSAKENVNVKAVFERLVDIIC--
##### No 84 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1Z08_A:AUTOPDB; Probability=99.8; Identities=27%; Resolution=1.8A; MatchedRegionTemplate=19-185; Ras-related protein Rab-21; Rab GTPase, Rab21, Vesicular trafficking; HET: GNP; {Homo sapiens} ----RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVG NKIDLEKERHVS------------IQEAESYAESV-GAKHYHTSAKQNKGIEELFLDLCKRMIE-
##### No 85 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1G16_B:AUTOPDB; Probability=99.8; Identities=28%; Resolution=1.8A; MatchedRegionTemplate=20-182; RAS-RELATED PROTEIN SEC4; G protein Rab, SIGNALING PROTEIN; HET: MSE, GDP; {Saccharomyces cerevisiae} ------SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVG NKSDMETRVVTA-------------DQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQ--
##### No 86 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1G17_B:AUTOPDB; Probability=99.8; Identities=28%; Resolution=2.0A; MatchedRegionTemplate=20-182; RAS-RELATED PROTEIN SEC4; G protein Rab, SIGNALING PROTEIN; HET: GNP; {Saccharomyces cerevisiae} ------SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVG NKSDMETRVVTA-------------DQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQ--
##### No 87 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=2-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILV GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1ZBD_A:AUTOPDB; Probability=99.8; Identities=29%; Resolution=2.6A; MatchedRegionTemplate=17-185; RABPHILIN-3A, GUANOSINE-5'-TRIPHOSPHATE; G PROTEIN, EFFECTOR, RABCDR, SYNAPTIC; HET: GTP; {Rattus norvegicus} -SHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQ-DWSTQIKTYSWDNAQVLLV GNKCDMEDERVVS------------SERGRQLADHLG-FEFFEASAKDNINVKQTFERLVDVIC--
##### No 88 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH----FCPNVPI ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1WMS_B:AUTOPDB; Probability=99.8; Identities=30%; Resolution=1.25A; MatchedRegionTemplate=8-178; Ras-related protein Rab-9A; GTPase, PROTEIN TRANSPORT; HET: GDP; {Homo sapiens} ----KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF VILGNKIDISERQVST-------------EEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA-
##### No 89 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2HUP_B:AUTOPDB; Probability=99.8; Identities=27%; Resolution=2.05A; MatchedRegionTemplate=39-206; Crystal structure of human RAB43; G-PROTEIN, RAB, GDP, STRUCTURAL GENOMICS; HET: GDP; {Homo sapiens} ---QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIG NKSDLSELREVS------------LAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI--
##### No 90 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPIIL VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK-DGVREVFEMATRAALQA >3C5C_B:AUTOPDB; Probability=99.8; Identities=27%; Resolution=1.85A; MatchedRegionTemplate=34-204; RAS-like protein 12; ras, rasl12, gdp, gtpase, Structural; HET: GDP; {Homo sapiens} --FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALL LGNKLDMAQYRQVT------------KAEGVALAGRFG-CLFFEVSACLDFEHVQHVFHEAVREARR-
##### No 91 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2GF9_A:AUTOPDB; Probability=99.8; Identities=31%; Resolution=1.53A; MatchedRegionTemplate=30-198; Ras-related protein Rab-3D; G-PROTEIN, RAB, Structural Genomics, Structural; HET: GDP; {Homo sapiens} --RGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVG NKCDLEDERVVP------------AEDGRRLADDLG-FEFFEASAKENINVKQVFERLVDVICE-
##### No 92 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK-DGVREVFEMATRAALQA >1X1R_A:AUTOPDB; Probability=99.8; Identities=30%; Resolution=1.3A; MatchedRegionTemplate=19-186; Ras-related protein M-Ras; GTP-binding, SIGNALING PROTEIN; HET: GDP; {Mus musculus} ----NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA NKVDLMHLRKV------------TRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQ-
##### No 93 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4FMC_B:AUTOPDB; Probability=99.8; Identities=28%; Resolution=2.8A; MatchedRegionTemplate=8-173; ROrf2, Ras-related protein Rab-1A; alpha-beta fold, Rab1-GAP, Rab1, PROTEIN; HET: AF3, PGE, GDP; {Escherichia coli} ----YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG NKCDLTTKKVVD------------YTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIK--
##### No 94 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILV GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2P5S_B:AUTOPDB; Probability=99.8; Identities=30%; Resolution=2.15A; MatchedRegionTemplate=565-736; RAS and EF-hand domain containing; G-PROTEIN, RAB, GDP, STRUCTURAL GENOMICS; HET: GDP; {Homo sapiens} ----SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE-WVDMIEDAAHETVPIMLV GNKADIRDTAATEGQK------CVPGHFGEKLAMTY-GALFCETSAKDGSNIVEAVLHLAREVK--
##### No 95 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1Z0J_A:AUTOPDB; Probability=99.8; Identities=22%; Resolution=1.32A; MatchedRegionTemplate=3-168; Ras-related protein Rab-22A, FYVE-finger-containing Rab5; Rab Effector, Rab GTPase, Rab22; HET: GTP; {Mus musculus} -----LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAG NKCDLTDVREVM------------ERDAKDYADSIH-AIFVETSAKNAININELFIEISRRIPS-
##### No 96 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2ERY_B:AUTOPDB; Probability=99.7; Identities=30%; Resolution=1.7A; MatchedRegionTemplate=15-179; Ras-related protein R-Ras2; RRAS2, GDP/GTP binding, GTP hydrolysis; HET: GDP; {Homo sapiens} -----QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIG NKADLDHQRQVT------------QEEGQQLARQLK-VTYMEASAKIRMNVDQAFHELVRVIR--
##### No 97 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6IF3_B:AUTOPDB; Probability=99.7; Identities=31%; Resolution=1.5A; MatchedRegionTemplate=10-176; Arf-GAP with coiled-coil, ANK repeat; Rab35, ACAP2, complex, cryatal structure; HET: GTP; {Homo sapiens} --RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGLERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR-WLHEINQNCDDVCRILVG NKNDDPERKVVE------------TEDAYKFAGQMG-IQLFETSAKENVNVEEMFNCITELVL--
##### No 98 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1KAO_A:AUTOPDB; Probability=99.7; Identities=32%; Resolution=1.7A; MatchedRegionTemplate=2-166; RAP2A, GUANOSINE-5'-DIPHOSPHATE; GTP-BINDING PROTEIN, SMALL G PROTEIN; HET: GDP; {Homo sapiens} ------REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVG NKVDLESEREVS------------SSEGRALAEEWG-CPFMETSAKSKTMVDELFAEIVRQMNY-
##### No 99 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1Z08_C:AUTOPDB; Probability=99.7; Identities=27%; Resolution=1.8A; MatchedRegionTemplate=19-185; Ras-related protein Rab-21; Rab GTPase, Rab21, Vesicular trafficking; HET: GNP; {Homo sapiens} ----RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVG NKIDLEKERHVS------------IQEAESYAESV-GAKHYHTSAKQNKGIEELFLDLCKRMIE-
##### No 100 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2HUP_A:AUTOPDB; Probability=99.7; Identities=27%; Resolution=2.05A; MatchedRegionTemplate=39-207; Crystal structure of human RAB43; G-PROTEIN, RAB, GDP, STRUCTURAL GENOMICS; HET: GDP; {Homo sapiens} ---QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIG NKSDLSELREVS------------LAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM-
##### No 101 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2X77_A:AUTOPDB; Probability=99.7; Identities=18%; Resolution=2.1A; MatchedRegionTemplate=21-186; ADP-RIBOSYLATION FACTOR; GTP-BINDING PROTEIN, SMALL GTPASE, NUCLEOTIDE-BINDING; HET: GDP; {LEISHMANIA MAJOR} ---PADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTV-PTVGVNL-E--TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFA NKQDLPDAASEA-EIAE--------QLGVSSI-MNRTWTIVKSSSKTGDGLVEGMDWLVERLR--
##### No 102 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6IF2_B:AUTOPDB; Probability=99.7; Identities=30%; Resolution=2.4A; MatchedRegionTemplate=9-176; Ras-related protein Rab-35, Iporin; Rab35, RUSC2, complex, ENDOCYTOSIS; HET: GTP; {Homo sapiens} --RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGLERFRTITSTYYRGTHGVIVVYDVTSAESFVNVK-RWLHEINQNCDDVCRILVG NKNDDPERKVVE------------TEDAYKFAGQM-GIQLFETSAKENVNVEEMFNCITELVLR-
##### No 103 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1WA5_A:AUTOPDB; Probability=99.7; Identities=26%; Resolution=2.0A; MatchedRegionTemplate=12-176; GTP-BINDING NUCLEAR PROTEIN RAN, IMPORTIN; NUCLEAR TRANSPORT-COMPLEX, NUCLEAR TRANSPORT, EXPORTIN; HET: GTP; {CANIS FAMILIARIS} ---EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW-HRDLVRVCENIPIVLCG NKVDIKDRKVKA--------------KSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLIG-
##### No 104 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3NKV_A:AUTOPDB; Probability=99.7; Identities=27%; Resolution=1.7A; MatchedRegionTemplate=9-174; Ras-related protein Rab-1B; posttranslational modification, AMPylation, adenylylation, Rab1b; HET: GNP, AMP; {Homo sapiens} ----YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG NKSDLTTKKVVDN------------TTAKEFADSL-GIPFLETSAKNATNVEQAFMTMAAEIK--
##### No 105 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4HLQ_B:AUTOPDB; Probability=99.7; Identities=27%; Resolution=3.3A; MatchedRegionTemplate=8-173; TBC1 domain family member 20; Rab1b, RabGAP, Fluorides, GTPase-Activating Proteins; HET: GDP, SO4, BEF; {Homo sapiens} ----YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG NKSDLTTKKVVDN------------TTAKEFADSL-GIPFLETSAKNATNVEQAFMTMAAEIK--
##### No 106 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILV GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2ERX_A:AUTOPDB; Probability=99.7; Identities=28%; Resolution=1.65A; MatchedRegionTemplate=7-171; GTP-binding protein Di-Ras2; DIRAS2, GTP hydrolysis, TRANSPORT PROTEIN; HET: GDP, PO4; {Homo sapiens} ------NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLV GNKCDESPSREVQS------------SEAEALARTW-KCAFMETSAKLNHNVKELFQELLNLEK--
##### No 107 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2CE2_X:AUTOPDB; Probability=99.7; Identities=33%; Resolution=1.0A; MatchedRegionTemplate=2-165; GTPASE HRAS; SIGNALING PROTEIN, GUANINE NUCLEOTIDE BINDING; HET: XY2, GDP; {HOMO SAPIENS} ------TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG NKSDLAARTVESR-------------QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ-
##### No 108 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH----FCPNVPI ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1VG8_C:AUTOPDB; Probability=99.7; Identities=26%; Resolution=1.7A; MatchedRegionTemplate=3010-3181; Ras-related protein Rab-7; GTP-binding protein, PROTEIN TRANSPORT; HET: GNP; {Rattus norvegicus} ---RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF VVLGNKIDLENRQVATK-------------RAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK-
##### No 109 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILV GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2BCG_Y:AUTOPDB; Probability=99.7; Identities=27%; Resolution=1.48A; MatchedRegionTemplate=5-172; Secretory pathway GDP dissociation inhibitor; RabGTPase, geranylgeranylation, vesicular transport, Protein; HET: GER, GDP; {Saccharomyces cerevisiae} --SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKM-WLQEIDRYATSTVLKLLV GNKCDLKDKRVVEY------------DVAKEFADA-NKMPFLETSALDSTNVEDAFLTMARQIK--
##### No 110 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1Z2A_A:AUTOPDB; Probability=99.7; Identities=31%; Resolution=1.9A; MatchedRegionTemplate=10-174; Ras-related protein Rab-23; Rab GTPase, Rab23, Vesicular trafficking; HET: GDP; {Mus musculus} -----EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE-VGDIPTALVQ NKIDLLDDSCIKN------------EEAEGLAKRL-KLRFYRTSVKEDLNVSEVFKYLAEKHLQ-
##### No 111 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKD--QFPEVYVPTVFENY-VADIEVDG--KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF---CPN VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT-KDGVREVFEMATRAALQA >2YC4_C:AUTOPDB; Probability=99.7; Identities=23%; Resolution=2.8A; MatchedRegionTemplate=22-198; INTRAFLAGELLAR TRANSPORT PROTEIN 25, SMALL; TRANSPORT PROTEIN, CILIUM, IFT COMPLEX; {CHLAMYDOMONAS REINHARDTII} ---TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERP LRAVLVANKTDLPPQRHQ-----------VRLDMAQDWATTNT-LDFFDVSANPPGKDADAPFLSIATTFYR-
##### No 112 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1Z22_A:AUTOPDB; Probability=99.7; Identities=31%; Resolution=2.06A; MatchedRegionTemplate=10-174; Ras-related protein Rab-23; Rab GTPase, Rab23, Vesicular transport; HET: GDP; {Mus musculus} -----EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVA-EVGDIPTALVQ NKIDLLDDSCIKN------------EEAEGLAKRL-KLRFYRTSVKEDLNVSEVFKYLAEKHLQ-
##### No 113 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5JCZ_I:AUTOPDB; Probability=99.7; Identities=28%; Resolution=2.056A; MatchedRegionTemplate=19-186; Ras-related protein Rab-11A, Unconventional myosin-Va; myosin, complex, Rab, motor cargo; HET: EDO, GOL, BEF, GDP; {Homo sapiens} ---EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG NKSDLRHLRAVP------------TDEARAFAEKNG-LSFIETSALDSTNVEAAFQTILTEIYR-
##### No 114 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3BBP_C:AUTOPDB; Probability=99.7; Identities=29%; Resolution=3.0A; MatchedRegionTemplate=27-190; Ras-related protein Rab-6A, GRIP and; Golgi complex GRIP domain; HET: GTP; {Homo sapiens} -----LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVG NKTDLADKRQVS------------IEEGERKAKEL-NVMFIETSAKAGYNVKQLFRRVAAAL---
##### No 115 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV----------YVPTVFENYV-ADI-EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDS------PDSLENIPEKW TPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3T1T_A:AUTOPDB; Probability=99.7; Identities=27%; Resolution=1.9A; MatchedRegionTemplate=11-193; Gliding protein mglA (E.C.3.6.5.2); G domain containg protein, bacterial; HET: GDP; {Thermus thermophilus} ---NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE-N LAEYGLTLDDVPIVIQVNKRDLPDALPV--------------EMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA-
##### No 116 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=2-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPI ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4QXA_A:AUTOPDB; Probability=99.7; Identities=31%; Resolution=2.3A; MatchedRegionTemplate=7-180; Ras-related protein Rab-9A, Small G; PH domain, Rab9A, RUTBC2, Rab; HET: GTP; {Mus musculus} -MAGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGLERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF VILGNKTDIKERQVST-------------EEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILA-
##### No 117 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1UKV_Y:AUTOPDB; Probability=99.7; Identities=25%; Resolution=1.5A; MatchedRegionTemplate=6-172; Secretory pathway GDP dissociation inhibitor/GTP-binding; GTPase, Hydrolase, GDP dissociation inhibitor; HET: GER, GDP; {Saccharomyces cerevisiae} ---EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG NKCDLKDKRVVE------------YDVAKEFADAN-KMPFLETSALDSTNVEDAFLTMARQIK--
##### No 118 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV----------YVPTVFENYV-ADI-EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDS------PDSLENIPEKW TPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3T1O_B:AUTOPDB; Probability=99.7; Identities=27%; Resolution=1.9A; MatchedRegionTemplate=12-194; Gliding protein mglA (E.C.3.6.5.2); G domain containing protein, bacterial; HET: GDP; {Thermus thermophilus} ---NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE-N LAEYGLTLDDVPIVIQVNKRDLPDALPV--------------EMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA-
##### No 119 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV----------YVPTVFENYV-ADI-EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDS------PDSLENIPEKW TPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3T1T_C:AUTOPDB; Probability=99.7; Identities=27%; Resolution=1.9A; MatchedRegionTemplate=18-200; Gliding protein mglA (E.C.3.6.5.2); G domain containg protein, bacterial; HET: MSE, GDP; {Thermus thermophilus} ---NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE-N LAEYGLTLDDVPIVIQVNKRDLPDALPV--------------EMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA-
##### No 120 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG------VREVFEMATRAALQA >4M9Q_B:AUTOPDB; Probability=99.7; Identities=17%; Resolution=2.5A; MatchedRegionTemplate=19-186; ARF-like GTPase (E.C.3.6.5.2); GTPase, G domain, Joubert Syndrome; HET: GNP, SO4; {Chlamydomonas reinhardtii} -----PRKITIALLGLDNAGKTTLLNSIQGEVDRD-TTPTFGFN---STTLNEGKYKIEVFDLGGGKNIRGVWKKYLAEVHAIVYVVDAADPGRFEESKMTMAEVLENQFMRDKPICIFA NKQDLPTAAPAAEVVKG---------LGLATC--RNSHNVFPCTAKMPAGQDVDHRLRDGLKWLVGTV---
##### No 121 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3GJ0_B:AUTOPDB; Probability=99.7; Identities=26%; Resolution=1.48A; MatchedRegionTemplate=17-181; GTP-binding nuclear protein Ran; G Protein, GDP, Acetylation, Cytoplasm; HET: GDP; {Homo sapiens} --GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVCENIPIVLCG NKVDIKDRKVKA--------------KSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLI--
##### No 122 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4ILE_A:AUTOPDB; Probability=99.7; Identities=20%; Resolution=2.676A; MatchedRegionTemplate=25-189; ADP-ribosylation factor-like protein 8A; GTPase, MEMBRANE TRAFFICKING, TRANSPORT PROTEIN; HET: GDP; {Homo sapiens} ----WKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFN-MRK--ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLG NKRDLPGALDEKELIEK---------MNLSAIQD-REICCYSISCKEKDNIDITLQWLIQHS---
##### No 123 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKD--QFPEVYVPTVFENY-VADIEVDG--KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF---CPN VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT-KDGVREVFEMATRAALQA >2YC2_D:AUTOPDB; Probability=99.7; Identities=23%; Resolution=2.588A; MatchedRegionTemplate=23-199; INTRAFLAGELLAR TRANSPORT PROTEIN 25, SMALL; TRANSPORT PROTEIN, CILIUM, IFT COMPLEX; {CHLAMYDOMONAS REINHARDTII} ---TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERP LRAVLVANKTDLPPQRHQ-----------VRLDMAQDWATTNT-LDFFDVSANPPGKDADAPFLSIATTFYR-
##### No 124 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPII LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6VBV_3:AUTOPDB; Probability=99.7; Identities=15%; Resolution=3.5A; MatchedRegionTemplate=30-199; Bardet-Biedl syndrome 18 protein, BBS1; Cilia, ciliopathy, complex, membrane-protein transport; HET: GTP; {Bos taurus} ----KKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQDIVPTIGFSI-Q--KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDKLRMVVAKEELRTLLNHPDIKHRRIPIL FFANKMDLRDALTS-VKVSQLL--------CLEDIKD-KPWHICASDAIKGEGLQEGVDWLQDQIQS-
##### No 125 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3DOE_A:AUTOPDB; Probability=99.7; Identities=15%; Resolution=2.25A; MatchedRegionTemplate=13-178; ADP-ribosylation factor-like protein 2, ADP-ribosylation; ADP-ribosylation factor-like 2, binder of; HET: GTP; {Homo sapiens} ---QKERELRLLMLGLDNAGKTTILKKFNGEDIDTI-SPTLGFN---IKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFA NKQDLPGALSS-NAIREV-------L-ELDSIRS-HHWCIQGCSAVTGENLLPGIDWLLDDIS--
##### No 126 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2WKP_A:AUTOPDB; Probability=99.7; Identities=57%; Resolution=1.9A; MatchedRegionTemplate=555-733; NPH1-1, RAS-RELATED C3 BOTULINUM TOXIN; TRANSFERASE, CELL ADHESION, GTPASE, SMALL; HET: GTP, FMN; {AVENA SATIVA, HOMO SAPIENS} ----AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGT KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC-
##### No 127 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1Z6Y_A:AUTOPDB; Probability=99.7; Identities=19%; Resolution=2.4A; MatchedRegionTemplate=14-179; ADP-ribosylation factor-like protein 5; GDP-Binding, Membrane Trafficking, Structural Genomics; HET: GDP; {Homo sapiens} ---FNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSN-VEEIVI--NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFA NKQDVKECMTV-AEISQFLK---------LTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK--
##### No 128 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6O62_A:AUTOPDB; Probability=99.7; Identities=28%; Resolution=1.88A; MatchedRegionTemplate=19-184; Ras-related protein SEC4; G-PROTEIN, RAB, GDP, P-LOOP, GTPASE; HET: GDP; {Candida albicans (strain SC5314 / ATCC MYA-2876)} ----YDMIMKLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVG NKCDDEVNRQVS------------KEQGQELAAKLN-VPFLEASAKSNENVDSIFYELASIIQ--
##### No 129 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3IHW_A:AUTOPDB; Probability=99.7; Identities=19%; Resolution=1.92A; MatchedRegionTemplate=103-266; CENTG3; ras, centaurin, gtpase, Structural Genomics; {Homo sapiens} ----QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVG TQDAISAANPR--VI--------DDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVA-
##### No 130 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYMECSAKTKDGVREVFEMATRAALQA >5KUT_B:AUTOPDB; Probability=99.7; Identities=15%; Resolution=1.693A; MatchedRegionTemplate=412-575; Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GDP; {Homo sapiens} ---TQRSVLLCKVVGACGVGKSAFLQAFLGRGLGHQDTREQPPGYAIDTVQVNGQEKYLILCEVGTDG---LLATSLDATCDVACLMFDGSDPKSFAHCASVYKHHYM--DGQTPCLFVS SKADLPEGVAV------------SGPSPAEFCRKHRLPAPVPFSCAGPAEPSTTIFTQLATMAA--
##### No 131 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILV GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6HUF_H:AUTOPDB; Probability=99.7; Identities=28%; Resolution=2.82A; MatchedRegionTemplate=13-180; Ras-related protein Rab-27A; GTPase, Exocytosis, Vesicle transport; HET: GNP, MG; {Homo sapiens} ----YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKTIYRNDKRIKLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEESFLNVRNWISQLKTHAYSENPDIVLC GNKSDLEDERVVA------------AAEARQLAEHYG-IPYFETSAANGTNISQAIEMLLDLIMK-
##### No 132 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILV GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6HUF_P:AUTOPDB; Probability=99.7; Identities=28%; Resolution=2.82A; MatchedRegionTemplate=13-180; Ras-related protein Rab-27A; GTPase, Exocytosis, Vesicle transport; HET: GNP, MG; {Homo sapiens} ----YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKTIYRNDKRIKLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEESFLNVRNWISQLKTHAYSENPDIVLC GNKSDLEDERVVA------------AAEARQLAEHYG-IPYFETSAANGTNISQAIEMLLDLIMK-
##### No 133 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2MMG_A:AUTOPDB; Probability=99.7; Identities=26%; Resolution=NMR; MatchedRegionTemplate=5-170; GTP-binding nuclear protein Ran; G-protein, nucleotide binding, GTP binding; {Homo sapiens} --GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCG NKVDIKDRKVKA--------------KSIVFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLIG-
##### No 134 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYMECSAKTKDGVREVFEMATRAALQA >5KUT_A:AUTOPDB; Probability=99.7; Identities=15%; Resolution=1.693A; MatchedRegionTemplate=412-575; Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GDP; {Homo sapiens} ---TQRSVLLCKVVGACGVGKSAFLQAFLGRGLGHQDTREQPPGYAIDTVQVNGQEKYLILCEVGTDG---LLATSLDATCDVACLMFDGSDPKSFAHCASVYKHHYM--DGQTPCLFVS SKADLPEGVAV------------SGPSPAEFCRKHRLPAPVPFSCAGPAEPSTTIFTQLATMAA--
##### No 135 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2X77_B:AUTOPDB; Probability=99.7; Identities=19%; Resolution=2.1A; MatchedRegionTemplate=20-185; ADP-RIBOSYLATION FACTOR; GTP-BINDING PROTEIN, SMALL GTPASE, NUCLEOTIDE-BINDING; HET: GDP; {LEISHMANIA MAJOR} ---PADRKIRVLMLGLDNAGKTSILYRLHLGDVVTT-VPTVGVNL-E--TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFA NKQDLPDAASEA-EIAE----QL----GVSSI-MNRTWTIVKSSSKTGDGLVEGMDWLVERLR--
##### No 136 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2Y8E_A:AUTOPDB; Probability=99.7; Identities=28%; Resolution=1.39A; MatchedRegionTemplate=20-185; RAB-PROTEIN 6; HYDROLASE, NUCLEOTIDE BINDING, GTP BINDING; HET: SO4, GNP; {DROSOPHILA MELANOGASTER} ----PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVG NKTDLSDKRQVS------------TEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAALP--
##### No 137 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDG-KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVP IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4CZ2_C:AUTOPDB; Probability=99.7; Identities=22%; Resolution=2.97A; MatchedRegionTemplate=47-219; RAS-RELATED PROTEIN RAB-32, ANKYRIN REPEAT; SIGNALING PROTEIN, VARP, RAB-EFFECTOR, RAB; HET: MSE, GCP; {HOMO SAPIENS} ---TREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGLERFGNMTRVYYKEAMGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIP AVLLANKCDQNKDSSM------------SPSQMDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKML--
##### No 138 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2BME_A:AUTOPDB; Probability=99.7; Identities=29%; Resolution=1.57A; MatchedRegionTemplate=9-176; RAS-RELATED PROTEIN RAB4A (E.C.3.6.5.2); GTP-BINDING PROTEIN, VESICULAR TRANSPORT, ENDOCYTOSIS; HET: GNP, TRS; {HOMO SAPIENS} ---TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG NKKDLDADREVT------------FLEASRFAQEN-ELMFLETSALTGENVEEAFVQCARKILN-
##### No 139 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5C1S_A:AUTOPDB; Probability=99.7; Identities=19%; Resolution=3.1A; MatchedRegionTemplate=238-398; Small GTPase EhRabX3; P-loop containing nucleotide triphosphate hydrolases; HET: MSE, GDP; {Entamoeba histolytica} -----DIKIRMLMVGDQNVGKTTFIRKFALQDPTGHDFM---NAITTRFEMEKIKYEIIMIDWGFYNKLLQTNPAISRTIEAILIVYDITNEESFQNIHRKYYPLINNKFSDVAGVIVGY KTDLEAQRKI------------TMGDALTLADWLG-YKYVEMSSKDTEDHSSIIKALAHSIR--
##### No 140 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4HAT_A:AUTOPDB; Probability=99.7; Identities=26%; Resolution=1.78A; MatchedRegionTemplate=12-176; GTP-binding nuclear protein Ran, Ran-specific; HEAT repeat, nuclear export, Ran-RanBP1; HET: GOL, LMB, GNP, EDO; {Homo sapiens} --GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW-HRDLVRVCENIPIVLCG NKVDIKDRKVKAK--------------SIVFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLI--
##### No 141 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2O52_A:AUTOPDB; Probability=99.7; Identities=28%; Resolution=2.2A; MatchedRegionTemplate=24-192; Crystal structure of human RAB4B; G-PROTEIN, RAB, GDP, STRUCTURAL GENOMICS; HET: GDP; {Homo sapiens} --IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCG NKKDLDPEREVT------------FLEASRFAQENE-LMFLETSALTGENVEEAFLKCARTILN-
##### No 142 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDG-KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVP IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4CZ2_B:AUTOPDB; Probability=99.7; Identities=22%; Resolution=2.97A; MatchedRegionTemplate=46-218; RAS-RELATED PROTEIN RAB-32, ANKYRIN REPEAT; SIGNALING PROTEIN, VARP, RAB-EFFECTOR, RAB; HET: GCP; {HOMO SAPIENS} ---TREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGLERFGNMTRVYYKEAMGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIP AVLLANKCDQNKDSSM------------SPSQMDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKML--
##### No 143 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2WKQ_A:AUTOPDB; Probability=99.7; Identities=57%; Resolution=1.6A; MatchedRegionTemplate=557-734; NPH1-1, RAS-RELATED C3 BOTULINUM TOXIN; TRANSFERASE, CELL ADHESION, NUCLEOTIDE-BINDING, PROTEIN; HET: FMN, GTP; {AVENA SATIVA, HOMO SAPIENS} -----KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGT KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC-
##### No 144 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=8-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1O3Y_A:AUTOPDB; Probability=99.7; Identities=18%; Resolution=1.5A; MatchedRegionTemplate=17-178; ADP-ribosylation factor 1; PROTEIN TRANSPORT; HET: GTP; {Mus musculus} -------SMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGF---NVETVEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFA NKQDLPNAMNAAEITDK---------LGLHSLR-HRNWYIQATCATSGDGLYEGLDWLSNQLR--
##### No 145 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3DZ8_A:AUTOPDB; Probability=99.7; Identities=30%; Resolution=1.9A; MatchedRegionTemplate=28-195; Crystal structure of human Rab3B; ras, gdp, gtpase, structural genomics; HET: GDP; {Homo sapiens} ---NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVG NKCDMEEERVVPT------------EKGQLLAEQLG-FDFFEASAKENISVRQAFERLVDAICD-
##### No 146 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3RAB_A:AUTOPDB; Probability=99.7; Identities=29%; Resolution=2.0A; MatchedRegionTemplate=20-184; RAB3A; G PROTEIN, VESICULAR TRAFFICKING, GTP; HET: GNP; {Rattus norvegicus} -----DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG NKCDMEDERVVS------------SERGRQLADHLG-FEFFEASAKDNINVKQTFERLVDVIC--
##### No 147 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3CPJ_B:AUTOPDB; Probability=99.7; Identities=27%; Resolution=2.35A; MatchedRegionTemplate=18-185; Rab GDP-dissociation inhibitor, GTP-binding protein; Rab GTPase, prenylation, vesicular transport; HET: GDP; {Saccharomyces cerevisiae} ---DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIG NKSDLAHLRAVP------------TEESKTFAQENQ-LLFTETSALNSENVDKAFEELINTIYQ-
##### No 148 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVD-GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVP IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6S5H_A:AUTOPDB; Probability=99.7; Identities=22%; Resolution=2.0A; MatchedRegionTemplate=4-179; Ras-related protein Rab-38; GTPase, Ras-related protein Rab-38, Structural; HET: GTP, EDO; {Homo sapiens} --PHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVS VVLLANKCDQGKDVLMN-----------NGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILA-
##### No 149 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=8-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6BOF_B:AUTOPDB; Probability=99.7; Identities=31%; Resolution=1.401A; MatchedRegionTemplate=3-165; GTPase KRas; HYDROLASE, small gtpase, signal transduction; HET: GDP; {Homo sapiens} -------EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG NKCDLPSRTVDT-------------KQAQDLARSYG-IPFIETSTKTRQGVDDAFYTLVREIRK-
##### No 150 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5WDQ_A:AUTOPDB; Probability=99.7; Identities=32%; Resolution=1.25A; MatchedRegionTemplate=4-169; GTPase HRas (E.C.3.6.5.2); small G-protein, GTPase, ONCOPROTEIN, HYDROLASE; HET: GNP, ACT; {Homo sapiens} ----HMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG NKCDAAARTVES-------------RQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ-
##### No 151 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIE-VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5XC5_A:AUTOPDB; Probability=99.7; Identities=19%; Resolution=1.398A; MatchedRegionTemplate=7-173; Probable Rab-related GTPase; Rab GTPase, Acanthamoeba polyphaga mimivirus; HET: ACT, GTP; {Acanthamoeba polyphaga mimivirus} -----NNGYKIILIGSSGVGKSSIVHQFLFNRKISNVSPTIGAAFASKQVIAKNGKTLKLNIWDTAGLERFRSITKMYYTNSLGCLVVFDVTDRESFDDVYYWINDLRINCHTTYYILVV ANKIDIDKNNWR-V----------SENEIKKFCRDND-CDYVFASSFESDTVNNLFGKMIDKMS--
##### No 152 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1OIX_A:AUTOPDB; Probability=99.7; Identities=29%; Resolution=1.7A; MatchedRegionTemplate=30-195; RAS-RELATED PROTEIN RAB-11A; SMALL G PROTEIN, INTRACELLULAR TRAFFICKING; HET: GDP; {HOMO SAPIENS} ---EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG NKSDLRHLRAVP------------TDEARAFAEKNG-LSFIETSALDSTNVEAAFQTILTEI---
##### No 153 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2IL1_A:AUTOPDB; Probability=99.7; Identities=26%; Resolution=2.1A; MatchedRegionTemplate=154-323; predicted human GTPase in complex; G-PROTEIN, RAB, GDP, GTPASE, PREDICTED; HET: GDP; {Homo sapiens} --RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG NKLDCETDREIT------------RQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK-
##### No 154 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2BOV_A:AUTOPDB; Probability=99.7; Identities=33%; Resolution=2.66A; MatchedRegionTemplate=21-186; RAS-RELATED PROTEIN RAL-A, MONO-ADP-RIBOSYLTRANSFERASE C3; C3BOT, EXOENZYME, RALA, GTPASE, ADP; HET: GDP; {HOMO SAPIENS} ----SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG NKSDLEDKRQVS------------VEEAKNRAEQWN-VNYVETSAKTRANVDKVFFDLMREIR--
##### No 155 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6IY1_C:AUTOPDB; Probability=99.7; Identities=29%; Resolution=2.11A; MatchedRegionTemplate=10-172; Ras-related protein Rab-11A; Complex, transport, GTPase, TRANSPORT PROTEIN; HET: GDP; {Homo sapiens} ------YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG NKSDLRHLRAVP------------TDEARAFAEKNG-LSFIETSALDSTNVEAAFQTILTEI---
##### No 156 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH--FCPNVPIILV GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD-GVREVFEMATRAALQA >2ATV_A:AUTOPDB; Probability=99.7; Identities=28%; Resolution=1.9A; MatchedRegionTemplate=27-195; RAS-like estrogen-regulated growth inhibitor; RERG, GDP/GTP binding, GTP hydrolysis; HET: GDP; {Homo sapiens} --MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILV GNKADLDHSRQVS------------TEEGEKLATELA-CAFYECSACTGEGNITEIFYELCREVRR-
##### No 157 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIE----------VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF -CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3BC1_A:AUTOPDB; Probability=99.7; Identities=28%; Resolution=1.8A; MatchedRegionTemplate=11-187; Ras-related protein Rab-27A (E.C.3.6.5.2), Synaptotagmin-like; Rab27, GTPase, Rab, signaling protein; HET: GNP; {Mus musculus} ----YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA YSENPDIVLCGNKSDLEDQRAVK------------EEEARELAEKYG-IPYFETSAANGTNISHAIEMLLDLIM--
##### No 158 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2H17_A:AUTOPDB; Probability=99.7; Identities=19%; Resolution=1.7A; MatchedRegionTemplate=33-195; Structure of human ADP-ribosylation factor-like; GDP, GTPASE, MEMBRANE TRAFFICKING, STRUCTURAL; HET: GDP; {Homo sapiens} ----GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSN-VEE--IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFA NKQDVKECMTV-AEISQFLK----L---TSI--KDHQWHIQACCALTGEGLCQGLEWMMSR----
##### No 159 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVD-GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIIL VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6S5F_A:AUTOPDB; Probability=99.7; Identities=28%; Resolution=1.7A; MatchedRegionTemplate=7-177; Ras-related protein Rab-39B; GTPase, Ras-related protein Rab-39B, GMPPNP; HET: GNP; {Homo sapiens} --AIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVL VGHKCDLDTQRQVT------------RHEAEKLAAAYG-MKYIETSARDAINVEKAFTDLTRDIYE-
##### No 160 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV----------YVPTVFENYV-ADI-EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID------SPDSLENIPEKW TPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6H17_A:AUTOPDB; Probability=99.7; Identities=26%; Resolution=1.275A; MatchedRegionTemplate=10-190; Mutual gliding-motility protein MglA; GTPase, motility, CYTOSOLIC PROTEIN; HET: SO4, GSP; {Myxococcus xanthus DK 1622} ----REINCKIVYYGPGLCGKTTNLQYIYNKTAAETKGKLISLSTETDRTLFFDFLPLSLGEIRGFKTRFHLYTVPGQVFYDASRKLILKGVDGVVFVADSQIERMEANMESLENLRI-N LAEQGYDLNKIPYVIQYNKRDLPNAVT--------------VEEMRKALNHRN-IPEYQAVAPTGVGVFDTLKAVAKLVLT-
##### No 161 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2G6B_A:AUTOPDB; Probability=99.7; Identities=30%; Resolution=2.0A; MatchedRegionTemplate=64-230; Ras-related protein Rab-26; G-PROTEIN, RAB, GTP ANALOGUE, Structural; HET: GNP; {Homo sapiens} ----YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLL GNKVDSAHERVVK------------REDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAKELK--
##### No 162 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5XCO_A:AUTOPDB; Probability=99.7; Identities=31%; Resolution=1.25A; MatchedRegionTemplate=2-165; B-cell lymphoma 6 protein, F1324; Hydrolase, Complex, Inhibitor, Small GTPase; HET: GDP; {Homo sapiens} -----MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG NKCDLPSRTVDTK-------------QAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREIR--
##### No 163 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVK--PEEGRDM-ANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2FA9_B:AUTOPDB; Probability=99.7; Identities=20%; Resolution=2.5A; MatchedRegionTemplate=25-200; GTP-binding protein SAR1b; Sar1H79G mutant, PROTEIN TRANSPORT; HET: GDP, SO4; {Cricetulus griseus} ----YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHP-TSEELT--IAGMTFTTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILG NKIDRPEAISE-ERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI---
##### No 164 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6V5L_A:AUTOPDB; Probability=99.7; Identities=32%; Resolution=NMR; MatchedRegionTemplate=2-165; GTPase KRas; KRas, allosteric inhibitor, drug discovery; HET: GDP, QPD, MG; {Homo sapiens} ------TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG NKCDLPSRTVDTK-------------QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRK-
##### No 165 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5E95_A:AUTOPDB; Probability=99.7; Identities=34%; Resolution=1.402A; MatchedRegionTemplate=1-165; Mb(NS1), GTPase HRas; H-Ras, Monobody, Inhibitor, Complex, SIGNALING; HET: GDP; {Homo sapiens} -----MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG NKCDLAARTVESR-------------QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ-
##### No 166 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2GZH_A:AUTOPDB; Probability=99.7; Identities=28%; Resolution=2.47A; MatchedRegionTemplate=12-177; Ras-related protein Rab-11A (E.C.3.6.5.2), RAB11-FIP2; Ras-like G protein fold, a-helical; HET: GTP, MSE; {Homo sapiens} ---EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG NKSDLRHLRAVP------------TDEARAFAEKN-GLSFIETSALDSTNVEAAFQTILTEI---
##### No 167 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILV GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4V0L_A:AUTOPDB; Probability=99.7; Identities=18%; Resolution=2.197A; MatchedRegionTemplate=14-180; ARF-LIKE SMALL GTPASE; HYDROLASE; HET: GTP; {CHLAMYDOMONAS REINHARDTII} ---AASKKVNVLVVGLDNSGKTTIIERLKPRPRQAAEVAPTVG---FTVDEVEKGPLTFTVFDMSGAGRYRTLWEQYYREADAVVFVVDSADKLRMVVARDEMEHMLKHSNMRKVPILYF ANKKDLPVAMPPVEIAQALG---------LDDI-KDRPWQIVPSNGLTGEGVDKGIDWLAERL---
##### No 168 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=2-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQ--FPEVYVPTVFENY-VADIEVD-----------GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV KHF------------CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK-TKDGVREVFEMATRAALQA >6IA7_B:AUTOPDB; Probability=99.7; Identities=16%; Resolution=2.3A; MatchedRegionTemplate=8-202; Intraflagellar transport protein 22; Intraflagellar transport protein 22, cilium; HET: GTP; {Trypanosoma brucei brucei (strain 927/4 GUTat10.1)} -ASMSDDLVKILVLGPSKSGKSTVTNFLAGTRDTPTKEYHETNPLRVLEVEIALDDTRRSGRQAAGLKKAVVQLWDVGGSSKHQAGWPAIASNADGIIYVFNPEVKGSEKELLLWYKNFA LNQDELDDDNNFKMRVTDGHSLIFSHHSSLPEFAVG-------------DNAIPPMPKQLQGIRALETSLDYQSDNFKEAFDALVEQII--
##### No 169 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=2-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQ--FPEVYVPTVFENY-VADIEVD-----------GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV KHF------------CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK-TKDGVREVFEMATRAALQA >6IAE_A:AUTOPDB; Probability=99.7; Identities=16%; Resolution=2.49A; MatchedRegionTemplate=5-199; Intraflagellar transport protein 22; Intraflagellar transport protein 22, cilium; HET: GTP; {Trypanosoma brucei brucei (strain 927/4 GUTat10.1)} -ASMSDDLVKILVLGPSKSGKSTVTNFLAGTRDTPTKEYHETNPLRVLEVEIALDDTRRSGRQAAGLKKAVVQLWDVGGSSKHQAGWPAIASNADGIIYVFNPEVKGSEKELLLWYKNFA LNQDELDDDNNFKMRVTDGHSLIFSHHSSLPEFAVG-------------DNAIPPMPKQLQGIRALETSLDYQSDNFKEAFDALVEQII--
##### No 170 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIIL VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2NZJ_B:AUTOPDB; Probability=99.7; Identities=28%; Resolution=2.5A; MatchedRegionTemplate=1-168; GTP-binding protein REM 1; REM1, GDP/GTP binding, GTP hydrolysis; HET: GDP; {Homo sapiens} -----MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIIL VGNKADLARCREVSV------------EEGRACAVVF-DCKFIETSATLQHNVAELFEGVVRQLRL-
##### No 171 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=8-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLEDYDR-LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIIL VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3Q85_A:AUTOPDB; Probability=99.7; Identities=28%; Resolution=1.757A; MatchedRegionTemplate=115-280; GTP-binding protein REM 2; G-domain, G-protein, Cav2 beta, SIGNALING; HET: GNP; {Mus musculus} -------VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL VGNKSDLARSREVS------------LEEGRHLAGTLS-CKHIETSAALHHNTRELFEGAVRQIRL-
##### No 172 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKP-EEG-RD-MANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1F6B_A:AUTOPDB; Probability=99.7; Identities=21%; Resolution=1.7A; MatchedRegionTemplate=34-209; SAR1; GTPASES, N-TERMINAL HELIX, MG-CONTAINING COMPLEX; HET: GDP, SO4; {Cricetulus griseus} ----YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLH-PTSEELT--IAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILG NKIDRPEAISE-ERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI---
##### No 173 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=8-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLEDYDR-LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIIL VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3Q85_B:AUTOPDB; Probability=99.7; Identities=28%; Resolution=1.757A; MatchedRegionTemplate=115-280; GTP-binding protein REM 2; G-domain, G-protein, Cav2 beta, SIGNALING; HET: GNP; {Mus musculus} -------VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL VGNKSDLARSREVS------------LEEGRHLAGTLS-CKHIETSAALHHNTRELFEGAVRQIRL-
##### No 174 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVD----------GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF -CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2ZET_A:AUTOPDB; Probability=99.7; Identities=29%; Resolution=3.0A; MatchedRegionTemplate=13-188; Ras-related protein Rab-27B, Melanophilin; COMPLEX, GTP-BINDING PROTEIN, GTPASE, G-PROTEIN; HET: SO4, GTP; {Mus musculus} -----DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA YCENPDIVLIGNKADLPDQREVN------------ERQARELAEKYG-IPYFETSAATGQNVEKSVETLLDLIM--
##### No 175 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIE-VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5XC3_A:AUTOPDB; Probability=99.7; Identities=19%; Resolution=1.497A; MatchedRegionTemplate=7-173; Probable Rab-related GTPase; Rab GTPase, Acanthamoeba polyphaga mimivirus; HET: GDP; {Acanthamoeba polyphaga mimivirus} -----NNGYKIILIGSSGVGKSSIVHQFLFNRKISNVSPTIGAAFASKQVIAKNGKTLKLNIWDTAGQERFRSITKMYYTNSLGCLVVFDVTDRESFDDVYYWINDLRINCHTTYYILVV ANKIDIDKNNWR-----------VSENEIKKFCRDND-CDYVFASSFESDTVNNLFGKMIDKMS--
##### No 176 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGLEDYD-RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIIL VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT---KDGVREVFEMATRAALQA >6ZAY_A:AUTOPDB; Probability=99.7; Identities=26%; Resolution=2.4A; MatchedRegionTemplate=33-203; Ras-related protein Rab-33B, Autophagy-related protein; ATG16L autophagy autophagosome; HET: PO4, GDP, EDO, PEG; {Homo sapiens} ----RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRIL VGNKCDLRSAIQVPT------------DLAQKFADTH-SMPLFETSAKNPNDNDHVEAIFMTLAHKLK--
##### No 177 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIIL VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6D71_A:AUTOPDB; Probability=99.7; Identities=25%; Resolution=1.71807785325A; MatchedRegionTemplate=12-177; Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); GTPase, mitochondria, Miro, Rho, GEM1P; HET: GTP; {Homo sapiens} ------KDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEI-TIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLIL VGNKSDLVEYSSME-TILP---------IM---NQYTEIETCVECSAKNLKNISELFYYAQKAVLH-
##### No 178 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIIL VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6D71_B:AUTOPDB; Probability=99.7; Identities=25%; Resolution=1.71807785325A; MatchedRegionTemplate=11-176; Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); GTPase, mitochondria, Miro, Rho, GEM1P; HET: GTP; {Homo sapiens} -----KKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEI-TIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLIL VGNKSDLVEYSSMET-IL---------PI---MNQYTEIETCVECSAKNLKNISELFYYAQKAVL--
##### No 179 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLR--PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIIL VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2NZJ_A:AUTOPDB; Probability=99.7; Identities=28%; Resolution=2.5A; MatchedRegionTemplate=1-168; GTP-binding protein REM 1; REM1, GDP/GTP binding, GTP hydrolysis; HET: GDP; {Homo sapiens} -----MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIIL VGNKADLARCREVSV------------EEGRACAVVF-DCKFIETSATLQHNVAELFEGVVRQLRL-
##### No 180 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2F9L_A:AUTOPDB; Probability=99.7; Identities=29%; Resolution=1.55A; MatchedRegionTemplate=8-173; RAB11B, member RAS oncogene family; Rab11b GTPase, vesicle transport, HYDROLASE; HET: GDP; {Homo sapiens} ----YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG NKSDLRHLRAVP------------TDEARAFAEKNN-LSFIETSALDSTNVEEAFKNILTEIY--
##### No 181 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2F9M_A:AUTOPDB; Probability=99.7; Identities=29%; Resolution=1.95A; MatchedRegionTemplate=8-173; RAB11B, member RAS oncogene family; Rab11b GTPase, vesicle transport, HYDROLASE; HET: GNP; {Homo sapiens} ----YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG NKSDLRHLRAVP------------TDEARAFAEKNN-LSFIETSALDSTNVEEAFKNILTEIY--
##### No 182 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1MOZ_B:AUTOPDB; Probability=99.7; Identities=18%; Resolution=3.17A; MatchedRegionTemplate=16-180; ADP-ribosylation factor-like 1 (ARL1) from; GTP-BINDING, PROTEIN BINDING; HET: GDP; {Saccharomyces cerevisiae} ----SNKELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFN-V--ETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFA NKQDQPGALSASE-VSK--------ELNLVELKD-RSWSIVASSAIKGEGITEGLDWLIDVIK--
##### No 183 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2EFE_D:AUTOPDB; Probability=99.7; Identities=31%; Resolution=2.08A; MatchedRegionTemplate=15-181; Similarity to vacuolar protein sorting-associated; GEF, GTPase, Vps9, Rab5, nucleotide; HET: GNH; {Arabidopsis thaliana} ---NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAG NKSDLLDARKV------------TAEDAQTYAQENG-LFFMETSAKTATNVKEIFYEIARRLP--
##### No 184 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2EFH_B:AUTOPDB; Probability=99.7; Identities=31%; Resolution=2.1A; MatchedRegionTemplate=15-181; Similarity to vacuolar protein sorting-associated; GEF, GTPase, Vps9, Rab5, nucleotide; HET: GDP; {Arabidopsis thaliana} ---NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAG NKSDLLDARKV------------TAEDAQTYAQENG-LFFMETSAKTATNVKEIFYEIARRLP--
##### No 185 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4G01_B:AUTOPDB; Probability=99.7; Identities=31%; Resolution=2.2A; MatchedRegionTemplate=15-181; Vacuolar protein sorting-associated protein 9A; GTPase-GDP-metal-GEF complex, vps9 domain, Ras; HET: GDP; {Arabidopsis thaliana} ---NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAG NKSDLLDARKV------------TAEDAQTYAQENG-LFFMETSAKTATNVKEIFYEIARRLP--
##### No 186 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQ--FPEVYVPTVFEN-YVADIEVD-----------GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV KHFC-------------PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK-TKDGVREVFEMATRAALQA >6IAN_E:AUTOPDB; Probability=99.7; Identities=15%; Resolution=3.2A; MatchedRegionTemplate=5-197; Intraflagellar transport protein 22; Intraflagellar transport protein 22, IFT74; HET: GTP, MSE; {Trypanosoma brucei brucei (strain 927/4 GUTat10.1)} -----DDLVKILVLGPSKSGKSTVTNFLAGTRDTPTKEYHETNPLRVLEVEIALDDTRRSGRQAAGLKKAVVQLWDVGGSSKHQAGWPAIASNADGIIYVFNPEVKGSEKELL-LWYKNF ALNQDELDDDNNFKMRVTDGHSLIFSHHSSLPEFAVGDNAIPP-----------MPPKQLQ-GIRALETSLDYQSDNFKEAFDALVEQIIA-
##### No 187 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYD-RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIIL VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT---KDGVREVFEMATRAALQA >2G77_B:AUTOPDB; Probability=99.7; Identities=25%; Resolution=2.26A; MatchedRegionTemplate=54-226; GTPase-activating protein GYP1, Ras-related protein; Protein transport, Gyp1 TBC domain; HET: MSE, GDP; {Saccharomyces cerevisiae} ---ARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRIL VGNKCDLRSAIQVP------------TDLAQKFADTHS-MPLFETSAKNPNDNDHVEAIFMTLAHKLKS-
##### No 188 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVD-GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPI ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3E5H_A:AUTOPDB; Probability=99.7; Identities=27%; Resolution=1.499A; MatchedRegionTemplate=9-179; Crystal Structure of Rab28 GTPase; Rab GTPase, SIGNALING PROTEIN, Cell; HET: GOL, GNP; {Homo sapiens} ----HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLV ALVGNKIDLEHMRTIK------------PEKHLRFCQENG-FSSHFVSAKTGDSVFLCFQKVAAEILG-
##### No 189 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1ZD9_A:AUTOPDB; Probability=99.7; Identities=20%; Resolution=1.7A; MatchedRegionTemplate=34-200; ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking; HET: GDP; {Homo sapiens} ----SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR---KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLG NKRDLPGALDEKE-LIE--------KMNLSAIQD-REICCYSISCKEKDNIDITLQWLIQHSKS-
##### No 190 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6EKK_C:AUTOPDB; Probability=99.7; Identities=30%; Resolution=1.82A; MatchedRegionTemplate=4-169; DENN domain-containing protein 1A, Ras-related; DENND1A- DENN domain-containing protein 1A; HET: SO4, GDP, EDO; {Homo sapiens} ---DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVK-RWLHEINQNCDDVCRILVG NKNDDPERKVVE------------TEDAYKFAGQMG-IQLFETSAKENVNVEEMFNCITELVL--
##### No 191 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2KSQ_A:AUTOPDB; Probability=99.7; Identities=16%; Resolution=NMR; MatchedRegionTemplate=14-180; ADP-ribosylation factor 1; ARF, myristoylated, myristoyl, GTP, bicelle; HET: GTP, MYR, MTN; {Saccharomyces cerevisiae} ---FGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTI-PTIG---FNVECVQYCNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFA NKQDLPEAMSAAE-ITEK--------LGLHS-IRNRPWFIQATCATSGEGLYEGLEWLSNCLKN-
##### No 192 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=9-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1R8S_A:AUTOPDB; Probability=99.7; Identities=17%; Resolution=1.46A; MatchedRegionTemplate=18-179; ADP-ribosylation factor 1/Cytohesin 2; PROTEIN TRANSPORT/EXCHANGE FACTOR, PROTEIN TRANSPORT-EXCHANGE; HET: GDP; {Bos taurus} --------MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG---FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFA NKQDLPNAMNAAE-ITD--------KLGLHSLRH-RNWYIQATCATSGDGLYEGLDWLSNQLRN-
##### No 193 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV----------YVPTVFENYV-ADI-EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID------SPDSLENIPEKW TPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5YMX_A:AUTOPDB; Probability=99.7; Identities=26%; Resolution=1.35A; MatchedRegionTemplate=10-190; Mutual gliding-motility protein MglA (E.C.3.6.5.2); Small Ras-like GTPase, Cytosolic, Myxococcus; HET: GDP, IMD, MPD, EDO; {Myxococcus xanthus (strain DK 1622)} ----REINCKIVYYGPGLCGKTTNLQYIYNKTAAETKGKLISLSTETDRTLFFDFLPLSLGEIRGFKTRFHLYTVPGQVFYDASRKLILKGVDGVVFVADSQIERMEANMESLENLRI-N LAEQGYDLNKIPYVIQYNKRDLPNAVT--------------VEEMRKALNHRN-IPEYQAVAPTGVGVFDTLKAVAKLVLT-
##### No 194 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4ZI2_A:AUTOPDB; Probability=99.7; Identities=18%; Resolution=2.2A; MatchedRegionTemplate=16-180; Arl3 (E.C.3.6.5.2.), CCDC104/BARTL1; Complex, Arf-like GTPase, GTP-binding, BART-like; HET: GNP; {Mus musculus} ----PDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGF---NIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFA NKQDLLTAAPASEIAEG-----LNL----HT-IRDRVWQIQSCSALTGEGVQDGMNWVCKNVN--
##### No 195 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=9-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5DE3_A:AUTOPDB; Probability=99.7; Identities=19%; Resolution=1.417A; MatchedRegionTemplate=17-177; ARF-like GTPase; G-protein, ADP ribosylation factor like; HET: GNP; {Chlamydomonas reinhardtii} --------ARILVLGLDNAGKTTILKALSEEDITTITPT----QGFNIKSLSRDGFNLKIWDIGGQKSIRPYWRNYFDQTDALIYVIDSADSKRLSESEFELTELLQEEKMTGVPLLVFA NKQDLVGALAA-DEIASTLD--------LTSI-RDRPWQIQACSAKQGTGLKEGMEWMMKQVK--
##### No 196 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=8-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3Q7Q_A:AUTOPDB; Probability=99.7; Identities=25%; Resolution=2.3A; MatchedRegionTemplate=91-253; GTP-binding protein RAD; G-domain, G-protein, Cav2 beta, SIGNALING; HET: GNP; {Homo sapiens} -------VYKVLLLGAPGVGKSALARIFGGVEDGPEAEA-AGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVG NKSDLVRSREVS------------VDEGRACAVVFD-CKFIETSAALHHNVQALFEGVVRQIRL-
##### No 197 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1KSH_A:AUTOPDB; Probability=99.7; Identities=15%; Resolution=1.8A; MatchedRegionTemplate=28-193; arf-like protein 2, RETINAL ROD; small GTPase, small GTP-binding protein; HET: GDP; {Mus musculus} ---QKERELRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLGFN---IKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFA NKQDLPGALSC-NAIQEALE--------LDSIRS-HHWRIQGCSAVTGEDLLPGIDWLLDDIS--
##### No 198 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLE--DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-------FCP NVPIILV-GNKKD-LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK--------DGVREVFEMATRAALQA >5U4U_A:AUTOPDB; Probability=99.7; Identities=16%; Resolution=1.9A; MatchedRegionTemplate=587-758; MGC81300 protein; GTPase, pseudoGTPase, G domain, Rho; HET: MLI; {Xenopus laevis} --DPNVDRINLVILGRDGLARE--LANEIRALCTN----------DDKYVIDGKMYELSLRPIEGNVRLPVNSFQTS-TFQPHGCLCLYN--SKESLSYVVESIEKSRESSLGRKENHLI NLPLTLILVNRRGDTSSETAH-----------SLIQHGQQVASKLQ-CVFLDAASTGLGYGRNINEKQISLILRGLLESKR--
##### No 199 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=57-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5HZH_A:AUTOPDB; Probability=99.7; Identities=59%; Resolution=2.6A; MatchedRegionTemplate=206-332; Rac1 containing C450A mutant LOV2; Signaling protein, Photoswitch, Chimera; HET: FMN, GTP; {Homo sapiens} --------------------------------------------------------NLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC-
##### No 200 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIE----------VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF -CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3BC1_E:AUTOPDB; Probability=99.7; Identities=28%; Resolution=1.8A; MatchedRegionTemplate=11-187; Ras-related protein Rab-27A (E.C.3.6.5.2), Synaptotagmin-like; Rab27, GTPase, Rab, signaling protein; HET: GNP; {Mus musculus} ----YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA YSENPDIVLCGNKSDLEDQRAVK------------EEEARELAEKYG-IPYFETSAANGTNISHAIEMLLDLIM--
##### No 201 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3BH7_A:AUTOPDB; Probability=99.7; Identities=19%; Resolution=1.9A; MatchedRegionTemplate=18-179; ADP-ribosylation factor-like protein 3, Protein; Protein-Protein complex, GTPase Activating protein; HET: GDP; {Mus musculus} -----GSEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQG---FNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFA NKQDLLTAAPASEIAEG-LN----L-----HTIRDRVWQIQSCSALTGEGVQDGMNWVCKN----
##### No 202 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR-LRPLSYPDTDVILMCFSIDSPDS-LENIPEKWTPEVKHF---CPNVPI ILVGNKKDLRNDEHTRRELAKMKQEP--VKP----------------------EEGRDMANRIGAFGYMECSAKTKDG------VREVFEMATRAALQA >2FH5_B:AUTOPDB; Probability=99.7; Identities=14%; Resolution=2.45A; MatchedRegionTemplate=65-275; Signal recognition particle receptor alpha; Endomembrane targeting, GTPase, GAP, longin; HET: GTP; {Homo sapiens} ---RKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSL LIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI----
##### No 203 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVD-GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVP IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2HXS_A:AUTOPDB; Probability=99.7; Identities=28%; Resolution=1.1A; MatchedRegionTemplate=9-179; Ras-related protein Rab-28; GTPase, Ras, Rab, SIGNALING PROTEIN; HET: G3D; {Homo sapiens} ----HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLED-WYTVVKKVSEESETQPL VALVGNKIDLEHMRTIK------------PEKHLRFCQENG-FSSHFVSAKTGDSVFLCFQKVAAEILG-
##### No 204 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVD----------GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF -CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2F7S_A:AUTOPDB; Probability=99.7; Identities=28%; Resolution=2.7A; MatchedRegionTemplate=24-202; Ras-related protein Rab-27B; Rab27b, G-protein, Rab, Structural Genomics; HET: GDP; {Homo sapiens} --GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA YCENPDIVLIGNKADLPDQREVN------------ERQARELADKYG-IPYFETSAATGQNVEKAVETLLDLIM--
##### No 205 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=8-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3Q72_A:AUTOPDB; Probability=99.7; Identities=25%; Resolution=1.655A; MatchedRegionTemplate=91-253; GTP-binding protein RAD; G-domain, G-protein, Cav2 beta, SIGNALING; HET: GNP; {Homo sapiens} -------VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVG NKSDLVRSREVSV------------DEGRACAVVFD-CKFIETSAALHHNVQALFEGVVRQIRL-
##### No 206 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=8-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3Q7Q_B:AUTOPDB; Probability=99.7; Identities=25%; Resolution=2.3A; MatchedRegionTemplate=91-253; GTP-binding protein RAD; G-domain, G-protein, Cav2 beta, SIGNALING; HET: GNP; {Homo sapiens} -------VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVG NKSDLVRSREVSV------------DEGRACAVVFD-CKFIETSAALHHNVQALFEGVVRQIRL-
##### No 207 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5C1T_B:AUTOPDB; Probability=99.7; Identities=19%; Resolution=2.801A; MatchedRegionTemplate=240-400; Small GTPase EhRabX3; P-loop containing nucleotide triphosphate hydrolases; HET: GTP; {Entamoeba histolytica} -----DIKIRMLMVGDQNVGKTTFIRKFALQDPTGHDFMN---AITTRFEMEKIKYEIIMIDWGFYNKLLQTNPAISRTIEAILIVYDITNEESFQNIHRKYYPLINNKFSDVAGVIVGY KTDLEAQRKIT------------MGDALTLADWLG-YKYVEMSSKDTEDHSSIIKALAHSIR--
##### No 208 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1M2O_B:AUTOPDB; Probability=99.7; Identities=18%; Resolution=2.5A; MatchedRegionTemplate=43-212; protein transport protein SEC23/GTP-binding protein; zinc-finger, beta barrel, vWA domain; HET: GNP; {Saccharomyces cerevisiae} ----WNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPT-W---HPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILG NKIDAPNAVSE-AELRSALGL-LNTTGSQRIEGQ-RPVEVFMCSVVMRNGYLEAFQWLSQY----
##### No 209 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILV GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4V0K_B:AUTOPDB; Probability=99.7; Identities=19%; Resolution=1.438A; MatchedRegionTemplate=19-184; ARF-LIKE SMALL GTPASE; HYDROLASE; HET: GDP, CD; {CHLAMYDOMONAS REINHARDTII} ----ASKKVNVLVVGLDNSGKTTIIERLKPRPRQAAEVAPTVGF---TVDEVEKGPLTFTVFDMSGAGRYRTLWEQYYREADAVVFVVDSADKLRMVVARDEMEHMLKHSNMRKVPILYF ANKKDLPVAMPPVEIAQA---------LGLDDIKD-RPWQIVPSNGLTGEGVDKGIDWLAERL---
##### No 210 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1FZQ_A:AUTOPDB; Probability=99.7; Identities=19%; Resolution=1.7A; MatchedRegionTemplate=14-179; ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 3; Protein-GDP complex without magnesium, ARF; HET: GDP, SO4, MES; {Mus musculus} ----PDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFN---IKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFA NKQDLLTAAPASE-IAEG----LN-----LHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA-
##### No 211 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDG-KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVP IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4CYM_B:AUTOPDB; Probability=99.7; Identities=22%; Resolution=2.8A; MatchedRegionTemplate=49-220; RAS-RELATED PROTEIN RAB-32 (E.C.3.6.5.2), ANKYRIN; TRANSPORT PROTEIN, VARP, RAB-EFFECTOR, RAB; HET: GCP; {HOMO SAPIENS} ----REHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGLERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIP AVLLANKCDQNKDSSQ------------SPSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKIL--
##### No 212 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILV GNKKDLRNDEHTRRELAKMKQEP---VKPEEGRDMAN---------RIGAFGYMECSAKTKDGVREVFEMATRAALQA >6FUF_B:AUTOPDB; Probability=99.7; Identities=15%; Resolution=3.117A; MatchedRegionTemplate=45-237; Rhodopsin, Guanine nucleotide-binding protein G(o); GPCR Complex Rhodopsin, SIGNALING PROTEIN; HET: RET, NAG; {Bos taurus} ----AAKDVKLLLLGADNSGKSTIVKQMKIIHEDGFSGRTRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVDLSDYNRMHESLMDFDSICNNKFFIDTSIILF LNKKDLFGEKIKKSPLTICFPEYTGPNTYEDAAAYIQAQFESKNRSPNKEIYCHMTCATDTNNAQVIFDAVTDIIIA-
##### No 213 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYD-RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIIL VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT---KDGVREVFEMATRAALQA >1Z06_A:AUTOPDB; Probability=99.7; Identities=25%; Resolution=1.81A; MatchedRegionTemplate=47-219; Ras-related protein Rab-33B; Rab GTPase, Rab33b GTPase, vesicular; HET: GNP; {Mus musculus} ---SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRIL VGNKCDLRSAIQVPT------------DLAQKFADTHS-MPLFETSAKNPNDNDHVEAIFMTLAHKLKS-
##### No 214 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3CPH_A:AUTOPDB; Probability=99.7; Identities=27%; Resolution=2.9A; MatchedRegionTemplate=36-201; Rab GDP-dissociation inhibitor, Ras-related protein; Rab GTPase, prenylation, vesicular transport; HET: GDP; {Saccharomyces cerevisiae} ----YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVG NKSDMETRVVTA-------------DQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQE-
##### No 215 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=8-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1R4A_B:AUTOPDB; Probability=99.7; Identities=17%; Resolution=2.3A; MatchedRegionTemplate=17-178; ADP-ribosylation factor-like protein 1/Golgi autoantigen; Ras-like G Protein structure, Three-helix; HET: GNP; {Rattus norvegicus} -------EMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFN-V--ETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFA NKQDMEQAMTPSEMANAL-------G--L-PALKDRKWQIFKTSATKGTGLDEAMEWLVETLK--
##### No 216 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--------PN VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4BAS_A:AUTOPDB; Probability=99.7; Identities=16%; Resolution=2.0A; MatchedRegionTemplate=18-194; ADP-RIBOSYLATION FACTOR, PUTATIVE (SMALL GTPASE; HYDROLASE; HET: SO4, GNP; {TRYPANOSOMA BRUCEI TREU927} ---QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG--YNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGR VPFLFFANKMDAAGAKTAAELVE--------ILDLTTLMGD-HPFVIFASNGLKGTGVHEGFSWLQETASR-
##### No 217 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA--------------------------------------DIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3CLV_A:AUTOPDB; Probability=99.7; Identities=24%; Resolution=1.89A; MatchedRegionTemplate=2-204; Rab5 protein, putative; malaria, gtpase, Rab, structural genomics; HET: GDP; {Plasmodium falciparum} --MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATC AIVVFDISNSNTLDRAKTWVNQLKI--SSNYIIILVANKIDKNKFQVDIL-------------EVQKYAQDN-NLLFIQTSAKTGTNIKNIFYMLAEEIYK-
##### No 218 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4DKX_A:AUTOPDB; Probability=99.7; Identities=28%; Resolution=1.9A; MatchedRegionTemplate=21-187; Ras-related protein Rab-6A; GTP binding fold, Membrane trafficking; HET: GDP; {Homo sapiens} ---NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVG NKTDLADKRQVS------------IEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAALP--
##### No 219 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=9-179 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2QTV_B:AUTOPDB; Probability=99.7; Identities=19%; Resolution=2.5A; MatchedRegionTemplate=24-188; Protein transport protein SEC23, Small; COPII coat, vesicular transport, Cytoplasmic; HET: GNP; {Saccharomyces cerevisiae} --------GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTW--HPTSE--ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILG NKIDAPNAVSEA-ELRSALGLL-NTTGSQRIEGQ-RPVEVFMCSVVMRNGYLEAFQWLSQ-----
##### No 220 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=9-179 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6GNI_B:AUTOPDB; Probability=99.7; Identities=18%; Resolution=4.9A; MatchedRegionTemplate=24-188; Protein transport protein SEC23, Protein; COPII coat, membrane trafficking, protein; HET: GNP; {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)} --------GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTW--HPTSE--ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILG NKIDAPNAVSEAELRSALGL-L-NTTGSQRIEGQ-RPVEVFMCSVVMRNGYLEAFQWLSQ-----
##### No 221 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1UPT_E:AUTOPDB; Probability=99.6; Identities=18%; Resolution=1.7A; MatchedRegionTemplate=15-180; ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 1, GOLGI; HYDROLASE/PROTEIN-BINDING, COMPLEX (GTPASE-GOLGIN), GOLGIN-245, GRIP; HET: GTP, MSE; {HOMO SAPIENS} ---HMTREMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFN-VE--TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFA NKQDMEQAMTSSEMANS---------LGLPAL-KDRKWQIFKTSATKGTGLDEAMEWLVETLK--
##### No 222 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYD-RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIIL VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT---KDGVREVFEMATRAALQA >6SUR_E:AUTOPDB; Probability=99.6; Identities=26%; Resolution=3.467A; MatchedRegionTemplate=32-202; Ras-related protein Rab-33B, Autophagy-related protein; Autophagy, cell cycle; HET: GTP; {Mus musculus} -----SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGLERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRIL VGNKCDLRSAIQVP------------TDLAQKFADTH-SMPLFETSAKNPNDNDHVEAIFMTLAHKLKS-
##### No 223 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6A8D_A:AUTOPDB; Probability=99.6; Identities=19%; Resolution=2.34A; MatchedRegionTemplate=18-183; Gamma glutamyl transpeptidase (E.C.2.3.2.2); Chlamydomonas reinhardtii, ARF, ADP-ribosylation factor; HET: GDP; {Chlamydomonas reinhardtii} ----GNREMRVVMLGLDAAGKTTILYKLHIGEVLTT-VPTIGFN-V--EKVQYKNVVFTVWDVGGQEKLRPLWRHYFNNTDGLIFVVDSQDRDRIGKAAQEFQAILQDPLMLHSAILVFA NKQDMKGCLTPAE-VC--------TALGLSDMRTR-KWHVQSSVATRGEGLYEGLDWLATTLKN-
##### No 224 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHT--RRELAKMKQEPVK----------------PEEGRDM-----A---N----RIGAFGYMECSAKTKDGVREVFEMATRAALQA >5G53_C:AUTOPDB; Probability=99.6; Identities=12%; Resolution=3.4A; MatchedRegionTemplate=52-259; ADENOSINE RECEPTOR A2A, ENGINEERED DOMAIN; SIGNALING PROTEIN, G PROTEIN COUPLED; HET: GDP, NEC, SOG; {HOMO SAPIENS} ----YRATHRLLLLGADNSGKSTIVKQMRIYHGGSGGSGGTSGIFET--KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVDSSDYNRLQEALNDFKSIWNNRWLRTISVILFL NKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENARRIFNDCRDIIQR-
##### No 225 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2H18_A:AUTOPDB; Probability=99.6; Identities=20%; Resolution=1.902A; MatchedRegionTemplate=30-194; ADP-ribosylation factor-like protein 8A; GDP, GTPASE, MEMBRANE TRAFFICKING, Structural; HET: GDP; {Homo sapiens} ----WKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM---RKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLG NKRDLPGALDEKELIEK---------MNLSAIQD-REICCYSISCKEKDNIDITLQWLIQHS---
##### No 226 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV--ADIEVDGKQVELALWDTAGLE----DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----- --------------CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6VIK_B:AUTOPDB; Probability=99.6; Identities=17%; Resolution=1.7A; MatchedRegionTemplate=31-229; Rab-like protein 3; Immune system, small GTPase; HET: GSP; {Mus musculus} ---ASLDRVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVHDYKEGTPEEKTYYIELWDVGGSVGSASSVKSTRAVFYNSVNGIILVHDLTNKKSSQNLYRWSLEVLNRDAVPTG VLVTNGDYDREQFADNQIPLLVIGTKLDQIHETKRHEVLIRT-AFL--AEDF-NAEEINLDCTNPRSSAAGSSNAVKLSRFFDKVI---
##### No 227 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4P0T_B:AUTOPDB; Probability=99.6; Identities=13%; Resolution=1.493A; MatchedRegionTemplate=31-170; CENP-M; Mitosis, Kinetochore, CCAN, G-protein, cell; {Homo sapiens} ----GLNTATILLVGTEDALLQQLADSMLKED-------------------CASELKVHLAKSLPLPSSV-----NRPRIDLIVFVVNLHSKYSLQNTEESLRHVDASF-FLGKVCFLAT GAGRESHCSI------------HRHTVVKLAHTYQ-SPLLYCDLEVEGFRATMAQRLVRVLQ--
##### No 228 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4WAU_B:AUTOPDB; Probability=99.6; Identities=13%; Resolution=2.2A; MatchedRegionTemplate=31-170; Centromere protein M; native-SAD, S-SAD, sulfur-SAD, sulfur SAD; {Homo sapiens} ----GLNTATILLVGTEDALLQQLADSMLKED-------------------CASELKVHLAKSLPLPSSV-----NRPRIDLIVFVVNLHSKYSLQNTEESLRHVDASF-FLGKVCFLAT GAGRESHCSI------------HRHTVVKLAHTYQ-SPLLYCDLEVEGFRATMAQRLVRVLQ--
##### No 229 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6FAE_B:AUTOPDB; Probability=99.6; Identities=17%; Resolution=2.35A; MatchedRegionTemplate=57-222; IQ motif and SEC7 domain-containing; GTPase GEF, HYDROLASE; HET: EDO; {Homo sapiens} ----YFQSMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFA NKQDLPNAMNAAEITD---------KLGLHSLRHR-NWYIQATCATSGDGLYEGLDWLSNQLRN-
##### No 230 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4WAU_A:AUTOPDB; Probability=99.6; Identities=13%; Resolution=2.2A; MatchedRegionTemplate=31-170; Centromere protein M; native-SAD, S-SAD, sulfur-SAD, sulfur SAD; {Homo sapiens} ----GLNTATILLVGTEDALLQQLADSMLKED-------------------CASELKVHLAKSLPLPSSV-----NRPRIDLIVFVVNLHSKYSLQNTEESLRHVDASF-FLGKVCFLAT GAGRESHCSI------------HRHTVVKLAHTYQ-SPLLYCDLEVEGFRATMAQRLVRVLQ--
##### No 231 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE---NYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYMECSAKTKDGVREVFEMATRAALQA >5KSP_B:AUTOPDB; Probability=99.6; Identities=16%; Resolution=2.162A; MatchedRegionTemplate=421-584; Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GDP; {Homo sapiens} ----QRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESEFLT----EAEIICDVVCLVYDVSNPKSFEYCARIFKQHFMD--SRIPCLI VAAKSDLHEVKQEY------------SISPTDFCRKHKMPPPQAFTCNTADAPSKDIFVKLTTMAM--
##### No 232 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHT--RRELAKMKQEPVK----------------PEEGR-----DMAN-------RIGAFGYMECSAKTKDGVREVFEMATRAALQA >6LI3_A:AUTOPDB; Probability=99.6; Identities=13%; Resolution=3.32A; MatchedRegionTemplate=41-246; G-protein coupled receptor 52, Guanine; G-protein coupled receptor, orphan GPCR; {Homo sapiens} -----RATHRLLLLGADNSGKSTIVKQMRILHGGSGGSGGTSGIFETK--FQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVDSSDYNRLQEALNLFKSIWNNRWLRTISVILFL NKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENARRIFNDCRDIIQ--
##### No 233 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILV GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1X3S_A:AUTOPDB; Probability=99.6; Identities=30%; Resolution=1.32A; MatchedRegionTemplate=13-179; Ras-related protein Rab-18; GTPase, Rab, GNP, Structural Genomics; HET: GNP; {Homo sapiens} ----VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV GNKIDKENREVDR-------------NEGLKFARKH-SMLFIEASAKTCDGVQCAFEELVEKIIQ-
##### No 234 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY-VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPII LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2H57_B:AUTOPDB; Probability=99.6; Identities=14%; Resolution=2.0A; MatchedRegionTemplate=32-202; Crystal structure of human ADP-ribosylation; GTP, GTPASE, MEMBRANE TRAFFICKING, STRUCTURAL; HET: GTP; {Homo sapiens} ---RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS-I--EKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPIL FFANKMDLRDAVTSVKVSQL-L--------CLENIK-DKPWHICASDAIKGEGLQEGVDWLQDQIQT-
##### No 235 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHT--RRELAKMKQEPVK----------------PEEGRDM-----A-------NRIGAFGYMECSAKTKDGVREVFEMATRAALQA >7D7M_D:AUTOPDB; Probability=99.6; Identities=13%; Resolution=3.3A; MatchedRegionTemplate=44-250; Prostaglandin E2 receptor EP4 subtype,Prostaglandin; prostaglandin E receptor, EP4, GPCR; HET: P2E; {Homo sapiens} ----YRATHRLLLLGADNSGKSTIVKQMRIYHGGSGGSGGTSGIFE--TKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVDSSDYNRLQEALNLFKSIWNNRWLRTISVILFL NKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENARRIFNDCRDIIQ--
##### No 236 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEP---VKPEEGRDMANR---------IGAFGYMECSAKTKDGVREVFEMATRAALQA >6G79_A:AUTOPDB; Probability=99.6; Identities=15%; Resolution=3.78A; MatchedRegionTemplate=31-220; Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit; G-protein coupled receptor, 5-HT1B, Mini-Go; HET: EP5; {Homo sapiens} ----AAKDVKLLLLGADNSGKSTIVKQMKIIHGGSGGSGGTTG--IVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVDLSDYNRMHESLMLFDSICNNKFFIDTSIILFL NKKDLFGEKIKKSPLTICFPEYTGPNTYEDAAAYIQAQFESKNRSPNKEIYCHMTCATDTNNAQVIFDAVTDIIIA-
##### No 237 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVD-GKQVELALWDTAGLEDYDRLR---PLSYPDTDVILMCFSIDSP--DSLENIPEKWTPEVKHFCPNVP IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR---IGAFGYMECSAKTKDGVREVFEMATRAALQA >6S6D_C:AUTOPDB; Probability=99.6; Identities=14%; Resolution=2.5A; MatchedRegionTemplate=116-295; Ras-related GTP-binding protein A, Ras-related; small GTPases, mTORC1 activator, roadblock; HET: GTP, GDP, 9JE; {Homo sapiens} ----DSSKPRILLMGLRRSGKNSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSK-AYKVNPDMN FEVFIHKVDGLSDDHKIETQRDIHQ-----RANDDLADAGLEKLHLSFYLTSIY-DHSIFEAFSKVVQKLI--
##### No 238 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEV-DGKQVELALWDTAGLEDYDRLR---PLSYPDTDVILMCFSIDSP--DSLENIPEKWTPEVKHFCPNV PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR---IGAFGYMECSAKTKDGVREVFEMATRAALQA >6S6A_C:AUTOPDB; Probability=99.6; Identities=14%; Resolution=2.63A; MatchedRegionTemplate=117-296; Ras-related GTP-binding protein A, Ras-related; small GTPases, mTORC1 activator, roadblock; HET: 9JE, GTP, GDP; {Homo sapiens} ----DSSKPRILLMGLRRSGKSSIQKVVFHKMSP-NENLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSK-AYKVNPDM NFEVFIHKVDGLSDDHKIETQRDIHQ-----RANDDLADAGLEKLHLSFYLTSIY-DHSIFEAFSKVVQKLI--
##### No 239 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEV--DGKQVELALWDTAGLEDYDRLRPLSYP----DTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--- -----------------------------------------------------------PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR EVFEMATRAALQA >6F1Y_j:AUTOPDB; Probability=99.6; Identities=13%; Resolution=3.4A; MatchedRegionTemplate=52-292; Cytoplasmic dynein 1 heavy chain; Cryo-EM, Complex, MOTOR PROTEIN; {Homo sapiens} -----PSGKNILVFGEDGSGKTTLMTKLQGAEHGKK---GRGLEYLYLSVHDEDRDDHTRCNVWILDGDLYHKGLLKFAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKM KIPPEKMRELERKFVKDFQDYMEPEEGCQGSPQRRGPLTSGSDEENVALPLGDNVLTHNLGIPVLVVCTKCDAVSVLEKEHDYRDEH-LDFIQSHLRRFCLQYG-AALIYTSVKEEKNLD LLYKYIVHKTY--
##### No 240 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIE-----VDGKQVELALWDTAGLE----DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF- ------------------CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI------GAFGYMECSAKTKDGVREVFEMATRAALQA >6VIJ_A:AUTOPDB; Probability=99.6; Identities=17%; Resolution=1.95A; MatchedRegionTemplate=37-238; Rab-like protein 3; Immune system, small GTPase; HET: GDP; {Mus musculus} ----SLDRVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVDIRVHDYKEGTPEEKTYYIELWDVGGSVGSASSVKSTRAVFYNSVNGIILVHDLTNKKSSQNLYRWSLEVLNRDA VPTGVLVTNGDYDREQFADNQIPLLVIGTKLDQIHETKRHEVLI----------RTAFLAEDFNAEEINLDCTNPRSSAAGSSNAVKLSRFFDKVI---
##### No 241 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIE-----VDGKQVELALWDTAGLE----DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF- ------------------CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI------GAFGYMECSAKTKDGVREVFEMATRAALQA >6VIJ_B:AUTOPDB; Probability=99.6; Identities=17%; Resolution=1.95A; MatchedRegionTemplate=33-234; Rab-like protein 3; Immune system, small GTPase; HET: GDP; {Mus musculus} ----SLDRVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVDIRVHDYKEGTPEEKTYYIELWDVGGSVGSASSVKSTRAVFYNSVNGIILVHDLTNKKSSQNLYRWSLEVLNRDA VPTGVLVTNGDYDREQFADNQIPLLVIGTKLDQIHETKRHEVLI----------RTAFLAEDFNAEEINLDCTNPRSSAAGSSNAVKLSRFFDKVI---
##### No 242 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--------RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2GJ8_B:AUTOPDB; Probability=99.6; Identities=21%; Resolution=1.7A; MatchedRegionTemplate=219-382; tRNA modification GTPase trmE; G-domain dimer, alpha-beta-sandwich, Hydrolase; HET: MSE, ALF, GDP; {Escherichia coli BL21(DE3)} -----SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA-EIWPEFIARLPAK LPITVVRNKADITGETLG-------------------MSEV-NGHALIRLSARTGEGVDVLRNHLKQSMG--
##### No 243 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--------RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2GJ8_D:AUTOPDB; Probability=99.6; Identities=21%; Resolution=1.7A; MatchedRegionTemplate=214-377; tRNA modification GTPase trmE; G-domain dimer, alpha-beta-sandwich, Hydrolase; HET: ALF, MSE, GDP; {Escherichia coli BL21(DE3)} -----SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA-EIWPEFIARLPAK LPITVVRNKADITGETLG-------------------MSEV-NGHALIRLSARTGEGVDVLRNHLKQSMG--
##### No 244 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--------RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2GJA_B:AUTOPDB; Probability=99.6; Identities=21%; Resolution=1.85A; MatchedRegionTemplate=216-379; tRNA modification GTPase trmE; G-domain dimer, alpha-beta-sandwich, HYDROLASE; HET: ALF, GDP; {Escherichia coli BL21(DE3)} -----SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA-EIWPEFIARLPAK LPITVVRNKADITGETLG-------------------MSEV-NGHALIRLSARTGEGVDVLRNHLKQSMG--
##### No 245 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3O47_B:AUTOPDB; Probability=99.6; Identities=16%; Resolution=2.8A; MatchedRegionTemplate=163-327; ADP-ribosylation factor GTPase-activating protein 1; structural genomics consortium, GTPase activation; HET: GDP; {Homo sapiens} -----KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGF---NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFA NKQDLPNAMNAAE-ITD--------KLGLHSLRHR-NWYIQATCATSGDGLYEGLDWLSNQLRN-
##### No 246 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-----------F CPNVPIILVGNKKDLRNDEHTRRELAKMKQEP---VKPEEGRDMAN---------RIGAFGYMECSAKTKDGVREVFEMATRAALQA >6WWZ_A:AUTOPDB; Probability=99.6; Identities=16%; Resolution=3.34A; MatchedRegionTemplate=47-245; Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit; GPCR, Chemokine, Chemokine receptor, Complex; {Rattus norvegicus} -----AKDVKLLLLGADNSGKSTIVKQMKIIHGGSGGSGGTTGIVE--THFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVDLSDYDQVLHEDETTNRMHESLMDFDSICNNKF FIDTSIILFLNKKDLFGEKIKKSPLTICFPEYTGPNTYEDAAAYIQAQFESKNRSPNKEIYCHMTCATDTNNAQVIFDAVTDIIIA-
##### No 247 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4WNR_A:AUTOPDB; Probability=99.6; Identities=19%; Resolution=2.9A; MatchedRegionTemplate=344-503; Mb Roco2 RocCORdC 287-629 (E.C.3.6.5.2.); Roco proteins, GAD, small G-protein; HET: SO4, GDP; {Methanosarcina barkeri} ----PLNEVKVLLVGDGEAGKTSLLKRLLGEGFDGNEHQTQGINIKKWGFKDKDKEIKVNFWDFGGQEIMHATHQFFLSKRSLYILVLDSRRDEKA----EYWLKHIRSFGGDSPVLVAL NKIDENPSFELNR---K---------FLQEK--YPSIKGFFRISCKEDRGIEGFSQKLKKEL---
##### No 248 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=8-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLSY--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3TAH_A:AUTOPDB; Probability=99.6; Identities=17%; Resolution=1.85A; MatchedRegionTemplate=2-160; Ferrous iron uptake transporter protein; G-protein, GTPase, Iron transport, Potassium; HET: BGO, GOL; {Streptococcus thermophilus} -------MTEIALIGNPASGKTSLFNLITGHNQRVGNWPGVTVERK-SGLVK-KNKDLEIQDLPGIYSMSPYSPEEKVARDYLLSQRADSILNVVDATNLERNLY----LTTQLI--ETG IPVTIALNMIDVLDGQGKKINV-------------DKLSYHL-GVPVVATSALKQTGVDQVVKKAAHT----
##### No 249 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPT-VFENYVADIEVDGKQVELALWDTAGLEDY-DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPII LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2HT6_A:AUTOPDB; Probability=99.6; Identities=25%; Resolution=2.4A; MatchedRegionTemplate=74-243; GTP-binding protein GEM; small G-protein, signaling protein; HET: GDP; {Homo sapiens} ----GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII LVGNKSDLVRCREVS------------VSEGRACAVVF-DCKFIETSAAVQHNVKELFEGIVRQVRL-
##### No 250 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLSY--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3B1V_A:AUTOPDB; Probability=99.6; Identities=16%; Resolution=1.85A; MatchedRegionTemplate=2-162; Ferrous iron uptake transporter protein; G protein, iron transport, GTPase; HET: GGM; {Streptococcus thermophilus} ------SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERK-SGLV-KKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERNLYL----TTQLIE--TG IPVTIALNMIDVLDGQGKKINV-------------DKLSYHL-GVPVVATSALKQTGVDQVVKKAAHTT---
##### No 251 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN---YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYMECSAKTKDGVREVFEMATRAALQA >5KTY_A:AUTOPDB; Probability=99.6; Identities=16%; Resolution=2.522A; MatchedRegionTemplate=419-583; Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GDP; {Homo sapiens} ----QRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESEFLTE----AEIICDVVCLVYDVSNPKSFEYCARIFKQHFMD--SRIPCLI VAAKSDLHEVKQE------------YSISPTDFCRKHKMPPPQAFTCNTADAPSKDIFVKLTTMAMY-
##### No 252 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRD---MANRIGAFGYMECSAKTKD------GVREVFEMATRAALQA >6VS4_A:AUTOPDB; Probability=99.6; Identities=13%; Resolution=2.4A; MatchedRegionTemplate=35-215; Small COPII coat GTPase SAR1; SSGCID, COPII coat GTPase SAR1; HET: PEG, GDP; {Encephalitozoon cuniculi (strain GB-M1)} -----GKPSSILFLGIDNAGKTTLVNKLKSDSTDVY-MPTHH-PSTSY--IEIGNLKAQVIDLGGHTAARLAWRDYFYDCHGIVFIVDVHDVERFQEVREAYETVLSL-EKRAPVVVLMN KIDLEGHTPETAEADYQWKSWLSQETGIENQEDPERGQVVKIFYVTITSGSANSITGPLARAFKWLEAMIT--
##### No 253 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLSY--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2WJI_A:AUTOPDB; Probability=99.6; Identities=14%; Resolution=1.903A; MatchedRegionTemplate=2-164; FERROUS IRON TRANSPORT PROTEIN B; MEMBRANE G-PROTEINS, FERROUS IRON TRANSPORT; HET: GNP; {METHANOCALDOCOCCUS JANNASCHII} ------KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKK-EGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLY----LTLQLME--MG ANLLLALNKMDLAKSLGIEID-------------VDKLEKILG-VKVVPLSAAKKMGIEELKKAISIAVK--
##### No 254 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2LKD_A:AUTOPDB; Probability=99.6; Identities=22%; Resolution=NMR; MatchedRegionTemplate=3-169; Translation initiation factor IF-2; TRANSLATION; HET: GDP; {Geobacillus stearothermophilus} --HMVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHI-GAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTV-EAINH-AK--AANVPIIVAIN KMDKPEANPDR-VMQELME----YNLVPE--EWGGDTIFCKLSAKTKEGLDHLLEMILLVS---
##### No 255 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4C0L_A:AUTOPDB; Probability=99.6; Identities=19%; Resolution=3.0A; MatchedRegionTemplate=448-611; MITOCHONDRIAL RHO GTPASE (E.C.3.6.5.-); HYDROLASE, MITOCHONDRIAL TRANSPORT, CALCIUM-BINDING GTPASE; HET: GDP, SO4; {DROSOPHILA MELANOGASTER} ----SRSVYKCHVIGPKGSGKTGMCRGFLVEDMHKLIGKEFKTNVVNCINSVQVYGQEKHLILRDIDVRHALDPLQP-QEVNCDVACLVYDSSNPRSFEYVARIYIKYYA--ESKIPVMI VGTKCDMDERRQD------------YLMQPSEFCDKYKLLPPHLFSLKT--NKKELYTKLATMAA--
##### No 256 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVD-GKQVELALWDTAGLEDYDRLR---PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH---FCPN VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR---IGAFGYMECSAKTKDGVREVFEMATRAALQA >2Q3F_A:AUTOPDB; Probability=99.6; Identities=13%; Resolution=2.1A; MatchedRegionTemplate=43-221; Ras-related GTP-binding protein D; Structural Genomics, GTP-binding, RRAGD, Structural; HET: MSE, GNP; {Homo sapiens} -----EVKPRILLMGLRRSGKSSIQKVVFH-KMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQIDFFDPTFDYEMIFRGTGALIFVIDSQDD-YMEAL-ARLHLTVTRAYKVNTD INFEVFIHKVDGLSDDHKIETQRD-----IHQRANDDLADAGLEKIHLSFYLTSIY-DHSIFEAFSKVVQKLI--
##### No 257 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV--YVP-TVFENYVADIEVDGKQVELALWDTAGLEDY----------DRLRPLSYPD---TDVILMCFSIDSPDSLENIPEKWTP EVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4DHE_A:AUTOPDB; Probability=99.6; Identities=13%; Resolution=2.2A; MatchedRegionTemplate=25-208; Probable GTP-binding protein EngB; melioidosis, RAS-like GTPase, cell division; {Burkholderia thailandensis} -----TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGP-AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIE WFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSL---DAYRD-AGYAGKLTVQLFSALKRTGLDDAHALIESWLR--
##### No 258 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLSYP--DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2WJJ_B:AUTOPDB; Probability=99.6; Identities=14%; Resolution=2.405A; MatchedRegionTemplate=1-165; FERROUS IRON TRANSPORT PROTEIN B; METAL TRANSPORT, MEMBRANE G-PROTEINS, FERROUS; HET: MSE, GDP; {METHANOCALDOCOCCUS JANNASCHII} -----MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEK-KEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLY----LTLQLME--MG ANLLLALNKMDLAKSLGIEI-------------DVDKLEKILG-VKVVPLSAAKKMGIEELKKAISIAVKD-
##### No 259 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPE---VYVPTVFENYVADIEVDGKQVELALWDTAGLEDY----------DRLRPLSYPD---TDVILMCFSIDSPDSLENIPEKWTP EVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4DHE_B:AUTOPDB; Probability=99.6; Identities=13%; Resolution=2.2A; MatchedRegionTemplate=25-208; Probable GTP-binding protein EngB; melioidosis, RAS-like GTPase, cell division; {Burkholderia thailandensis} -----TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGP-AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIE WFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSL---DAYRD-AGYAGKLTVQLFSALKRTGLDDAHALIESWLR--
##### No 260 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEV-DGKQVELALWDTAGLEDYDRLR---PLSYPDTDVILMCFSIDSP--DSLENIPEKWTPEVKHFCPNV PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR----IGAFGYMECSAKTKDGVREVFEMATRAALQA >3LLU_A:AUTOPDB; Probability=99.6; Identities=13%; Resolution=1.4A; MatchedRegionTemplate=77-255; Ras-related GTP-binding protein C; Structural Genomics Consortium, SGC, GTP-binding; HET: GNP; {Homo sapiens} ----QGSKPRILLMGLRRSGKSSIQKVVFH-KMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSK-AYKVNPDM NFEVFIHKVDGLSDDHKIETQRD-----IHQRANDDLADAGLEKLH-LSFYLTSIY-DHSIFEAFSKVVQKL---
##### No 261 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4C0K_A:AUTOPDB; Probability=99.6; Identities=19%; Resolution=2.801A; MatchedRegionTemplate=448-611; MITOCHONDRIAL RHO GTPASE (E.C.3.6.5.-); HYDROLASE, MITOCHONDRIAL TRANSPORT, CALCIUM-BINDING GTPASE; HET: SO4; {DROSOPHILA MELANOGASTER} ----SRSVYKCHVIGPKGSGKTGMCRGFLVEDMHKLIGKEFKTNVVNCINSVQVYGQEKHLILRDIDVRHALDPLQP-QEVNCDVACLVYDSSNPRSFEYVARIYIKYYA--ESKIPVMI VGTKCDMDERRQD------------YLMQPSEFCDKYKLLPPHLFSLKT--NKKELYTKLATMAA--
##### No 262 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF--EN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYMECSAKTKDGVREVFEMATRAALQA >5KSO_A:AUTOPDB; Probability=99.6; Identities=16%; Resolution=2.25A; MatchedRegionTemplate=418-582; Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GDP; {Homo sapiens} ---TQRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESEFLTE----AEIICDVVCLVYDVSNPKSFEYCARIFKQHFMD--SRIPCLI VAAKSDLHEVKQEY------------SISPTDFCRKHKMPPPQAFTCNTADAPSKDIFVKLTTMAM--
##### No 263 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLSY--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2WJG_A:AUTOPDB; Probability=99.6; Identities=14%; Resolution=2.2A; MatchedRegionTemplate=-2-164; FERROUS IRON TRANSPORT PROTEIN B; MEMBRANE G-PROTEINS, FERROUS IRON TRANSPORT; HET: GDP; {METHANOCALDOCOCCUS JANNASCHII} --GSHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVE-KKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYL----TLQLME--MG ANLLLALNKMDLAKSLGIEID-------------VDKLEKILG-VKVVPLSAAKKMGIEELKKAISIAVK--
##### No 264 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-N-Y-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYMECSAKTKDGVREVFEMATRAALQA >5KU1_A:AUTOPDB; Probability=99.6; Identities=16%; Resolution=2.501A; MatchedRegionTemplate=419-582; Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GDP; {Homo sapiens} ----QRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESEFLTE----AEIICDVVCLVYDVSNPKSFEYCARIFKQHFMD--SRIPCLI VAAKSDLHEVKQE------------YSISPTDFCRKHKMPPPQAFTCNTADAPSKDIFVKLTTMAM--
##### No 265 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=9-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLSY--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4NON_A:AUTOPDB; Probability=99.6; Identities=17%; Resolution=2.5A; MatchedRegionTemplate=2-160; Ferrous iron uptake transporter protein; G protein, iron transport, GTPase; HET: GDP; {Streptococcus thermophilus} --------TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER-KSGLVK-KNKDLEIQDLPGIYSMSPYSPEEKVARDYLLSQRADSILNVVDATNLERNLYL----TTQLIE--TG IPVTIALNMIDVLDGQGKKIN-------------VDKLSYHLG-VPVVATSSLKQTGVDQVVKKAAHTT---
##### No 266 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=8-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV--PTVFEN-YVADIEV---DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD-GVREVFEMATRAALQA >2ZEJ_B:AUTOPDB; Probability=99.6; Identities=21%; Resolution=2.0A; MatchedRegionTemplate=1337-1512; Leucine-rich repeat kinase 2 (E.C.2.7.11.1); Parkinson's Disease, LRRK2, ROC, GTPase; HET: GDP; {Homo sapiens} -------RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP VILVGTHLDVSDEKQRKACMSKITK------ELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESL--
##### No 267 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=8-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENY-VADIEV---DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD-GVREVFEMATRAALQA >2ZEJ_A:AUTOPDB; Probability=99.5; Identities=21%; Resolution=2.0A; MatchedRegionTemplate=1337-1511; Leucine-rich repeat kinase 2 (E.C.2.7.11.1); Parkinson's Disease, LRRK2, ROC, GTPase; HET: MSE, GDP; {Homo sapiens} -------RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP VILVGTHLDVSDEKQRKACMSKITK------ELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES---
##### No 268 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLSY--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2WJH_B:AUTOPDB; Probability=99.5; Identities=14%; Resolution=2.1A; MatchedRegionTemplate=2-165; FERROUS IRON TRANSPORT PROTEIN B; METAL TRANSPORT, MEMBRANE G-PROTEINS, FERROUS; HET: GDP, FLC; {METHANOCALDOCOCCUS JANNASCHII} ------KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKK-EGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLY----LTLQLME--MG ANLLLALNKMDLAKSLGIEID-------------VDKLEKILG-VKVVPLSAAKKMGIEELKKAISIAVKD-
##### No 269 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY---------DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1EGA_B:AUTOPDB; Probability=99.5; Identities=15%; Resolution=2.4A; MatchedRegionTemplate=6-176; GTP-BINDING PROTEIN ERA; ERA, GTPASE, RNA-BINDING, RAS-LIKE, HYDROLASE; HET: SO4; {Escherichia coli} --IDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPD--D-EMVLNKLRE--G KAPVILAVNKVDNVQEKADLLP------------HLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL---
##### No 270 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY---------DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3IEU_A:AUTOPDB; Probability=99.5; Identities=15%; Resolution=2.8A; MatchedRegionTemplate=6-176; GTP-binding protein era; ERA, GTPase, KH domain, GDP; HET: GDP, SO4; {Escherichia coli K-12} --IDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPD--D-EMVLNKLRE--G KAPVILAVNKVDNVQEKADLLP------------HLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL---
##### No 271 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3LVQ_E:AUTOPDB; Probability=99.5; Identities=20%; Resolution=3.38A; MatchedRegionTemplate=742-905; Arf-GAP with SH3 domain, ANK; Arf, GAP, GDP, ASAP3, UPLC1; HET: GDP; {Homo sapiens} -----NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFN-V--ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA NKQDLPDAMKPHE-IQ--------EKLGLTRIRDRN-WYVQPSCATSGDGLYEGLTWLTSNYK--
##### No 272 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT-VFENYVADIEVDGKQVELALWDTAGLEDY----------DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI-GAFGYMECSAKTKDGVREVFEMATRAALQA >3R9X_A:AUTOPDB; Probability=99.5; Identities=18%; Resolution=2.8A; MatchedRegionTemplate=3-178; GTPase Era, Ribosomal RNA small; GTPase, KH domain, ribosome, biogenesis; HET: MRD, GNP; {Aquifex aeolicus} --HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIK-- PLNKPVIVVINKIDKIGPAKNVLPLI------------DEIHKKHPELTEIVPISALKGANLDELVKTILKYL---
##### No 273 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-TVFENYVADIEVDGKQVELALWDTAGLEDY-------DRLRPLSYPDTDVILMCFSIDSPD---SLENIPEKWTPEVKHF C---PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIG-AFGYMECSAKTKDGVREVFEMATRAALQA >5M04_A:AUTOPDB; Probability=99.5; Identities=19%; Resolution=1.85A; MatchedRegionTemplate=175-350; GTPase ObgE/CgtA (E.C.3.6.5.-); GTPase, ObgE, CgtA, hydrolase; HET: GDP; {Escherichia coli DH5[alpha]} ------LLADVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRM-DNEKSFVVADIPGLIEGAAEGAGLGIRFLKHLERCRVLLHLIDIDPIDGTDPVENA-RIIISELEKY SQDLATKPRWLVFNKIDLLDKVEAEEKA-------------KAIAEALGWEDKYYLISAASGLGVKDLCWDVMTFII--
##### No 274 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=2-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL---RPLSYPDTDVILMCFSIDSP--DSLENIPEKWTPEVKHFCPN VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4ARZ_B:AUTOPDB; Probability=99.5; Identities=13%; Resolution=3.1A; MatchedRegionTemplate=7-187; GTP-BINDING PROTEIN GTR1, GTP-BINDING PROTEIN; HYDROLASE, GTPASE, CELL GROWTH; HET: GTP, GDP; {SACCHAROMYCES CEREVISIAE} -LEATDSKAMVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPS-L--EHF-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAM-IIEYAYKVNPS INIEVLIHKVDGLSEDFKVDAQRDIMQRT--GEELLELGLDGVQVSFYLTSIFDH-SIYEAFSRIVQKLI--
##### No 275 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE---NYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYMECSAKTKDGVREVFEMATRAALQA >5KSZ_A:AUTOPDB; Probability=99.5; Identities=16%; Resolution=2.5A; MatchedRegionTemplate=420-584; Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GCP; {Homo sapiens} ----QRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESEFLTE----AEIICDVVCLVYDVSNPKSFEYCARIFKQHFMD--SRIPCLI VAAKSDLHEVKQE------------YSISPTDFCRKHKMPPPQAFTCNTADAPSKDIFVKLTTMAMY-
##### No 276 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=80-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSP--DSLENIPEKWTPEVKHF-CPNVPIIL VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3C5H_A:AUTOPDB; Probability=99.5; Identities=16%; Resolution=1.8A; MatchedRegionTemplate=167-258; Glucocorticoid receptor DNA-binding factor 1; ras, gtpase, glucorticoid receptor, Structural; HET: GNP; {Homo sapiens} -------------------------------------------------------------------------------VDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVV VLTKCDEGVERYIR--------------DAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID--
##### No 277 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY-VP-TVFENYVADIEVDGKQVELALWDTAGLEDYD-RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPII LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2CJW_B:AUTOPDB; Probability=99.5; Identities=25%; Resolution=2.1A; MatchedRegionTemplate=72-241; GTP-BINDING PROTEIN GEM; G-PROTEIN, NUCLEOTIDE-BINDING, GTP-BINDING, SMALL GTPASE; HET: GDP, CAS; {HOMO SAPIENS} ----GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII LVGNKSDLVRCREVS------------VSEGRACAVVF-DCKFIETSAAVQHNVKELFEGIVRQVRL-
##### No 278 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=8-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLE--------DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5X4B_A:AUTOPDB; Probability=99.5; Identities=15%; Resolution=1.5A; MatchedRegionTemplate=3-162; GTPase Der; Ribosome biogenesis, Rossmann fold, GTPase; HET: GDP; {Bacillus subtilis (strain 168)} -------KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGRE--GVTAADEEVAKILYR--TK KPVVLAVNKLDNTEMRAN----------------IYDFYSL-GFGEPYPISGTHGLGLGDLLDAVAEH----
##### No 279 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-127 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV--YVPTVFENYV-ADIEVD---GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDS-PDSLENIPEKWTPEVKHFCPNV PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6VP6_B:AUTOPDB; Probability=99.5; Identities=25%; Resolution=3.47A; MatchedRegionTemplate=1672-1802; Leucine-rich repeat serine/threonine-protein kinase 2; Kinase, GTPase, SIGNALING PROTEIN; HET: GDP, TPO; {Homo sapiens} --AVPYNRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAM-KPWLFNIKARASSS PVILVGTHLDVSDE---------------------------------------------------------
##### No 280 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLE----------DYDRLRPLSY---PDTDVILMCFSIDSPDSLENIPEKWTPEVK HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1SUL_B:AUTOPDB; Probability=99.5; Identities=12%; Resolution=2.0A; MatchedRegionTemplate=20-193; Probable GTP-binding protein YsxC; GTP, GTPase, GTP-binding, HYDROLASE; {Bacillus subtilis} ----EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--IINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLK Y--YGIPVIVIATKADKIPKGKWDKHAKVV---------RQTL-NIDPEDELILFSSETKKGKDEAWGAIKKMI---
##### No 281 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLE----------DYDRLRPLSY---PDTDVILMCFSIDSPDSLENIPEKWTPEVK HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1SVI_A:AUTOPDB; Probability=99.5; Identities=12%; Resolution=1.95A; MatchedRegionTemplate=20-193; GTP-binding protein YsxC; YsxC, ENGB, GTPase, GTP-binding protein; HET: GDP; {Bacillus subtilis} ----EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--IINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLK Y--YGIPVIVIATKADKIPKGKWDKHAKVV---------RQTL-NIDPEDELILFSSETKKGKDEAWGAIKKMI---
##### No 282 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRP-----------LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3J8G_X:AUTOPDB; Probability=99.5; Identities=20%; Resolution=5.0A; MatchedRegionTemplate=199-372; PROTEIN/RNA Complex; Ribosome assembly, EngA, Der, YphC; {Escherichia coli K12} ----QSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDL-SLLGFILN-- -SGRSLVIVVNKWDGLSQEVKEQ-VKETL---------DFRLGFIDFARVHFISALHGSGVGNLFESVREAY---
##### No 283 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLR-----------PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5DN8_A:AUTOPDB; Probability=99.5; Identities=17%; Resolution=1.76A; MatchedRegionTemplate=174-347; GTPase Der; GTP-binding protein, GDP, Complex, Structural; HET: GDP; {Coxiella burnetii (strain RSA 493 / Nine Mile phase I)} ----KEVGIKIAMIGRPNVGKSTLINRLLGEERVIVYDQPGTTRDSIYIPFARNDENYTLIDTAGIRRRAKIQDYVEKFSMIKSLQAMHAADVVIFLLDARQGVTEQDL-RLLNRIVE-- -AGVSLIIAVNKWDGLNIEERDNVRN----------AIDRRMPFVDFARRYFISALHGTGVGKLFRAIQESY---
##### No 284 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=9-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGLED-------YDRLRPLSYPDTDVILMCFSIDSPDSLENIP--EKWTPEVKHF- --CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1LNZ_A:AUTOPDB; Probability=99.5; Identities=19%; Resolution=2.6A; MatchedRegionTemplate=160-330; SPO0B-associated GTP-binding protein; GTPase, Obg, stringent factor, stress; HET: G4P; {Bacillus subtilis} --------ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVET-DDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYN LRLTERPQIIVANKMDMPEAAENLEAF------------KEKL-T--DDYPVFPISAVTREGLRELLFEVANQLE--
##### No 285 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDY-------DRLRPLSYPDTDVILMCFSIDSPD---SLENIPEKWTPEVKHF CP---NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIG-AFGYMECSAKTKDGVREVFEMATRAALQA >4CSU_9:AUTOPDB; Probability=99.5; Identities=19%; Resolution=5.5A; MatchedRegionTemplate=161-336; 50S RIBOSOMAL PROTEIN L28, 50S; (P)PPGPP, OBG, RIBOSOME ASSEMBLY, STRINGENT; {ESCHERICHIA COLI} ------LLADVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRM-DNEKSFVVADIPGLIEGAAEGAGLGIRFLKHLERCRVLLHLIDIDPIDGTDPVENA-RIIISELEKY SQDLATKPRWLVFNKIDLLDKVEAEEKAK-------------AIAEALGWEDKYYLISAASGLGVKDLCWDVMTFII--
##### No 286 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-164 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGL--EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--------C PNVPIILV-GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5U4V_A:AUTOPDB; Probability=99.5; Identities=20%; Resolution=2.6A; MatchedRegionTemplate=596-740; Rho GTPase-activating protein 5; GTPase, pseudoGTPase, G domain, Rho; {Homo sapiens} --STNIDKVNLFILGKDGLAQE-LANEI-RTQSTD-----------DEYALDGKIYELDLRPVDAKSPYFLSQLWTAA-FKPHGCFCVFN--SIESLSFIGEFIGKIRTEASQIRKDKYM ANLPFTLILANQRDSISKNLP-----------ILRHQGQQLANKLQ-CPFVDVPA--------------------
##### No 287 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENY-VADIEV---DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI---GAFGYMECSAKTKD-GVREVFEMATRAALQA >6OJF_A:AUTOPDB; Probability=99.5; Identities=21%; Resolution=1.6A; MatchedRegionTemplate=1347-1525; Leucine-rich repeat serine/threonine-protein kinase 2; Parkinson's disease, LRRK2, GTPase, Dimer; HET: GDP; {Homo sapiens} ---VPYNRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP VILVGTHLDVSDEAQRAACMSKI---------TKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES---
##### No 288 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENY-VADIEV---DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI---GAFGYMECSAKTKD-GVREVFEMATRAALQA >6OJF_B:AUTOPDB; Probability=99.5; Identities=21%; Resolution=1.6A; MatchedRegionTemplate=1347-1525; Leucine-rich repeat serine/threonine-protein kinase 2; Parkinson's disease, LRRK2, GTPase, Dimer; HET: GDP; {Homo sapiens} ---VPYNRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP VILVGTHLDVSDEAQRAACMSKI---------TKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES---
##### No 289 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-TVFENYVADIEVDGKQVELALWDTAGLEDY----------DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI-GAFGYMECSAKTKDGVREVFEMATRAALQA >3IEV_A:AUTOPDB; Probability=99.5; Identities=18%; Resolution=1.9A; MatchedRegionTemplate=7-179; GTP-binding protein era/RNA complex; ERA, GTPase, KH domain, anti-SD; HET: GNP; {Aquifex aeolicus} -----MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIK-- PLNKPVIVVINKIDKIGPAKNVLPLI---------D---EIHKKHPELTEIVPISALKGANLDELVKTILKYL---
##### No 290 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=10-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL---RPLSYPDTDVILMCFSIDSP--DSLENIPEKWTPEVKHFCPN VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3R7W_B:AUTOPDB; Probability=99.5; Identities=13%; Resolution=2.773A; MatchedRegionTemplate=12-184; GTP-binding protein GTR1, GTP-binding protein; Rag GTPases, Gtr1p, Gtr2p, mTOR; HET: MSE, GNP; {Saccharomyces cerevisiae} ---------MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPS-LE--HF-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEY-AYKVNPS INIEVLIHKVDGLSEDFKVDAQRDIMQRT-G-EELLELGLDGVQVSFYLTSIFDH-SIYEAFSRIVQKLI--
##### No 291 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED----------YDRLRPLSYPDTDVILMCFSIDSPDS-LENIPEKWTPEVKHF CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3PQC_A:AUTOPDB; Probability=99.5; Identities=18%; Resolution=1.9A; MatchedRegionTemplate=21-194; Probable GTP-binding protein engB; Rossmann Fold, GTPase, GTP binding; HET: GDP, PEG; {Thermotoga maritima} ----PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPG-K--TRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS- -LNIPFTIVLTKMDKVKMSERAKKLE----------EHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK--
##### No 292 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=56-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD----------SLENIPEKWTPEVKHFC -PNVPIILVGNKKDLRNDEHTRRELAKMKQE---PVKPEEGRDMANR----------IGAFGYMECSAKTKDGVREVFEMATRAALQA >6OT0_A:AUTOPDB; Probability=99.5; Identities=16%; Resolution=3.9A; MatchedRegionTemplate=194-345; Smoothened homolog, Guanine nucleotide-binding protein; GPCR, Complex, Hedgehog signaling, SIGNALING; HET: CO1; {Homo sapiens} -------------------------------------------------------LHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHASMKLFDSICNNKW FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCSTDTKNVQFVFDAVTDVIIK-
##### No 293 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDY------DRLRPLSYPD--TDVILMCFSIDSPDSLENIPEKWTPEVKHFCP NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3W5I_B:AUTOPDB; Probability=99.5; Identities=18%; Resolution=2.15A; MatchedRegionTemplate=2-164; Ferrous iron transport protein B; G PROTEIN, IRON TRANSPORT, GTPASE; HET: SO4; {Gallionella capsiferriformans} ------QFKRIALLGMPNTGKSTLFNRMTGGAARVGNWPGITVELLSGKILL--GADMVEIIDLPGIYDLHGFSDDEQVVRHFLHDNVPDLALVILNATQIERQMS----LLLQLKQ--L NMNIVVLLNMSDEAKQYGITI-------------DSRKMSELLQ-IPVFQLSGKYGTGYQEALQAVTRALR--
##### No 294 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYD------RLRPLSYPD--TDVILMCFSIDSPDSLENIPEKWTPEVKHFCP NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3W5J_A:AUTOPDB; Probability=99.5; Identities=18%; Resolution=1.932A; MatchedRegionTemplate=1-163; Ferrous iron transport protein B; G PROTEIN, IRON TRANSPORT, GTPASE; HET: GDP; {Gallionella capsiferriformans} ------QFKRIALLGMPNTGKSTLFNRMTGGAARVGNWPGITVELLSGKILL--GADMVEIIDLPGIYDLHGFSDDEQVVRHFLHDNVPDLALVILNATQIERQMS----LLLQLKQ--L NMNIVVLLNMSDEAKQYGITI-------------DSRKMSELL-QIPVFQLSGKYGTGYQEALQAVTRALR--
##### No 295 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=9-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------------LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3IBY_D:AUTOPDB; Probability=99.5; Identities=13%; Resolution=2.5A; MatchedRegionTemplate=3-166; Ferrous iron transport protein B; G protein, G domain, iron; {Legionella pneumophila} --------THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEK-KTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTS----QLF- -ELGKPVVVALNMMDIAEHRGISID-------------TEKLESLLG-CSVIPIQAHKNIGIPALQQSLLHCS---
##### No 296 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR---------LRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFC PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR-IGAFGYMECSAKTKDGVREVFEMATRAALQA >2QU8_A:AUTOPDB; Probability=99.5; Identities=18%; Resolution=2.01A; MatchedRegionTemplate=47-225; Putative nucleolar GTP-binding protein 1; GTPase, malaria, plasmodium falciparum, Structural; HET: GDP; {Plasmodium falciparum} ----NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNL-YVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF SNKSIVIGFNKIDKCNMDSLSIDNK---------LLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLK--
##### No 297 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=9-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------------LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3IBY_B:AUTOPDB; Probability=99.5; Identities=13%; Resolution=2.5A; MatchedRegionTemplate=3-166; Ferrous iron transport protein B; G protein, G domain, iron; {Legionella pneumophila} --------THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVE-KKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTS----QLFE --LGKPVVVALNMMDIAEHRGISID-------------TEKLESLLG-CSVIPIQAHKNIGIPALQQSLLHCS---
##### No 298 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED----------YDRLRPLSYPDTDVILMCFSIDSPD-SLENIPEKWTPEVKHF CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3PQC_B:AUTOPDB; Probability=99.5; Identities=17%; Resolution=1.9A; MatchedRegionTemplate=21-194; Probable GTP-binding protein engB; Rossmann Fold, GTPase, GTP binding; HET: PEG, GDP; {Thermotoga maritima} ----PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPG-K--TRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS- -LNIPFTIVLTKMDKVKMSERAKKLEE----------HRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK--
##### No 299 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=55-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI----------DSPDSLENIPEKWTPEVKHF- CPNVPIILVGNKKDLRNDEHTRRELAKMKQE----PVKPEEGRDMA---------NRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5DO9_C:AUTOPDB; Probability=99.5; Identities=19%; Resolution=2.6A; MatchedRegionTemplate=198-350; Guanine nucleotide-binding protein G(q) subunit; GTP-Binding Protein alpha subunits, Gq-G11; HET: ALF, GDP; {Mus musculus} ------------------------------------------------------SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ-
##### No 300 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRL-------RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--- CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1UDX_A:AUTOPDB; Probability=99.5; Identities=22%; Resolution=2.07A; MatchedRegionTemplate=156-323; the GTP-binding protein Obg; GTP-binding protein, Obg, TGS domain; {Thermus thermophilus} ------LIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEV-SEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADE-PLKTL-ETLRKEVGAYDPA LLRRPSLVALNKVDLLEEEAVKA-LA-------------DALAR-EGLAVLPVSALTGAGLPALKEALHALV---
##### No 301 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=56-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD----------SLENIPEKWTPEVKHF- CPNVPIILVGNKKDLRNDEHTRRELAKMKQ---EPVKPEEGRDMAN--------R--IGAFGYMECSAKTKDGVREVFEMATRAALQA >1SHZ_D:AUTOPDB; Probability=99.5; Identities=17%; Resolution=2.85A; MatchedRegionTemplate=224-375; Guanine Nucleotide-Binding Protein Galpha(13):Galpha(i1) Chimera; SIGNAL TRANSDUCTION, PROTEIN COMPLEX, SIGNALING; HET: ALF, GDP; {Mus musculus, Rattus norvegicus} -------------------------------------------------------LHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQTNRMHESMKLFDSICNNKW FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK-
##### No 302 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI---------EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6HLU_A:AUTOPDB; Probability=99.5; Identities=21%; Resolution=3.29A; MatchedRegionTemplate=479-647; PROTEIN; GTPase, LRRK2, Roco proteins, hydrolase; {Chlorobaculum tepidum} -----LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNK----HYWLRHIEKYGG KSPVIVVMNKIDENPSYNIEQ------------KKINERFPAI-ENRFHRISCKNGDGVESIAKSLKSAVL--
##### No 303 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD------RLRPLSYP--DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3A1W_A:AUTOPDB; Probability=99.5; Identities=16%; Resolution=1.9001A; MatchedRegionTemplate=17-180; Iron(II) transport protein B; FeoB, iron transporter, small GTPase; {Thermotoga maritima} -----LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGV-TVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLY---LLLEIL---EME KKVILAMTAIDEAKKTGMKID-------------RYELQKHLG-IPVVFTSSVTGEGLEELKEKIVEYAQ--
##### No 304 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=56-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD----------SLENIPEKWTPEVKHFC -PNVPIILVGNKKDLRNDEHTRRELAKMKQEP----VKPEEGRDMANR---------IGAFGYMECSAKTKDGVREVFEMATRAALQA >1ZCA_A:AUTOPDB; Probability=99.5; Identities=20%; Resolution=2.9A; MatchedRegionTemplate=252-403; Galphai/12; GTP-binding, Lipoprotein, Membrane, Palmitate, Transducer; HET: GDP, ALF; {Mus musculus} -------------------------------------------------------IPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRLVESMNIFETIVNNKL FFNVSIILFLNKMDLLVEKVKSVSIKKHFPDFKGDPHRLEDVQRYLVQCFDRKRRNRSKPLFHHFTTAIDTENIRFVFHAVKDTILQ-
##### No 305 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=11-125 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4FMC_F:AUTOPDB; Probability=99.5; Identities=32%; Resolution=2.8A; MatchedRegionTemplate=14-129; ROrf2, Ras-related protein Rab-1A; alpha-beta fold, Rab1-GAP, Rab1, PROTEIN; HET: PGE, AF3, GDP; {Escherichia coli} ----------LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG NKCDLT-----------------------------------------------------------
##### No 306 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-126 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADI----------------EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4TMW_B:AUTOPDB; Probability=99.5; Identities=19%; Resolution=1.55A; MatchedRegionTemplate=519-654; eIF5B; Translation factor, GTPase, Subunit joining; HET: GTP; {Chaetomium thermophilum} ---DNLRSPICCILGHVDTGKTKLLDKIRQTNVQEGEAGGITQQIGATYFPVEAIKQKTAVVNKDGKFEFKVPGLLIIDTPGHESFSNLRSRGSSLCNIAILVVDIMHGLEPQTI-ESLR -LLRE--RKTPFVVALNKIDRLY----------------------------------------------------------
##### No 307 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLED----------YDRLRPLSYPD---TDVILMCFSIDSPDSLENIPEKWTPEV KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1PUI_A:AUTOPDB; Probability=99.5; Identities=14%; Resolution=2.0A; MatchedRegionTemplate=32-208; Probable GTP-binding protein engB; STRUCTURAL GENOMICS, NYSGXRC T16, GTPASE; HET: SO4; {Escherichia coli} ---PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV---ADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWA VD--SNIAVLVLLTKADKLASGARKAQLNMVR---------EAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS--
##### No 308 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD------RLRPLSYP--DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3A1S_B:AUTOPDB; Probability=99.5; Identities=16%; Resolution=1.5A; MatchedRegionTemplate=14-176; Iron(II) transport protein B; FeoB, iron transporter, small GTPase; HET: MPD, MSE, GDP; {Thermotoga maritima} -----LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEK-KEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLY---LLLEIL---EME KKVILAMTAIDEAKKTGMKIDR-------------YELQKHLG-IPVVFTSSVTGEGLEELKEKIVEYA---
##### No 309 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-127 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5DI3_B:AUTOPDB; Probability=99.5; Identities=18%; Resolution=2.5A; MatchedRegionTemplate=18-136; ADP-ribosylation factor-like protein 13B, ARF-like; G-protein, ADP ribosylation like protein; HET: GNP; {Chlamydomonas reinhardtii} -----PRKITIALLGLDNAGKTTLLNSIQGEVDRDT-TPTFGFN---STTLNEGKYKIEVFDLGGGKNIRGVWKKYLAEVHAIVYVVDAADPGRFEESKMTMAEVLENQFMRDKPICIFA NKQDLPTA---------------------------------------------------------
##### No 310 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DI--------EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3DPU_B:AUTOPDB; Probability=99.5; Identities=21%; Resolution=2.9A; MatchedRegionTemplate=455-623; Rab family protein; RocCOR, G-domain, COR, GTP-binding, Nucleotide-binding; {Chlorobaculum tepidum} -----LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNK----HYWLRHIEKYGG KSPVIVVMNKIDENPSYNIEQ------------KKINERFPAI-ENRFHRISCKNGDGVESIAKSLKSAVL--
##### No 311 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-127 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV--YVPTVFENY-VADIEVD---GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDS-PDSLENIPEKWTPEVKHFCPNV PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6VP8_A:AUTOPDB; Probability=99.5; Identities=25%; Resolution=3.5A; MatchedRegionTemplate=1331-1459; Leucine-rich repeat serine/threonine-protein kinase 2; Kinase, GTPase, SIGNALING PROTEIN; HET: TPO; {Homo sapiens} ----PYNRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAM-KPWLFNIKARASSS PVILVGTHLDVSDE---------------------------------------------------------
##### No 312 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=55-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI----------DSPDSLENIPEKWTPEVKHFC -PNVPIILVGNKKDLRNDEHTRREL----AKMKQEPVKPEEGRDM--------A-NRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3AH8_A:AUTOPDB; Probability=99.5; Identities=18%; Resolution=2.9A; MatchedRegionTemplate=206-358; Guanine nucleotide-binding protein G(i) subunit; Heterotrimeric G protein, GTPase, Galpha-q; HET: GDP; {Chromobacterium sp.} ------------------------------------------------------SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ-
##### No 313 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY-VPT-VFENYVADIEVDGKQVELALWDTAGLEDYD-RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPII LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2G3Y_A:AUTOPDB; Probability=99.5; Identities=24%; Resolution=2.4A; MatchedRegionTemplate=106-274; GTP-binding protein GEM; GEM, small GTPase, GDP, inactive; HET: GDP; {Homo sapiens} ----GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII LVGNKSDLVRCREVSVSE------------GRACAVVF-DCKFIETSAAVQHNVKELFEGIVRQVR--
##### No 314 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR--------LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1WF3_A:AUTOPDB; Probability=99.5; Identities=18%; Resolution=1.88A; MatchedRegionTemplate=5-172; GTP-binding protein; GTP-binding protein, GTPase, RIKEN Structural; HET: GNP, GOL; {Thermus thermophilus} ---EKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGK VPILLVGNKLDAAKYPEEA--MKA----------YH---ELLPEAEPRMLSALDERQVAELKADLLAL----
##### No 315 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=56-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKHFC -PNVPIILVGNKKDLRNDEHTRRELAKMKQ---EPVKPEEGRD-----MAN---------------------RIGAFGYMECSAKTKDGVREVFEMATRAALQA >4FID_A:AUTOPDB; Probability=99.5; Identities=14%; Resolution=2.62A; MatchedRegionTemplate=182-349; G protein alpha subunit; RAS-LIKE DOMAIN, ALL-HELICAL DOMAIN, GTP; HET: GDP; {Entamoeba histolytica} -------------------------------------------------------IPFHLIDVGGQRSERKKWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF LKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK-
##### No 316 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=55-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDS----------LENIPEKWTPEVKHF- CPNVPIILVGNKKDLRNDEHTRRELAKMKQE---PVKPEEGRDMANRI----------GAFGYMECSAKTKDGVREVFEMATRAALQA >4N0D_A:AUTOPDB; Probability=99.5; Identities=17%; Resolution=1.55A; MatchedRegionTemplate=226-378; Guanine nucleotide-binding protein G(i) subunit; Rossmann fold, Guanine nucleotide binding; HET: GSP; {Rattus norvegicus} ------------------------------------------------------DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIL-
##### No 317 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=55-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD----------SLENIPEKWTPEVKHF- CPNVPIILVGNKKDLRNDEHTRRELAKMK---QEPVKPEEGRDMANR----------IGAFGYMECSAKTKDGVREVFEMATRAALQA >1SVS_A:AUTOPDB; Probability=99.5; Identities=16%; Resolution=1.5A; MatchedRegionTemplate=223-375; Guanine nucleotide-binding protein G(i), alpha-1; Gi alpha subunit, K180P mutation; HET: GNP; {Rattus norvegicus} ------------------------------------------------------DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK-
##### No 318 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIE--------VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3DPU_A:AUTOPDB; Probability=99.5; Identities=21%; Resolution=2.9A; MatchedRegionTemplate=458-625; Rab family protein; RocCOR, G-domain, COR, GTP-binding, Nucleotide-binding; {Chlorobaculum tepidum} -----LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNK----HYWLRHIEKYGG KSPVIVVMNKIDENPSYNIEQ--K----------KINERFPAI-ENRFHRISCKNGDGVESIAKSLKSAV---
##### No 319 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=56-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI----------DSPDSLENIPEKWTPEVKHF- CPNVPIILVGNKKDLRNDEHTRR--------------ELAKMKQEPVKPEEGRDMA-NRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4EKC_C:AUTOPDB; Probability=99.5; Identities=17%; Resolution=7.4A; MatchedRegionTemplate=223-374; Guanine nucleotide-binding protein G(q) subunit; GTP-binding protein fold, Regulator, G; HET: ALF, GDP; {Mus musculus} -------------------------------------------------------VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAARE-FI-LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ-
##### No 320 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=56-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD----------SLENIPEKWTPEVKHFC -PNVPIILVGNKKDLRNDEHTRRELAKMKQEP----VKPEEGRDMAN----------RIGAFGYMECSAKTKDGVREVFEMATRAALQA >1ZCB_A:AUTOPDB; Probability=99.5; Identities=19%; Resolution=2.0A; MatchedRegionTemplate=246-398; G alpha i/13; GTP-binding, Lipoprotein, Membrane, Transducer, SIGNALING; HET: GDP; {Mus musculus} -------------------------------------------------------VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV FSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH-
##### No 321 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV--PTVFENYVADIEVDGKQVELALWDTAGLED----------YD-RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5M7H_A:AUTOPDB; Probability=99.5; Identities=16%; Resolution=3.15A; MatchedRegionTemplate=174-350; GTPase Der; GTPase, EngA, HYDROLASE; HET: PO4, GNP; {Bacillus subtilis (strain 168)} ----NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDT--SFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEG--IIEQDKRIAGYAH EA--GKAVVIVVNKWDAVDKDEST--MKEF------EENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE--
##### No 322 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=56-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI----------DSPDSLENIPEKWTPEVKHFC -PNVPIILVGNKKDLRNDEHTRREL----AKMKQEPVKPEEGRDM--------A-NRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4EKD_A:AUTOPDB; Probability=99.4; Identities=18%; Resolution=2.71A; MatchedRegionTemplate=223-374; Guanine nucleotide-binding protein G(q) subunit; GTP-binding, Regulator of G protein; HET: GDP, MES; {Mus musculus} -------------------------------------------------------VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ-
##### No 323 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-183 GAMGSPIRKKLVIVGDGACGKT-CLLIVNSKDQFP-E-VYVPTV-FENYVA--DIEVDG-----------------K----QVELALWD-----------TAGLEDYDRLRPLSYPDTDV ILMCFSIDSPDSL--ENIPEKWTPEVKH--FCPNVPIILVGNK-KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3L82_B:AUTOPDB; Probability=99.4; Identities=8%; Resolution=2.4A; MatchedRegionTemplate=176-386; Telomeric repeat-binding factor 1, F-box; TRFH domain, helix, GTPase domain; {Homo sapiens} ----IQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDG FIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPC-FYLAH----------ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES-
##### No 324 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV--PTVFENYVADIEVDGKQVELALWDTAGLEDY-----DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV---KHFC PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6S6A_A:AUTOPDB; Probability=99.4; Identities=14%; Resolution=2.63A; MatchedRegionTemplate=5-183; Ras-related GTP-binding protein A, Ras-related; small GTPases, mTORC1 activator, roadblock; HET: GTP, GDP, 9JE; {Homo sapiens} --PNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-GNLVLNLWDCGGLDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDM-HYYQSCLEAILQNS PDAKIFCLVHKMDLVQEDQRDLIFKE-R-----EEDLRRLSRPL-ECACFRTSIWD-ETLYKAWSSIVYQL---
##### No 325 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV--PTVFENYVADIEVDGKQVELALWDTAGLEDY-----DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV---KHFC PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6S6D_A:AUTOPDB; Probability=99.4; Identities=14%; Resolution=2.5A; MatchedRegionTemplate=5-183; Ras-related GTP-binding protein A, Ras-related; small GTPases, mTORC1 activator, roadblock; HET: GTP, GDP, 9JE; {Homo sapiens} --PNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-GNLVLNLWDCGGLDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDM-HYYQSCLEAILQNS PDAKIFCLVHKMDLVQEDQRDLIFKE-R-----EEDLRRLSRPL-ECACFRTSIWD-ETLYKAWSSIVYQL---
##### No 326 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV--PTVFENYVADIEVDGKQVELALWDTAGLEDY-----DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV---KHFC PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6S6D_B:AUTOPDB; Probability=99.4; Identities=14%; Resolution=2.5A; MatchedRegionTemplate=5-183; Ras-related GTP-binding protein A, Ras-related; small GTPases, mTORC1 activator, roadblock; HET: 9JE, GTP, GDP; {Homo sapiens} --PNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-GNLVLNLWDCGGLDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDM-HYYQSCLEAILQNS PDAKIFCLVHKMDLVQEDQRDLIFKE-R-----EEDLRRLSRPL-ECACFRTSIWD-ETLYKAWSSIVYQL---
##### No 327 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=55-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKHFC -PNVPIILVGNKKDLRNDEHTRREL------AKMKQ---EPVKPEEGRDMANR-I--------------GAFGYMECSAKTKDGVREVFEMATRAALQA >2XTZ_C:AUTOPDB; Probability=99.4; Identities=15%; Resolution=2.34A; MatchedRegionTemplate=219-381; GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT; HYDROLASE, G-PROTEIN SIGNALING, SELF-ACTIVATION, RAS-LIKE; HET: SO4, CSS, GSP; {ARABIDOPSIS THALIANA} ------------------------------------------------------GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC FEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLR--
##### No 328 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGLEDYDR-----LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE---VKHFC PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN--RIGAFGYMECSAKTKDGVREVFEMATRAALQA >4ARZ_A:AUTOPDB; Probability=99.4; Identities=16%; Resolution=3.1A; MatchedRegionTemplate=4-185; GTP-BINDING PROTEIN GTR1, GTP-BINDING PROTEIN; HYDROLASE, GTPASE, CELL GROWTH; HET: GTP, GDP; {SACCHAROMYCES CEREVISIAE} --MSSNNRKKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF-LGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYS PDAKIFVLLHKMDLVQLDKREELFQIMMK------NLSETSSEFGFPNLIGFPTSIWDE-SLYKAWSQIVCSL---
##### No 329 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY----------DR-LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6XRS_C:AUTOPDB; Probability=99.4; Identities=13%; Resolution=2.8A; MatchedRegionTemplate=204-376; GTPase Der; GTPase, KH domain, National Institute; HET: GDP; {Neisseria gonorrhoeae (strain NCCP11945)} -----AKHPVFAVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDI--ADQDATIAGFALE- -AGRALVVAVNKWDGISEERRE-QVKR--------DISRKL-YFLDFAKFHFISALKERGIDGLFESIQAAY---
##### No 330 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY----------DR-LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6XRS_D:AUTOPDB; Probability=99.4; Identities=13%; Resolution=2.8A; MatchedRegionTemplate=203-375; GTPase Der; GTPase, KH domain, National Institute; HET: GDP; {Neisseria gonorrhoeae (strain NCCP11945)} -----AKHPVFAVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDI--ADQDATIAGFALE- -AGRALVVAVNKWDGISEERRE-QVKR--------DISRKL-YFLDFAKFHFISALKERGIDGLFESIQAAY---
##### No 331 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-127 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPD----TDVILMCFSID-SPDSLENIPEKWTPEVKHF----CP NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1NRJ_B:AUTOPDB; Probability=99.4; Identities=16%; Resolution=1.7A; MatchedRegionTemplate=43-170; Signal recognition particle receptor alpha; Signal recognition particle, Transmembrane, Receptor; HET: GTP; {Saccharomyces cerevisiae} ---QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ---EPLSAADY--DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCEN GIDILIACNKSELFTA---------------------------------------------------------
##### No 332 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=55-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKHF- CPNVPIILVGNKKDLRNDEHTRREL------AKMKQ---EPVKPEEGRDMANR---------------IGAFGYMECSAKTKDGVREVFEMATRAALQA >2XTZ_A:AUTOPDB; Probability=99.4; Identities=14%; Resolution=2.34A; MatchedRegionTemplate=213-376; GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT; HYDROLASE, G-PROTEIN SIGNALING, SELF-ACTIVATION, RAS-LIKE; HET: SO4, GSP; {ARABIDOPSIS THALIANA} ------------------------------------------------------GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC FEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRR-
##### No 333 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=56-183 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKHFC -PNVPIILVGNKKDLRNDEHTRRELAKMKQEP---VKPEEGRD-----MA---------------------NRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4FID_B:AUTOPDB; Probability=99.4; Identities=15%; Resolution=2.62A; MatchedRegionTemplate=183-350; G protein alpha subunit; RAS-LIKE DOMAIN, ALL-HELICAL DOMAIN, GTP; HET: MSE, GDP, MLY; {Entamoeba histolytica} -------------------------------------------------------IPFHLIDVGGQRSERKKWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF LKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK-
##### No 334 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=9-93 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT-VFENYVADIEVDGKQV-------------------ELALWDTAGLEDYDR-------LRPLSYPDTDVILMCFSIDSPD SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2DBY_A:AUTOPDB; Probability=99.4; Identities=15%; Resolution=1.76A; MatchedRegionTemplate=3-114; GTP-binding protein; GTP-binding protein, GDP, Structural Genomics; HET: GDP; {Thermus thermophilus} --------LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDP -------------------------------------------------------------------------------------------
##### No 335 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVP-TVFENYVADIEVDGKQVELALWDTAGLEDYDR------------LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1MKY_A:AUTOPDB; Probability=99.4; Identities=18%; Resolution=1.9A; MatchedRegionTemplate=178-355; Probable GTP-binding protein engA; GTPase, EngA, Der, KH-Domain, tandem; HET: GDP, PO4; {Thermotoga maritima} ----ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI--DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ--RMAGLM ERR--GRASVVVFNKWDLVVHREKR--YDEF------TKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA--
##### No 336 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD-----------RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4DCU_A:AUTOPDB; Probability=99.4; Identities=15%; Resolution=2.0A; MatchedRegionTemplate=194-370; GTPase Der; GTPASE, ENGA, GDP, PROTEIN BINDING; HET: GDP; {Bacillus subtilis} ----NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEG--IIEQDKRIAGYAHE- -AGKAVVIVVNKWDAVDKDEST--MKEF------EENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE--
##### No 337 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR-------LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5KH0_B:AUTOPDB; Probability=99.4; Identities=18%; Resolution=2.8A; MatchedRegionTemplate=10-172; HydF; [FEFE]-HYDROGENASE MATURASE OXIDOREDUCTASE, OXIDOREDUCTASE; HET: SF4; {Thermosipho melanesiensis (strain DSM 12029 / CIP 104789 / BI429)} --ASGGFRKYIAITGRRNVGKSSFMNALIGQEVSIVSNVAGTTTDPVFKSMELS-PVGPITLIDTPGLDDVGELGIKRIKKAKKSLYRADCGILIVDDIPGNFEEQ----IIKLFKEL-- EIPYFIAINKIDTIDHENIEK-----------------EYKKYN-VPILKVSALKKIGFEKIGKTINSIL---
##### No 338 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR-------LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5KH0_D:AUTOPDB; Probability=99.4; Identities=18%; Resolution=2.8A; MatchedRegionTemplate=10-172; HydF; [FEFE]-HYDROGENASE MATURASE OXIDOREDUCTASE, OXIDOREDUCTASE; HET: SF4; {Thermosipho melanesiensis (strain DSM 12029 / CIP 104789 / BI429)} --ASGGFRKYIAITGRRNVGKSSFMNALIGQEVSIVSNVAGTTTDPVFKSMELS-PVGPITLIDTPGLDDVGELGIKRIKKAKKSLYRADCGILIVDDIPGNFEEQ----IIKLFKEL-- EIPYFIAINKIDTIDHENIEK-----------------EYKKYN-VPILKVSALKKIGFEKIGKTINSIL---
##### No 339 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--------RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3GEI_B:AUTOPDB; Probability=99.4; Identities=19%; Resolution=3.4A; MatchedRegionTemplate=234-399; tRNA modification GTPase mnmE (E.C.3.6.-.-); G protein, G domain, GTPase; HET: GCP; {Chlorobium tepidum} -----SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYI-EECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDE-LTEIRELKAA-HP AAKFLTVANKLDRAANADAL--I-------------RAIADG-TGTEVIGISALNGDGIDTLKQHMGDLV---
##### No 340 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=9-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLE-----------DYD----RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTP- --------EVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2CXX_A:AUTOPDB; Probability=99.4; Identities=15%; Resolution=1.7A; MatchedRegionTemplate=3-184; Probable GTP-binding protein engB; GTP-binding protein, Structural Genomics, NPPSFA; HET: GDP; {Pyrococcus horikoshii} --------ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK-I--IE--IEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEII---KRWEKR GEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQE--VINFLAEKF------EVPLSEI-DKVFIPISAKFGDNIERLKNRIFEVIR--
##### No 341 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-NYVADIEVDGKQVELALWDTAGLEDYD-------RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTP-------- ----------------------------------------------------------EVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK TKDGVREVFEMATRAALQA >4A9A_A:AUTOPDB; Probability=99.4; Identities=15%; Resolution=2.67A; MatchedRegionTemplate=71-300; RIBOSOME-INTERACTING GTPASE 1, TRANSLATION MACHINERY-ASSOCIATED; TRANSLATION, DRG-DFRP COMPLEX, RIBOSOME BINDING; {SACCHAROMYCES CEREVISIAE} -----TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRY--KGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNK TPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLIDVLEASSRRYMPAIYVLNKIDSLSIEELEL--------------L------YRIPNAVPISSG QDWNLDELLQVMWDRLN--
##### No 342 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY-VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--------RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3GEE_A:AUTOPDB; Probability=99.4; Identities=18%; Resolution=2.95A; MatchedRegionTemplate=239-404; tRNA modification GTPase mnmE (E.C.3.6.-.-); G protein, GTPase, tRNA modification; HET: GDP, FON; {Chlorobium tepidum} -----SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYI-EECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDE-LTEIRELKAA-HP AAKFLTVANKLDRAANADAL--IR-------------AIADG-TGTEVIGISALNGDGIDTLKQHMGDLV---
##### No 343 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY-VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--------RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3GEI_A:AUTOPDB; Probability=99.4; Identities=18%; Resolution=3.4A; MatchedRegionTemplate=234-399; tRNA modification GTPase mnmE (E.C.3.6.-.-); G protein, G domain, GTPase; HET: GCP; {Chlorobium tepidum} -----SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYI-EECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDE-LTEIRELKAA-HP AAKFLTVANKLDRAANADAL--IR-------------AIADG-TGTEVIGISALNGDGIDTLKQHMGDLV---
##### No 344 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=8-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-PTVFENYVADIEVDGKQVELALWDTAGLE-------DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2DYK_B:AUTOPDB; Probability=99.4; Identities=22%; Resolution=1.96A; MatchedRegionTemplate=1-160; GTP-binding protein; GTPase, ribosome-binding protein, Structural Genomics; HET: GDP; {Thermus thermophilus} -------MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRD-LKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRA--ELTQADYEVAEYLRR--KG KPVILVATKVDDPKHELYLG-----------------PLYGLGFGDPIPTSSEHARGLEELLEAIWERL---
##### No 345 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGLEDYDR-----LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTP---EVKHFC PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN--RIGAFGYMECSAKTKDGVREVFEMATRAALQA >3R7W_C:AUTOPDB; Probability=99.4; Identities=14%; Resolution=2.773A; MatchedRegionTemplate=5-181; GTP-binding protein GTR1, GTP-binding protein; Rag GTPases, Gtr1p, Gtr2p, mTOR; HET: GNP; {Saccharomyces cerevisiae} ------LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF-LGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYS PDAKIFVLLHKMDLVQLDKREELFQIMMK------NLSETSSEFGFPNLIGFPTSIWDE-SLYKAWSQIVCS----
##### No 346 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-179 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRL----------RPLS--YPDTDVILMCFSIDSPDSLENIPEKWTPEVK HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4Q5I_B:AUTOPDB; Probability=99.4; Identities=15%; Resolution=2.8A; MatchedRegionTemplate=3-166; Ferrous iron transport protein B; G PROTEIN, IRON TRANSPORT, GTPASE; {Escherichia coli} ------KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQF--STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER---NLYLTLQLL- --ELGIPCIVALNMLDIAEKQNIRIE-------------IDALSARLG-CPVIPLVSARGRGIEALKLAIDR-----
##### No 347 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEV--DGKQVELALWDTAGLEDYDRLRPLSYPD----TDVILMCFSIDSPDSLENIPEKWTPEVKHFC--- -----------------------------------PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6RLB_E:AUTOPDB; Probability=99.4; Identities=18%; Resolution=4.5A; MatchedRegionTemplate=31-241; PROTEIN; dynein, cilia, intraflagellar transport, complex; {Homo sapiens} ----EIAEKFVFFIGSKNGGKTTIILRCLDRDEP--PKPTLALEYTYGRRAKGHNTPKDIAHFWELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKPNDLWPTMENLLQATKSHVDKV IMKLGKTNAKAVSEMRQKIWNNMPKDHPDHELIDPFPVPLVIIGSKYDVFQDFES-EKR------KVICKTLRFVAHYYG-ASLMFTSK-SEALLLKIRGVINQLA---
##### No 348 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEV--DGKQVELALWDTAGLEDYDRLRPLSYPD----TDVILMCFSIDSPDSLENIPEKWTPEVKHFC--- -----------------------------------PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6SC2_F:AUTOPDB; Probability=99.4; Identities=18%; Resolution=3.9A; MatchedRegionTemplate=31-241; DYNC2H1 variant protein; dynein, cilia, intraflagellar transport, complex; HET: ADP, ATP; {Homo sapiens} ----EIAEKFVFFIGSKNGGKTTIILRCLDRDEP--PKPTLALEYTYGRRAKGHNTPKDIAHFWELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKPNDLWPTMENLLQATKSHVDKV IMKLGKTNAKAVSEMRQKIWNNMPKDHPDHELIDPFPVPLVIIGSKYDVFQDFES-EKR------KVICKTLRFVAHYYG-ASLMFTSK-SEALLLKIRGVINQLA---
##### No 349 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-NYVADIEVDGKQVELALWDTAGLEDYDRL----------RPLS--YPDTDVILMCFSIDSPDSLENIPEKWTPEVK HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3I8S_B:AUTOPDB; Probability=99.4; Identities=14%; Resolution=1.8A; MatchedRegionTemplate=2-166; Ferrous iron transport protein B; GTPase, GPCR, iron uptake, Feo; {Escherichia coli} ------KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFS--TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER---NLY-LTLQLL --ELGIPCIVALNMLDIAEKQNIRIE-------------IDALSARLG-CPVIPLVSTRGRGIEALKLAIDRY----
##### No 350 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-126 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVD----------------GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4NCF_A:AUTOPDB; Probability=99.4; Identities=18%; Resolution=3.015A; MatchedRegionTemplate=407-542; Eukaryotic translation initiation factor 5B; Translation initiation, GTPase, eIF5B/IF2, Subunit; HET: GDP; {Saccharomyces cerevisiae} ---KDLRSPICCILGHVDTGKTKLLDKIRQTNVQGGEAGGITQQIGATYFPIDAIKAKTKVMAEYEKQTFDVPGLLVIDTPGHESFSNLRSRGSSLCNIAILVIDIMHGLEQQ-TIES-I KLLRD--RKAPFVVALNKIDRLY----------------------------------------------------------
##### No 351 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-126 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIE----------------VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4TMX_A:AUTOPDB; Probability=99.4; Identities=19%; Resolution=1.5A; MatchedRegionTemplate=521-655; eIF5B; Translation factor, GTPase, monovalent cation; HET: GTP, EDO; {Chaetomium thermophilum} ----NLRSPICCILGHVNTGKTKLLDKIRQTNVQEGEAGGITQQIGATYFPVEAIKQKTAVVNKDGKFEFKVPGLLIIDTPGHESFSNLRSRGSSLCNIAILVVDIMHGLEPQT-IESL- RLLRE--RKTPFVVALNKIDRLY----------------------------------------------------------
##### No 352 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=56-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDS----------PDSLENIPEKWTPEVKHF- CPNVPIILVGNKKDLRNDEHTR--RELAKMKQEPV----------------KPEEGRDM-----ANR-------IGAFGYMECSAKTKDGVREVFEMATRAALQA >6AU6_A:AUTOPDB; Probability=99.4; Identities=17%; Resolution=1.7A; MatchedRegionTemplate=237-404; Guanine nucleotide-binding protein G(s) subunit; G protein, GDP, active conformation; HET: GDP, GOL; {Homo sapiens} -------------------------------------------------------VNFHMFDVGGQRDERRKWIQSFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW LRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQ--
##### No 353 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4B43_A:AUTOPDB; Probability=99.4; Identities=22%; Resolution=1.937A; MatchedRegionTemplate=71-233; TRANSLATION INITIATION FACTOR IF-2; TRANSLATION, INITIATION, GTP HYDROLYSIS MECHANISM; HET: GOL; {THERMUS THERMOPHILUS} -----RRPPVVVIMGHVDHGLTTLLDYLRKSRIAEKEAGGITQH-VGAFEVKTPQGTVVFIDTPGAEAFTTIRQRGAKVADIAVIVIAADDGI-MPQT-EEAIAHAKA--AGAKLIFAIN KIDLPQADPEK-VKRQLMERG------FVPEEYGGDAIVIPISAKTGQGVQDLLEMILLL----
##### No 354 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-126 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE----NYVA-------------DIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5YT0_A:AUTOPDB; Probability=99.3; Identities=21%; Resolution=1.89A; MatchedRegionTemplate=26-160; Probable translation initiation factor IF-2; translation initiation factor, ribosomal stalk; HET: GDP; {Aeropyrum pernix K1} ----RLRQPIVVVLGHVDHGKTTLLDKIRRTAVAAKEAGGITQHIGASIVPADVIEKIAEPLKKVIPVKLVIPGLLFIDTPGHELFSNLRRRGGSVADFAILVVDIMEGF--KPQTYEAL ELLKE--RRVPFLIAANKIDRIP----------------------------------------------------------
##### No 355 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-126 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY---VADI--------------EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4N3N_A:AUTOPDB; Probability=99.3; Identities=19%; Resolution=2.752A; MatchedRegionTemplate=520-654; Eukaryotic translation initiation factor 5B-like; Translation initiation, GTPase, eIF5B/IF2, Subunit; {Chaetomium thermophilum var. thermophilum} ----NLRSPICCILGHVDTGKTKLLDKIRQTNVQEGEAGGITQQIGATYFPVEAIKQKTAVVNKDGKFEFKVPGLLIIDTPGHESFSNLRSRGSSLCNIAILVVDIMHGLEPQ-TIES-L RLLRE--RKTPFVVALNKIDRLY----------------------------------------------------------
##### No 356 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVP-TVFENYVADIEVDGKQVELALWDTAGLEDYDR--------LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3GEH_A:AUTOPDB; Probability=99.3; Identities=21%; Resolution=3.2A; MatchedRegionTemplate=220-379; tRNA modification GTPase mnmE (E.C.3.6.-.-); G protein, GTPase, tRNA modification; HET: FON, GDP; {Nostoc sp. PCC} ------TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVV--GGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD--QEIYEQV---- KHRPLILVMNKIDLVEKQLITS------------L---EY--PENITQIVHTAAAQKQGIDSLETAILEIV---
##### No 357 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4B3X_A:AUTOPDB; Probability=99.3; Identities=23%; Resolution=1.95A; MatchedRegionTemplate=71-233; TRANSLATION INITIATION FACTOR IF-2; TRANSLATION, INITIATION, GTP HYDROLYSIS MECHANISM; HET: GOL; {THERMUS THERMOPHILUS} -----RRPPVVVIMGHVDHGKTTLLDYLRKSRIAEKEGGGITQ-HVGAFEVKTPQGTVVFIDTPGHEAFTTIRQRGAKVADIAVIVIAADDGI--MPQTEEAIAHAKA--AGAKLIFAIN KIDLPQADPE-KVKRQLME------RGFVPEEYGGDAIVIPISAKTGQGVQDLLEMILLL----
##### No 358 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-126 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY---VADI--------------EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4N3G_A:AUTOPDB; Probability=99.3; Identities=18%; Resolution=3.203A; MatchedRegionTemplate=875-1010; Eukaryotic translation initiation factor 5B-like; Translation initiation, GTPase, eIF5B/IF2, Subunit; HET: LAC; {Chaetomium thermophilum var. thermophilum} ---DNLRSPICCILGHVDTGKTKLLDKIRQTNVQEGEAGGITQQIGATYFPVEAIKQKTAVVNKDGKFEFKVPGLLIIDTPGHESFSNLRSRGSSLCNIAILVVDIMHGLEPQ-TIESL- RLLRE--RKTPFVVALNKIDRLY----------------------------------------------------------
##### No 359 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=56-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDS----------PDSLENIPEKWTPEVKHFC -PNVPIILVGNKKDLRNDEHT--RRELAKMKQEPVK----------------PEEGRDM-----AN-------RIGAFGYMECSAKTKDGVREVFEMATRAALQA >6EG8_I:AUTOPDB; Probability=99.3; Identities=16%; Resolution=2.8A; MatchedRegionTemplate=212-379; Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit; G protein Heterotrimer GDP GPCR; HET: GDP; {Homo sapiens} -------------------------------------------------------VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW LRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQ--
##### No 360 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-126 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT----------V----------F-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP EKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3TR5_A:AUTOPDB; Probability=99.3; Identities=19%; Resolution=2.11A; MatchedRegionTemplate=12-150; Peptide chain release factor 3; Protein synthesis, TRANSLATION; HET: MSE, GDP; {Coxiella burnetii} ----TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKG--VEPRT IKLMEVCRL--RHTPIMTFINKMDRDT----------------------------------------------------------
##### No 361 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP--TV-FEN--------YVA-----D---IEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK WTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3PEN_A:AUTOPDB; Probability=99.3; Identities=16%; Resolution=2.3005A; MatchedRegionTemplate=4-190; Translation initiation factor 2 subunit; RNA, Met, Archaeal Proteins, Binding; HET: 5GP, GDP; {Sulfolobus solfataricus} --PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREH FV-ALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQ------FTKG--TWAENVPIIPVSALHKINIDSLIEGIEEY----
##### No 362 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-126 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEV----------------DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4N3S_A:AUTOPDB; Probability=99.3; Identities=17%; Resolution=1.832A; MatchedRegionTemplate=407-541; Domains1-3; Translation initiation, GTPase, eIF5B/IF2, Subunit; HET: EDO, GOL; {Saccharomyces cerevisiae} ----DLRSPICCILGHVDTGKTKLLDKIRQTNVQGGEAGGITQQIGATYFPIDAIKAKTKVMAEYEKQTFDVPGLLVIDTPGHESFSNLRSRGSSLCNIAILVIDIMHGLEQQ-TIE-SI KLLRD--RKAPFVVALNKIDRLY----------------------------------------------------------
##### No 363 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVP-TVFENYVADIEVDGKQVELALWDTAGLEDYD---------RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1XZP_A:AUTOPDB; Probability=99.3; Identities=21%; Resolution=2.3A; MatchedRegionTemplate=236-397; Probable tRNA modification GTPase trmE; GTP-binding, THF-binding, tRNA-modification, HYDROLASE; HET: SO4; {Thermotoga maritima} ------RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIV--IRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEE-D-RKILERI--- -KNKRYLVVINKVDVVEKINEEE-IK---------N---KL-G--TDRHMVKISALKGEGLEKLEESIYRET---
##### No 364 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=8-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGLEDYD---------RLRPLSYPDTDVILMCFSIDSPDSLE--NIPEKWTPEVKH FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2E87_A:AUTOPDB; Probability=99.3; Identities=20%; Resolution=2.35A; MatchedRegionTemplate=168-335; Hypothetical protein PH1320; GTP-binding, GTPase, Obg, bundle, GDP; HET: SO4, GDP; {Pyrococcus horikoshii} -------IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVG--QFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLF-EEVHG EFKDLPFLVVINKIDVADEENIK-R-------------LEKFVKEKG-LNPIKISALKGTGIDLVKEEIIKTL---
##### No 365 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5LMV_a:AUTOPDB; Probability=99.3; Identities=23%; Resolution=4.9A; MatchedRegionTemplate=126-288; 30S ribosomal protein S2, 30S; ribosome, translation, initiation factors, 30S; HET: G7M, 4SU, OMC, 5MU, PSU; {Thermus thermophilus HB8} -----RRPPVVVIMGHVDHGKTTLLDYLRKSRIAEKEAGGITQH-VGAFEVKTPQGTVVFIDTPGHEAFTTIRQRGAKVADIAVIVIAADDGI-MPQTE-EAIAHAKA--AGAKLIFAIN KIDLPQADPE-KVKRQLME------RGFVPEEYGGDAIVIPISAKTGQGVQDLLEMILLL----
##### No 366 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-126 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY---V--------------ADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1G7S_A:AUTOPDB; Probability=99.3; Identities=16%; Resolution=2.0A; MatchedRegionTemplate=3-136; TRANSLATION INITIATION FACTOR IF2/EIF5B; translational GTPase, TRANSLATION; HET: GDP; {Methanothermobacter thermautotrophicus} -----IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEG--FKPQTQEAL NILRM--YRTPFVVAANKIDRIH----------------------------------------------------------
##### No 367 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-TVFENYVADIEVDGKQVELALWDTAGLEDYDR--L------RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-C PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5ADY_6:AUTOPDB; Probability=99.3; Identities=21%; Resolution=4.5A; MatchedRegionTemplate=196-361; 50S RIBOSOMAL PROTEIN L32, 50S; RIBOSOME, RIBOSOME RESCUE; HET: GNP; {ESCHERICHIA COLI K-12} ------DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVA-DVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRVQENI-EAVNTVLEEIDA HEIPTLLVMNKIDMLEDFEPRI------------D----RDE-ENKPNRVWLSAQTGAGIPQLFQALTERL---
##### No 368 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-PTVFENYVADIEVDGKQVELALWDTAGLEDY--DRLRP------LSYPDTDVILMCFSIDSPDSL-ENIPEKWTPEVKHF- CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR--IGAFGYMECSAKTKDGVREVFEMATRAALQA >2QTH_A:AUTOPDB; Probability=99.3; Identities=16%; Resolution=2.0A; MatchedRegionTemplate=177-352; GTP-binding protein; beta-alpha-barrels, GTP-binding, Nucleotide-binding, NUCLEOTIDE BINDING; HET: GDP, ACT; {Sulfolobus solfataricus P2} -----NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI--NNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIG VSGKPILVTLNKIDKINGDLYK-KLDL----------VEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLA---
##### No 369 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=78-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5XKT_B:AUTOPDB; Probability=99.3; Identities=15%; Resolution=1.8A; MatchedRegionTemplate=118-203; Urease accessory protein UreG; SIMIBI Class GTPase, HYDROLASE; HET: GNP; {Klebsiella pneumoniae subsp. rhinoscleromatis SB3432} -----------------------------------------------------------------------------ELADLTIYVIDVAEGEKIPR------KGGPG--ITRSDFLVIN KTDLAPYVGA--SLKVMA------SD---TQRMRGDRPWTFTNLKQGDGLSTIIAFLEDKGM--
##### No 370 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLEDY------DRLRP----LSYP---DTDVILMCFSIDSPDSLENIPEKWTPEV KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5UCV_A:AUTOPDB; Probability=99.3; Identities=11%; Resolution=1.8A; MatchedRegionTemplate=30-206; Probable GTP-binding protein EngB; SSGCID, GDP, YsxC, engB, ribosome; HET: GOL, GDP; {Neisseria gonorrhoeae (strain NCCP11945)} -----DTPLEIAFVGRSNAGKSSAINTLTNHVRLAYVSKTPGRTQHINFFELQ---NGNFMVDLPGYGYAQVPEAVRAHWVNLLGDYLRHRKQLIGLVLIMDARHPL--KELDIRMLDFF HT--TGRPVHILLSKADKLSKNEQIKTLSQVK------KLLKPYS-DRQNISVQLFSSLKKQGIDEANRTVGSWFD--
##### No 371 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-178 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPE---------VYVPTVFENYVA-DIEVD---GKQVELALWDTA-GLEDYDRLRPLSYPD----TDVILMCFSIDSPDSLENIPEKW TPEVKHFC------------------------------------------------------PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD GVREVFEMATRAALQA >4W7G_A:AUTOPDB; Probability=99.3; Identities=8%; Resolution=2.1A; MatchedRegionTemplate=92-335; Dynein Light Intermediate Chain; molecular motor, G protein, intracellular; {Chaetomium thermophilum} ----RLPEKNIILLGGTVDSQREFFEALSSNDRRTLDRSSSRSPPVANSFALGYTYYDVLDADHEDTLARISIYTLTDPSPAFASLLQPILTPDSIPNTLIVILLDWSQPWKWMRQLREW ILLLRTVLVSLSHECKATMEEVMLSWRDRGRGGGINLDGSMTAPTADAEPALPLGPGEWEDGLGLPLCVVCQNAEKMEYLEKTQGWKEE-EFDVVLQFMRTVLLKHG-ASLIYTTPSVPS QLPSLIHSSL------
##### No 372 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-179 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4KJZ_B:AUTOPDB; Probability=99.3; Identities=23%; Resolution=2.8A; MatchedRegionTemplate=72-233; Translation initiation factor IF-2; Translation Initiation Factor/IF2 Superfamily, GTPase; HET: GDP; {Thermus thermophilus} -----RRPPVVVIMGHVDHGKTTLLDYLRKSRIAEKEAGGITQH-VGAFEVKTPQGTVVFIDTPGHEAFTTIRQRGAKVADIAVIVIAADDGIM-PQT-EEAIAHAKA--AGAKLIFAIN KIDLPQADPE-KVKRQLME------RGFVPEEYGGDAIVIPISAKTGQGVQDLLEMILL-----
##### No 373 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-179 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4KJZ_C:AUTOPDB; Probability=99.3; Identities=23%; Resolution=2.8A; MatchedRegionTemplate=72-233; Translation initiation factor IF-2; Translation Initiation Factor/IF2 Superfamily, GTPase; HET: GDP; {Thermus thermophilus} -----RRPPVVVIMGHVDHGKTTLLDYLRKSRIAEKEAGGITQH-VGAFEVKTPQGTVVFIDTPGHEAFTTIRQRGAKVADIAVIVIAADDGIM-PQTE-EAIAHAKA--AGAKLIFAIN KIDLPQADPE-KVKRQLME------RGFVPEEYGGDAIVIPISAKTGQGVQDLLEMILL-----
##### No 374 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-126 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIE----------------VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3WBI_A:AUTOPDB; Probability=99.3; Identities=17%; Resolution=2.35A; MatchedRegionTemplate=6-140; Eukaryotic translation initiation factor 5B; flexible, eukaryotic translation initiation, eIF1A; {Saccharomyces cerevisiae} ----DLRSPICCILGHVDTGKTKLLDKIRQTNVQGGEAGGITQQIGATYFPIDAIKAKTKVMAEYEKQTFDVPGLLVIDTPGHESFSNLRSRGSSLCNIAILVIDIMHGLEQQ-TIES-I KLLRD--RKAPFVVALNKIDRLY----------------------------------------------------------
##### No 375 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-PTVFENYVADIEVDGKQVELALWDTAGLEDYD--RLRPL------SYPDTDVILMCFSIDSPDSL-ENIPEKWTPEVKHF- CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI--GAFGYMECSAKTKDGVREVFEMATRAALQA >2QTF_A:AUTOPDB; Probability=99.3; Identities=16%; Resolution=2.0A; MatchedRegionTemplate=177-352; GTP-binding protein; beta-alpha-barrels, GTP-binding, Nucleotide-binding, NUCLEOTIDE BINDING; HET: ACT; {Sulfolobus solfataricus P2} -----NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI--NNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIG VSGKPILVTLNKIDKINGDLYK-KLDL----------VEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLA---
##### No 376 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-127 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYD--------RL---RPLSYPDTDVILMCFSIDSPDSLE-NIPEKWTPEVK HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3P1J_D:AUTOPDB; Probability=99.2; Identities=16%; Resolution=2.58A; MatchedRegionTemplate=23-157; GTPase IMAP family member 2; immunity, structural genomics consortium, gtpase; HET: UNX; {Homo sapiens} -----RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFG EDAMGHTIVLFTHKEDLNGG---------------------------------------------------------
##### No 377 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-PTVFENYVADIEVDGKQVELALWDTAGLEDYD--RLRPL------SYPDTDVILMCFSIDSPDSL-ENIPEKWTPEVKHF- CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR--IGAFGYMECSAKTKDGVREVFEMATRAALQA >3KXI_A:AUTOPDB; Probability=99.2; Identities=16%; Resolution=2.65A; MatchedRegionTemplate=177-352; GTP-binding protein (HflX); SsGBP, HflX, GTPase, Mg++ ion; HET: GDP; {Sulfolobus solfataricus} -----NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI--NNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIG VSGKPILVTLNKIDKINGDLYK-KLDL----------VEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLA---
##### No 378 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVF--ENYVA-DI------------------------EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID SPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4RD4_A:AUTOPDB; Probability=99.2; Identities=15%; Resolution=1.3A; MatchedRegionTemplate=5-202; Translation initiation factor 2 subunit; Rossmann fold, TRANSLATION; HET: GNP; {Sulfolobus solfataricus} --PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAAN EPFPQPQTREHFVA-LGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQ------FTKGT--WAENVPIIPVSALHKINIDSLIEGIEEY----
##### No 379 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVF--ENYVA-DI------------------------EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID SPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4RJL_A:AUTOPDB; Probability=99.2; Identities=15%; Resolution=1.6401A; MatchedRegionTemplate=5-202; Translation initiation factor 2 subunit; gamma subunit, g-protein, translation, translation; HET: FMT, 7PG, GCP; {Sulfolobus solfataricus} --PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAAN EPFPQPQTREHFVA-LGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQ------FTKGT--WAENVPIIPVSALHKINIDSLIEGIEEY----
##### No 380 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-182 GAMGSPIRKKLVIVGD--GACGKTCLLIVNSKDQFPEVYVPTVFENYV------ADIEVDGK-QVELALWDTA---------------------------------GLEDYDRLRPLSYP DTDVILMCFSIDSPDSL--ENIPEKWTPEVKH--FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3L2O_B:AUTOPDB; Probability=99.2; Identities=8%; Resolution=2.8A; MatchedRegionTemplate=154-361; S-phase kinase-associated protein 1/F-box only; small G protein fold, Ubl; {Homo sapiens} ------NEPRFAMFGPGLEELNT-SLVLSLMSSEE---LCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCE VVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE----------LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE--
##### No 381 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-172 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY------------------------V-------PTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI DSPDS------LENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI----GAFGYMECSAKTKDGVREVFEMATRAALQA >5O8W_A:AUTOPDB; Probability=99.2; Identities=12%; Resolution=1.67A; MatchedRegionTemplate=3-202; Elongation factor 1-alpha, Elongation factor; PROTEIN-PROTEIN COMPLEX, TRANSLATION, COVALENT MODIFICATION; HET: GLN, MSE, PGE, MLZ, M3L; {Saccharomyces cerevisiae} --GKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITID-IALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAG GVGEFEAGISKDGQTRE-HALLAFT--LGVRQLIVAVNKMDSVKWDES--RFQEIV------KETSNFIKKVGYNPKTVPFVPISGWNGDNMIE------------
##### No 382 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-175 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT-----------------------------VFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID SPD---SLE---NIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI-----GAFGYMECSAKTKDGVREVFEMATRAALQA >3J5Y_B:AUTOPDB; Probability=99.2; Identities=15%; Resolution=9.7A; MatchedRegionTemplate=209-412; Eukaryotic peptide chain release factor; Translation termination, eRF1, eRF3, tRNAleu; {Oryctolagus cuniculus} ----KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISAR KGEFETGFEKGGQTREH-AMLAK--TAGVKHLIVLINKMDDPTVNWSIERYEECK------EKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKEQSD---------
##### No 383 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-127 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYD--------RL---RPLSYPDTDVILMCFSIDSPDSLE-NIPEKWTPEVK HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3P1J_C:AUTOPDB; Probability=99.2; Identities=16%; Resolution=2.58A; MatchedRegionTemplate=23-157; GTPase IMAP family member 2; immunity, structural genomics consortium, gtpase; HET: UNX; {Homo sapiens} -----RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFG EDAMGHTIVLFTHKEDLNGG---------------------------------------------------------
##### No 384 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-126 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV--------------Y----------V-------PTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI DSPDS------LENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1F60_A:AUTOPDB; Probability=99.2; Identities=13%; Resolution=1.67A; MatchedRegionTemplate=3-160; ELONGATION FACTOR EEF1A/ELONGATION FACTOR EEF1BA; protein-protein complex, TRANSLATION; {Saccharomyces cerevisiae} --GKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITID-IALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAG GVGEFEAGISKDGQTRE-HALLAFT--LGVRQLIVAVNKMDSVK----------------------------------------------------------
##### No 385 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=9-92 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFP-EVYVPTVFENYVA--------------------DIEVDG--KQVELALWDTAG-------LEDYDRLRPLSYPDTDVILMCFSID SPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1WXQ_A:AUTOPDB; Probability=99.2; Identities=14%; Resolution=2.6A; MatchedRegionTemplate=2-115; GTP-binding protein; GTP-binding protein, Structural Genomics, RIKEN; {Pyrococcus horikoshii} --------MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDAT GK--------------------------------------------------------------------------------------------
##### No 386 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-171 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY------------------------VPTV-----FENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID SPDS------LENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI----GAFGYMECSAKTKDGVREVFEMATRAALQA >6RA9_B:AUTOPDB; Probability=99.2; Identities=11%; Resolution=2.7A; MatchedRegionTemplate=5-205; Elongation Factor 1A2; Moonlighting protein, RNA binding protein; HET: GOL, SO4, GDP, POK, GPE, SEP; {Oryctolagus cuniculus} --GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAG VGEFEAGISKNGQTRE-HALLAYT--LGVKQLIVGVNKMDSTEPAYSEKRYDEIVK------EVSAYIKKIGYNPATVPFVPISGWHGDNML-------------
##### No 387 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-179 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-PTVFENYV---A--------------------------------------DIEVD-GKQVELALWDTAGLEDYDR---LRP LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD--------GVREVFEMATRAALQA >5OWV_D:AUTOPDB; Probability=99.2; Identities=18%; Resolution=3.72A; MatchedRegionTemplate=59-272; ATP-binding protein; dynamin, lipid remodelling, membrane tethering; {Campylobacter jejuni} -----DKNVNIAIIGQFSSGKSSLLNLILGRDCLPTGVVPVTFKPTFLRYAKEYFLRVEFEDGSDIITNIEKLAFYTDQRNEVKQAKSLHIFAPIPLLEKITLVDTPGLNANENDTLTTL DELKNIHGAIWLSLIDNAGKKSEE-DAIKANLEL--LGENSICVLNQKDKLSAEELDNVLNYA----------KSVFLK-YFNELIAISCKEAKDEQSYEKSNFQSLLDFLTQ-----
##### No 388 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-179 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-PTVFENYV---A--------------------------------------DIEVD-GKQVELALWDTAGLEDYDR---LRP LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD--------GVREVFEMATRAALQA >5OXF_C:AUTOPDB; Probability=99.2; Identities=18%; Resolution=3.94A; MatchedRegionTemplate=59-272; ATP-binding protein; dynamin, membrane remodelling, membrane fusion; HET: GDP; {Campylobacter jejuni} -----DKNVNIAIIGQFSSGKSSLLNLILGRDCLPTGVVPVTFKPTFLRYAKEYFLRVEFEDGSDIITNIEKLAFYTDQRNEVKQAKSLHIFAPIPLLEKITLVDTPGLNANENDTLTTL DELKNIHGAIWLSLIDNAGKKSEE-DAIKANLEL--LGENSICVLNQKDKLSAEELDNVLNYA----------KSVFLK-YFNELIAISCKEAKDEQSYEKSNFQSLLDFLTQ-----
##### No 389 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=8-127 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYD--------RLRPLSY---PDTDVILMCFSIDSPDSLE-NIPEKWTPEVK HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2XTO_A:AUTOPDB; Probability=99.2; Identities=15%; Resolution=2.8A; MatchedRegionTemplate=22-154; GTPASE IMAP FAMILY MEMBER 2; IMMUNE SYSTEM, G PROTEIN; HET: GDP; {HOMO SAPIENS} -------ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFG EDAMGHTIVLFTHKEDLNGG---------------------------------------------------------
##### No 390 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT--------VFENY-----VADIEV------------------DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2WSM_A:AUTOPDB; Probability=99.2; Identities=17%; Resolution=2.3A; MatchedRegionTemplate=37-223; HYDROGENASE EXPRESSION/FORMATION PROTEIN (HYPB); METAL BINDING PROTEIN; {ARCHAEOGLOBUS FULGIDUS} ----ESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDCDLLLIENVGNLICPV---DFDLGENYRVVMVSV TEGDDVVEK---HPEIF-----RVADLIVINKVALAEAVGA--DVEKMK------AD---AKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN--
##### No 391 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-127 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV--PTV---FE-----------NY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6BK7_B:AUTOPDB; Probability=99.2; Identities=17%; Resolution=1.83A; MatchedRegionTemplate=9-145; Adenosylhomocysteinase (E.C.3.3.1.1, 1.8.1.7); Structural Genomics, Center for Structural; {Enterococcus faecalis (strain ATCC 700802 / V583)} ---SLEKTRNIGIMAHVDAGKTTTTERILYYTGKIHKIGETHEGASQMDWMEQEQERGITITSAATTAQWKGYRVNIIDTPGHVDFTIEVQRSLRVLDGAVTVLDSQSGVEPQT-ETVWR QAT---EYKVPRIVFCNKMDKIGA---------------------------------------------------------
##### No 392 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-126 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN---YVAD--------------IEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5FG3_A:AUTOPDB; Probability=99.2; Identities=21%; Resolution=1.9A; MatchedRegionTemplate=25-159; Probable translation initiation factor IF-2; Translation initiaton factor, GTPase, Ribosomal; HET: GDP; {Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)} ----RLRQPIVVVLGHVDHGKTTLLDKIRRTAVAAKEAGGITQHIGASIVPADVIEKIAEPLKKVIPVKLVIPGLLFIDTPGHELFSNLRRRGGSVADFAILVVDIMEGFKP-QTYEA-L ELLKE--RRVPFLIAANKIDRIP----------------------------------------------------------
##### No 393 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENY-VADIE---------------------VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSL ENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1KJZ_A:AUTOPDB; Probability=99.2; Identities=14%; Resolution=1.85A; MatchedRegionTemplate=11-202; eIF2gamma; initiation of translation, TRANSLATION; {Pyrococcus abyssi} ---SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPR PQTREHL-MALQII-GQKNIIIAQNKIELVDKEKALENYRQIKE------FIEGT--VAENAPIIPISALHGANIDVLVKAIEDF----
##### No 394 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENY-VADIE---------------------VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSL ENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1KK1_A:AUTOPDB; Probability=99.2; Identities=14%; Resolution=1.8A; MatchedRegionTemplate=11-202; eIF2gamma, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER; initiation of translation, TRANSLATION; HET: GNP; {Pyrococcus abyssi} ---SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPR PQTREHL-MALQII-GQKNIIIAQNKIELVDKEKALENYRQIKE------FIEGT--VAENAPIIPISALHGANIDVLVKAIEDF----
##### No 395 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQ-------FPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4AC9_A:AUTOPDB; Probability=99.2; Identities=21%; Resolution=3.03A; MatchedRegionTemplate=14-185; MJ0495-LIKE PROTEIN; SELENOCYSTEINE, TRANSLATION, SECIS ELEMENT, EF-SEC; HET: 5GP, GDP, SO4, CMH, DXC; {METHANOCOCCUS MARIPALUDIS} ---MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITID-IGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTG-EH-MLILDH--FNI PIIVVITKSDNAGTEEIK-RTEMIMK-----SILQSTH-NLKNSSIIPISAKTGFGVDELKNLIITT----
##### No 396 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQ-------FPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4AC9_C:AUTOPDB; Probability=99.2; Identities=21%; Resolution=3.03A; MatchedRegionTemplate=12-183; MJ0495-LIKE PROTEIN; SELENOCYSTEINE, TRANSLATION, SECIS ELEMENT, EF-SEC; HET: 5GP, GDP, SO4, CMH, DXC; {METHANOCOCCUS MARIPALUDIS} ---MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITID-IGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTG-EH-MLILDH--FNI PIIVVITKSDNAGTEEIK-RTEMIMK-----SILQSTH-NLKNSSIIPISAKTGFGVDELKNLIITT----
##### No 397 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQ-------FPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4ACA_B:AUTOPDB; Probability=99.2; Identities=21%; Resolution=3.15A; MatchedRegionTemplate=15-186; TRANSLATION ELONGATION FACTOR SELB; SELENOCYSTEINE, TRANSLATION, SECIS ELEMENT, EF-SEC; HET: 5GP, CMH, SO4, DXC; {METHANOCOCCUS MARIPALUDIS} ---MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITID-IGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTG-EH-MLILDH--FNI PIIVVITKSDNAGTEEIK-RTEMIMK-----SILQSTH-NLKNSSIIPISAKTGFGVDELKNLIITT----
##### No 398 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD---------------RLRPLSY-----PDTDVILMCFSIDSPDSLENIPE KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK-----DGVREVFEMATRAALQA >6YXY_EQ:AUTOPDB; Probability=99.2; Identities=11%; Resolution=3.1A; MatchedRegionTemplate=112-297; bL28m, uL29m, uL30m, bL32m, bL35m; mitoribosome, assembly, LSU, RIBOSOME; HET: ATP, PM8, MG, SPD, NAD, GTP; {Trypanosoma brucei brucei} -----HSFPEVCFIGKPNVGKSSIISCLLRNPRLGRAGRVRGTTRLLQ--FFNVGDALLLVDTPGYGGWKGRHLPQSVAERASAFAILFRYLALRSKGPLKRVYWVMEATKPVQ--PRDE EIFVFLRN--EQIPFSIIISKLDYFGGDGA--ALRRQV------ESIYNFLGT-EDVPVLGVRADSSRPERCINMTALQHDITHYC---
##### No 399 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-172 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT-----------------------------VFE-NYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID SPDS-----LENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI----GAFGYMECSAKTKDGVREVFEMATRAALQA >1SKQ_B:AUTOPDB; Probability=99.2; Identities=13%; Resolution=1.8A; MatchedRegionTemplate=5-205; Elongation factor 1-alpha; Elongation factors, archaea, protein synthesis; HET: GDP; {Sulfolobus solfataricus} ---SQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAK KGEYEAGMSVEGQTREHIILAKT--MGLDQLIVAVNKMDLTEPPYDEKRYKEIV------DQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH------------
##### No 400 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-------FENYVA--DIEVDGKQVELALWDTAGLEDY--------------DRLRPLS-------------YPDTDVIL MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6N0B_C:AUTOPDB; Probability=99.2; Identities=15%; Resolution=1.739A; MatchedRegionTemplate=60-258; Septin-12; cytoskeleton component septin GTPase, STRUCTURAL; HET: GDP; {Homo sapiens} ---DPGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCL YFIAPSGHG-LKPLDIEFMKRL---HEKVNIIPLIAKADTLTPEECQQFKKQ----------IMKEIQEH-KIKIYEFPETDDEEENKLVKKIKDRL---
##### No 401 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-------FENYVA--DIEVDGKQVELALWDTAGLEDY--------------DRLRPLS-------------YPDTDVIL MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6UQQ_A:AUTOPDB; Probability=99.2; Identities=15%; Resolution=2.75A; MatchedRegionTemplate=61-259; Septin-2, Septin-8; cytoskeleton protein, septin, STRUCTURAL PROTEIN; HET: GDP; {Homo sapiens} ---DPGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCL YFIAPSGHG-LKPLDIEFMKRL---HEKVNIIPLIAKADTLTPEECQQFKKQ----------IMKEIQEH-KIKIYEFPETDDEEENKLVKKIKDRL---
##### No 402 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-30 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5CK4_A:AUTOPDB; Probability=99.2; Identities=23%; Resolution=1.89A; MatchedRegionTemplate=63-88; Putative signal recognition particle protein; Arf-like GTPase, protein translocation, signaling; HET: GDP; {Chaetomium thermophilum} ----YTTLPSVLLIGPSGAGKTALLTLFER------------------------------------------------------------------------------------------ ----------------------------------------------------------------
##### No 403 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-128 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGK---------------QVELALWDTAGLE-------DYDRLRPLSYPDTDVILMCFSIDSPDSLEN IPEKWT-----PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5EE0_A:AUTOPDB; Probability=99.2; Identities=19%; Resolution=2.2A; MatchedRegionTemplate=37-188; Small ubiquitin-related modifier,Obg-like ATPase 1; OSYCHF1, GTP-BINDING PROTEIN, AMP-PNP, YCHF-TYPE; {Oryza sativa subsp. japonica} ----FSSHLKIGIVGLPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYVPDERFDWLCQLYKPKSEVSAYLEINDIAGLVRGAHAGEGLGNAFLSHIRAVDGIFHVLRAFEDKEVTH IDDSVDPVRDLETIGEELRLKDIEFVQNKIDDLEKS--------------------------------------------------------
##### No 404 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---------------V-PTVFENYVADIEV---DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK WTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2YWE_A:AUTOPDB; Probability=99.2; Identities=19%; Resolution=2.05A; MatchedRegionTemplate=3-181; GTP-binding protein lepA; G domain, Beta-barrel, Ferredoxin-like domain; {Aquifex aeolicus} ----QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTV-AN FWKAV---EQDLVIIPVINKIDLPSADVD-R-VKKQ----I--EEVLG----LDPEEAILASAKEGIGIEEILEAIVNR----
##### No 405 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---------------V-PTVFENYVADIEV---DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK WTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2YWF_A:AUTOPDB; Probability=99.2; Identities=19%; Resolution=2.24A; MatchedRegionTemplate=3-181; GTP-binding protein lepA; G domain, Beta-barrel, Ferredoxin-like domain; HET: GNP; {Aquifex aeolicus} ----QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTV-AN FWKAV---EQDLVIIPVINKIDLPSADVD-R-VKKQ----I--EEVLG----LDPEEAILASAKEGIGIEEILEAIVNR----
##### No 406 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-175 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV--Y----------------------VPTV-----FEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID SPDS---L---ENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI-----GAFGYMECSAKTKDGVREVFEMATRAALQA >4D61_i:AUTOPDB; Probability=99.2; Identities=14%; Resolution=9.0A; MatchedRegionTemplate=202-403; 40S RIBOSOMAL PROTEIN SA, 40S; CRPV IRES, RIBOSOME, TERMINATION, RELEASE; {ORYCTOLAGUS CUNICULUS} ------EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISAR KGEFETGFEKGGQTRE-HAMLAKT--AGVKHLIVLINKMDDPTVNWSNERYEECKE------KLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD---------
##### No 407 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-128 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGK---------------QVELALWDTAGLE-------DYDRLRPLSYPDTDVILMCFSIDSPDSLEN IPEKWT-----PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5EE3_B:AUTOPDB; Probability=99.2; Identities=19%; Resolution=2.9A; MatchedRegionTemplate=35-186; Small ubiquitin-related modifier,Obg-like ATPase 1; osychf1, GTP-BINDING PROTEIN, ATP, AMP-PNP; HET: ANP, EPE; {Oryza sativa subsp. japonica} ----FSSHLKIGIVGLPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYVPDERFDWLCQLYKPKSEVSAYLEINDIAGLVRGAHAGEGLGNAFLSHIRAVDGIFHVLRAFEDKEVTH IDDSVDPVRDLETIGEELRLKDIEFVQNKIDDLEKS--------------------------------------------------------
##### No 408 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-------P-TVFENY-----VADIEV------------------DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN-RIGAFGYMECSAKTKDGVREVFEMATRAALQA >2WSM_B:AUTOPDB; Probability=99.2; Identities=16%; Resolution=2.3A; MatchedRegionTemplate=34-221; HYDROGENASE EXPRESSION/FORMATION PROTEIN (HYPB); METAL BINDING PROTEIN; {ARCHAEOGLOBUS FULGIDUS} ---RESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDCDLLLIENVGNLICPV---DFDLGENYRVVMVSV TEGDDVVEK---HPEIF-----RVADLIVINKVALAEAVGA--DVEK----------MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN--
##### No 409 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-127 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPD----TDVILMCFSID-SPDSLENIPEKWTPEVKHF----CP NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2GED_A:AUTOPDB; Probability=99.1; Identities=16%; Resolution=2.2A; MatchedRegionTemplate=255-380; Signal recognition particle receptor beta; protein transport, G protein, signal; HET: SO4; {Saccharomyces cerevisiae} -----SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ---EPLSAADY--DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCEN GIDILIACNKSELFTA---------------------------------------------------------
##### No 410 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENY-VADIEV---------------------DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSL ENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1KK3_A:AUTOPDB; Probability=99.1; Identities=14%; Resolution=1.9A; MatchedRegionTemplate=11-202; eIF2gamma, GUANOSINE-5'-DIPHOSPHATE; initiation of translation, TRANSLATION; HET: GDP; {Pyrococcus abyssi} ---SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPR PQTREHL-MALQII-GQKNIIIAQNKIELVDKEKALENYRQIKE------FIEGT--VAENAPIIPISALHGANIDVLVKAIEDF----
##### No 411 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENY-VADIEV---------------------DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSL ENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1S0U_A:AUTOPDB; Probability=99.1; Identities=16%; Resolution=2.4A; MatchedRegionTemplate=36-228; Translation initiation factor 2 gamma; translation initiation, GTPase, EF-1A, tRNA; {Methanocaldococcus jannaschii} --LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQ PQTKEH-LMALEIL-GIDKIIIVQNKIDLVDEKQAEENYEQIKE------FVKGT--IAENAPIIPISAHHEANIDVLLKAIQDF----
##### No 412 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-180 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQF---PEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR-IGAFGYMECSAKTKDGVREVFEMATRAALQA >4ZU9_A:AUTOPDB; Probability=99.1; Identities=16%; Resolution=3.191A; MatchedRegionTemplate=3-168; Elongation factor SelB; Small GTPase, EF-Tu like, TRANSLATION; HET: SO4, GNP, MSE; {Aquifex aeolicus VF5} ------KYILFATAGHVDHGKTTLIKTLTGIDTDRLPEEKKRGLSIDIGFAYIDFPDINTRLEIIDVPGHERFIKNAIAGICSASGLILVVDPNEGIMP-QTIEHL-RVAKSF-GIKHGI AVLTKMDKVDEELAHIAEEE----------LIAFLEKEEMNMEIVKVSAVTGQGIEDLKNSIKKL----
##### No 413 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-127 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPD----TDVILMCFSID-SPDSLENIPEKWTPEVKHF----CP NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2GED_B:AUTOPDB; Probability=99.1; Identities=16%; Resolution=2.2A; MatchedRegionTemplate=257-382; Signal recognition particle receptor beta; protein transport, G protein, signal; HET: SO4; {Saccharomyces cerevisiae} -----SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ---EPLSAADY--DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCEN GIDILIACNKSELFTA---------------------------------------------------------
##### No 414 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-128 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-----EN---YVA--DIEVDGKQVELALWDTAGLEDYDRL--------------RPLSYPD--------------TDV ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5CYO_A:AUTOPDB; Probability=99.1; Identities=19%; Resolution=2.0354A; MatchedRegionTemplate=22-177; Septin-9; septin 9 gtpase domain, HYDROLASE; HET: GDP; {Homo sapiens} ------FEFNIMVVGQSGLGKSTLINTLFKSKISRKSVQPTSEERIPKTIEIKSITHDIEEKGVRMKLTVIDTPGFGDHINNENCWQPIMKFINDQYEKYLQEEVNINRKKRIPDTRVHC CLYFIPATGHSLRPLDI-EFMKRL---SKVVNIVPVIAKADTLTLE--------------------------------------------------------
##### No 415 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-175 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-------------P-----------------TVFENY-VADIEVD----GKQVELALWDTAGLEDYDR---LRPLSYPDTDV ILMCFSIDSPD---SLENIP---EKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTR-RELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4ZKD_A:AUTOPDB; Probability=99.1; Identities=19%; Resolution=2.181A; MatchedRegionTemplate=270-485; Superkiller protein 7 (Ski7); GTPase, translation, NGD, Ski, hydrolase; HET: GDP; {Saccharomyces cerevisiae} ----HPLNLTCLFLGDTNAGKSTLLGHLLYDLNEISMSSMRELQKKSSNLDPSSSNSFKVILDNTKTERENGFSMFKKVIQVENDLLPPSSTLTLIDTPGSIKYFNKETLNSILTFDPEV YVLVIDCNYDSWEKSLDGPNNQIYEILKVISYLNKNSACKKHLIILLNKADLISWDKHRLEMIQSELNYVL--KENFQWT--DAEFQFIPCSGLLGSNLNKTEN---------
##### No 416 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-175 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-------------P-----------------TVFENY-VADIEVD----GKQVELALWDTAGLEDYDR---LRPLSYPDTDV ILMCFSIDSPD---SLENIP---EKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTR-RELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4ZKE_A:AUTOPDB; Probability=99.1; Identities=19%; Resolution=2.251A; MatchedRegionTemplate=269-484; Superkiller protein 7 (Ski7); GTPase, translation, NGD, Ski, hydrolase; HET: PGE, GTP; {Saccharomyces cerevisiae} ----HPLNLTCLFLGDTNAGKSTLLGHLLYDLNEISMSSMRELQKKSSNLDPSSSNSFKVILDNTKTERENGFSMFKKVIQVENDLLPPSSTLTLIDTPGSIKYFNKETLNSILTFDPEV YVLVIDCNYDSWEKSLDGPNNQIYEILKVISYLNKNSACKKHLIILLNKADLISWDKHRLEMIQSELNYVL--KENFQWT--DAEFQFIPCSGLLGSNLNKTEN---------
##### No 417 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-173 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-----------------------------PTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDS PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI--GAFGYMECSAKTKDGVREVFEMATRAALQA >3WY9_B:AUTOPDB; Probability=99.1; Identities=15%; Resolution=2.3A; MatchedRegionTemplate=6-195; Elongation factor 1-alpha, 50S ribosomal; multi-domain, GTPase, aminoacyl-tRNA delivery, GTP; HET: GDP; {Pyrococcus horikoshii OT3} --PKEKPHVNIVFIGHVDHGKSTTIGRLLYDTGNIPETIIKKFEEMGEKGKSFKFAWVMDRLKEERERGITI-DVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATD GVM-PQT-KEHAFLARTL-GIKHIIVTINKMDMVNYDQKV--FEKVK------AQVEKLLKTLGYKDFPVIPTSAWNGDNVVKK-----------
##### No 418 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-175 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFP--EV------------YV----------PT------VFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID SPDS------LENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKP-EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1R5B_A:AUTOPDB; Probability=99.1; Identities=14%; Resolution=2.35A; MatchedRegionTemplate=254-458; Eukaryotic peptide chain release factor; TRANSLATION TERMINATION, PEPTIDE RELEASE, GTPASE; {Schizosaccharomyces pombe} ----GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISAR RGEFEAGFERGGQTREHA-VLART-QGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYN-SKTDVKYMPVSAYTGQNVKDRVD---------
##### No 419 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-126 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-----FENY--------------VADIEV-----DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLE NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5TY0_A:AUTOPDB; Probability=99.1; Identities=16%; Resolution=2.22A; MatchedRegionTemplate=8-150; Adenosylhomocysteinase (E.C.3.3.1.1); Structural Genomics, Center for Structural; HET: BGC; {Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)} ---PLKLYRNIGIAAHVDAGKTTTTERVLYYTGMSHKIGEVHDGAATMDWMVQEQERGITITSAATTCYWSGMDKQFESHRINIIDTPGHVDFMIEVERSLRVLDGAVVVFDSVAGVEPQ S-ETVWRQ-AN--KYGVPRIVFVNKMDRMG----------------------------------------------------------
##### No 420 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-181 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFP--E---------V-----YVPTVFENYVADIEV---DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK WTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3CB4_D:AUTOPDB; Probability=99.1; Identities=20%; Resolution=2.8A; MatchedRegionTemplate=3-180; GTP-binding protein lepA; GTPAse, OB-fold, GTP-binding, Membrane, Nucleotide-binding; {Escherichia coli} ------NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTL-AN CYTAME---MDLEVVPVLNKIDLPAADP-ERVAEE----------IEDIVG-IDATDAVRCSAKTGVGVQDVLERLVRDI---
##### No 421 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-126 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT----------VF-----------ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP EKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3VQT_A:AUTOPDB; Probability=99.1; Identities=16%; Resolution=1.8A; MatchedRegionTemplate=28-166; Peptide chain release factor 3; translation, release factor, GTPase; HET: GDP; {Desulfovibrio vulgaris} ----AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKG--VEAQT RKLMDVCRM--RATPVMTFVNKMDREA----------------------------------------------------------
##### No 422 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-126 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT----------VF-----------ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP EKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3VR1_B:AUTOPDB; Probability=99.1; Identities=16%; Resolution=3.0A; MatchedRegionTemplate=28-166; Peptide chain release factor 3; translation, release factor, GTPase; HET: G4P; {Desulfovibrio vulgaris} ----AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKG--VEAQT RKLMDVCRM--RATPVMTFVNKMDREA----------------------------------------------------------
##### No 423 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-127 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT--------VFE--NYVADIEVDGKQVELALWDTAGLED-------YDRL-------RPLSYP-------------DTDVI LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2QNR_B:AUTOPDB; Probability=99.1; Identities=18%; Resolution=2.6A; MatchedRegionTemplate=49-205; Septin-2; septin, Structural Genomics Consortium, SGC; HET: GDP; {Homo sapiens} ---KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCC FYFISPFGHG-LKPLDVAFMKAI---HNKVNIVPVIAKADTLTL---------------------------------------------------------
##### No 424 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-173 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY------------------------VPTV-----FENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID SPDS---L---ENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI-----GAFGYMECSAKTKDGVREVFEMATRAALQA >4CRN_P:AUTOPDB; Probability=99.1; Identities=13%; Resolution=9.1A; MatchedRegionTemplate=256-457; ERF3 IN RIBOSOME BOUND ERF1-ERF3-GDPNP; TRANSLATION, TERMINATION, CRYO-EM; HET: GNP; {SACCHAROMYCES CEREVISIAE} ----GKDHVSLIFMGHVDAGKSTMGGNLLYLTGSVDKRTIEKYEREAKDAGRQGWYLSWVMDTNKEERNDGKTIEVGKAYFETEKRRYTILDAPGHKMYVSEMIGGASQADVGVLVISAR KGEYETGFERGGQTRE-HALLAKT--QGVNKMVVVVNKMDDPTVNWSKERYDQCV------SNVSNFLRAIGYNIKTDVVFMPVSGYSGANLKDH-----------
##### No 425 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-126 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFP---------------------------EVY----VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI DSPDS------LENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4CXG_A:AUTOPDB; Probability=99.1; Identities=14%; Resolution=8.7A; MatchedRegionTemplate=5-161; ELONGATION FACTOR 1A, 40S RIBOSOMAL; TRANSLATION, MAMMALIAN 80S RIBOSOME, ELONGATION; HET: M2G, OMC, PHE, 5MC, MIA, 7MG, 1MA, 2MG, 5MU, PSU, H2U; {ORYCTOLAGUS CUNICULUS} ---AEKPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERERGITID-LTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSA RKGEFEAGMSTEGQTR-EHLLLARTM-GIEQIIVAVNKMDAPD----------------------------------------------------------
##### No 426 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-175 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQF--PEVYV----------------------PT------VFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID SPDS---L---ENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKP-EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1R5O_A:AUTOPDB; Probability=99.1; Identities=14%; Resolution=3.2A; MatchedRegionTemplate=254-458; Eukaryotic peptide chain release factor; TRANSLATION TERMINATION, PEPTIDE RELEASE, GTPASE; HET: GNP; {Schizosaccharomyces pombe} ----GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISAR RGEFEAGFERGGQTREH-AVLART--QGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNS-KTDVKYMPVSAYTGQNVKDRVD---------
##### No 427 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-126 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY------------------VPT-VFENYVADIE-----VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLE NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6B8D_A:AUTOPDB; Probability=99.1; Identities=15%; Resolution=1.78A; MatchedRegionTemplate=9-151; Adenosylhomocysteinase (E.C.3.3.1.1, 1.8.1.7); Structural Genomics, Center for Structural; {Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)} ---PIERYRNIGISAHIDAGKTTTTERILFYTGVSHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMSQQFPQHRINVIDTPGHVDFTVEVERSMRVLDGAVMVYCAVGGVQPQ -SET-VWRQANK--YEVPRIAFVNKMDRTG----------------------------------------------------------
##### No 428 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-179 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-T----V-----------FENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2XEX_B:AUTOPDB; Probability=99.1; Identities=13%; Resolution=1.9A; MatchedRegionTemplate=6-182; ELONGATION FACTOR G; GTPASE, TRANSLATION, BIOSYNTHETIC PROTEIN; {STAPHYLOCOCCUS AUREUS} --FSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWR Q-ATT--YGVPRIVFVNKMDKLGANFE-YSVSTLH---------DRL-Q--ANAAPIQLPIGAEDEFEAIIDLVEM-----
##### No 429 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-127 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP----------TV-----F-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTP EVKHFCPNVPIILV-GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4H9G_A:AUTOPDB; Probability=99.1; Identities=19%; Resolution=1.93A; MatchedRegionTemplate=7-144; Elongation factor Tu-A (E.C.3.6.5.3); P-loop, GTPase, GTP Binding, tRNA; HET: SO4, GNP; {Thermus thermophilus} --VRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM-PQTRE-HIL LARQ--VGVPYIVVFMNKVDMVDD---------------------------------------------------------
##### No 430 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-127 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP---------TVFEN-YVADIEVDGKQVELALWDTAGLED-------YDRL-------RPLSYP-------------DTDVI LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2QNR_A:AUTOPDB; Probability=99.1; Identities=20%; Resolution=2.6A; MatchedRegionTemplate=50-206; Septin-2; septin, Structural Genomics Consortium, SGC; HET: MSE, GDP; {Homo sapiens} ---KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCC FYFISPFGHG-LKPLDVAFMKAI---HNKVNIVPVIAKADTLTL---------------------------------------------------------
##### No 431 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=3-127 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP---------------TVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTP EVKHFCPNVPIILV-GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2C78_A:AUTOPDB; Probability=99.1; Identities=19%; Resolution=1.4A; MatchedRegionTemplate=14-151; ELONGATION FACTOR TU-A (E.C.3.1.5.1); HYDROLASE, GTPASE, TRANSLATION ELONGATION FACTOR; HET: GNP, PUL; {THERMUS THERMOPHILUS} --VRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM-PQTRE-HIL LARQ--VGVPYIVVFMNKVDMVDD---------------------------------------------------------
##### No 432 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-128 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFP-EVYVPTV-------FENY--VADIEVDGKQVELALWDTAGLEDY-------DRL-------RPLSYP-------------DTDVI LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6UPQ_A:AUTOPDB; Probability=99.1; Identities=19%; Resolution=1.86A; MatchedRegionTemplate=37-191; Septin-2, Septin-11; cytoskeleton protein, septin, STRUCTURAL PROTEIN; HET: GTP, GDP; {Homo sapiens} ------FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCC FYFISPFGHG-LKPLDVAFMKAI---HNKVNIVPVIAKADTLTLK--------------------------------------------------------
##### No 433 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-127 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSY---------PDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-- -CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1H65_A:AUTOPDB; Probability=99.1; Identities=12%; Resolution=2.0A; MatchedRegionTemplate=44-176; CHLOROPLAST OUTER ENVELOPE PROTEIN OEP34; GTPASE, CHLOROPLAST, TRANSLOCON; HET: GDP; {PISUM SATIVUM} -----VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLD-KLVAKAITDSFG KGIWNKAIVALTHAQFSPP---------------------------------------------------------
##### No 434 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-31 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5CK3_B:AUTOPDB; Probability=99.1; Identities=21%; Resolution=3.2A; MatchedRegionTemplate=56-83; SRX domain, Putative signal recognition; GTPase, Longin domain, regulator complex; HET: GOL, GTP; {Chaetomium thermophilum} ---QYTTLPSVLLIGPSGAGKTALLTLFERG----------------------------------------------------------------------------------------- ----------------------------------------------------------------
##### No 435 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-126 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV----------------F-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6NOT_B:AUTOPDB; Probability=99.1; Identities=17%; Resolution=2.4A; MatchedRegionTemplate=13-147; Elongation factor G; National Institute of Allergy and; {Rickettsia prowazekii (strain Madrid E)} ----LEQIRNIGICAHIDAGKTTTTERILYYTGKSHKIGEVHEGGATMDWMEQEQERGITITSAATTCRWQDKVINIIDTPGHVDFTIEVERSLRVLDGAVAVFDGVAGVEP-QS-ETVW RQADK--YNVPRMCFVNKMDRMG----------------------------------------------------------
##### No 436 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=57-127 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED-------------YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4H1V_A:AUTOPDB; Probability=99.1; Identities=20%; Resolution=2.3A; MatchedRegionTemplate=141-222; Dynamin-1-like protein (E.C.3.6.5.5); GTPase domain, GTPase, Cytosol, HYDROLASE; HET: GNP; {Homo sapiens} --------------------------------------------------------NLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKISREVD --PDGRRTLAVITKLDLMDA---------------------------------------------------------
##### No 437 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-173 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-------------YVPTV-----------------FENY-VADIEVD----GKQVELALWDTAGLEDYD---RLRPLSYPDTDV ILMCFSIDSP---DSLENIP---EKWTPEVKH----FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD-MANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5G06_P:AUTOPDB; Probability=99.1; Identities=20%; Resolution=4.2A; MatchedRegionTemplate=265-477; EXOSOME COMPLEX COMPONENT RRP45, EXOSOME; HYDROLASE, RNA DECAY, EXOSOME, RNA; {SACCHAROMYCES CEREVISIAE} -----PLNLTCLFLGDTNAGKSTLLGHLLYDLNEISMSSMRELQKKSSNLDPSSSNSFKVILDNTKTERENGFSMFKKVIQVENDLLPPSSTLTLIDTPGSIKYFNKETLNSILTFDPEV YVLVIDCNYDSWEKSLDGPNNQIYEILKVISYLNKNSACKKHLIILLNKADLISWDKH--RLEMIQSE-LN-YVLKENFQWTDAEFQFIPCSGLLGSNLNKT-----------
##### No 438 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=8-127 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-----TVFENY------------VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3J25_A:AUTOPDB; Probability=99.1; Identities=15%; Resolution=7.2A; MatchedRegionTemplate=3-135; Tetracycline resistance protein tetM; antibiotic resistance, TRANSLATION; HET: GCP; {Enterococcus faecalis} -------IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGV-QAQTRI-LF HALRK--MGIPTIFFINKIDQNGI---------------------------------------------------------
##### No 439 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-126 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV------------------------P-----TVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID SPD---SLE---NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3MCA_A:AUTOPDB; Probability=99.1; Identities=15%; Resolution=2.74A; MatchedRegionTemplate=329-483; Elongation factor 1 alpha-like protein; protein protein complex, Translation regulation; {Schizosaccharomyces pombe} -----KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSS QNNFERGFLENGQTREHA-YLLRAL-GISEIVVSVNKLDLMS----------------------------------------------------------
##### No 440 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-127 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSY---------PDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-- -CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1H65_B:AUTOPDB; Probability=99.1; Identities=12%; Resolution=2.0A; MatchedRegionTemplate=43-175; CHLOROPLAST OUTER ENVELOPE PROTEIN OEP34; GTPASE, CHLOROPLAST, TRANSLOCON; HET: MSE, GDP; {PISUM SATIVUM} -----VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLD-KLVAKAITDSFG KGIWNKAIVALTHAQFSPP---------------------------------------------------------
##### No 441 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-126 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV----------------F-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6NOT_A:AUTOPDB; Probability=99.1; Identities=17%; Resolution=2.4A; MatchedRegionTemplate=19-153; Elongation factor G; National Institute of Allergy and; {Rickettsia prowazekii (strain Madrid E)} ----LEQIRNIGICAHIDAGKTTTTERILYYTGKSHKIGEVHEGGATMDWMEQEQERGITITSAATTCRWQDKVINIIDTPGHVDFTIEVERSLRVLDGAVAVFDGVAGVEP-QS-ETVW RQADK--YNVPRMCFVNKMDRMG----------------------------------------------------------
##### No 442 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-127 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPE----------------VYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTP EVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1XB2_A:AUTOPDB; Probability=99.1; Identities=17%; Resolution=2.2A; MatchedRegionTemplate=65-200; Mitochondrial Elongation factors Tu and; Protein-protein complex, TRANSLATION; {Bos taurus} ---RDKPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITIN-AAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPM-PQT-REHLL LARQ--IGVEHVVVYVNKADAVQD---------------------------------------------------------
##### No 443 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=55-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL------RPLSYPD--TDVILMCFSIDSPDSLENIPEKWTPEVKHF-CP NVPIILVGNKKDLRNDEHTRRELAKM---KQEP----------VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5HCI_E:AUTOPDB; Probability=99.0; Identities=14%; Resolution=2.3A; MatchedRegionTemplate=99-248; GPN-loop GTPase 1 (E.C.3.6.5.-); GPN-loop GTPase, Chaperone, Assembly, RNA; HET: GDP, GOL; {Saccharomyces cerevisiae} ------------------------------------------------------KFQNCIIDTPGQIECFVWSASGAIITESFASSFPTVIAYIVDTPRNSSPTTFMSNMLYACSILYKT KLPMIVVFNKTDVCKADFAKEWMTDFESFQAAIKEDQDGYMSSLVNSMSLMLEEFYSQLDVVGVSSFTGDGFDEFMQCVDKKVD--
##### No 444 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=55-182 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL------RPLSYPD--TDVILMCFSIDSPDSLENIPEKWTPEVKHF-CP NVPIILVGNKKDLRNDEHTRRELAKM---KQEP----------VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5HCN_A:AUTOPDB; Probability=99.0; Identities=14%; Resolution=2.2A; MatchedRegionTemplate=99-248; GPN-loop GTPase 1 (E.C.3.6.5.-); GPN-loop GTPase, Chaperone, Assembly, RNA; HET: DAO, GCP, GOL; {Saccharomyces cerevisiae} ------------------------------------------------------KFQNCIIDTPGQIECFVWSASGAIITESFASSFPTVIAYIVDTPRNSSPTTFMSNMLYACSILYKT KLPMIVVFNKTDVCKADFAKEWMTDFESFQAAIKEDQDGYMSSLVNSMSLMLEEFYSQLDVVGVSSFTGDGFDEFMQCVDKKVD--
##### No 445 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-179 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFP-------EVYVPTVFENY-VADIEV-----------------------DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK----------DGVREVFEMATRAALQA >5IZM_A:AUTOPDB; Probability=99.0; Identities=17%; Resolution=3.4A; MatchedRegionTemplate=25-233; Selenocysteine-specific elongation factor; elongation factor, selenocysteine, selenocysteine tRNA; HET: MSE, GNP; {Homo sapiens} ---GRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDV TKGMQTQSA-ECLVI-GQ--IACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKT--LEN--TKFRGAPIIPVAAKPGGPEAPETEAPQGIPELIELLTS-----
##### No 446 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=7-127 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPE----------------VYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTP EVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >1D2E_D:AUTOPDB; Probability=99.0; Identities=16%; Resolution=1.94A; MatchedRegionTemplate=56-188; ELONGATION FACTOR TU (EF-TU); G-PROTEIN, BETA-BARREL, RNA BINDING PROTEIN; HET: GDP; {Bos taurus} ------PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGI-TINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGP-MPQT-REHLL LARQ--IGVEHVVVYVNKADAVQD---------------------------------------------------------
##### No 447 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-126 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP--------------------TV---FENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLE NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >5TV2_A:AUTOPDB; Probability=99.0; Identities=17%; Resolution=1.6A; MatchedRegionTemplate=6-148; Ornithine aminotransferase, mitochondrial (E.C.2.6.1.13); GTP-binding domain, domain II, Structural; {Vibrio vulnificus} ---PIERYRNIGICAHVDAGKTTTTERILFYTGLSHKIGEVHDGAATMDWMEQEQERGITITSAATTTFWRGMEAQFQDHRVNIIDTPGHVDFTIEVERSLRVLDGAVVVFCGSSGVEP- QSETVW-RQAD--KYHVPRMVFVNKMDRAG----------------------------------------------------------
##### No 448 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-126 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-T---V----------FEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE VKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >4ZCI_A:AUTOPDB; Probability=99.0; Identities=15%; Resolution=2.627A; MatchedRegionTemplate=37-168; GTP-binding protein TypA/BipA; BipA, GTPase, Nucleotide, GTP-BINDING PROTEIN; HET: NCO; {Escherichia coli (strain K12)} -----EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKA FA---YGLKPIVVINKVDRPG----------------------------------------------------------
##### No 449 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-127 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYP---------DTDVILMCFSIDSPDSLENIPEKWTPEVKHF-- CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2J3E_A:AUTOPDB; Probability=99.0; Identities=15%; Resolution=3.2A; MatchedRegionTemplate=34-166; T7I23.11 PROTEIN; ATTOC33(R130A), DIMERIZATION, GTPASE, PROTEIN TRANSPORT; HET: GDP; {ARABIDOPSIS THALIANA} -----MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGK EIWCKTLLVLTHAQFSPP---------------------------------------------------------
##### No 450 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-173 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP------------TVFENY--------------------VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFS IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI----GAFGYMECSAKTKDGVREVFEMATRAALQA >1ZUN_B:AUTOPDB; Probability=99.0; Identities=17%; Resolution=2.7A; MatchedRegionTemplate=36-229; Sulfate adenylyltransferase subunit 2 (E.C.2.7.7.4); beta barrel, switch domain, heterodimer; HET: GDP, AGS; {Pseudomonas syringae} ----RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVD ARYGVQTQ-T-RRHSYIASL-LGIKHIVVAINKMDLNGFDERV--FESIK------ADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK-----------
##### No 451 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=4-179 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFP-------EVYVPTVFENY-VADIEV-----------------------DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK----------DGVREVFEMATRAALQA >5IZL_A:AUTOPDB; Probability=99.0; Identities=17%; Resolution=2.72A; MatchedRegionTemplate=24-232; Selenocysteine-specific elongation factor; elongation factor, selenocysteine, selenocysteine tRNA; HET: GCP; {Homo sapiens} ---GRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDV TKGMQTQSA-ECLVI-GQ--IACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQK--TLEN--TKFRGAPIIPVAAKPGGPEAPETEAPQGIPELIELLTS-----
##### No 452 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-173 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPE-------------------------------VYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI DSPDSLEN------IPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3P26_A:AUTOPDB; Probability=99.0; Identities=14%; Resolution=2.5A; MatchedRegionTemplate=168-366; Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational; {Saccharomyces cerevisiae} ----ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVS-ICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDC STN-AFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWSQQ--RFEEIKSKL-L-PYLVDIGFFEDNINWVPISGFSGEGVYKI-----------
##### No 453 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=6-127 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSY---------PDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-- CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3DEF_A:AUTOPDB; Probability=99.0; Identities=15%; Resolution=1.96A; MatchedRegionTemplate=39-171; T7I23.11 protein (E.C.3.6.5.2); chloroplast, Toc33, GTPase, HYDROLASE; HET: GDP; {Arabidopsis thaliana} -----MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGK EIWCKTLLVLTHAQFSPP---------------------------------------------------------
##### No 454 #####
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Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=57-127 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED-------------YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >3T34_B:AUTOPDB; Probability=99.0; Identities=22%; Resolution=2.405A; MatchedRegionTemplate=137-218; Dynamin-related protein 1A, LINKER, Dynamin-related; dynamin-like protein 1A, GTPase, membrane; HET: GDP, ALF; {Arabidopsis thaliana, synthetic, Arabidopsis thaliana} --------------------------------------------------------NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVD --PSGDRTFGVLTKIDLMDK---------------------------------------------------------
##### No 455 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-179 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-------V--ADIEVDGKQVELALWDTAGLEDYDR--------------LRPLSY-------------PDTDVIL MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2QAG_C:AUTOPDB; Probability=99.0; Identities=15%; Resolution=4.0A; MatchedRegionTemplate=42-237; Septin-2, Septin-6, Septin-7; Cell cycle, Cell division, GTP-binding; HET: GDP, GTP; {Homo sapiens} ----RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCL YFIAPSGHG-LKPLDIEFMKRL---HEKVNIIPLIAKADTLTPEECQQFKKQ----------IMKEIQEH-KIKIYEFPETDDEEENKLVKKIKD-----
##### No 456 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-92 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-TVFENYVADIEVDGKQ---------------VELALWDTAGLE-------DYDRLRPLSYPDTDVILMCFSIDSPDSLEN IPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >2OHF_A:AUTOPDB; Probability=99.0; Identities=19%; Resolution=2.7A; MatchedRegionTemplate=34-144; GTP-binding protein 9; ATPase GTPase P-loop; HET: ACP; {Homo sapiens} ----FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED----- ---------------------------------------------------------------------------------------
##### No 457 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-128 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-------N--YVADIEVDGKQVELALWDTAGLEDYDR--------------LRPLSYPDT--------------DVI LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6MQ9_A:AUTOPDB; Probability=99.0; Identities=16%; Resolution=1.86A; MatchedRegionTemplate=68-224; Septin-12; cytoskeleton component septin GTPase spermatogenesis; HET: GNP; {Homo sapiens} ----MGFEFNIMVVGQSGLGKSTMVNTLFKSKVWKSNPPGLGVPTPQTLQLHSLTHVIEEKGVKLKLTVTDTPGFGDQINNDNCWDPILGYINEQYEQYLQEEILITRQRHIPDTRVHCC VYFVPPTGHCLRPLDI-EFLQRL---CRTVNVVPVIARADSLTME--------------------------------------------------------
##### No 458 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
Copy & paste the pair ali below into InterEvDock2 (back to form and paste in the Advanced mode 'Protein x sequence template alignment' box) >sequence1; MatchedRegionQuery=5-128 GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-------N--YVADIEVDGKQVELALWDTAGLEDYDR--------------LRPLSYPDT--------------DVI LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA >6MQB_A:AUTOPDB; Probability=99.0; Identities=16%; Resolution=2.12A; MatchedRegionTemplate=68-224; Septin-12; cytoskeleton component septin GTPase spermatogenesis; HET: GNP; {Homo sapiens} ----MGFEFNIMVVGQSGLGKSTMVNTLFKSKVWKSNPPGLGVPTPQTLQLHSLTHVIEEKGVKLKLTVTDTPGFGDQINNDNCWDPILGYINEQYEQYLQEEILITRQRHIPDTRVHCC VYFVPPTGHCLRPLDI-EFLQRL---CRTVNVVPVIARADSLTME--------------------------------------------------------

############## END OF PAIRWISE ALI SECTION ##############



####### START OF PROFILES PAIR ALIGNMENTS SECTION #######



##### No 1 #####
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Move to pairwise alignment
View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5JCP_A Arf-GAP with Rho-GAP domain, ANK; RhoA, RhoGAP, ARAP3, SIGNALING PROTEIN; HET: GDP, ALF; 2.1A {Homo sapiens} Probab=99.80 E-value=8.3e-24 Score=159.90 Aligned_cols=179 Identities=98% Similarity=1.512 Sum_probs=117.7 Template_Neff=10.800 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) .....+|+++|..++|||||++++..........++........+...+....+.+||+||++.+...+..++..+|+++ T Consensus 240 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~pG~~~~~~~~~~~~~~~d~~i 319 (419) T 5JCP_A 240 AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 319 (419) T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHC--------------CEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE T ss_pred cccccEEEEEcCCCCCHHHHHHHHhCCCCCCCCCCCCCceeEEEEEECCEEEEEEEEeCCCCHHHHHhhHHHhcCCCEEE Confidence 45667999999999999999999987765443333322222333344445678899999999888888888889999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) +|+|+++..++......+...+.......|+++|+||+|+.........................++...+...++++|+ T Consensus 320 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 399 (419) T 5JCP_A 320 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 399 (419) T ss_dssp EEEETTCHHHHHHCCCCCHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCT T ss_pred EEEeCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccccCCcccHHHHHHHHhcccCHHHHHHHHHHhCCCCEEEeec Confidence 99999988777766556666554443578999999999998743322211111111111122222333333367899999 Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184) .++.|+.++|+++.+.+++ T Consensus 400 ~~~~~i~~~~~~l~~~~~~ 418 (419) T 5JCP_A 400 KTKDGVREVFEMATRAALQ 418 (419) T ss_dssp TTCTTHHHHHHHHHHHHHC T ss_pred ccCCCHHHHHHHHHHHHHh Confidence 9999999999999888765
##### No 2 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6V6U_A Transforming protein RhoA (E.C.3.6.5.2); GTPase, Switch I, Switch II; HET: DIO, GDP; 1.16A {Homo sapiens} Probab=99.89 E-value=1.1e-27 Score=161.38 Aligned_cols=182 Identities=97% Similarity=1.482 Sum_probs=129.6 Template_Neff=11.400 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) |.+.++++|+++|.+++|||||++++..........++....+...+..++..+.+.+||++|++.+...+..++.++|+ T Consensus 2 ~~~~~~~~i~~~G~~~~GKstl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 81 (183) T 6V6U_A 2 SMAAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 81 (183) T ss_dssp ---CEEEEEEEEESTTSSHHHHHHTSCSSCCTTCCCSSCCSCEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSE T ss_pred CccceeeEEEEEcCCCCCcHHHHHHhccCCCCcccCCCcceeeEEEEEECCEEEEEEEEcCCCCcchhhhhhhhCCCCCE Confidence 45678899999999999999999988877665444443333333334444556788999999998888788888899999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++|+++++..++....+.+...+....+..|+++++||+|+...........+.............++.......++.+ T Consensus 82 ii~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (183) T 6V6U_A 82 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 161 (183) T ss_dssp EEEEEETTCHHHHHHCCCCCHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC T ss_pred EEEEeeCCChHHhhhhHHhchHHHHHHCCCCCEEEEEechhcCCCHHhHHHHHhccCCCCCHHHHHHHHHHhCCcEEEEc Confidence 99999999887777766666666655445789999999999987543333222222212222223333444444678899 Q sequence1 163 SAKTKDGVREVFEMATRAALQA 184 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~~ 184 (184) |++++.|+.++|+++.+.++++ T Consensus 162 s~~~~~~i~~~~~~l~~~~~~~ 183 (183) T 6V6U_A 162 SAKTKDGVREVFEMATRAALQA 183 (183) T ss_dssp CTTTCTTHHHHHHHHHHHHHHC T ss_pred CCCCcccHHHHHHHHHHHHhhC Confidence 9999999999999999988764
##### No 3 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3LW8_A Transforming protein RhoA, IpgB2; IpgB2, RhoA, GTPase, GEF, GEF-GTPase-complex; HET: GDP; 1.85A {Homo sapiens} Probab=99.89 E-value=7.7e-28 Score=161.80 Aligned_cols=183 Identities=96% Similarity=1.463 Sum_probs=130.1 Template_Neff=12.000 Q sequence1 2 AMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) .+.+++..+|+++|.+|+|||||++++..........++....+......++..+.+.+||++|++.+...+..++..++ T Consensus 3 ~~~~~~~~~i~i~G~~~~GKst~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 82 (185) T 3LW8_A 3 LGSAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD 82 (185) T ss_dssp CGGGSCEEEEEEEESTTSSHHHHHHHHHHSSCCCSCCCSCCCCEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCC T ss_pred CCccceeeEEEEEcCCCCChHHHHHHHccCCCCcccCCCceeeeEEEEEECCEEEEEEEEeCCCCcchhhhhhhcCCCCC Confidence 35677889999999999999999999987665444333333333334444455678999999999888878888888999 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184) ++++|+|+++..++....+.+...+.......|+++++||+|+...........+.............++.....+.+++ T Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (185) T 3LW8_A 83 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 162 (185) T ss_dssp EEEEEEETTCHHHHHHCCCCCHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE T ss_pred EEEEEeeCCChHHHhchhHhcHHHHHHHCCCCCEEEEEechhcCCCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcEEEE Confidence 99999999987777766566666555444578999999999998754332222222221112222223333334467889 Q sequence1 162 CSAKTKDGVREVFEMATRAALQA 184 (184) Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~~~ 184 (184) +|++++.|+.++|+++.+.++++ T Consensus 163 ~Sa~~~~~i~~~~~~l~~~~~~~ 185 (185) T 3LW8_A 163 CSAKTKDGVREVFEMATRAALQA 185 (185) T ss_dssp CBTTTTBSHHHHHHHHHHHHHTC T ss_pred CCCCCcccHHHHHHHHHHHHhhC Confidence 99999999999999999988764
##### No 4 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4MIT_A Rho family GTPase (E.C.3.6.5.2), Serine/threonine; G domain, p21 binding domain; HET: MG, GTP; 2.35A {Entamoeba histolytica} Probab=99.87 E-value=1.1e-26 Score=157.04 Aligned_cols=180 Identities=51% Similarity=0.906 Sum_probs=122.6 Template_Neff=11.200 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ...+.++|+++|.+++|||||++++....+...+.++....+......++..+.+.+||++|++.+...+..++..++++ T Consensus 6 ~~~~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 85 (186) T 4MIT_A 6 EKPTSIKLVVVGDGAVGKTCLLISYSIRKFPEDYIPTVFDNYVVSLTAGTRQIQLALWDTAGLEEYDQLRPLSYSSASIF 85 (186) T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE T ss_pred cCCeeeEEEEECCCCCChHHHHHHHHcCCCCccccCCcccceEEEeeeCCEEEEEEEEeCCCCcchhhhhhhccCCCcEE Confidence 35678999999999999999999998876655444443333333333334457889999999988887787788889999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|+|+++..++......|...+.......|+++++||.|+...........+.....+.......++.......++.+| T Consensus 86 ilv~d~~~~~~~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 165 (186) T 4MIT_A 86 LICFSVTSSVSYDNVITKWHPEVIHFAPKVPIILVGTKLDTRNDPAIVKRLTEQGMTVINTAKGEELKNRIKAVKYIECS 165 (186) T ss_dssp EEEEETTCHHHHHHCCCCCHHHHHHHCTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC T ss_pred EEEEECCChhHHHHHHHhhHHHHHHHCCCCCEEEEecccccCCCHHHHHHHHHcCCceecHHHHHHHHHHhCCcEEEEcc Confidence 99999998776665544555444333346899999999999764322221111111111222222233333335788999 Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184) ++++.|+.++|.++.+.+++ T Consensus 166 a~~~~~i~~~~~~i~~~~~~ 185 (186) T 4MIT_A 166 AKTSENLKTVFDEAVKTVLM 185 (186) T ss_dssp TTTCTTHHHHHHHHHHHHHC T ss_pred CCCChhHHHHHHHHHHHHhc Confidence 99999999999999888765
##### No 5 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4MIT_D Rho family GTPase (E.C.3.6.5.2), Serine/threonine; G domain, p21 binding domain; HET: GTP, MG; 2.35A {Entamoeba histolytica} Probab=99.87 E-value=1.1e-26 Score=157.04 Aligned_cols=180 Identities=51% Similarity=0.906 Sum_probs=123.5 Template_Neff=11.200 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ...+.++|+++|.+++|||||++++....+...+.++....+......++..+.+.+||++|++.+...+..++..++++ T Consensus 6 ~~~~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 85 (186) T 4MIT_D 6 EKPTSIKLVVVGDGAVGKTCLLISYSIRKFPEDYIPTVFDNYVVSLTAGTRQIQLALWDTAGLEEYDQLRPLSYSSASIF 85 (186) T ss_dssp CCCEEEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE T ss_pred cCCeeeEEEEECCCCCChHHHHHHHHcCCCCccccCCcccceEEEeeeCCEEEEEEEEeCCCCcchhhhhhhccCCCcEE Confidence 35678999999999999999999998876655444443333333333334457889999999988887787788889999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|+|+++..++......|...+.......|+++++||.|+...........+.....+.......++.......++.+| T Consensus 86 ilv~d~~~~~~~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 165 (186) T 4MIT_D 86 LICFSVTSSVSYDNVITKWHPEVIHFAPKVPIILVGTKLDTRNDPAIVKRLTEQGMTVINTAKGEELKNRIKAVKYIECS 165 (186) T ss_dssp EEEEETTCHHHHHHCCCCCHHHHHHHCTTSCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC T ss_pred EEEEECCChhHHHHHHHhhHHHHHHHCCCCCEEEEecccccCCCHHHHHHHHHcCCceecHHHHHHHHHHhCCcEEEEcc Confidence 99999998776665544555444333346899999999999764322221111111111222222233333335788999 Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184) ++++.|+.++|.++.+.+++ T Consensus 166 a~~~~~i~~~~~~i~~~~~~ 185 (186) T 4MIT_D 166 AKTSENLKTVFDEAVKTVLM 185 (186) T ss_dssp TTTCTTHHHHHHHHHHHHHH T ss_pred CCCChhHHHHHHHHHHHHhc Confidence 99999999999999888765
##### No 6 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3SEA_A GTP-binding protein Rheb; globular, Hydrolase; HET: GDP, GNP; 2.0A {Homo sapiens} Probab=99.85 E-value=7.4e-26 Score=150.77 Aligned_cols=164 Identities=29% Similarity=0.398 Sum_probs=111.9 Template_Neff=10.900 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) .+..+|+++|.+++||||+++++....+.....++....+......++..+.+.+||++|++.+...+..+...++++++ T Consensus 2 ~~~~~i~i~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 81 (167) T 3SEA_A 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 81 (167) T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCTTSCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCSSCCTTCCEEEE T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCccccCCCcccceEEEEEECCEEEEEEEEeCCCCccccccchHhcCCCCEEEE Confidence 35689999999999999999998876554333333222222223333445788999999998777767777778899999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) |+++.+..++......+....... ....|+++++||.|+...... ...+...++...+ ..++++|+ T Consensus 82 v~~~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~~K~D~~~~~~~------------~~~~~~~~~~~~~-~~~~e~S~ 148 (167) T 3SEA_A 82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVI------------SYEEGKALAESWN-AAFLESSA 148 (167) T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECTTCGGGCCS------------CHHHHHHHHHHTT-CEEEECCT T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcccCcCccC------------CHHHHHHHHHHhC-CcEEEEec Confidence 999998776655433333322211 236889999999998763211 1122222333333 47899999 Q sequence1 165 KTKDGVREVFEMATRAAL 182 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~~ 182 (184) .++.++.++|.+++.... T Consensus 149 ~~~~~~~~~f~~~~~~~~ 166 (167) T 3SEA_A 149 KENQTAVDVFRRIILEAE 166 (167) T ss_dssp TCHHHHHHHHHHHHHHHT T ss_pred CCCccHHHHHHHHHHHHh Confidence 999999999998877654
##### No 7 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6BCB_F Transforming protein RhoA, Rho guanine; Rho GTPase Guanine Nucleotide Exchange; HET: GSP, EDO; 1.401A {Homo sapiens} Probab=99.85 E-value=1.1e-25 Score=151.53 Aligned_cols=181 Identities=97% Similarity=1.480 Sum_probs=127.3 Template_Neff=11.900 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ......+|+++|.+++|||||++++....+.....++....+......++....+.+||++|++.+...+..++..++++ T Consensus 5 ~~~~~~~i~l~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 84 (185) T 6BCB_F 5 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 84 (185) T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGTCTTCSEE T ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCcccCCCcceeeEEEEEECCEEEEEEEEeCCCchhHHhhhhhcCCCCCEE Confidence 45678999999999999999999998766544433333223333334444456789999999887777788888899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|+++++..++....+.+...+.......|+++++||.|+.........+.+.............++.......++.+| T Consensus 85 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (185) T 6BCB_F 85 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 164 (185) T ss_dssp EEEEETTCHHHHHHCCCCCHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC T ss_pred EEEeeCCChHHhhcchHhhHHHHHHHCCCCCEEEEEecccccCCHHHHHHHHhccCCCCCHHHHHHHHHHhCCcEEEEcC Confidence 99999998777776655666655544457899999999999875433333322222222222222333333446788999 Q sequence1 164 AKTKDGVREVFEMATRAALQA 184 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~~ 184 (184) ++++.|+.++|+++.+.++++ T Consensus 165 a~~~~~i~~~~~~~~~~~~~~ 185 (185) T 6BCB_F 165 AKTKDGVREVFEMATRAALQA 185 (185) T ss_dssp TTTCTTHHHHHHHHHHHHHCC T ss_pred CCCCccHHHHHHHHHHHHhhC Confidence 999999999999999988764
##### No 8 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6JMG_A DnaJ homolog subfamily C member; small GTPase, HYDROLASE; HET: GTP; 2.701A {Xenopus laevis} Probab=99.85 E-value=1.1e-25 Score=161.81 Aligned_cols=165 Identities=21% Similarity=0.426 Sum_probs=115.8 Template_Neff=10.600 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ....++|+++|.+++|||||++++....+.....++....+. ..+..++..+.+.+||++|++.+...+..++..++++ T Consensus 13 ~~~~~ki~iiG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 92 (281) T 6JMG_A 13 KALRIKVISMGNAEVGKSCIIKRYCEKRFVPKYQATIGIDYGVTKVHIKDREIKVNIFDMAGHPFFYEVRNEFYKDTQGV 92 (281) T ss_dssp -CEEEEEEEECCTTSSHHHHHHHHHHCCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE T ss_pred ccceEEEEEECCCCCCHHHHHHHHhcCCCCcccCCceEEEEEEEEEEECCEEEEEEEEeCCCChhhHHHHHHHccCCcEE Confidence 456789999999999999999999977665444443333322 2233445567899999999999988898899999999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFG 158 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184) ++|+|++++.++.....++..+.... ....|+++|+||+|+....... ......++...+ .. T Consensus 93 ilV~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~------------~~~~~~~~~~~~-~~ 159 (281) T 6JMG_A 93 ILVYDVGHKETFESLDGWLAEMKQELGPQGNIDNIVFAVCANKIDSTKHRSVD------------ESEGRLWSESKG-FL 159 (281) T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTTTTCCGGGSEEEEEEECTTCCSCCCSC------------HHHHHHHHHTTT-CE T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHCCCCCccccEEEEEeeCccCCcCCCCC------------HHHHHHHHHHhC-Ce Confidence 99999999877776643333332221 1257899999999987532110 011111122222 57 Q sequence1 159 YMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 159 ~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ++++|++++.|+.++|.++...+. T Consensus 160 ~~~~Sa~~~~~i~~~f~~l~~~~~ 183 (281) T 6JMG_A 160 YFETSAQSGEGINEMFQAFYSAIV 183 (281) T ss_dssp EEEECTTTCTTHHHHHHHHHHHHH T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH Confidence 899999999999999998887654
##### No 9 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2CLS_A RHO-RELATED GTP-BINDING PROTEIN RHO6; NUCLEOTIDE-BINDING, GTP-BINDING PROTEIN RHO6, MEMBRANE; HET: GTP; 2.31A {HOMO SAPIENS} Probab=99.83 E-value=3.8e-25 Score=150.80 Aligned_cols=181 Identities=44% Similarity=0.795 Sum_probs=122.3 Template_Neff=11.500 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) +......+|+++|..++|||+|++++....+.....++....+......++....+.+||++|.+.+...+..++..+++ T Consensus 6 ~~~~~~~~i~~~G~~~~GKs~li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 85 (198) T 2CLS_A 6 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 85 (198) T ss_dssp --CEEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEECSSCEEEEEEEEECCCGGGTTTGGGGGTTCSE T ss_pred CCCcceeEEEEECCCCCCHHHHHHHHhhCCCCCccCCcceEEEEEEeeeCCcEEEEEEEeCCCCcccccchHhhcCCCCE Confidence 34567789999999999999999999876655433333333333233344456788999999998888778888889999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++|+|+.+..++......|...+....+..|+++++||.|+.........................++...+...++++ T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~v~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (198) T 2CLS_A 86 VLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEG 165 (198) T ss_dssp EEEEEETTCTTTTTTHHHHHHHHHHHHCTTSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEEC T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEecHHhccCHHHHHHHhhccCCCCCHHHHHHHHHHhCCCEEEEe Confidence 99999999877776644455555544335789999999999876432111111111111222333344444443458899 Q sequence1 163 SAKTKD-GVREVFEMATRAALQ 183 (184) Q Consensus 163 s~~~~~-~i~~~~~~~~~~~~~ 183 (184) |++++. |+.++|.++.+.+++ T Consensus 166 s~~~~~~~i~~~~~~l~~~~~~ 187 (198) T 2CLS_A 166 SAFTSEKSIHSIFRTASMLCLN 187 (198) T ss_dssp BTTTBHHHHHHHHHHHHHHHC- T ss_pred cCcCCcchHHHHHHHHHHHHhc Confidence 999999 999999998887654
##### No 10 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2ATX_B small GTP binding protein TC10; TC10, GTPase, P-loop, alpha-beta, HYDROLASE; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Probab=99.83 E-value=4.2e-25 Score=149.49 Aligned_cols=179 Identities=53% Similarity=0.937 Sum_probs=123.9 Template_Neff=12.100 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) .....+|+++|..++|||+|++++....+.....++........+...+..+.+.+||++|++.+...+..++..+++++ T Consensus 15 ~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 94 (194) T 2ATX_B 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194) T ss_dssp EEEEEEEEEEESTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEEECCCSSSSTTTGGGGCTTCSEEE T ss_pred CcceEEEEEECCCCCCchHHHHHHccCCCCcccCCCccceEEEEEEECCEEEEEEEEeCCCCcchhhcHhHcCCCCCEEE Confidence 45678999999999999999999987655443333222222333334445677899999999887777777888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) +|+|+++..++......|...+.......|+++++||.|+.........................++...+...++++|+ T Consensus 95 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 174 (194) T 2ATX_B 95 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 174 (194) T ss_dssp EEEETTCHHHHHHCCCCCHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHGGGTCCCCCHHHHHHHHHHTTCSCEEECCT T ss_pred EEEeCCCHHHHHHHHHhhHHHHHHHCCCCCEEEEEcCcccCCCHHHHHHHhcCCCCCccHHHHHHHHHHhCCCeEEEecC Confidence 99999988777766556666554443578999999999987643222221111111122222333344444467899999 Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184) +++.|+.++|.++.+.+++ T Consensus 175 ~~~~~i~~~~~~i~~~~~~ 193 (194) T 2ATX_B 175 LTQKGLKTVFDEAIIAILT 193 (194) T ss_dssp TTCTTHHHHHHHHHHHHHC T ss_pred CcCccHHHHHHHHHHHHhC Confidence 9999999999999887764
##### No 11 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3Q3J_B Plexin-A2, Rho-related GTP-binding protein Rho6; Ras-binding domain, plexin, small gtpase; HET: GNP; 1.971A {Homo sapiens} Probab=99.83 E-value=6.5e-25 Score=151.84 Aligned_cols=179 Identities=45% Similarity=0.808 Sum_probs=118.5 Template_Neff=10.800 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ....++|+++|.+++|||+|++++....+.....++....+.......+..+.+.+||++|.+.+...+..++..+|+++ T Consensus 24 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i 103 (214) T 3Q3J_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214) T ss_dssp ---CEEEEEECSTTSSHHHHHCCCCCSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE T ss_pred CcceEEEEEECCCCCCHHHHHHHHhhCCCCcccCCCcceEEEEEeeeCCeeEEEEEEeCCCChhhhhchHHhcCCCCEEE Confidence 45678999999999999999999987655443333332222222333445678899999998877777888888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) +|+|+++..++......|...+.......|+++|+||+|+.....................+...++...+...++++|+ T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 183 (214) T 3Q3J_B 104 LCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 183 (214) T ss_dssp EEEETTCTHHHHHCCCCCHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCT T ss_pred EEEeCCChHHHHHHHHHHHHHHHHHCCCCeEEEEEcccccccChHHHHHHhhccCCCCCHHHHHHHHHHhCCCEEEEecC Confidence 99999988777764445555444333578999999999987532211111111111112223333344444345889999 Q sequence1 165 KTKD-GVREVFEMATRAALQ 183 (184) Q Consensus 165 ~~~~-~i~~~~~~~~~~~~~ 183 (184) +++. |+.++|.++...+++ T Consensus 184 ~~~~~~i~~~~~~l~~~~~~ 203 (214) T 3Q3J_B 184 FTSEKSIHSIFRTASMLCLN 203 (214) T ss_dssp TTCHHHHHHHHHHHHHHHHC T ss_pred CCCcchHHHHHHHHHHHHhc Confidence 9999 999999998877653
##### No 12 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3X1X_A Ras-related protein Rap-1b; SIGNAL TRANSDUCTION, SIGNALING PROTEIN; HET: GNP; 1.0A {Rattus norvegicus} Probab=99.82 E-value=1e-24 Score=144.26 Aligned_cols=164 Identities=30% Similarity=0.494 Sum_probs=112.8 Template_Neff=12.100 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC 86 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (184) +..+|+++|.+++|||||++++....+.....++....+......++....+.+||++|+..+...+..+...+++++++ T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (167) T 3X1X_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167) T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSCCEEEEEEEETTEEEEEEEEECCCGGGCCTTHHHHHHHCSEEEEE T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCchhcCCCCccceeEEEEEECCEEEEEEEEECCCchhHHHHHHHHhhcCCEEEEE Confidence 46899999999999999999998765544333332222233333344456789999999888877777788899999999 Q sequence1 87 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184) Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184) +++.+..++......+....... ....|+++++||+|+....... .......+.......++++|++ T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~~k~d~~~~~~~~------------~~~~~~~~~~~~~~~~~~~s~~ 149 (167) T 3X1X_A 82 YSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVG------------KEQGQNLARQWSNCAFLESSAK 149 (167) T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECTTCGGGCCSC------------HHHHHHHHHHTTCCCEEECBTT T ss_pred EeCCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccccccccccC------------HHHHHHHHHHhcCCEEEEeecC Confidence 99998776665533333222211 2468999999999987532110 1111112222233678899999 Q sequence1 166 TKDGVREVFEMATRAAL 182 (184) Q Consensus 166 ~~~~i~~~~~~~~~~~~ 182 (184) ++.|+.++|+++.+.+. T Consensus 150 ~~~~i~~~~~~l~~~~~ 166 (167) T 3X1X_A 150 SKINVNEIFYDLVRQIN 166 (167) T ss_dssp TTBSHHHHHHHHHHHHC T ss_pred CCccHHHHHHHHHHHHh Confidence 99999999999988765
##### No 13 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2A5J_A Ras-related protein Rab-2B; GTPase, Signal transduction, Structural Genomics; HET: GDP; 1.501A {Homo sapiens} SCOP: c.37.1.8 Probab=99.82 E-value=1.1e-24 Score=148.11 Aligned_cols=168 Identities=29% Similarity=0.462 Sum_probs=111.8 Template_Neff=10.900 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) +.....+||+++|..++|||+|++++..........++.... .......++....+.+||++|.+.+...+..++..+| T Consensus 16 ~~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 95 (191) T 2A5J_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191) T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS T ss_pred CCCceEEEEEEECCCCCCHHHHHHHHcCCCCCCccccceEEEEEEEEEEECCEEEEEEEEeCCCchHHHHhhHHHhcCCC Confidence 445677899999999999999999988765433222221111 1112223344567899999999888877888888999 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184) ++++|+|+++..++.....++...........|+++++||+|+....... ......++... ...+++ T Consensus 96 ~vi~v~d~s~~~s~~~~~~~~~~~~~~~~~~~pvilv~nK~D~~~~~~~~------------~~~~~~~~~~~-~~~~~~ 162 (191) T 2A5J_A 96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVK------------REEGEAFAREH-GLIFME 162 (191) T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHH-TCEEEE T ss_pred EEEEEEeCCChHHHHHHHHHHHHHHHHCCCCCEEEEEEecccccccccCC------------HHHHHHHHHHc-CCEEEE Confidence 99999999987666655443333222223468999999999986532110 00111112222 246788 Q sequence1 162 CSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~~ 183 (184) +|+.++.|+.++|+++++.+.+ T Consensus 163 ~Sa~~~~~i~e~~~~l~~~~~~ 184 (191) T 2A5J_A 163 TSAKTACNVEEAFINTAKEIYR 184 (191) T ss_dssp ECTTTCTTHHHHHHHHHHHHHH T ss_pred EeCCCCCCHHHHHHHHHHHHHH Confidence 9999999999999999887654
##### No 14 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4DJT_B GTP-binding nuclear protein GSP1; Structural Genomics, Seattle Structural Genomics; HET: GDP; 1.8A {Encephalitozoon cuniculi} Probab=99.82 E-value=1.2e-24 Score=151.15 Aligned_cols=166 Identities=23% Similarity=0.376 Sum_probs=109.8 Template_Neff=10.400 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-A-DIEVDGKQVELALWDTAGLEDYDRLRPLSYPDT 80 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~-~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 80 (184) +......+|+++|.+++|||||++++....+...+.++...... . .....+..+.+.+||++|++.+...+..++..+ T Consensus 6 ~~~~~~~ki~ivG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 85 (218) T 4DJT_B 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA 85 (218) T ss_dssp CCCEEEEEEEEECSTTSSHHHHHCBCTTCGGGCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC T ss_pred ccccceEEEEEECCCCCCHHHHHHHHhcCCCCCccCCccceeeeeeEEEcCCCCEEEEEEEeCCCcchhhhchhhhccCC Confidence 45567799999999999999999999877654433333221111 1 111122346889999999988877787888899 Q sequence1 81 DVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 159 (184) Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184) +++++|+|+++..++..... |...+.. .....|+++++||+|+........ .....+.... ...+ T Consensus 86 ~~~i~v~d~s~~~s~~~~~~-~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~------------~~~~~~~~~~-~~~~ 151 (218) T 4DJT_B 86 SGAILFFDVTSRITCQNLAR-WVKEFQAVVGNEAPIVVCANKIDIKNRQKISK------------KLVMEVLKGK-NYEY 151 (218) T ss_dssp SEEEEEEETTCHHHHHTHHH-HHHHHHHHHCSSSCEEEEEECTTCC------C------------HHHHHHTTTC-CCEE T ss_pred cEEEEEEeCCChhhHHHHHH-HHHHHHHHhCCCCcEEEEEechhhcccccCCH------------HHHHHHHHhC-CCEE Confidence 99999999998766665533 3333322 123589999999999976321100 0000111111 2578 Q sequence1 160 MECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 160 ~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) +++||+++.|+..+|.++.+.+. T Consensus 152 ~~~Sa~~~~~~~~~~~~l~~~~~ 174 (218) T 4DJT_B 152 FEISAKTAHNFGLPFLHLARIFT 174 (218) T ss_dssp EECBTTTTBTTTHHHHHHHHHHH T ss_pred EEEecCCCCchHHHHHHHHHHHh Confidence 89999999999999988877653
##### No 15 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2OV2_D Ras-related C3 botulinum toxin substrate; GTPase RAC3, small GTP binding; HET: EDO, GCP; 2.1A {Homo sapiens} Probab=99.82 E-value=1.4e-24 Score=144.25 Aligned_cols=177 Identities=56% Similarity=0.986 Sum_probs=119.1 Template_Neff=12.800 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) .+..+|+++|.+|+|||+|++++..........++............+....+.+||++|...+...+..++..++++++ T Consensus 2 ~~~~~i~i~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 81 (179) T 2OV2_D 2 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 81 (179) T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE T ss_pred CcceEEEEECCCCCChhHHHHHHhcCCCCcccCCcceeeeEEEEEECCEEEEEEEEeCCCCcchHhhhhhcCCCCCEEEE Confidence 45789999999999999999999876554333322222222222333445678899999988887777778889999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184) |+|.++..++......+...+.......|+++++||.|+...........+.............++.......++.+|++ T Consensus 82 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (179) T 2OV2_D 82 CFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSAL 161 (179) T ss_dssp EEETTCHHHHHHCCCCCHHHHHHHCTTCCEEEEEECHHHHSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT T ss_pred EeeCCChHHHHHHHHhhhHHHHHHCCCCCEEEEEcCCcccCChhhHHHHHhcCCCCCCHHHHHHHHHHhCCcEEEEccCC Confidence 99999877676665555555544435689999999999876432222211111111112222233333333678899999 Q sequence1 166 TKDGVREVFEMATRAAL 182 (184) Q Consensus 166 ~~~~i~~~~~~~~~~~~ 182 (184) ++.|+.++++++.+.++ T Consensus 162 ~~~~i~~~~~~l~~~~~ 178 (179) T 2OV2_D 162 TQRGLKTVFDEAIRAVL 178 (179) T ss_dssp TCTTHHHHHHHHHHHHH T ss_pred CcccHHHHHHHHHHHHh Confidence 99999999999888765
##### No 16 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3REF_B Rho-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling protein; HET: GDP, SO4; 1.95A {Entamoeba histolytica} Probab=99.82 E-value=1.6e-24 Score=146.97 Aligned_cols=169 Identities=46% Similarity=0.843 Sum_probs=119.3 Template_Neff=11.800 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ....++|+++|+.++|||+|++++....+.....++...........++....+.+||++|.+.+...+..++..+|+++ T Consensus 20 ~~~~~~i~l~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 99 (194) T 3REF_B 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194) T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCSCCCCEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGGTTCSEEE T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCCCCccceEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhhcCCEEE Confidence 45678999999999999999999987765433333222222223333344567899999999888777888888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) +|+|+.+..++....+.|...+.......|+++|+||.|+........ .......++...+...++.+|+ T Consensus 100 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~~k~D~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~s~ 169 (194) T 3REF_B 100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDV----------TKQEGDDLCQKLGCVAYIEASS 169 (194) T ss_dssp EEEETTCHHHHHHCCCCCHHHHHHHCTTSEEEEEEECGGGCCTTSCCC----------CHHHHHHHHHHHTCSCEEECBT T ss_pred EEeeCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEhHHcCCcccccC----------CHHHHHHHHHHhCCCcEEEEeC Confidence 999999887777765556655544335789999999999876321110 0111122233333357889999 Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184) .++.|+.++|.++...+.+ T Consensus 170 ~~~~~i~~~~~~l~~~~~~ 188 (194) T 3REF_B 170 VAKIGLNEVFEKSVDCIFS 188 (194) T ss_dssp TTTBSHHHHHHHHHHTTSC T ss_pred CCCCCHHHHHHHHHHHHHh Confidence 9999999999999887653
##### No 17 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1GWN_C RHO-RELATED GTP-BINDING PROTEIN RHOE; GTPASE, INACTIVE GTPASE, SIGNAL TRANSDUCTION; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Probab=99.82 E-value=1.6e-24 Score=148.60 Aligned_cols=180 Identities=50% Similarity=0.934 Sum_probs=121.2 Template_Neff=11.300 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ......+|+++|.+++|||+|++++..........++....+......++....+.+||++|.+.+...+..++..++++ T Consensus 24 ~~~~~~~i~i~G~~~~GKs~l~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 103 (205) T 1GWN_C 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205) T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhhCCCCCccCCCceeEEEEEEEECCEEEEEEEEcCCCCcchhhcccccCCCCCEE Confidence 34677899999999999999999998665443333333233333333444556788999999887777777778889999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|+++....++......|...+.......|+++|+||.|+...........+.............++...+...++++| T Consensus 104 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 183 (205) T 1GWN_C 104 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 183 (205) T ss_dssp EEEEETTCHHHHHHCCCCCHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC T ss_pred EEEEeCCCHHHHHHHHHHhHHHHHHHCCCCeEEEEEcCccccCChHHHHhhhcCCCCccCHHHHHHHHHHhCCCEEEEee Confidence 99999998777766545555555443357899999999999764322222111111112223333444444445789999 Q sequence1 164 AKTKDG-VREVFEMATRAALQ 183 (184) Q Consensus 164 ~~~~~~-i~~~~~~~~~~~~~ 183 (184) ++++.| +.++|..+.+.+++ T Consensus 184 ~~~~~~~i~~~~~~l~~~~~~ 204 (205) T 1GWN_C 184 ALQSENSVRDIFHVATLACVN 204 (205) T ss_dssp TTTCHHHHHHHHHHHHHHHHH T ss_pred cCCCCchHHHHHHHHHHHHhc Confidence 999999 99999998887754
##### No 18 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6HH2_A Ras-related protein Rab-7L1; Rab GTPase, membrane trafficking, SIGNALING; HET: GDP; 1.449A {Homo sapiens} Probab=99.82 E-value=1.7e-24 Score=145.69 Aligned_cols=166 Identities=27% Similarity=0.457 Sum_probs=110.3 Template_Neff=11.300 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIEV-DGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) .....++|+++|.+++|||||++++....+.....++....+. ..... +.....+.+||++|++.+...+..++..+| T Consensus 6 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 85 (180) T 6HH2_A 6 SRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGLERFTSMTRLYYRDAS 85 (180) T ss_dssp -CEEEEEEEEEESTTSSHHHHHHHHSSTTTCCTTHHHHCSSSEEEEEEEETTEEEEEEEEECGGGGGGCSCCHHHHTTCS T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceEEEEEEEEEEEeCCeEEEEEEEeCCCCHHHHHHHHHHhcCCC Confidence 4567799999999999999999999876654332222221111 11111 223457889999998888777877888999 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184) ++++|+|+++..++..... |...+... ....|+++++||.|+....... .....++..... T Consensus 86 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-------------~~~~~~~~~~~~ 151 (180) T 6HH2_A 86 AAVIMFDVTNATTFSNSQR-WKQDLDSKLTLPNGEPVPALLLANKSDLSPWAVSR-------------DQIDRFSKENGF 151 (180) T ss_dssp EEEEEEETTCHHHHHHHHH-HHHHHHHHCBCTTSCBCCEEEEEECTTSSSCSSCH-------------HHHHHHHHHTTC T ss_pred EEEEEEeCCCHHHHHHHHH-HHHHHHHHcCCCCCCCCCEEEEEecccCCCccCCH-------------HHHHHHHHHcCC Confidence 9999999998777766533 33333221 2367999999999986421110 111111222223 Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) ..++++|+.++.|+.++|.++.+.+++ T Consensus 152 ~~~~~~s~~~~~~i~~~~~~l~~~~~~ 178 (180) T 6HH2_A 152 TGWTETSVKENKNINEAMRVLIEKMMR 178 (180) T ss_dssp SEEEECBTTTTBSHHHHHHHHHHHHHH T ss_pred ccEEEeeCCCCCCHHHHHHHHHHHHHh Confidence 457889999999999999999887653
##### No 19 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3X1Z_A Ras-related protein Rap-1b; SIGNAL TRANSDUCTION, SIGNALING PROTEIN; HET: GNP; 1.25A {Rattus norvegicus} Probab=99.82 E-value=2.1e-24 Score=142.82 Aligned_cols=164 Identities=30% Similarity=0.493 Sum_probs=114.3 Template_Neff=12.100 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC 86 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (184) +..+|+++|.+|+|||||++++....+.....++....+......++....+.+||++|+..+...+..+...+|+++++ T Consensus 2 ~~~~i~vvG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ii~v 81 (167) T 3X1Z_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFAAMRDLYMKNGQGFALV 81 (167) T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECSSCSCGGGGHHHHHHCSEEEEE T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCchhcCCCCcceeeEEEEEECCEEEEEEEEeCCCchHHHHHHHHHhhcCCEEEEE Confidence 46899999999999999999998765544333332222222333344556789999999888877788888899999999 Q sequence1 87 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184) Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184) +++++..++....+.+....... ....|+++++||.|........ ......++.......++++|++ T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ili~~k~D~~~~~~~~------------~~~~~~~~~~~~~~~~~~~s~~ 149 (167) T 3X1Z_A 82 YSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVG------------KEQGQNLARQWSNCAFLESSAK 149 (167) T ss_dssp EETTCHHHHHTHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSC------------HHHHHHHHHHTTSCEEEECBTT T ss_pred EeCCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccccccccccC------------HHHHHHHHHHhcCCeEEEeeCC Confidence 99998777766544444333222 2468999999999987532110 1111112222223678999999 Q sequence1 166 TKDGVREVFEMATRAAL 182 (184) Q Consensus 166 ~~~~i~~~~~~~~~~~~ 182 (184) ++.|+.++|+++.+.+. T Consensus 150 ~~~~i~~~~~~l~~~i~ 166 (167) T 3X1Z_A 150 SKINVNEIFYDLVRQIN 166 (167) T ss_dssp TTBSHHHHHHHHHHHHH T ss_pred CCccHHHHHHHHHHHHh Confidence 99999999999988765
##### No 20 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4U5X_A OsRac1; Small GTPase, Rac, Plant; HET: GOL, GNP; 1.9A {Oryza sativa subsp. japonica} Probab=99.81 E-value=2.6e-24 Score=143.12 Aligned_cols=175 Identities=47% Similarity=0.875 Sum_probs=119.3 Template_Neff=12.600 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) .+..+|+++|++++|||||++++....+.....++...........++....+.+||++|.+.+...+..++..++++++ T Consensus 3 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (178) T 4U5X_A 3 TRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGSVVNLGLWDTAGLEDYSRLRPLSYRGADVFIL 82 (178) T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHCSCCCSCCCSCCCEEEEEEEETTEEEEEEEECCCCCGGGTTTHHHHHTTCSEEEE T ss_pred ceeEEEEEECCCCCCceeehhhhccCCCCCCccCCcccceeEEEEeCCeEEEEEEEeCCCCcchhccchhhcCCCCEEEE Confidence 56789999999999999999999877654433333322223233344455788999999998887777778889999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184) |+|+.+..++......|...+....+..|+++++||.|+......... ..............++...+...++++|++ T Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (178) T 4U5X_A 83 SFSLISRASYENVQKKWMPELRRFAPGVPVVLVGTKLDLREDRAYLAD--HPASSIITTEQGEELRKLIGAVAYIECSSK 160 (178) T ss_dssp EEETTCHHHHHHCCCCCHHHHHHHSTTCCEEEEEECHHHHTCHHHHHT--SCGGGCCCHHHHHHHHHHHTCSEEEECBTT T ss_pred EeeCCChHHHHHHHHhcHHHHHHhCCCCCEEEEecCccccCChhhhcc--CCcccccCHHHHHHHHHHHCCCEEEEcCCC Confidence 999998777766645555555444357899999999998764321100 000000111122222333333678999999 Q sequence1 166 TKDGVREVFEMATRAAL 182 (184) Q Consensus 166 ~~~~i~~~~~~~~~~~~ 182 (184) ++.|+.++|.++.+.++ T Consensus 161 ~~~~i~~~~~~l~~~~~ 177 (178) T 4U5X_A 161 TQRNIKAVFDTAIKVVL 177 (178) T ss_dssp TTBSHHHHHHHHHHHHH T ss_pred cCccHHHHHHHHHHHHh Confidence 99999999999888765
##### No 21 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2Q3H_A Ras homolog gene family, member; GTPase, Structural Genomics, Structural Genomics; HET: GDP; 1.73A {Homo sapiens} Probab=99.81 E-value=2.6e-24 Score=146.81 Aligned_cols=180 Identities=46% Similarity=0.840 Sum_probs=114.2 Template_Neff=11.700 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) .....++|+++|..++|||+|++++....+.....++...........++....+.+||++|++.+...+..++..++++ T Consensus 16 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 95 (201) T 2Q3H_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201) T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCCcceeEEEEEECCEEEEEEEEeCCCChhhhhchhHhcCCCCEE Confidence 34567899999999999999999998766544333322222222233334457889999999988877777788899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|+|+.+..++......+...+....+..|+++++||.|+.........................+........++.+| T Consensus 96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (201) T 2Q3H_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECS 175 (201) T ss_dssp EEEEETTCHHHHHHCCCCCHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC T ss_pred EEEeeCCCHHHHHHHHHccHHHHHHHCCCCCEEEEEeccccccchhHHHhhccCCCcccCHHHHHHHHHHhCCCeEEEcc Confidence 99999998776666545555555444456899999999998764322111111111111111222222222336788999 Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184) ++++.|+.++|.++.+.+.+ T Consensus 176 ~~~~~~i~~~~~~l~~~~~~ 195 (201) T 2Q3H_A 176 ALTQKNLKEVFDAAIVAGIQ 195 (201) T ss_dssp TTTCTTHHHHHHHHHHHHHH T ss_pred CCCCccHHHHHHHHHHHHhh Confidence 99999999999998887654
##### No 22 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1M7B_A Rho-related GTP-binding protein RhoE; small GTPase, SIGNALING PROTEIN; HET: GTP; 2.0A {Homo sapiens} SCOP: c.37.1.8 Probab=99.81 E-value=3.5e-24 Score=144.00 Aligned_cols=180 Identities=50% Similarity=0.934 Sum_probs=120.4 Template_Neff=12.000 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ...+..+|+++|.+++|||+|++++..........+.........+...+....+.+||++|.+.+...+..+...++++ T Consensus 3 ~~~~~~~i~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 82 (184) T 1M7B_A 3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184) T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE T ss_pred CcceeeEEEEEcCCCCChHHHHHHHhcCCCCCccCCCceeEEEEEEEECCeEEEEEEEeCCCCcchhccccccCCCCCEE Confidence 45678999999999999999999998765543333322222233333444567788999999888877777778899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|+++++..++......+...+.......|+++++||.|+.........................++...+...++.+| T Consensus 83 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184) T 1M7B_A 83 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 162 (184) T ss_dssp EEEEETTCHHHHHHCCCCCHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEeccccccCChHHHHhhhcCCCCccCHHHHHHHHHHhCCCeEEEee Confidence 99999998777766655566555444457899999999998763221111111111111122223333343334789999 Q sequence1 164 AKTKDG-VREVFEMATRAALQ 183 (184) Q Consensus 164 ~~~~~~-i~~~~~~~~~~~~~ 183 (184) ++++.| +.+++.++.+.+.. T Consensus 163 ~~~~~~~i~~~~~~l~~~~~~ 183 (184) T 1M7B_A 163 ALQSENSVRDIFHVATLACVN 183 (184) T ss_dssp TTTBHHHHHHHHHHHHHHHHT T ss_pred cCCCCchHHHHHHHHHHHHhc Confidence 999999 99999998887653
##### No 23 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2GF0_B GTP-binding protein Di-Ras1; DIRAS, GDP/GTP binding, GTP hydrolysis; HET: GDP; 1.9A {Homo sapiens} SCOP: c.37.1.8 Probab=99.81 E-value=3.5e-24 Score=146.46 Aligned_cols=166 Identities=27% Similarity=0.429 Sum_probs=100.7 Template_Neff=11.100 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) +.....++|+++|.+|+|||||++++....+.....++....+......+.....+.+||++|++.+...+..++..+++ T Consensus 3 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 82 (199) T 2GF0_B 3 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHA 82 (199) T ss_dssp -CCCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEET-TEEEEEEEECCGH------HHHHHHCS-E T ss_pred CCcCCcEEEEEECCCCCCHHHHHHHHhCCCCCcccCCCCcceeEEEEEECCEEEEEEEEcCCCcHHhHHhhHHHhcCCCE Confidence 34567789999999999999999999876654333332222222222223345678999999998887777778889999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKH--FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184) +++|+|+++..++......+..+... .....|+++|+||+|+....... .....++...+ ..++ T Consensus 83 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~-------------~~~~~~~~~~~-~~~~ 148 (199) T 2GF0_B 83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDT-------------REAQAVAQEWK-CAFM 148 (199) T ss_dssp EEEEEETT---C----HHHHHTTHHHHSCGGGSCEEEEEECTTCSSCSSCH-------------HHHHHHHHHHT-CEEE T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEeCccCCCCCCCH-------------HHHHHHHHHHC-CCEE Confidence 99999999887777664433333221 12367899999999986421110 11111111222 5688 Q sequence1 161 ECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~~ 182 (184) .+|++++.|+.++|.++...+. T Consensus 149 ~~Sa~~~~~i~~l~~~l~~~~~ 170 (199) T 2GF0_B 149 ETSAKMNYNVKELFQELLTLET 170 (199) T ss_dssp ECBTTTTBSHHHHHHHHHHHCS T ss_pred EeeCCCCCCHHHHHHHHHHHHH Confidence 9999999999999998877653
##### No 24 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2REX_D Plexin-B1, Rho-related GTP-binding protein Rho6; complex, Structural Genomics Consortium, SGC; HET: GNP, UNX; 2.3A {Homo sapiens} Probab=99.81 E-value=3.6e-24 Score=145.52 Aligned_cols=181 Identities=44% Similarity=0.795 Sum_probs=119.3 Template_Neff=11.900 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) +......+|+++|..++|||+|++.+....+.....++....+.......+....+.+||++|...+...+..++..+|+ T Consensus 5 ~~~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 84 (197) T 2REX_D 5 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 84 (197) T ss_dssp CCSEEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGGTTCSE T ss_pred CCCcceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEeecCCeEEEEEEEECCCCcchhhchHhhcCCCCE Confidence 34566789999999999999999999866554433333222222233334456788899999988777777788889999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++|+|+++..++......|...+.......|+++++||+|+...........+.........+...++...+...++++ T Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (197) T 2REX_D 85 VLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEG 164 (197) T ss_dssp EEEEEETTCTTTC--CHHHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEEechhhccCHHHHHHHhhccCCCCCHHHHHHHHHHhCCcEEEEe Confidence 99999999877776644455544443335789999999999976432111111111111112223334444443348899 Q sequence1 163 SAKTKD-GVREVFEMATRAALQ 183 (184) Q Consensus 163 s~~~~~-~i~~~~~~~~~~~~~ 183 (184) |+.++. |+.++|.++.+.+.+ T Consensus 165 s~~~~~~~i~~l~~~i~~~~~~ 186 (197) T 2REX_D 165 SAFTSEKSIHSIFRTASMLCLN 186 (197) T ss_dssp CTTTCHHHHHHHHHHHHHHCC- T ss_pred cCCCChhHHHHHHHHHHHHHhc Confidence 999999 999999998887643
##### No 25 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3REG_B Rho-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling protein; HET: GSP; 1.801A {Entamoeba histolytica} Probab=99.81 E-value=3.8e-24 Score=144.83 Aligned_cols=169 Identities=46% Similarity=0.842 Sum_probs=117.9 Template_Neff=12.100 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ....++|+++|+.|+|||+|++++....+.....++............+....+.+||++|++.+...+..++..+|+++ T Consensus 20 ~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 99 (194) T 3REG_B 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194) T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCcccceEEEeeeCCeEEEEEEEECCCchHhHhhhhhhcCCCcEEE Confidence 46678999999999999999999987765433333222222222233344567899999999888777877888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) +|+|+.+..++....+.|...+.......|+++|+||.|+......... ......++.......++.+|+ T Consensus 100 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~~k~D~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~s~ 169 (194) T 3REG_B 100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVT----------KQEGDDLCQKLGCVAYIEASS 169 (194) T ss_dssp EEEETTCHHHHHHCCCCCHHHHHHHHTTSEEEEEEECGGGCCTTSCCCC----------HHHHHHHHHHHTCSCEEECBT T ss_pred EEEeCCCcccHHHHHHhhHHHHHHhcCCCcEEEEEechhcCCCCCCccc----------HHHHHHHHHHHCCcEEEEccC Confidence 9999998777766655556555444457899999999998763221100 011112222333357889999 Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184) .++.++.++|.++.+.+.. T Consensus 170 ~~~~~i~~~~~~i~~~~~~ 188 (194) T 3REG_B 170 VAKIGLNEVFEKSVDCIFS 188 (194) T ss_dssp TTTBSHHHHHHHHHHHHHC T ss_pred CCCCCHHHHHHHHHHHHHh Confidence 9999999999999887753
##### No 26 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2FN4_A Ras-related protein R-Ras; RRAS, GDP/GTP binding, GTP hydrolysis; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Probab=99.81 E-value=4.1e-24 Score=143.78 Aligned_cols=167 Identities=30% Similarity=0.451 Sum_probs=114.7 Template_Neff=11.500 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ......+|+++|..++|||||++++....+.....++....+......++....+.+||++|.+.+...+..++..++++ T Consensus 5 ~~~~~~~i~iiG~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 84 (181) T 2FN4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181) T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE T ss_pred CCCccEEEEEECCCCCCHHHHHHHHhcCCCcCCCCCCCcccEEEEEEECCEEEEEEEEeCCCChhhHHhHHHHHhhCCEE Confidence 34567899999999999999999998775544333332222222223334456788999999888877788888899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) ++|+++++..++......+....... ....|+++|+||+|+....... ......+.... ...++++ T Consensus 85 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~k~D~~~~~~~~------------~~~~~~~~~~~-~~~~~~~ 151 (181) T 2FN4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVP------------RSEASAFGASH-HVAYFEA 151 (181) T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSC------------HHHHHHHHHHT-TCEEEEC T ss_pred EEEEECCCHHHHHHHHHHHHHHHhhcCCCCCeEEEEEechhccccCCCC------------HHHHHHHHHHc-CCeEEEE Confidence 99999998776666554444443322 2467999999999987632110 00111111111 2568899 Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184) |++++.|+.+++.++.+.+.+ T Consensus 152 s~~~~~~~~~~~~~l~~~~~~ 172 (181) T 2FN4_A 152 SAKLRLNVDEAFEQLVRAVRK 172 (181) T ss_dssp BTTTTBSHHHHHHHHHHHHHH T ss_pred ecCCCCCHHHHHHHHHHHHHH Confidence 999999999999998877653
##### No 27 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5C2K_A Transforming protein RhoA,Rac GTPase-activating protein; GTPase activation, fusion protein, small; HET: GDP; 1.42A {Homo sapiens} Probab=99.81 E-value=4.4e-24 Score=161.16 Aligned_cols=180 Identities=97% Similarity=1.484 Sum_probs=123.6 Template_Neff=10.900 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) .....++|+++|.+|+|||||++++....+.....++........+..++....+.+||++|++.+...+..++..+|++ T Consensus 8 ~~~~~~~i~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 87 (415) T 5C2K_A 8 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 87 (415) T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCCEE T ss_pred CCCcceEEEEECCCCCCHHHHHHHHhCCCCCCccCCCcCCeeEEEEEECCEEEEEEEEcCCCcHHHHHHHHHHhcCCCEE Confidence 34567899999999999999999998776544333322222233334445567899999999988888888888899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|+|+++..++......+...........|+++|+||.|+.........................++...+...++++| T Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (415) T 5C2K_A 88 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 167 (415) T ss_dssp EEEEETTCHHHHHHCCCCCHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC T ss_pred EEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEEecccCCCChHhHHHHHHHHhcCCCHHHHHHHHHHhCCCcEEEee Confidence 99999998877776655566555444346899999999998764322222211111111222222333333336788999 Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184) +.++.|+.++|+++...+.+ T Consensus 168 a~~~~~i~~~~~~l~~~~~~ 187 (415) T 5C2K_A 168 AKTKDGVREVFEMATRAALQ 187 (415) T ss_dssp TTTCTTHHHHHHHHHHHHHH T ss_pred cCcCcCHHHHHHHHHHHHHH Confidence 99999999999988877653
##### No 28 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4YON_B pREX1, Rac1(G12V); Protein binding; 1.95A {Homo sapiens} Probab=99.81 E-value=4.5e-24 Score=141.97 Aligned_cols=176 Identities=57% Similarity=0.979 Sum_probs=116.7 Template_Neff=12.700 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) .+.++|+++|.+++|||+|++++..........++............+....+.+||++|.+.+...+..++..+|++++ T Consensus 3 ~~~~~i~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 82 (179) T 4YON_B 3 MQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 82 (179) T ss_dssp CCEEEEEEEECGGGCHHHHHHHHHSTTCSCSCCCSCCCCEEEEEEETTEEEEEEEECCTTCTTCTTTGGGGCTTCSEEEE T ss_pred ceeEEEEEECCCCCCHHHHHHHHHcCCCCCCccCCccceeEEEEEECCEEEEEEEEeCCCCcchhhhhHHHcCCCCEEEE Confidence 56789999999999999999999876543322222212222222233345678899999988777777777889999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184) |+|..+..++......+...+.......|+++++||.|+.........................++...+...++++|++ T Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 162 (179) T 4YON_B 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 162 (179) T ss_dssp EEETTCHHHHHHCCCCCHHHHHHHCTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT T ss_pred EEECCChHHHHHHHHhhHHHHHHHCCCCCEEEEeecchhcCChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCcEEEcccc Confidence 99999877666665455555544435689999999999876432211111111111111222223333333578899999 Q sequence1 166 TKDGVREVFEMATRAA 181 (184) Q Consensus 166 ~~~~i~~~~~~~~~~~ 181 (184) ++.|+.++++++.+.+ T Consensus 163 ~~~~i~~~~~~l~~~~ 178 (179) T 4YON_B 163 TQRGLKTVFDEAIRAV 178 (179) T ss_dssp TCTTHHHHHHHHHHTC T ss_pred ccccHHHHHHHHHHHh Confidence 9999999999988765
##### No 29 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1GUA_A RAP1A, C-RAF1, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER; ONCOGENE PROTEIN/KINASE/EFFECTOR PROTEIN GTP-BINDING-PROTEIN, COMPLEX; HET: GNP; 2.0A {Homo sapiens} SCOP: c.37.1.8 Probab=99.80 E-value=4.8e-24 Score=140.85 Aligned_cols=164 Identities=30% Similarity=0.482 Sum_probs=111.6 Template_Neff=12.300 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC 86 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (184) +..+|+++|..|+|||||++++..........++...........+.....+.+||++|.+.+...+..++..+++++++ T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (167) T 1GUA_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167) T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEECCSSCSCCTTHHHHHHHCSEEEEE T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCccCCccCCCcccceEEEEEECCEEEEEEEEeCCCchhhHHHHHHHHhcCCEEEEE Confidence 46789999999999999999998765543333332222223333344456789999999888877777788899999999 Q sequence1 87 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184) Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184) +++++..++......+....... ....|+++++||.|+....... ...............++.+|++ T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~~k~d~~~~~~~~------------~~~~~~~~~~~~~~~~~~~s~~ 149 (167) T 1GUA_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVG------------KEQGQNLARQWCNCAFLESSAK 149 (167) T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTCSCCCEEEEEECTTCGGGCCSC------------HHHHHHHHHHTTTCEEEECBTT T ss_pred EeCCChHHHHHHHHHHHHHHhhCCCCCCcEEEEEecccccccccCC------------HHHHHHHHHHhcCCEEEEeeCC Confidence 99998766665543333332221 2467999999999997532110 0111111222223578889999 Q sequence1 166 TKDGVREVFEMATRAAL 182 (184) Q Consensus 166 ~~~~i~~~~~~~~~~~~ 182 (184) ++.|+.++|+++.+.+. T Consensus 150 ~~~~i~~~~~~l~~~~~ 166 (167) T 1GUA_A 150 SKINVNEIFYDLVRQIN 166 (167) T ss_dssp TTBSHHHHHHHHHHHHC T ss_pred CCcCHHHHHHHHHHHHh Confidence 99999999999887664
##### No 30 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4GZL_A Ras-related C3 botulinum toxin substrate; Rossmann fold, GTP binding, membrane; HET: GNP; 2.0A {Homo sapiens} Probab=99.80 E-value=4.9e-24 Score=146.34 Aligned_cols=178 Identities=58% Similarity=0.989 Sum_probs=115.7 Template_Neff=11.000 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ...+.++|+++|.+++|||||++++..........++............+....+.+||++|...+...+..++..+|++ T Consensus 26 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~v 105 (204) T 4GZL_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204) T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE T ss_pred cCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcccceeEEEEECCeEEEEEEEeCCCCccchhhhHHhcCCCCEE Confidence 45677899999999999999999998765543333322222222223334456788999999987777777788899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|++.++..++......+...+....+..|+++++||.|+.....................+...++...+...++++| T Consensus 106 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 185 (204) T 4GZL_A 106 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204) T ss_dssp EEEEETTCHHHHHHCCCCCHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC T ss_pred EEEEECCChHHHHHHHHHHHHHHHHHCCCCCEEEEeechhhcCChHHHHHHHhCCCCCCCHHHHHHHHHHhCCceEEEEe Confidence 99999998766665544455444433356899999999998764322221111111111222222333333336789999 Q sequence1 164 AKTKDGVREVFEMATRAA 181 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~ 181 (184) ++++.++.++|+++.+.+ T Consensus 186 ~~~~~~i~~l~~~i~~~~ 203 (204) T 4GZL_A 186 ALTQRGLKTVFDEAIRAV 203 (204) T ss_dssp TTTCTTHHHHHHHHHHTT T ss_pred CCCChhHHHHHHHHHHHh Confidence 999999999999988765
##### No 31 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5VCU_A Ras-related c3 botulinum toxin substrate; SSGCID, RAS, botulinum toxin, GTP; HET: GDP; 1.85A {Naegleria fowleri} Probab=99.80 E-value=5.3e-24 Score=145.75 Aligned_cols=177 Identities=54% Similarity=0.909 Sum_probs=118.1 Template_Neff=12.000 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) ....+|+++|.+|+|||+|++++..........++........+...+....+.+||++|++.+...+..++..+|++++ T Consensus 9 ~~~~~~~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (208) T 5VCU_A 9 MESIKCVVVGDGAVGKTALLIAYSSGCFPEDYVPTVFDNYNKNIPYGDGIVSIALYDTAGQEDYDRLRPLSYPDTDVFLV 88 (208) T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE T ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCchhcCcceeEEEEEeeeCCeEEEEEEEeCCCChhHHhhhhhcCCCCCEEEE Confidence 34578999999999999999999877654433333222222233333445678999999998887778888889999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184) |+|++...++......+...+.......|+++|+||.|+.........................++...+...++.+|++ T Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iiv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 168 (208) T 5VCU_A 89 CFSLENPNSLENCHSKWAEELKHYNPDTPIVLVGTKLDLKKDEEYVKKLKEKKISPVTTEQGQEMKDKIKACGYIECSAK 168 (208) T ss_dssp EEETTCHHHHHHCCCCCCHHHHHHCTTCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT T ss_pred EEeCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCccCCCHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCeEEEecCC Confidence 99999877776664455555543334689999999999876432211111111111111222223333333678899999 Q sequence1 166 TKDGVREVFEMATRAAL 182 (184) Q Consensus 166 ~~~~i~~~~~~~~~~~~ 182 (184) ++.|+.++|.++.+.+. T Consensus 169 ~~~~i~~l~~~i~~~~~ 185 (208) T 5VCU_A 169 TMENLTEAFNMAIDIAM 185 (208) T ss_dssp TCTTHHHHHHHHHHHHH T ss_pred CCccHHHHHHHHHHHHH Confidence 99999999998887764
##### No 32 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4RKE_A GH01619p; GTP hydrolysis, hydrolase; HET: 1PE, GNP; 2.0006A {Drosophila melanogaster} Probab=99.80 E-value=5.5e-24 Score=142.17 Aligned_cols=167 Identities=29% Similarity=0.479 Sum_probs=114.1 Template_Neff=11.900 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) .....++|+++|..++||||+++++...........+.... ........+....+.+||++|...+...+..++..+|+ T Consensus 6 ~~~~~~~i~~vG~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~d~ 85 (176) T 4RKE_A 6 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGLEAFRSITRSYYRGAAG 85 (176) T ss_dssp TBSEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCCSCEEEEEEEEETTEEEEEEEEECCCCTTTCCSCCGGGTTCSE T ss_pred cccceEEEEEEcCCCCCHHHHHHHHcCCCCCCCCccccEEEEEEEEEEECCEEEEEEEEeCCCchHhHHhhHHHhcCCCE Confidence 44677899999999999999999988765443222111111 11122233445678999999998888888888899999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++|+|+++..++.....++...........|+++++||+|+....... ......++... ..+++++ T Consensus 86 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~k~d~~~~~~~~------------~~~~~~~~~~~-~~~~~~~ 152 (176) T 4RKE_A 86 ALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDSRREVK------------KEEGEAFAREH-GLVFMET 152 (176) T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHSSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHH-TCEEEEE T ss_pred EEEEEeCCChHHHHHHHHHHHHHHHHCCCCCEEEEEEecccccccccCC------------HHHHHHHHHHc-CCEEEEe Confidence 9999999987776666443333333223468999999999987532110 11111112222 2578999 Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184) |++++.++.++|..+++.+.. T Consensus 153 sa~~~~~i~~~~~~l~~~~~~ 173 (176) T 4RKE_A 153 SARTAANVEEAFINTAKEIYE 173 (176) T ss_dssp CTTTCTTHHHHHHHHHHHHHH T ss_pred cCCCCCCHHHHHHHHHHHHHH Confidence 999999999999998887653
##### No 33 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5LDD_C Mon1, Ccz1, Rab small monomeric; heterodimeric GEF protein, endosomal maturation; HET: SO4; 2.496A {Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)} Probab=99.80 E-value=5.9e-24 Score=146.60 Aligned_cols=168 Identities=26% Similarity=0.459 Sum_probs=108.0 Template_Neff=10.300 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ....++|+++|.+++|||||++++....+.....++....+ ...+...+....+.+||++|+..+...+..++..+|++ T Consensus 7 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~v 86 (207) T 5LDD_C 7 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSASYKATIGADFLTREVMVDDRQVTMQLWDTAGQERFQSLGVAFYRGADCC 86 (207) T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHSCGGGCEEEHHHHSEEEEEEEEEETTEEEEEEEEEECCCGGGSTTHHHHHTTCSEE T ss_pred cceeEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEeCCCCHHHHhhHHHHhcCCCEE Confidence 45678999999999999999999987765433333222221 12223334456789999999888877788888899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKH----FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 159 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184) ++|+|+++..++......+...... .....|+++|+||.|+........ ......++.......+ T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 155 (207) T 5LDD_C 87 VLVFDVNNAKSFDALDSWRDEFLIQASPRDPENFPFVVLGIKIDVEESKRVIS-----------TKRAQTFCQSKGGIPY 155 (207) T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCSSGGGCCEEEEEEEC-----CCSSC-----------HHHHHHHHHHTTCCCE T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecccCCcccCCCC-----------HHHHHHHHHHhCCCCE Confidence 9999999877666553333322211 123689999999999875321100 0011111222223568 Q sequence1 160 MECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 160 ~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) +++|++++.|+.++|.++...+.+ T Consensus 156 ~~~S~~~~~~i~~~~~~l~~~~~~ 179 (207) T 5LDD_C 156 FETSAKEAINVEEAFQVIARNALM 179 (207) T ss_dssp EEEECC-CTTHHHHHHHHHHHHHH T ss_pred EEccCCCCCCHHHHHHHHHHHHHh Confidence 899999999999999998877653
##### No 34 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5YOZ_A Rab5a; Rab, GTPase, early endocytosis, GTP; NMR {Leishmania donovani} Probab=99.80 E-value=6.1e-24 Score=141.95 Aligned_cols=166 Identities=26% Similarity=0.443 Sum_probs=113.1 Template_Neff=12.000 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) +......+|+++|..++|||||++++..........++....+ ......++....+.+||++|...+...+..++..++ T Consensus 10 ~~~~~~~~i~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 89 (177) T 5YOZ_A 10 LMEATSAKIVMLGESGAGKSSIALRFTRNEFLANQETTIGAAFLSKTVMIDGRALKYEIWDTAGLERFRSLAPIYYRGAS 89 (177) T ss_dssp CCSCEEEEEEEECCTTTTHHHHHHHHHTSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECTTCSSSTHHHHTTSSCS T ss_pred ccccceeEEEEECCCCCCHHHHHHHHcCCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCC Confidence 3456778999999999999999999987654332222211111 222233344567899999999888777888888999 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184) ++++++|+.+...+......+...........|+++++||.|+....... ......++.......+++ T Consensus 90 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~~k~d~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 157 (177) T 5YOZ_A 90 GALVVYDITNSESLKKAQTWIKELRANADPSLIIVLVGNKKDLGSLRQVS------------FEDGQRLAAEEQLAAFYE 157 (177) T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGTTTCSSC------------HHHHHHHHHHTTCCEEEE T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCCccccceec------------HHHHHHHHHHcCCceeEE Confidence 99999999987666665444444333333467899999999997632110 111112222223357899 Q sequence1 162 CSAKTKDGVREVFEMATRA 180 (184) Q Consensus 162 ~s~~~~~~i~~~~~~~~~~ 180 (184) +|+.++.++.++|.++.+. T Consensus 158 ~s~~~~~~i~~~~~~l~~~ 176 (177) T 5YOZ_A 158 ASAKDNNNVEQVFLDLAAK 176 (177) T ss_dssp ECGGGTTTHHHHHHHHHHH T ss_pred eecCCCCCHHHHHHHHHhh Confidence 9999999999999988765
##### No 35 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2V55_D RHO-ASSOCIATED PROTEIN KINASE 1 (E.C.2.7.11.1); SERINE/THREONINE-PROTEIN KINASE, RHOE, KINASE, ROCK-I; HET: GTP, ANP; 3.705A {HOMO SAPIENS} Probab=99.80 E-value=6.3e-24 Score=144.84 Aligned_cols=179 Identities=50% Similarity=0.938 Sum_probs=121.9 Template_Neff=11.700 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) .....+++++|.+++|||+|++++....+.....++....+.......+....+.+||++|.+.+...+..++..+|+++ T Consensus 20 ~~~~~~i~l~G~~~~GKs~li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 99 (200) T 2V55_D 20 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 99 (200) T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCCCEECCEEEEEETTEEEEEEEEEECCCGGGTTTGGGSCTTCSEEE T ss_pred CCccEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCCCCceeEEEEEECCEEEEEEEEeCCCChhhHHhHHHHccCCCEEE Confidence 45678999999999999999999987655443333332333333334445677889999998877777777778899999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) +|+|+.+..++......+...+....+..|+++|+||.|+.........................++...+...++++|+ T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 179 (200) T 2V55_D 100 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 179 (200) T ss_dssp EEEETTCGGGTTHHHHTHHHHHHTTSCSSEECEEEECGGGGGCHHHHHTTGGGTCCCCCHHHHHHHHHHHTCSCEEECCS T ss_pred EEeeCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEehhhcCCcccchHHHhhhhhccCCHHHHHHHHHHhCCeeEEEeec Confidence 99999987777666555665554443568999999999987632211111111111112222333344444457899999 Q sequence1 165 KTKDG-VREVFEMATRAALQ 183 (184) Q Consensus 165 ~~~~~-i~~~~~~~~~~~~~ 183 (184) +++.| +.++|..+.+.++. T Consensus 180 ~~~~~~i~~~~~~l~~~~~~ 199 (200) T 2V55_D 180 LQSENSVRDIFHVATLACVN 199 (200) T ss_dssp SSCTHHHHHHHHHHHHHHHC T ss_pred CCCCCHHHHHHHHHHHHHhc Confidence 99999 99999999887754
##### No 36 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3B13_B Dedicator of cytokinesis protein 2; protein-ptotein complex, lymphocyte chemotaxis, signal; 3.006A {Homo sapiens} Probab=99.80 E-value=7.6e-24 Score=141.75 Aligned_cols=178 Identities=57% Similarity=0.984 Sum_probs=116.5 Template_Neff=12.500 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) .....++|+++|.+++|||+|++++..........++............+....+.+||++|.+.+...+..+...++++ T Consensus 6 ~~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 85 (184) T 3B13_B 6 SGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 85 (184) T ss_dssp --CEEEEEEEEECSTTCHHHHHHHHHTTCCTTCCCCCSSCCEEEEEECSSCEEEEEEEECCCSGGGTTTGGGGCTTCSEE T ss_pred cccceEEEEEECCCCCChHHHHHHHhcCCCCCCccCcceeeeEEEEEECCEEEEEEEEeCCCCcchHHhhhhhCCCCCEE Confidence 34668899999999999999999988765543333222222222223334556788999999888777777788889999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|++.+...++......+...+.......|+++++||.|+.........................++.......++.+| T Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 165 (184) T 3B13_B 86 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 165 (184) T ss_dssp EEEEETTCHHHHHHCCCCCHHHHHHHCSSSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC T ss_pred EEEeeCCChHHHHHHHHhchHHHHHHCCCCCEEEEEcCcccCCChHHHHHHHHcCCCCCCHHHHHHHHHHhCCceEEEee Confidence 99999998776666544455444433346899999999998764322111111111111112222233333335688999 Q sequence1 164 AKTKDGVREVFEMATRAA 181 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~ 181 (184) +.++.|+.++++++.+.+ T Consensus 166 ~~~~~~i~~~~~~i~~~~ 183 (184) T 3B13_B 166 ALTQRGLKTVFDEAIRAV 183 (184) T ss_dssp TTTCTTHHHHHHHHHHHH T ss_pred CCCcccHHHHHHHHHHHh Confidence 999999999999887765
##### No 37 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5UB8_A Likely rab family GTP-binding protein; G-PROTEIN, RAB, GDP, P-LOOP, GTPASE; HET: GDP; 2.35A {Candida albicans (strain SC5314 / ATCC MYA-2876)} Probab=99.80 E-value=8.2e-24 Score=147.32 Aligned_cols=164 Identities=29% Similarity=0.412 Sum_probs=109.7 Template_Neff=10.500 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ....+|+++|+.++|||+|++++....+.....++....+ ...+..++....+.+||++|+..+...+..++..+++++ T Consensus 13 ~~~~~i~v~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 92 (222) T 5UB8_A 13 EYLYKIVLIGDSGVGKSNLLSRFTRDEFNLESRSTIGVEFATRTLEIDGKRVKAQIWDTAGQERYRAITSAYYRGAVGAL 92 (222) T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHSCCCCCC-----CCCEEEEEEEETTEEEEEEEECCCSGGGTSCCCHHHHTTCSEEE T ss_pred cceEEEEEECCCCCCHHHHHHHHcCCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCcHHhHHhhHHHcCCCcEEE Confidence 4568999999999999999999987665433322222111 122233444567889999998888777777788899999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) +|+|+++..++..+..++..+........|+++|+||.|+...... ...++..++...+ ..++++|| T Consensus 93 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~vvlvgnK~D~~~~~~v------------~~~~~~~~~~~~~-~~~~e~sa 159 (222) T 5UB8_A 93 IVYDIAKTESYESVSRWLKELKEHADANIIIELVGNKSDLDHLRAV------------PTEEAKNFAMENN-LLFTEASA 159 (222) T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS------------CHHHHHHHHHHTT-CEEEECBT T ss_pred EEecCCCChhHHHHHHHHHHHHHHCCCCCEEEEEEechhhhhccCC------------CHHHHHHHHHHCC-CEEEEeeC Confidence 9999998777776644333332222236789999999998542211 1111222222222 56889999 Q sequence1 165 KTKDGVREVFEMATRAAL 182 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~~ 182 (184) .++.++.++|.++...+. T Consensus 160 ~~~~~v~~~f~~l~~~~~ 177 (222) T 5UB8_A 160 LSSDNVDLSFHQLLKNIY 177 (222) T ss_dssp TTTBTHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHH Confidence 999999999988877654
##### No 38 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5DIS_B Exportin-1, GTP-binding nuclear protein Ran; FG-repeats, Nucleoporin, Nup214, Exportin, transport; HET: GTP, GLC, PRO; 2.85A {Homo sapiens} Probab=99.80 E-value=8.3e-24 Score=141.46 Aligned_cols=161 Identities=27% Similarity=0.481 Sum_probs=109.1 Template_Neff=11.100 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) ..++|+++|..++|||||++++..........++....+ ......+.....+.+||++|++.+...+..++..++++++ T Consensus 2 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 81 (172) T 5DIS_B 2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAII 81 (172) T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTGGGGGTTCCEEEE T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcccccccceeEEEEEEEeCCceEEEEEEeCCCchhhhhhchhhccCCCEEEE Confidence 467999999999999999999876654332222211111 1111222345678999999988777777777889999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184) |+|+++..++.....++..... .....|+++++||.|+........ ...+... ....++++|++ T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~i~v~nK~Dl~~~~~~~~--------------~~~~~~~-~~~~~~~~Sa~ 145 (172) T 5DIS_B 82 MFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKVKAK--------------SIVFHRK-KNLQYYDISAK 145 (172) T ss_dssp EEETTCHHHHHTHHHHHHHHHH-HCSSCCEEEEEECTTSSSCSSCGG--------------GCCHHHH-HTCEEEECCTT T ss_pred EEeCCCHHHHhcHHHHHHHHHH-HcCCCCEEEEEechhhcccccchh--------------HHHHHHH-cCCcEEEccCC Confidence 9999987777666444333322 224689999999999975321100 0001111 22578899999 Q sequence1 166 TKDGVREVFEMATRAALQ 183 (184) Q Consensus 166 ~~~~i~~~~~~~~~~~~~ 183 (184) ++.|+.++|+++.+.+.. T Consensus 146 ~~~~i~~~f~~l~~~~~~ 163 (172) T 5DIS_B 146 SNYNFEKPFLWLARKLIG 163 (172) T ss_dssp TCTTCSHHHHHHHHHHHC T ss_pred cCCChHHHHHHHHHHHhc Confidence 999999999999887754
##### No 39 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6P0I_B Ras-related protein Ral-A; Ral GTPase, RalA, covalent inhibitor; HET: NL7, GOL, GDP, EDO; 1.18A {Homo sapiens} Probab=99.80 E-value=8.5e-24 Score=143.12 Aligned_cols=167 Identities=32% Similarity=0.480 Sum_probs=112.6 Template_Neff=11.100 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ......+|+++|.+++|||||++++..........++.................+.+||++|...+...+..++..+|++ T Consensus 10 ~~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (186) T 6P0I_B 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (186) T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCCCCHHHHHHHHHHCSEE T ss_pred CCCccEEEEEECCCCCCHHHHHHHHhcCCCcccCCCCcceeEEEEEEECCEEEEEEEEeCCCccchHHHHHHhhccCCEE Confidence 45667899999999999999999998665443322222222222223334456789999999988888888888899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) ++|+++.+..++......+...... .....|+++++||+|+....... ........... ...++.+ T Consensus 90 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nk~D~~~~~~~~------------~~~~~~~~~~~-~~~~~~~ 156 (186) T 6P0I_B 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS------------VEEAKNRAEQW-NVNYVET 156 (186) T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTSSEEEEEECTTCGGGCCSC------------HHHHHHHHHHH-TCEEEEE T ss_pred EEEEeCCChHHHHHHHHHHHHHHhhccCCCCcEEEEEEcccCCCcccCC------------HHHHHHHHHHh-CCEEEEE Confidence 9999999876665543333333221 12368999999999987532110 00011111111 2568899 Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184) |++++.|+.++|+++.+.+.+ T Consensus 157 Sa~~~~~i~~~~~~l~~~~~~ 177 (186) T 6P0I_B 157 SAKTRANVDKVFFDLMREIRA 177 (186) T ss_dssp CTTTCTTHHHHHHHHHHHHHH T ss_pred ecCCCcCHHHHHHHHHHHHHH Confidence 999999999999999887754
##### No 40 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1Z0F_A RAB14, member RAS oncogene family; Rab GTPase, Rab14, Vesicular trafficking; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 Probab=99.80 E-value=9.1e-24 Score=141.56 Aligned_cols=167 Identities=29% Similarity=0.443 Sum_probs=113.7 Template_Neff=11.800 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) ......+|+++|..++|||+|++++....+.....++....+ ............+.+||++|++.+...+..++..+++ T Consensus 11 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 90 (179) T 1Z0F_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179) T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE T ss_pred cccCeEEEEEEcCCCCCHHHHHHHHhCCCccCCCCCceeEEEEEEEEEECCeEEEEEEEeCCCChhhHHhcHHHhCCCCE Confidence 346678999999999999999999987765433322221111 1122233345678999999998888888888889999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++|+|+++..++......+...........|+++++||.|+....... .......+... ...++++ T Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~~k~d~~~~~~~~------------~~~~~~~~~~~-~~~~~~~ 157 (179) T 1Z0F_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT------------YEEAKQFAEEN-GLLFLEA 157 (179) T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHT-TCEEEEC T ss_pred EEEEEcCCCHHHHHhHHHHHHHHHHhCCCCCEEEEEEehhhchhcCCCC------------HHHHHHHHHHc-CCEEEEe Confidence 9999999987666655443333332223468999999999986532110 00111111222 2568899 Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184) |+.++.|+.++|.++++.+++ T Consensus 158 S~~~~~~i~~~~~~l~~~~~~ 178 (179) T 1Z0F_A 158 SAKTGENVEDAFLEAAKKIYQ 178 (179) T ss_dssp CTTTCTTHHHHHHHHHHHHC- T ss_pred eCCCCCCHHHHHHHHHHHHHc Confidence 999999999999999887764
##### No 41 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1MH1_A RAC1, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER; GTP-BINDING, GTPASE, SMALL G-PROTEIN, RHO; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 Probab=99.80 E-value=9.7e-24 Score=141.05 Aligned_cols=178 Identities=58% Similarity=1.002 Sum_probs=118.7 Template_Neff=12.800 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) ...++|+++|..++|||||++++..........++...........++....+.+||++|.+.+...+..++..++++++ T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (186) T 1MH1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186) T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEECCEEEEEEEEeCCCCcchHhHHHHhcCCCCEEEE Confidence 46789999999999999999999876554333322222222222333445678899999988887777778889999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184) |+++++..++......+...+.......|+++++||.|+.........................++...+...++.+|++ T Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 162 (186) T 1MH1_A 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 162 (186) T ss_dssp EEETTCHHHHHHCCCCCHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEechhhcCChHHHHHHHhCCCCCCCHHHHHHHHHHhCCCeEEEeeCC Confidence 99999877666654455555544434689999999999876432211111111111112222223333333678899999 Q sequence1 166 TKDGVREVFEMATRAALQ 183 (184) Q Consensus 166 ~~~~i~~~~~~~~~~~~~ 183 (184) ++.|+.+++.++.+.+.. T Consensus 163 ~~~~i~~~~~~l~~~~~~ 180 (186) T 1MH1_A 163 TQRGLKTVFDEAIRAVLC 180 (186) T ss_dssp TCTTHHHHHHHHHHHHSC T ss_pred CCcCHHHHHHHHHHHHhC Confidence 999999999998877643
##### No 42 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2GF0_C GTP-binding protein Di-Ras1; DIRAS, GDP/GTP binding, GTP hydrolysis; HET: GDP; 1.9A {Homo sapiens} SCOP: c.37.1.8 Probab=99.79 E-value=1.2e-23 Score=143.90 Aligned_cols=166 Identities=28% Similarity=0.437 Sum_probs=109.4 Template_Neff=11.000 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) +.....++|+++|.+++|||||++++....+.....++....+............+.+||++|++.+...+..++..+++ T Consensus 3 ~~~~~~~~I~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 82 (199) T 2GF0_C 3 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHA 82 (199) T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHCCCCSSCCCCCCCEEEEEEEETTEEEEEEEEECCCSSCCHHHHHHHHHHCSE T ss_pred CccCCcEEEEEECCCCCCHHHHHHHHhcCCCCcccCCCccceEEEEEEeCCEEEEEEEEeCCCCCcchHHHHHhcccCCE Confidence 44567799999999999999999999876654433332222222222223345678899999988887777777889999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKH--FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184) +++|+|+++..++......+...... .....|+++|+||.|+........ ....++.... ..++ T Consensus 83 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pvilv~nK~D~~~~~~~~~-------------~~~~~~~~~~-~~~~ 148 (199) T 2GF0_C 83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTR-------------EAQAVAQEWK-CAFM 148 (199) T ss_dssp EEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHH-------------HHHHHHHHHT-CEEE T ss_pred EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcccCCCCHH-------------HHHHHHHHhC-CeEE Confidence 99999999877776654433333221 123579999999999864211100 1111111222 5688 Q sequence1 161 ECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ++|++.+.|+.++|.++..... T Consensus 149 ~~s~~~~~~i~~l~~~l~~~~~ 170 (199) T 2GF0_C 149 ETSAKMNYNVKELFQELLTLET 170 (199) T ss_dssp ECBTTTTBSHHHHHHHHHHHCS T ss_pred EeccCcCCCHHHHHHHHHHHHH Confidence 9999999999999988876553
##### No 43 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3BWD_D Rac-like GTP-binding protein ARAC6; G domain, GTP-binding, Lipoprotein, Membrane; HET: GDP; 1.53A {Arabidopsis thaliana} Probab=99.79 E-value=1.3e-23 Score=140.78 Aligned_cols=179 Identities=49% Similarity=0.871 Sum_probs=110.6 Template_Neff=12.200 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) +......+|+++|.+++|||+|++++....+.....++............+....+.+||++|...+...+..++..+++ T Consensus 3 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 82 (182) T 3BWD_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (182) T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSE T ss_pred ccccceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCCceeeeEEEEEECCeEEEEEEEeCCCchhhHhchhhhcCCCCE Confidence 45567899999999999999999999876654333332222222233333445678999999988777777777888999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++|+|+.+..++......+...+.......|+++++||.|+......... ..............++...+...++++ T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~v~~k~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (182) T 3BWD_D 83 FILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFID--HPGAVPITTVQGEELKKLIGAPAYIEC 160 (182) T ss_dssp EEEEEETTCHHHHHHCCCCCHHHHHHHCTTCCEEEEEECHHHHTCHHHHHH--C--CCCCCHHHHHHHHHHHTCSEEEEC T ss_pred EEEEeeCCCHHHHHHHHHhhHHHHHHHCCCCCEEEEEeCcccCCCcccccc--CCCCCcccHHHHHHHHHHHCCCeEEEc Confidence 999999998777766644555555443346899999999998764321100 000000111222223333333568899 Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184) |++++.|+.++|+++.+.+++ T Consensus 161 S~~~~~~i~~~~~~l~~~~~~ 181 (182) T 3BWD_D 161 SSKSQENVKGVFDAAIRVVLQ 181 (182) T ss_dssp CTTTCTTHHHHHHHHHHHHSC T ss_pred cCCCcccHHHHHHHHHHHHhC Confidence 999999999999999988764
##### No 44 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4LHW_B Ras-related protein Rab-8A; Small GTPase, PROTEIN TRANSPORT; HET: GNP; 1.55A {Homo sapiens} Probab=99.79 E-value=1.3e-23 Score=140.55 Aligned_cols=166 Identities=30% Similarity=0.514 Sum_probs=112.2 Template_Neff=11.400 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ..+.++|+++|..++|||+|++++..........++..... ...+..+.....+.+||++|+..+...+..++..++++ T Consensus 3 ~~~~~~i~~~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 82 (174) T 4LHW_B 3 HDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 82 (174) T ss_dssp SCEEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHTSTTCSEE T ss_pred cceeEEEEEECCCCCCHHHHHHHHccCCCCcCCCceeEEEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCcEE Confidence 35678999999999999999999886654332222211111 11222223346789999999988887788888899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|+|+++..++......+...........|+++++||.|+....... ......++...+ +.++++| T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s 149 (174) T 4LHW_B 83 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVS------------KERGEKLALDYG-IKFMETS 149 (174) T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHHT-CEEEECB T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHCCCCCeEEEEEeccccCCcccCC------------HHHHHHHHHHhC-CeEEEee Confidence 999999987777666444444333223467899999999986532110 011111122222 4678899 Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184) ++++.++.++|.++.+.+.. T Consensus 150 ~~~~~~i~~~~~~l~~~~~~ 169 (174) T 4LHW_B 150 AKANINVENAFFTLARDIKA 169 (174) T ss_dssp TTTTBSHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHH Confidence 99999999999999887753
##### No 45 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2J1L_A RHO-RELATED GTP-BINDING PROTEIN RHOD (E.C.3.6.5.2); GTPASE, MEMBRANE, GTP-BINDING, PRENYLATION, HYDROLASE; HET: GDP; 2.5A {HOMO SAPIENS} Probab=99.79 E-value=1.4e-23 Score=144.89 Aligned_cols=179 Identities=51% Similarity=0.957 Sum_probs=104.6 Template_Neff=11.400 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ....++|+++|.+++|||+|++++..........+.............+....+.+||++|.+.+...+..++..+++++ T Consensus 31 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 110 (214) T 2J1L_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214) T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEE T ss_pred CceEEEEEEEcCCCCCHHHHHHHHhcCCCCcccCCCcceeEEEEEeECCEEEEEEEEeCCCCcchHhhhhhhCCCCcEEE Confidence 45678999999999999999999986654332222221222222233344567899999998888777777888899999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) +|+|..+..++......+...+.......|+++++||.|+.........................++...+...++++|+ T Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 190 (214) T 2J1L_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA 190 (214) T ss_dssp EEEETTCHHHHHHCCCCCHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT T ss_pred EEeeCCChHhHHHHHHccHHHHHHHCCCCCEEEEEechhhcCCHHHHHHHHhCCCCccCHHHHHHHHHHhCCcEEEEecC Confidence 99999987777666555555554444578999999999987654322222111111111222223333333367899999 Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184) +++.++.+++.++.+.+.+ T Consensus 191 ~~~~~i~~l~~~l~~~~~~ 209 (214) T 2J1L_A 191 RLHDNVHAVFQEAAEVALS 209 (214) T ss_dssp TTTBSHHHHHHHHHHHHHH T ss_pred CCCccHHHHHHHHHHHHHh Confidence 9999999999999887754
##### No 46 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2J0V_B RAC-LIKE GTP-BINDING PROTEIN ARAC7; NUCLEOTIDE-BINDING PROTEIN, ROP9, ATRAC7, MEMBRANE; HET: GDP; 1.78A {ARABIDOPSIS THALIANA} Probab=99.79 E-value=1.4e-23 Score=144.32 Aligned_cols=177 Identities=48% Similarity=0.878 Sum_probs=120.6 Template_Neff=11.800 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) +...+.++|+++|.+++|||||++++..........++............+....+.+||++|.+.+...+..++..+|+ T Consensus 4 ~~~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 83 (212) T 2J0V_B 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI 83 (212) T ss_dssp CCEEEEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEEETTEEEEEEEECCCCCSCCSSCCCGGGTTCSE T ss_pred ccccceEEEEEECCCCCCcHHHHHHHhcCCCCCCCCCCcccccEEEEEECCeEEEEEEEeCCCCcchhhcchhhcCCCCE Confidence 45677899999999999999999999876654433332222222222333445678999999988887777778889999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++|+|+.+..++......|...+.......|+++|+||.|+...........+ .........++...+...++++ T Consensus 84 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 159 (212) T 2J0V_B 84 FVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTN----VITSTQGEELRKQIGAAAYIEC 159 (212) T ss_dssp EEEEEETTCHHHHHHCCCCCHHHHHHHSTTCCEEEEEECHHHHTCHHHHHTTCS----CCCHHHHHHHHHHHTCSEEEEC T ss_pred EEEEeeCCCHHHHHHHHHHhHHHHHHHCCCCCEEEEEeccccCCCCccccccCc----eecHHHHHHHHHHhCCcEEEEc Confidence 999999998777766545555555443346899999999998764321110000 0111222233333333568899 Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184) |+.++.++.++|.++.+.++. T Consensus 160 s~~~~~~v~~~~~~l~~~~~~ 180 (212) T 2J0V_B 160 SSKTQQNVKAVFDTAIKVVLQ 180 (212) T ss_dssp CTTTCTTHHHHHHHHHHHHHS T ss_pred CCCCCccHHHHHHHHHHHHhC Confidence 999999999999998877653
##### No 47 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3RAP_R G PROTEIN RAP2A; G PROTEIN, RAS, GTPASE, RAP2; HET: GTP; 2.2A {Homo sapiens} SCOP: c.37.1.8 Probab=99.79 E-value=1.5e-23 Score=138.39 Aligned_cols=165 Identities=33% Similarity=0.495 Sum_probs=111.6 Template_Neff=12.400 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC 86 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (184) +.++|+++|.+|+|||||++++..........++.................+.+||++|.+.+...+..++..++++++| T Consensus 2 ~~~~i~v~G~~~~GKstl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (167) T 3RAP_R 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167) T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCSCEEEEEEEEETTEEEEEEEEECCCSSTTGGGHHHHHHHCSEEEEE T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCcccccCCChhheEEEEEEeCCeeEEEEEEECCCChhhHHHHHHHhhcCCEEEEE Confidence 46899999999999999999888665433222222122222223334456789999999988877777788899999999 Q sequence1 87 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184) Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184) ++..++.++......+....... ....|+++++||.|+....... ......+....+ ..++.+|++ T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s~~ 148 (167) T 3RAP_R 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVS------------SSEGRALAEEWG-CPFMETSAK 148 (167) T ss_dssp EETTCHHHHHHHTTHHHHHHHHHCCSCCCEEEEEECGGGGGGCCSC------------HHHHHHHHHHHT-SCEEEECTT T ss_pred EeCCCHHHHHhHHHHHHHHHHhcccCCCCEEEEEeccCCccccccC------------HHHHHHHHHHHC-CCEEEccCC Confidence 99998766665544333333221 1367899999999987532110 011111111222 568899999 Q sequence1 166 TKDGVREVFEMATRAALQA 184 (184) Q Consensus 166 ~~~~i~~~~~~~~~~~~~~ 184 (184) ++.++.++++++.+.+..+ T Consensus 149 ~~~~i~~~~~~l~~~i~~~ 167 (167) T 3RAP_R 149 SKTMVDELFAEIVRQMNYA 167 (167) T ss_dssp CHHHHHHHHHHHHHHHHCC T ss_pred CchhHHHHHHHHHHHHhcC Confidence 9999999999999887653
##### No 48 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2KE5_A Ras-related protein Ral-B; Ral, Cancer, Signalling, G protein; HET: MG, GNP; NMR {Homo sapiens} Probab=99.79 E-value=1.5e-23 Score=140.01 Aligned_cols=164 Identities=33% Similarity=0.510 Sum_probs=112.1 Template_Neff=11.700 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC 86 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (184) +..+|+++|++++|||||++++....+.....++....+......+.....+.+||++|...+...+..+...+|+++++ T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (174) T 2KE5_A 2 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLV 81 (174) T ss_dssp CEEEEEEEESSSSCHHHHHHHHHHSCCCCCCCCCSSCCEEEEEECSSCEEEEEEEECCCTTSSSSHHHHHHHTCSEEEEE T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEECCEEEEEEEEeCCCCcchHHHHHHHhccCCEEEEE Confidence 35789999999999999999998766544333332222333333444456889999999988877777788899999999 Q sequence1 87 FSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) +++++..++......+....... ....|+++++||+|+....... ...........+ +.++.+|+ T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~~sa 148 (174) T 2KE5_A 82 FSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVP------------VEEARSKAEEWG-VQYVETSA 148 (174) T ss_dssp EESSCHHHHHHHHHHHHHHHHHTSSCSCCCEEEEEECTTCTTSCCSC------------HHHHHHHHHTTT-CCEEECCT T ss_pred EECCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEeCCCcccccCCC------------HHHHHHHHHHhC-CCEEEEec Confidence 99998776666544333333211 2368999999999987632110 011111112222 56889999 Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184) .++.++.++|+++.+.+.+ T Consensus 149 ~~~~~i~~~~~~i~~~~~~ 167 (174) T 2KE5_A 149 KTRANVDKVFFDLMREIRT 167 (174) T ss_dssp TTTSSHHHHHHHHHHHCCC T ss_pred CCCcCHHHHHHHHHHHHHh Confidence 9999999999998887643
##### No 49 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6FF8_A Ras-related protein Rab-32; small GTPase, Rab, GTP, vesicle; HET: GTP; 2.13A {Homo sapiens} Probab=99.79 E-value=1.8e-23 Score=140.71 Aligned_cols=169 Identities=22% Similarity=0.349 Sum_probs=109.9 Template_Neff=11.400 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDG-KQVELALWDTAGLEDYDRLRPLSYPDT 80 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~-~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~ 80 (184) ......++|+++|++++|||||++++....+.....++....+.. ...... ....+.+||++|++.+...+..++..+ T Consensus 3 ~~~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 82 (181) T 6FF8_A 3 ETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGLERFGNMTRVYYKEA 82 (181) T ss_dssp CCEEEEEEEEEEESTTSSHHHHHHHHHHCCCCSSCCCCCSEEEEEEEEEEETTEEEEEEEEEECGGGGGSSCHHHHHTTC T ss_pred hccceeEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCceEEEEEEEEEEecCCcEEEEEEEcCCCCHHHHHHHHHHhcCC Confidence 345677899999999999999999998775543333322222111 111111 235788999999988888888888899 Q sequence1 81 DVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184) Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184) |++++|+|+++..++......+....... ....|+++++||.|+....... ......++...+. T Consensus 83 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~nk~D~~~~~~~~------------~~~~~~~~~~~~~ 150 (181) T 6FF8_A 83 VGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLANKCDQNKDSSQS------------PSQVDQFCKEHGF 150 (181) T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCBCTTSSBCCEEEEEECTTC----CCC------------HHHHHHHHHHHTC T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEecccCccccCCC------------HHHHHHHHHHhCC Confidence 99999999998766655433332222111 1257899999999987532110 0111112222223 Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) ..++++|+.++.|+.++|+++...+.+ T Consensus 151 ~~~~~~s~~~~~~i~~~~~~l~~~~~~ 177 (181) T 6FF8_A 151 AGWFETSAKDNINIEEAARFLVEKILV 177 (181) T ss_dssp SEEEEEBTTTTBSHHHHHHHHHHHHHH T ss_pred CCEEEeeCCCCCCHHHHHHHHHHHHHH Confidence 568899999999999999999887653
##### No 50 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1D5C_A RAB6 GTPASE; G-PROTEIN, GTPASE, RAB, RAB6, VESICULAR; HET: MSE, GDP; 2.3A {Plasmodium falciparum} SCOP: c.37.1.8 Probab=99.79 E-value=1.9e-23 Score=137.73 Aligned_cols=160 Identities=29% Similarity=0.403 Sum_probs=107.8 Template_Neff=12.000 Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC 86 (184) Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (184) +.+++++|++++|||+|++++..........++.... ........+....+.+||++|+..+...+..++..++++++| T Consensus 1 ~~~i~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 80 (162) T 1D5C_A 1 KYKLVFLGEQAVGKTSIITRFMYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVV 80 (162) T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCCCEEEEEEEEETTEEEEEEEEECCCSGGGGGGHHHHHTTCSEEEEE T ss_pred CeEEEEECCCCCCHHHHHHHHhhCCCCCCccceeeeEEEEEEEEeCCeEEEEEEEeCCCcHHHHHhchhhcccCCEEEEE Confidence 3689999999999999999998765433222221111 111222233446788999999987777788888899999999 Q sequence1 87 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 166 (184) Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 166 (184) +|+++..++......+...........|+++++||+|+....... ........... ...++.+|+.+ T Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~k~D~~~~~~~~------------~~~~~~~~~~~-~~~~~~~s~~~ 147 (162) T 1D5C_A 81 YDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVT------------YEEGMQKAQEY-NTMFHETSAKA 147 (162) T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSC------------HHHHHHHHHHT-TCEEEECBTTT T ss_pred EeCCChHHHHHHHHHHHHHHHHcCCCcEEEEEEeCcccchhccCC------------HHHHHHHHHHh-CCeEEEcccCC Confidence 999987666665444444443323468999999999996532110 01111111122 25688999999 Q sequence1 167 KDGVREVFEMATRA 180 (184) Q Consensus 167 ~~~i~~~~~~~~~~ 180 (184) +.++.++|+++.+. T Consensus 148 ~~~i~~~~~~l~~~ 161 (162) T 1D5C_A 148 GHNIKVLFKKTASK 161 (162) T ss_dssp TBSCHHHHHHHHHC T ss_pred CCCHHHHHHHHHhc Confidence 99999999887654
##### No 51 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6L6O_A Rab5a; Intracellular trafficking, GTPase, ENDOCYTOSIS; HET: GDP; 1.8A {Leishmania donovani} Probab=99.79 E-value=2.1e-23 Score=139.15 Aligned_cols=165 Identities=26% Similarity=0.440 Sum_probs=110.5 Template_Neff=12.200 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) ......+|+++|.+++|||||++++..........++....+ .......+....+.+||++|...+...+..++..+++ T Consensus 11 ~~~~~~~v~i~G~~~sGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 90 (177) T 6L6O_A 11 MEATSAKIVMLGESGAGKSSIALRFTRNEFLANQETTIGAAFLSKTVMIDGRALKYEIWDTAGLERFRSLAPIYYRGASG 90 (177) T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCTTTSCSEEEEEEECSSSEEEEEEECCTTGGGGTCCCHHHHTTCSE T ss_pred cccceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCeeeEEeEEEEEEECCEEEEEEEEECCCcHHHHhhhHHHccCCCE Confidence 356778999999999999999999986654332222211111 1122233445678999999998887778788889999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++|+|+.+...+......+...........|+++++||.|+....... ......++.......++++ T Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~k~d~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 158 (177) T 6L6O_A 91 ALVVYDITNSESLKKAQTWIKELRANADPSLIIVLVGNKKDLGSLRQVS------------FEDGQRLAAEEQLAAFYEA 158 (177) T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHTTCSEEEEC T ss_pred EEEEEeCCChHHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCcccccccC------------HHHHHHHHHHcCcceeEEe Confidence 9999999987666665444443333323467899999999997532110 1111112222233578899 Q sequence1 163 SAKTKDGVREVFEMATRA 180 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~ 180 (184) |++++.|+.++|.++.+. T Consensus 159 s~~~~~~i~~~~~~l~~~ 176 (177) T 6L6O_A 159 SAKDNNNVEQVFLDLAAK 176 (177) T ss_dssp BTTTTBSHHHHHHHHHHH T ss_pred ecCCCCCHHHHHHHHHhh Confidence 999999999999988764
##### No 52 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1YU9_A GTP-binding protein; Rab GTPase, Rab4, vesicular trafficking; HET: GNP, SO4; 2.07A {Homo sapiens} SCOP: c.37.1.8 Probab=99.78 E-value=2.3e-23 Score=138.96 Aligned_cols=168 Identities=29% Similarity=0.402 Sum_probs=112.6 Template_Neff=12.000 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) +.....++|+++|.+++|||||++++....+.....++....+ ............+.+||++|.+.+...+..++..++ T Consensus 6 ~~~~~~~~i~v~G~~~~GKts~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 85 (175) T 1YU9_A 6 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAA 85 (175) T ss_dssp CCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGGTTCC T ss_pred ccccceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeEEEEEEEEEECCEEEEEEEEECCCCHHhHHhhHHHhccCC Confidence 3456778999999999999999999987655432222111111 112223344568899999998888777888888999 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184) ++++++|+++..++......+...........|+++++||.|+....... ......++... ...++. T Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~k~d~~~~~~~~------------~~~~~~~~~~~-~~~~~~ 152 (175) T 1YU9_A 86 GALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVT------------FLEASRFAQEN-ELMFLE 152 (175) T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHT-TCEEEE T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHHccCCCEEEEEEecccCcccCCCC------------HHHHHHHHHHC-CCEEEE Confidence 99999999987666555333322222222468999999999997632110 00011111122 256788 Q sequence1 162 CSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~~ 183 (184) +|+.++.++.++|+++.+.+++ T Consensus 153 ~s~~~~~~i~~~~~~l~~~~~~ 174 (175) T 1YU9_A 153 TSALTGEDVEEAFVQCARKILN 174 (175) T ss_dssp CCTTTCTTHHHHHHHHHHHHHC T ss_pred ccCCCCCCHHHHHHHHHHHHhc Confidence 9999999999999999887764
##### No 53 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4M8N_F PlexinC1 Intracellular Region, Ras-related protein; GTPase, GTPase activating protein, Rap; HET: GDP, AF3; 3.294A {Danio rerio} Probab=99.78 E-value=2.4e-23 Score=141.57 Aligned_cols=167 Identities=30% Similarity=0.480 Sum_probs=113.9 Template_Neff=12.000 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ..+.++|+++|.+++|||+|++++..........++...........+.....+.+||++|.+.+...+..++..+|+++ T Consensus 3 ~~~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 82 (199) T 4M8N_F 3 HMREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA 82 (199) T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHTCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCTTSSCCCHHHHHHHCSEEE T ss_pred CceeEEEEEECCCCCCHHHHHHHHHcCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE Confidence 45678999999999999999999987655443333322222223333445578899999998888777888888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) +|+|+.+..++......+....... ....|+++++||.|+....... ......++.......++.+| T Consensus 83 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~D~~~~~~~~------------~~~~~~~~~~~~~~~~~~~s 150 (199) T 4M8N_F 83 LVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVG------------KEQGQNLARQWNNCAFLESS 150 (199) T ss_dssp EEEESSSSHHHHTHHHHHHHHHHHHTCSCCCEEEEEECTTCGGGCCSC------------HHHHHHHHHHTTSCCBCCCB T ss_pred EEEeCCChHHHHHHHHHHHHHHhcCCCCCCcEEEEEcCccccccccCC------------HHHHHHHHHHhCCCcEEEEe Confidence 9999998766655543333333221 2368999999999986532110 11111222222236788999 Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184) +.++.++.++|.++.+.+.. T Consensus 151 ~~~~~~i~~~~~~l~~~~~~ 170 (199) T 4M8N_F 151 AKSKINVNEIFYDLVRQINS 170 (199) T ss_dssp TTTTBSHHHHHHHHHHHHHC T ss_pred CCCCCCHHHHHHHHHHHHHh Confidence 99999999999998877653
##### No 54 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4M8N_G PlexinC1 Intracellular Region, Ras-related protein; GTPase, GTPase activating protein, Rap; HET: AF3, GDP; 3.294A {Danio rerio} Probab=99.78 E-value=2.4e-23 Score=141.57 Aligned_cols=167 Identities=30% Similarity=0.480 Sum_probs=114.5 Template_Neff=12.000 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ..+.++|+++|.+++|||+|++++..........++...........+.....+.+||++|.+.+...+..++..+|+++ T Consensus 3 ~~~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 82 (199) T 4M8N_G 3 HMREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA 82 (199) T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHTCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCTTSSCCCTTHHHHHCSEEE T ss_pred CceeEEEEEECCCCCCHHHHHHHHHcCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE Confidence 45678999999999999999999987655443333322222223333445578899999998888777888888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) +|+|+.+..++......+....... ....|+++++||.|+....... ......++.......++.+| T Consensus 83 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~D~~~~~~~~------------~~~~~~~~~~~~~~~~~~~s 150 (199) T 4M8N_G 83 LVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVG------------KEQGQNLARQWNNCAFLESS 150 (199) T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSCCCBEEEEECCSCTTSCCSC------------HHHHHHHHHTTTSCEEECCB T ss_pred EEEeCCChHHHHHHHHHHHHHHhcCCCCCCcEEEEEcCccccccccCC------------HHHHHHHHHHhCCCcEEEEe Confidence 9999998766655543333333221 2368999999999986532110 11111222222236788999 Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184) +.++.++.++|.++.+.+.. T Consensus 151 ~~~~~~i~~~~~~l~~~~~~ 170 (199) T 4M8N_G 151 AKSKINVNEIFYDLVRQINS 170 (199) T ss_dssp TTTTBSTTHHHHHHHHHHTT T ss_pred CCCCCCHHHHHHHHHHHHHh Confidence 99999999999998877653
##### No 55 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2EW1_A Ras-related protein Rab-30; G-protein, RAB, GTP analogue, Structural; HET: GNP; 2.0A {Homo sapiens} SCOP: c.37.1.8 Probab=99.78 E-value=2.7e-23 Score=142.58 Aligned_cols=166 Identities=25% Similarity=0.459 Sum_probs=110.0 Template_Neff=10.700 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) .....++|+++|++++|||+|++++..........++....+ .......+....+.+||++|+..+...+..++..+++ T Consensus 22 ~~~~~~~i~~~G~~~~GKtsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 101 (201) T 2EW1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA 101 (201) T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCCccccccChhHhCCCCE Confidence 346678999999999999999999986654332222211111 1122233445678999999998887778888889999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++|+|+++..++......+...........|+++++||.|+......... ....+.... ...++.+ T Consensus 102 ii~v~d~s~~~~~~~~~~~l~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~------------~~~~~~~~~-~~~~~~~ 168 (201) T 2EW1_A 102 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQ------------RAEEFSEAQ-DMYYLET 168 (201) T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHH------------HHHHHHHHH-TCCEEEC T ss_pred EEEEEeCCCHHHHhhHHHHHHHHHHHCCCCCEEEEEEechhccccccCCHH------------HHHHHHHHc-CCEEEEe Confidence 999999998776655533333222222235788999999999753211000 000111111 2567899 Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184) |++++.++.++|.++...++ T Consensus 169 Sa~~~~~i~~~f~~l~~~~~ 188 (201) T 2EW1_A 169 SAKESDNVEKLFLDLACRLI 188 (201) T ss_dssp CTTTCTTHHHHHHHHHHHHH T ss_pred eCCCCCCHHHHHHHHHHHHH Confidence 99999999999998887664
##### No 56 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2FG5_A Ras-related protein Rab-31; G-PROTEIN, RAB, GTP ANALOGUE, Structural; HET: GNP; 2.801A {Homo sapiens} SCOP: c.37.1.8 Probab=99.78 E-value=3e-23 Score=141.38 Aligned_cols=166 Identities=25% Similarity=0.427 Sum_probs=109.7 Template_Neff=10.700 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) +...+.++++++|+.++|||+|++++..........++....+ ............+.+||++|+..+...+..++..++ T Consensus 18 ~~~~~~~~i~lvG~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 97 (192) T 2FG5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA 97 (192) T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS T ss_pred cccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCeEEEEEEEeCCCChhhHhhhHHHhcCCC Confidence 4567889999999999999999999987654332222211111 111112223467899999998888777888888999 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184) ++++|+|.++..++.... .|...+.. .....|+++++||.|+....... ......++.... ..++ T Consensus 98 ~~i~v~d~~~~~~~~~~~-~~l~~~~~~~~~~~~iilv~nK~D~~~~~~~~------------~~~~~~~~~~~~-~~~~ 163 (192) T 2FG5_A 98 AAVIVYDITKQDSFYTLK-KWVKELKEHGPENIVMAIAGNKCDLSDIREVP------------LKDAKEYAESIG-AIVV 163 (192) T ss_dssp EEEEEEETTCTHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC------------HHHHHHHHHTTT-CEEE T ss_pred EEEEEEeCCCHHHHHHHH-HHHHHHHHHCCCCCEEEEEEeCCCccccccCC------------HHHHHHHHHHhC-CEEE Confidence 999999999877766653 33333322 22467899999999986532110 011111111222 4678 Q sequence1 161 ECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ++|+.++.++.++|+++.+.+. T Consensus 164 ~~Sa~~~~~i~~~~~~l~~~~~ 185 (192) T 2FG5_A 164 ETSAKNAINIEELFQGISRQIP 185 (192) T ss_dssp ECBTTTTBSHHHHHHHHHHTCC T ss_pred EecCCCCCCHHHHHHHHHhhcc Confidence 9999999999999999887764
##### No 57 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4D0G_A RAS-RELATED PROTEIN RAB-14, RAB11 FAMILY-INTERACTING; HYDROLASE, RAB14 GTPASE, ENDOSOMAL TRAFFICKING; HET: GTP; 2.5A {HOMO SAPIENS} Probab=99.78 E-value=3e-23 Score=137.90 Aligned_cols=168 Identities=31% Similarity=0.472 Sum_probs=107.5 Template_Neff=12.400 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) |+.+..++|+++|.+++|||++++++.+..+.....++....+ ......+.....+.+||++|.+.+...+..++..++ T Consensus 1 ~~~~~~~~i~v~G~~~~GKss~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 80 (175) T 4D0G_A 1 MSYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGLERFRAVTRSYYRGAA 80 (175) T ss_dssp --CCSEEEEEEECSTTSSHHHH----HHHCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECCCCSCCTTHHHHHTTCS T ss_pred CCcceeEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcHHhHHHHHHHhcCCC Confidence 3557789999999999999999999987655433222211111 111222334567899999998877777888888899 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184) ++++++++.+..++......+...........|+++++||.|+....... ......+....+ ..+++ T Consensus 81 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~ 147 (175) T 4D0G_A 81 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT------------YEEAKQFAEENG-LLFLE 147 (175) T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHTT-CEEEE T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEecccCcccCCCC------------HHHHHHHHHHcC-CCEEE Confidence 99999999986665554333332222222467899999999987532110 111112222222 56899 Q sequence1 162 CSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~~ 183 (184) +|+.++.++.++|.++.+.+.. T Consensus 148 ~S~~~~~~i~~~~~~l~~~~~~ 169 (175) T 4D0G_A 148 ASAKTGENVEDAFLEAAKKIYQ 169 (175) T ss_dssp CCTTTCTTHHHHHHHHHHHHC- T ss_pred eeCCCCCCHHHHHHHHHHHHHH Confidence 9999999999999998877653
##### No 58 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3TKL_A Ras-related protein Rab-1A, LidA protein; Vesicle trafficking, PROTEIN TRANSPORT-PROTEIN BINDING; HET: GTP; 2.183A {Homo sapiens} Probab=99.78 E-value=3.2e-23 Score=141.31 Aligned_cols=165 Identities=28% Similarity=0.510 Sum_probs=105.4 Template_Neff=11.300 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) .....+|+++|.+++|||+|++++..........++....+ ......++....+.+||++|...+...+..++..++++ T Consensus 13 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~v 92 (196) T 3TKL_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196) T ss_dssp CSEEEEEEEECSTTSSHHHH---HHH--HHSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCCCcccCCceEEEEEEEEEEECCEEEEEEEEeCCCCHHhHHhHHHHccCCCEE Confidence 34568999999999999999999987654433222221111 11222333456788999999887777777788889999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|+|+++..++......+...........|+++++||+|+....... ......++.... +.++++| T Consensus 93 i~v~d~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nk~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s 159 (196) T 3TKL_A 93 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVD------------YTTAKEFADSLG-IPFLETS 159 (196) T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC------------HHHHHHHHHHTT-CCEEEEC T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEeCcCCCCcccCC------------HHHHHHHHHHhC-CCEEEee Confidence 999999987766655433332222223468899999999986532110 001111122222 5688999 Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184) ++++.++.++|.++...+. T Consensus 160 a~~~~~v~~~~~~l~~~~~ 178 (196) T 3TKL_A 160 AKNATNVEQSFMTMAAEIK 178 (196) T ss_dssp TTTCTTHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHH Confidence 9999999999998887654
##### No 59 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1R2Q_A Ras-related protein Rab-5A; RAB, GTPase, GNP, atomic resolution; HET: GOL, GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 Probab=99.78 E-value=3.2e-23 Score=137.28 Aligned_cols=165 Identities=29% Similarity=0.458 Sum_probs=110.2 Template_Neff=12.300 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) .....+|+++|++|+|||+|++++..........+.....+ ............+.+||++|+..+...+..+...++++ T Consensus 3 ~~~~~~i~~~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 82 (170) T 1R2Q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170) T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE T ss_pred ccceEEEEEECCCCCCchHHHHHHhcCCCCCCCCceeeeEEEEEEEEeCCEEEEEEEEeCCCCccchhcchhhccCCCEE Confidence 35678999999999999999999987654432222211111 11122233456789999999988877777778889999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|+|+++..++......+...........|+++++||.|+........ .....++.. ....++++| T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~k~d~~~~~~~~~------------~~~~~~~~~-~~~~~~~~s 149 (170) T 1R2Q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDF------------QEAQSYADD-NSLLFMETS 149 (170) T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH------------HHHHHHHHH-TTCEEEECC T ss_pred EEEeeCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEehhhccccccCCH------------HHHHHHHHH-CCCeEEEEe Confidence 9999999876666554333333332234678899999999865321100 011111112 225788999 Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184) +.++.|+.++++++.+.+. T Consensus 150 ~~~~~~i~~~~~~l~~~~~ 168 (170) T 1R2Q_A 150 AKTSMNVNEIFMAIAKKLP 168 (170) T ss_dssp TTTCTTHHHHHHHHHHTSC T ss_pred CCCCCCHHHHHHHHHHhhh Confidence 9999999999998887664
##### No 60 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2WWX_A RAS-RELATED PROTEIN RAB-1, DRRA; GOLGI APPARATUS, PROTEIN TRANSPORT, ER-GOLGI; 1.5A {HOMO SAPIENS} Probab=99.78 E-value=3.3e-23 Score=138.37 Aligned_cols=167 Identities=27% Similarity=0.484 Sum_probs=111.7 Template_Neff=11.800 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) +...+..+|+++|.+++|||++++++..........++....+ ......++....+.+||++|.+.+...+..++.+++ T Consensus 3 ~~~~~~~~i~~~G~~~~GKs~li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 82 (175) T 2WWX_A 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (175) T ss_dssp --CCEEEEEEEECCTTSSHHHHHTTSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTGGGCCSCCGGGTSSCS T ss_pred ccccceeEEEEECCCCCCHHHHHHHHcCCCCCccccccceeEEEEEEEEECCEEEEEEEEeCCCchhhHHhchHHhcCCC Confidence 3456789999999999999999999886654332222211111 112222334567899999998887777777888999 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184) ++++|+|+++..++.....++...........|+++++||.|+....... ......++.... ..+++ T Consensus 83 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~k~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~ 149 (175) T 2WWX_A 83 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTKKVVD------------YTTAKEFADSLG-IPFLE 149 (175) T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEEECCTTSCCCSC------------HHHHHHHHHHHT-CCEEE T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHHccCCCeEEEEEeCccccCCccCC------------HHHHHHHHHHhC-CCEEE Confidence 99999999987776665433333322223468899999999986532110 011111222222 56899 Q sequence1 162 CSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~ 182 (184) +|+.++.++.++|.++.+.+. T Consensus 150 ~s~~~~~~i~~~~~~l~~~~~ 170 (175) T 2WWX_A 150 TSAKNATNVEQSFMTMAAEIK 170 (175) T ss_dssp EETTBCHHHHHHHHHHHHHHH T ss_pred eeCCCCCCHHHHHHHHHHHHH Confidence 999999999999999887664
##### No 61 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1KY3_A GTP-BINDING PROTEIN YPT7P; G PROTEIN, VESICULAR TRAFFIC, GTP; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Probab=99.78 E-value=3.3e-23 Score=138.65 Aligned_cols=169 Identities=27% Similarity=0.459 Sum_probs=98.7 Template_Neff=12.300 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDG-KQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) ...+.++|+++|++++|||||++++..........++..... .......+ ....+.+||++|+..+...+..++..++ T Consensus 4 ~~~~~~~i~v~G~~~~GKstl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 83 (182) T 1KY3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182) T ss_dssp ---CEEEEE--CCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCCC---C-------STTCC T ss_pred cCceeEEEEEECCCCCCHHHHHHHHhCCCCCccCCCceEEEEEEEEEEECCCeEEEEEEEECCCCHHhHHhHHHHhcCCC Confidence 345678999999999999999999987654432222211111 11112221 2347889999998887777878888999 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184) ++++|+|+.+..++......+....... ....|+++++||+|+....... ........+...... T Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~nK~D~~~~~~~~-----------~~~~~~~~~~~~~~~ 152 (182) T 1KY3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIV-----------SEKSAQELAKSLGDI 152 (182) T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCC----SCTTEE-EECTTSCGGGCCS-----------CHHHHHHHHHHTTSC T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHHccCCCCCCCCEEEEEECcCCcccccCC-----------CHHHHHHHHHHhCCC Confidence 9999999998766665543333332221 1368999999999986532210 011111222233336 Q sequence1 158 GYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) .++++|++++.|+.++|.++.+.+.+ T Consensus 153 ~~~~~S~~~~~~i~~~~~~l~~~~~~ 178 (182) T 1KY3_A 153 PLFLTSAKNAINVDTAFEEIARSALQ 178 (182) T ss_dssp CEEEEBTTTTBSHHHHHHHHHHHHHH T ss_pred CEEEeeCCCCCCHHHHHHHHHHHHHH Confidence 78999999999999999999887764
##### No 62 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3KKQ_A Ras-related protein M-Ras; GTP-binding, GTPase, SIGNALING PROTEIN; HET: GDP; 1.2A {Mus musculus} Probab=99.78 E-value=3.5e-23 Score=140.00 Aligned_cols=166 Identities=30% Similarity=0.438 Sum_probs=112.6 Template_Neff=10.700 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ..+.++|+++|+.++|||||++++....+.....++....+.......+....+.+||++|++.+...+..++..+++++ T Consensus 15 ~~~~~~I~ivG~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 94 (183) T 3KKQ_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183) T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCcccCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHHhhCCEEE Confidence 45678999999999999999999986655433333222222222233334557889999999888877878888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) +|+|++++.++......+....... ....|+++++||.|+...... ........+...+ +.++++| T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilv~~k~D~~~~~~~------------~~~~~~~~~~~~~-~~~~~~s 161 (183) T 3KKQ_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKV------------TRDQGKEMATKYN-IPYIETS 161 (183) T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCS------------CHHHHHHHHHHHT-CCEEEEB T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCchhccCcee------------cHHHHHHHHHHhC-CCEEEEe Confidence 9999998776655433332222211 136789999999999753211 0111112222223 5689999 Q sequence1 164 AKTK-DGVREVFEMATRAALQ 183 (184) Q Consensus 164 ~~~~-~~i~~~~~~~~~~~~~ 183 (184) +.++ .++.++|+++.+.+++ T Consensus 162 ~~~~~~~~~~~f~~l~~~~~~ 182 (183) T 3KKQ_A 162 AKDPPLNVDKTFHDLVRVIRQ 182 (183) T ss_dssp CSSSCBSHHHHHHHHHHHHHH T ss_pred cCCCCCCHHHHHHHHHHHHHh Confidence 9997 7999999999888765
##### No 63 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3SFV_A Ras-related protein Rab-1A, LidA protein; LidA-Rab Complex, Coiled-coil domain, Type; HET: GDP; 1.73A {Homo sapiens} Probab=99.78 E-value=3.6e-23 Score=139.41 Aligned_cols=166 Identities=28% Similarity=0.508 Sum_probs=111.2 Template_Neff=11.200 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ....++|+++|.+++|||+|++++..........++....+ .......+....+.+||++|...+...+..++..++++ T Consensus 13 ~~~~~~i~l~G~~~~GKst~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 92 (181) T 3SFV_A 13 YDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (181) T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHCCCCSSCCCCSSCEEEEEEEEETTEEEEEEEEECCCSGGGCTTHHHHTTTCCEE T ss_pred ccceEEEEEECCCCCChHHHHHHHhcCCCChhhcccceeEEEEEEEEECCEEEEEEEEeCCCChHhhHhcHHHhcCCcEE Confidence 35568999999999999999999986654332222111111 11222234456889999999888777788888899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|+|+++..++......+...........|+++++||+|+....... ......++...+ ..++.+| T Consensus 93 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~k~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s 159 (181) T 3SFV_A 93 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVD------------YTTAKEFADSLG-IPFLETS 159 (181) T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHHT-CCEEECC T ss_pred EEEEcCCCHHHHHHHHHHHHHHHHHccCCCeEEEEEeCcccCCCCCCC------------HHHHHHHHHHhC-CCEEEee Confidence 999999987766655433332222223467899999999986532110 011111222222 5688999 Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184) ++++.|+.++|.++...+.. T Consensus 160 ~~~~~~i~~~~~~l~~~~~~ 179 (181) T 3SFV_A 160 AKNATNVEQSFMTMAAEIKK 179 (181) T ss_dssp TTTCTTHHHHHHHHHHHHHT T ss_pred CCCCCCHHHHHHHHHHHHHh Confidence 99999999999999877653
##### No 64 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1KY2_A GTP-BINDING PROTEIN YPT7P; G PROTEIN, VESICULAR TRAFFIC, GTP; HET: GNP; 1.6A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Probab=99.78 E-value=3.7e-23 Score=138.47 Aligned_cols=169 Identities=27% Similarity=0.459 Sum_probs=112.4 Template_Neff=12.300 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDG-KQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) ...+.++|+++|++++|||||++++..........++..... .......+ ....+.+||++|+..+...+..+...++ T Consensus 4 ~~~~~~~i~v~G~~~~GKstl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 83 (182) T 1KY2_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182) T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHSCCCSCCCCCCSEEEEEEEEEETTTEEEEEEEEEECCSGGGCTTTTGGGTTCS T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhCCCCCccccceEEEEEEEEEEEeCCCeEEEEEEEECCCcHHHHHhHHHHhcCCC Confidence 345678999999999999999999987654432222211111 11112221 2347889999998887777878888999 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184) ++++|+|+.+..++......+....... ....|+++++||+|+....... ........+...... T Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~nK~D~~~~~~~~-----------~~~~~~~~~~~~~~~ 152 (182) T 1KY2_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIV-----------SEKSAQELAKSLGDI 152 (182) T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCCSCTTTSCEEEEEECTTSCTTTCCS-----------CHHHHHHHHHHTTSC T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCChhhhcccC-----------CHHHHHHHHHHhCCC Confidence 9999999998766665543333332221 1368999999999986532210 011111222333336 Q sequence1 158 GYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) .++++|++++.|+.++|.++.+.+.+ T Consensus 153 ~~~~~S~~~~~~i~~~~~~l~~~~~~ 178 (182) T 1KY2_A 153 PLFLTSAKNAINVDTAFEEIARSALQ 178 (182) T ss_dssp CEEEEBTTTTBSHHHHHHHHHHHHHH T ss_pred CEEEeecCCCCCHHHHHHHHHHHHHH Confidence 78999999999999999999887764
##### No 65 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >7BTD_A GTP-binding protein Rheb; mTORC1, small GTPase, Rheb, SIGNALING; HET: GNP; 2.0A {Homo sapiens} Probab=99.78 E-value=3.8e-23 Score=137.68 Aligned_cols=166 Identities=29% Similarity=0.393 Sum_probs=112.4 Template_Neff=12.400 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ...+..+|+++|.+++|||||++++..........++...........++....+.+||++|.+.+...+..++..+|++ T Consensus 2 ~~~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 81 (177) T 7BTD_A 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSNDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (177) T ss_dssp -CEEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECCCCTTCCCCGGGGSSCCEE T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCcCCCCCCcceecEEEEEEECCEEEEEEEEeCCCCcccccCchhheecCCEE Confidence 45678999999999999999999998665443333322222222223334456889999999887777777778889999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) ++|++..+..++......+........ ...|+++++||.|+....... ......++...+ ..++++ T Consensus 82 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~ 148 (177) T 7BTD_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVIS------------YEEGKALAESWN-AAFLES 148 (177) T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTTSCCCEEEEEECTTCTTTCCSC------------HHHHHHHHHHTT-CEEEEC T ss_pred EEEEECCChHHHHHHHHHHHHHHHhhCCCCCcEEEEeecCcCccccccC------------HHHHHHHHHHcC-CcEEEE Confidence 999999887666555433333332221 268999999999986532110 111112222222 578899 Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184) |+.++.++.++|.++.+.+. T Consensus 149 s~~~~~~i~~~~~~l~~~~~ 168 (177) T 7BTD_A 149 SAKENQTAVDVFRRIILEAE 168 (177) T ss_dssp CTTCHHHHHHHHHHHHHHHH T ss_pred ecCCCccHHHHHHHHHHHHh Confidence 99999999999999887654
##### No 66 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1S8F_B Ras-related protein Rab-9A; intracellular transport, vesicular trafficking, hemihedral; HET: GDP, BEZ; 1.77A {Canis lupus familiaris} SCOP: c.37.1.8 Probab=99.77 E-value=4.3e-23 Score=138.16 Aligned_cols=168 Identities=30% Similarity=0.500 Sum_probs=109.8 Template_Neff=11.700 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) ......++++++|++++|||+|++++..........++....+ .......+....+.+||++|+..+...+..+...+| T Consensus 4 ~~~~~~~~v~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 83 (177) T 1S8F_B 4 AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSD 83 (177) T ss_dssp TTCEEEEEEEEECCTTSSHHHHHHHHHHSCCC--CCEEEEEEEEEEEEEETTEEEEEEEEEEESSCCCHHHHHHHHTTCS T ss_pred CCccceEEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceEEEEEEEEEEECCEEEEEEEEeCCCChHHHhcChhhhCCCC Confidence 3456778999999999999999999987654332222221111 111222333467889999998887777888888999 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184) ++++++++.+..++......+....... ....|+++++||.|+...... ......++...+.. T Consensus 84 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vlv~nk~D~~~~~~~-------------~~~~~~~~~~~~~~ 150 (177) T 1S8F_B 84 CCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVS-------------TEEAQAWCRDNGDY 150 (177) T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTTCSCGGGSCEEEEEECTTCSCCSSC-------------HHHHHHHHHHTTCC T ss_pred EEEEEeeCCChHHHHHHHHHHHHHHHHhcCCCCcCCCEEEEEeCCccccCccC-------------HHHHHHHHHHhCCC Confidence 9999999998766555432222221111 135789999999998542111 01111122222335 Q sequence1 158 GYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) .++++|++++.++.++|..+.+.+++ T Consensus 151 ~~~~~S~~~~~~i~~~~~~l~~~~~~ 176 (177) T 1S8F_B 151 PYFETSAKDATNVAAAFEEAVRRVLA 176 (177) T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHC- T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHc Confidence 67889999999999999999888764
##### No 67 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3MJH_A Ras-related protein Rab-5A (E.C.3.6.5.2), Early; PROTEIN-ZINC FINGER COMPLEX, BETA BETA; HET: GTP; 2.03A {Homo sapiens} Probab=99.77 E-value=4.5e-23 Score=136.21 Aligned_cols=164 Identities=30% Similarity=0.465 Sum_probs=109.8 Template_Neff=12.400 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ...++|+++|+.++|||||++.+..........++....+ .......+....+.+||++|.+.+...+..++..+++++ T Consensus 3 ~~~~~i~~~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (168) T 3MJH_A 3 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAI 82 (168) T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE T ss_pred ceeEEEEEECCCCCChhHHHHHHhCCCCCcccccceeeeEEEEEEEeCCeEEEEEEEeCCCchhhHhhchhhccCCcEEE Confidence 5678999999999999999999887654332222111111 111222334567899999999888777888888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) +|+|+++..++......+...........|+++++||.|+....... ......++... ...++++|+ T Consensus 83 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~d~~~~~~~~------------~~~~~~~~~~~-~~~~~~~s~ 149 (168) T 3MJH_A 83 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD------------FQEAQSYADDN-SLLFMETSA 149 (168) T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC------------HHHHHHHHHTT-TCEEEECCT T ss_pred EEeeCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEechhccccccCC------------HHHHHHHHHHC-CCeEEEeeC Confidence 99999987666555443333333223468899999999986532110 01111122222 256889999 Q sequence1 165 KTKDGVREVFEMATRAAL 182 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~~ 182 (184) .++.++.+++.++.+.+. T Consensus 150 ~~~~~i~~~~~~l~~~~~ 167 (168) T 3MJH_A 150 KTSMNVNEIFMAIAKKLP 167 (168) T ss_dssp TTCTTHHHHHHHHHHHSC T ss_pred CCCCCHHHHHHHHHhhcC Confidence 999999999998877653
##### No 68 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5SZH_B MICAL C-terminal-like protein, Ras-related protein; Mical-cL, DUF3585, Mical, Rab effector; HET: GNP; 2.3A {Homo sapiens} Probab=99.77 E-value=4.8e-23 Score=141.25 Aligned_cols=166 Identities=28% Similarity=0.519 Sum_probs=111.4 Template_Neff=11.200 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ....++|+++|..++|||||++++..........++....+ ...+..++....+.+||++|+..+...+..++..++++ T Consensus 7 ~~~~~~v~l~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (203) T 5SZH_B 7 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 86 (203) T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCSEE T ss_pred ccceeEEEEECCCCCCHHHHHHHHhcCCCCcccccceeeEEEEEEEEECCEEEEEEEEeCCCChhhHHhchHHccCCCEE Confidence 35678999999999999999999987765433222221111 12223334456789999999887777777788899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|+|+++..++.....++...........|+++++||.|+........ .....++...+ +.++++| T Consensus 87 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~vv~nK~D~~~~~~~~~------------~~~~~~~~~~~-~~~~~~S 153 (203) T 5SZH_B 87 IVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDN------------TTAKEFADSLG-IPFLETS 153 (203) T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH------------HHHHHHHHHTT-CCEEECC T ss_pred EEEEcCCCHHHHHHHHHHHHHHHHHccCCCeEEEEEeccccCCCccCCH------------HHHHHHHHHhC-CCEEEee Confidence 9999999877666654333333222224678999999999865321100 01111122222 5789999 Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184) +.++.++.++|.++...+.+ T Consensus 154 ~~~~~~v~~~~~~l~~~~~~ 173 (203) T 5SZH_B 154 AKNATNVEQAFMTMAAEIKK 173 (203) T ss_dssp TTTCTTHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHH Confidence 99999999999998876643
##### No 69 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4KLZ_A GTP-binding protein Rit1; small GTPase, molecular switch (GTPase); HET: GDP; 2.3A {Homo sapiens} Probab=99.77 E-value=4.9e-23 Score=137.22 Aligned_cols=165 Identities=27% Similarity=0.438 Sum_probs=104.6 Template_Neff=11.900 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) ....+|+++|..|+||||+++++..........+............++....+.+||++|++.+...+..++..++++++ T Consensus 3 ~~~~~i~i~G~~~~GKss~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~ 82 (173) T 4KLZ_A 3 SREYKLVMLGAGGVGKSAMTMQFISHRFPEDHDPTIEDAYKIRIRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFII 82 (173) T ss_dssp --CEEEEEECCTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEECSSSSCEEEEEEECCCC---------TTSSCCEEEE T ss_pred CceEEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceEEEEEECCEEEEEEEEeCCCchHHHHHHHHHhhcCCEEEE Confidence 45789999999999999999999877655443333222223333444455778999999998887777778889999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) |+++.+..++......+....... ....|+++++||+|+...... ............+ ..++++|+ T Consensus 83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~------------~~~~~~~~~~~~~-~~~~~~s~ 149 (173) T 4KLZ_A 83 CYSITDRRSFHEVREFKQLIYRVRRTDDTPVVLVGNKSDLKQLRQV------------TKEEGLALAREFS-CPFFETSA 149 (173) T ss_dssp EEETTCHHHHHTHHHHHHHHHHHTCSSCCCEEEEEECTTCGGGCCS------------CHHHHHHHHHHTT-CCEEECBG T ss_pred EEECCChHHHHHHHHHHHHHHHhhCCCCCcEEEEEeCccccccCCC------------CHHHHHHHHHHhC-CCEEEeec Confidence 999998766655433222221111 236799999999998753211 0111112222233 56889999 Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184) .++.|+.++|.++.+.+.+ T Consensus 150 ~~~~~v~~~~~~l~~~~~~ 168 (173) T 4KLZ_A 150 AYRYYIDDVFHALVREIRR 168 (173) T ss_dssp GGTBSHHHHHHHHHHHHTT T ss_pred CCCcCHHHHHHHHHHHHHH Confidence 9999999999998877653
##### No 70 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5UQW_B GTPase KRas (E.C.3.6.5.-); KRAS, GTPase, HYDROLASE; HET: GDP; 1.5A {Homo sapiens} Probab=99.77 E-value=5.6e-23 Score=139.58 Aligned_cols=167 Identities=31% Similarity=0.476 Sum_probs=101.2 Template_Neff=10.900 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) +.+....+|+++|++++|||+|++++..........++....+......++....+.+||++|.+.+...+..+...+++ T Consensus 18 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 97 (189) T 5UQW_B 18 GSHMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 97 (189) T ss_dssp ---CCEEEEEEEECTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECC------------CTTCSE T ss_pred CccCCcEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcccceEEEEEECCEEEEEEEEeCCCchHHHHHHHHHhhcCCE Confidence 45667799999999999999999999876554333333222222333334445678899999988777777778888999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184) +++++++.+..++.............. ....|+++++||.|+........ ....++.... ..++. T Consensus 98 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~v~v~nK~D~~~~~~~~~-------------~~~~~~~~~~-~~~~~ 163 (189) T 5UQW_B 98 FLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTK-------------QAQDLARSYG-IPFIE 163 (189) T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTTCSCCCEEEEEECTTCSCCCSCHH-------------HHHHHHHHHT-CCEEE T ss_pred EEEEEeCCChHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCCCCCCCCHH-------------HHHHHHHHHC-CCEEE Confidence 999999988766655433222222211 23689999999999875321111 0111111122 46788 Q sequence1 162 CSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~~ 183 (184) +|+.++.++.+++.++...+.+ T Consensus 164 ~S~~~~~~i~~~~~~l~~~~~~ 185 (189) T 5UQW_B 164 TSAKTRQGVDDAFYTLVREIRK 185 (189) T ss_dssp CCTTTCTTHHHHHHHHHHHHHH T ss_pred EeCCCCCCHHHHHHHHHHHHHH Confidence 9999999999999998887654
##### No 71 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4DRZ_A Ras-related protein Rab-14; RAS, GTPASE, GTP, ONCOGENE, RAB14; HET: GDP; 2.3A {Homo sapiens} Probab=99.77 E-value=6.4e-23 Score=139.30 Aligned_cols=167 Identities=29% Similarity=0.447 Sum_probs=106.9 Template_Neff=11.900 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) ......+|+++|++++|||+|++++..........++..... .......+....+.+||++|...+...+...+..+|+ T Consensus 26 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~ 105 (196) T 4DRZ_A 26 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAG 105 (196) T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCC----CTTSCCCCEEEEEEECSSCEEEEEEEECC------CHHHHHHHTEEE T ss_pred CceeeEEEEEECCCCCChHHHHHHHcCCccccCCCCcceEEEEEEEEEECCEEEEEEEEeCCCChhhHhhCHHHhcCCCE Confidence 456678999999999999999999987665433322221111 1222233345688999999988777777778889999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++|+|+++..++......+...........|+++|+||.|+....... ......++...+ +.++.+ T Consensus 106 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~ 172 (196) T 4DRZ_A 106 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT------------YEEAKQFAEENG-LLFLEA 172 (196) T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHHT-CEEEEC T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEehhHhhhccCCC------------HHHHHHHHHHcC-CeEEEe Confidence 9999999987666655443333333223467899999999986532110 011111222222 568899 Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184) |+.++.++.++|.++.+.+.+ T Consensus 173 s~~~~~~i~~~~~~l~~~i~~ 193 (196) T 4DRZ_A 173 SAKTGENVEDAFLEAAKKIYQ 193 (196) T ss_dssp CTTTCTTHHHHHHHHHHHHHT T ss_pred eCCCCCCHHHHHHHHHHHHHH Confidence 999999999999998887754
##### No 72 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6HDU_A Ras-related protein Rab-38; Rab small GTPase, membrane trafficking; HET: GTP; 1.793A {Homo sapiens} Probab=99.77 E-value=7.7e-23 Score=137.85 Aligned_cols=170 Identities=22% Similarity=0.327 Sum_probs=106.6 Template_Neff=11.600 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIEVD-GKQVELALWDTAGLEDYDRLRPLSYPDT 80 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 80 (184) +......+|+++|..++|||+|++++....+.....++....+. ...... .....+.+||++|++.+...+..++..+ T Consensus 7 ~~~~~~~~i~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 86 (184) T 6HDU_A 7 PHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGLERFGNMTRVYYREA 86 (184) T ss_dssp CCEEEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEEETTEEEEEEEEEECGGGGGSSCHHHHHTTC T ss_pred CcccceEEEEEECCCCCCHHHHHHHHhcCCCCccCCcceeeEEEEEEEEcCCCCeEEEEEEeCCChHHhHhchHHHHhhC Confidence 34566899999999999999999999876544332222221111 111111 1235788999999988877777788899 Q sequence1 81 DVILMCFSIDSPDSLENIPEKWTPEVKH----FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184) Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184) +++++|+|+.+..++......+...... .....|+++++||+|+....... . ......++...+. T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~~~-~----------~~~~~~~~~~~~~ 155 (184) T 6HDU_A 87 MGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLANKCDQGKDVLMN-N----------GLKMDQFCKEHGF 155 (184) T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCCCTTSCCCEEEEEEECTTC---------------------CHHHHHHHHTC T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHHccCCCCCCcEEEEEEECCCCCCccccc-C----------hhHHHHHHHHhCC Confidence 9999999998866555442222211111 11357899999999986532100 0 0011112222233 Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) ..++++|++++.|+.+++.++...+.+ T Consensus 156 ~~~~~~s~~~~~~i~~~~~~l~~~~~~ 182 (184) T 6HDU_A 156 VGWFETSAKENINIDEASRCLVKHILA 182 (184) T ss_dssp SEEEECBTTTTBSHHHHHHHHHHHHHH T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHh Confidence 468899999999999999998877653
##### No 73 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3OES_A GTPase RhebL1; small gtpase, Structural Genomics, Structural; HET: GNP; 2.301A {Homo sapiens} Probab=99.77 E-value=7.7e-23 Score=139.40 Aligned_cols=168 Identities=27% Similarity=0.379 Sum_probs=109.9 Template_Neff=11.900 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) +...+..+|+++|.+++|||||++++..........++.................+.+||++|.+.+...+..++..+|+ T Consensus 19 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 98 (201) T 3OES_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201) T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCCceEEEEEEECCEEEEEEEEeCCCcHhhHhhhHHHhcCCCE Confidence 44567899999999999999999999876554333322222222223334455688999999988777777778889999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184) +++|+|+.+..++......+....... ....|+++++||.|+....... ......++...+ ..++. T Consensus 99 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~ 165 (201) T 3OES_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQ------------AVEGKKLAESWG-ATFME 165 (201) T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSC------------HHHHHHHHHHHT-CEEEE T ss_pred EEEEEeCCChHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcCCCccCCC------------HHHHHHHHHHHC-CCEEE Confidence 999999998776665544444333222 2468999999999997532110 011111222223 56889 Q sequence1 162 CSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~~ 183 (184) +|++++.++.++|.++...+.+ T Consensus 166 ~s~~~~~~~~~~~~~l~~~~~~ 187 (201) T 3OES_A 166 SSARENQLTQGIFTKVIQEIAR 187 (201) T ss_dssp CCTTCHHHHHHHHHHHHHHHHH T ss_pred eeCCCCCCHHHHHHHHHHHHHH Confidence 9999999999999988877653
##### No 74 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6BSX_B GTP-binding protein Rheb; mTORC1 G-protein, SIGNALING PROTEIN; HET: E7S, GDP, EDO, ACT; 1.65A {Homo sapiens} Probab=99.76 E-value=8.4e-23 Score=136.38 Aligned_cols=167 Identities=30% Similarity=0.416 Sum_probs=113.6 Template_Neff=12.200 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) +......+|+++|.+++|||+|++++..........++...........++....+.+||++|.+.+...+..+...+++ T Consensus 2 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 81 (178) T 6BSX_B 2 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 81 (178) T ss_dssp -CCEEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGGTTCCE T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHcCCCCCccCCCcccceEEEEEECCEEEEEEEEeCCCCCcccccchHhcCCCCE Confidence 45677899999999999999999999866544333332222222223333445678999999988777777777888999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184) +++|++..+..++......+....... ....|+++++||.|+....... ......++...+ ..+++ T Consensus 82 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~~k~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~ 148 (178) T 6BSX_B 82 YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVIS------------YEEGKALAESWN-AAFLE 148 (178) T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECTTCGGGCCSC------------HHHHHHHHHHTT-CCEEE T ss_pred EEEEEeCCChHHHHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCccceeC------------HHHHHHHHHHcC-CeEEE Confidence 999999998766655544333333222 2368999999999986532110 111112222323 57899 Q sequence1 162 CSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~ 182 (184) +|+.++.++.++|.+++..+. T Consensus 149 ~s~~~~~~i~~~~~~l~~~~~ 169 (178) T 6BSX_B 149 SSAKENQTAVDVFRRIILEAE 169 (178) T ss_dssp CCTTCHHHHHHHHHHHHHHHH T ss_pred EecCCCccHHHHHHHHHHHHh Confidence 999999999999999887654
##### No 75 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3RWO_B GTP-binding protein YPT32/YPT11; GTPASES, PROTEIN-GDP COMPLEX, EXOCYTOSIS, GOLGI; HET: GDP; 1.7A {Saccharomyces cerevisiae} Probab=99.76 E-value=9e-23 Score=137.55 Aligned_cols=167 Identities=29% Similarity=0.368 Sum_probs=109.9 Template_Neff=11.700 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) .....++|+++|.+++|||||++++..........++.... ........+....+.+||++|...+...+..+...+++ T Consensus 6 ~~~~~~~i~v~G~~~~GKss~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~ 85 (185) T 3RWO_B 6 DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYRAITSAYYRGAVG 85 (185) T ss_dssp CCSEEEEEEEEEC-CCSHHHHHHHHHHSCCCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEESCTTCHHHHHHHHTTCSE T ss_pred cccceeEEEEECCCCCCHHHHHHHHcCCCCCCCCCCcceEEEEEEEEEECCEEEEEEEEeCCCchHHHHhCHHHhcCCCE Confidence 34567899999999999999999998776543222221111 11222333445678899999998777777778888999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++|++.++..++......+...........|+++|+||.|+....... ......++... ...++++ T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nk~D~~~~~~~~------------~~~~~~~~~~~-~~~~~~~ 152 (185) T 3RWO_B 86 ALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVP------------TDEAKNFAMEN-QMLFTET 152 (185) T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC------------HHHHHHHHHHT-TCEEEEC T ss_pred EEEEEcCCChHHHhhHHHHHHHHHHhCCCCCEEEEEEechhhhhhcCCC------------HHHHHHHHHHC-CCEEEEe Confidence 9999999987666655433333222222468999999999986532110 01111111122 2467889 Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184) |+.++.++.++|.++...+.+ T Consensus 153 s~~~~~~i~~~~~~l~~~~~~ 173 (185) T 3RWO_B 153 SALNSDNVDKAFRELIVAIFQ 173 (185) T ss_dssp CTTTCTTHHHHHHHHHHHHHH T ss_pred cCCCCCCHHHHHHHHHHHHHH Confidence 999999999999888776654
##### No 76 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2IWR_A CENTAURIN GAMMA 1; ANK REPEAT, ZINC-FINGER, GTP-BINDING, NUCLEOTIDE-BINDING; HET: CAF; 1.5A {HOMO SAPIENS} Probab=99.76 E-value=9e-23 Score=136.74 Aligned_cols=164 Identities=19% Similarity=0.285 Sum_probs=108.0 Template_Neff=11.700 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) +...+.++|+++|.+++|||+|++++....+... .++............+....+.+||++|.+.+ .++..+++ T Consensus 2 ~~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~-----~~~~~~~~ 75 (178) T 2IWR_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADA 75 (178) T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCCC-SSCSSSEEEEEEEETTEEEEEEEEECSSSCCH-----HHHHHCSE T ss_pred CCCCCeEEEEEECCCCCChHHHHHHHhcCCCCCC-CCCccceEEEEEEECCEEEEEEEEeCCCCCCh-----HHhhhCCE Confidence 4567789999999999999999999987655432 12211222223333444567899999997653 35567899 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFG 158 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184) +++|+|++++.++..... +...+... ....|+++++||.|+........ .......++.....+. T Consensus 76 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~ivv~~k~d~~~~~~~~~----------~~~~~~~~~~~~~~~~ 144 (178) T 2IWR_A 76 VIFVFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVV----------GDARARALCADMKRCS 144 (178) T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCS----------CHHHHHHHHHHHSSEE T ss_pred EEEEeeCCCHHHHHHHHH-HHHHHHHhhhcCCCCCeEEEEeeccccCCCCCccc----------CHHHHHHHHHHccCCe Confidence 999999998877766433 22222211 14689999999999875321100 0111112222222367 Q sequence1 159 YMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 159 ~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) ++.+|++++.++.++|.++.+.+.+ T Consensus 145 ~~~~S~~~~~~i~~~~~~l~~~~~~ 169 (178) T 2IWR_A 145 YYETCATYGLNVDRVFQEVAQKVVT 169 (178) T ss_dssp EEEEBTTTTBTHHHHHHHHHHHHHH T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH Confidence 8999999999999999998887653
##### No 77 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1EK0_A GTP-BINDING PROTEIN YPT51; G PROTEIN, VESICULAR TRAFFIC, GTP; HET: GNP, GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Probab=99.76 E-value=9.3e-23 Score=135.31 Aligned_cols=166 Identities=27% Similarity=0.467 Sum_probs=110.7 Template_Neff=12.100 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) +.++|+++|..++|||||++++..........+...... .......+....+.+||++|.+.+...+..++..+|++++ T Consensus 2 ~~~~i~i~G~~~~GKs~li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 81 (170) T 1EK0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV 81 (170) T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCcccCCCcEEEEEEEEEEEECCEEEEEEEEeCCCcHHHHhhhhhhcCCCCEEEE Confidence 468999999999999999999987655433222221111 1122333445678999999998888778888889999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184) ++|+.+..++......+..+........|+++++||.|+......... .......++...+ +.++.+|++ T Consensus 82 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~k~d~~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~~sa~ 151 (170) T 1EK0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKV---------AREEGEKLAEEKG-LLFFETSAK 151 (170) T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCS---------CHHHHHHHHHHHT-CEEEECCTT T ss_pred EEeCCCHHHHHHHHHHHHHHHHHcCCCCEEEEEEEcHHhcccCCcccC---------CHHHHHHHHHHhC-CEEEEeeCC Confidence 999988766665543333333222246789999999999864321110 0111111222222 568899999 Q sequence1 166 TKDGVREVFEMATRAAL 182 (184) Q Consensus 166 ~~~~i~~~~~~~~~~~~ 182 (184) ++.|+.++|+++.+.+. T Consensus 152 ~~~~i~~~~~~l~~~i~ 168 (170) T 1EK0_A 152 TGENVNDVFLGIGEKIP 168 (170) T ss_dssp TCTTHHHHHHHHHTTSC T ss_pred CCCCHHHHHHHHHhhcc Confidence 99999999998887653
##### No 78 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5CM8_B Ral guanine nucleotide dissociation stimulator-like; Complex G-protein Exchange Factor, signaling; 2.6A {Mus musculus} Probab=99.76 E-value=9.6e-23 Score=139.89 Aligned_cols=165 Identities=32% Similarity=0.471 Sum_probs=108.7 Template_Neff=11.000 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ....++|+++|.+++|||||++++....+.....++....+...+...+....+.+||++|...+...+..++..+++++ T Consensus 10 ~~~~~~i~i~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (203) T 5CM8_B 10 GPALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 89 (203) T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHCSSCCSSCCTTSTTTTEEEEEETTEEEEEEEEECTTCTTCSSHHHHHHTTCSEEE T ss_pred CCCeEEEEEECCCCCCHHHHHHHHhcCcCCCCCCCCcccceEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhccCCEEE Confidence 45668999999999999999999887665433333222223333334444567899999999888878888888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) +|+++.+..++......+..+.... ....|+++|+||+|+........ ......... ....++.+| T Consensus 90 lv~~~~~~~s~~~~~~~~~~~~~~~~~~~~pvilv~nK~D~~~~~~~~~------------~~~~~~~~~-~~~~~~~~S 156 (203) T 5CM8_B 90 CVFSITDDESFQATQEFREQILRVKNDESIPFLLVGNKCDLNDKRKVPL------------SECQLRAQQ-WAVPYVETS 156 (203) T ss_dssp EEECTTCSHHHHTHHHHHHHHHTTCCCTTCSEEEEECC---CCSCCSCH------------HHHHHHHGG-GTCCEEECB T ss_pred EEeeCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeChhcCCCCCCCH------------HHHHHHHHH-hCCCEEEee Confidence 9999998777665543333332221 23579999999999865321100 000000111 125678899 Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184) ++++.++.++|.++.+.+. T Consensus 157 ~~~~~~v~~~~~~i~~~~~ 175 (203) T 5CM8_B 157 AKTRENVDKVFFDLMREIR 175 (203) T ss_dssp TTTTBSHHHHHHHHHHHHH T ss_pred CCCCccHHHHHHHHHHHHH Confidence 9999999999999887654
##### No 79 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4KU4_A Ras-3 from Cryphonectria parasitica; small G protein, GTP/GDP binding; HET: GDP; 1.6A {Cryphonectria parasitica} Probab=99.76 E-value=1.1e-22 Score=139.44 Aligned_cols=166 Identities=30% Similarity=0.491 Sum_probs=110.1 Template_Neff=11.600 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) .....+|+++|.+++|||+|++++....+.....++....+.......+....+.+||++|.+.+...+..++..+++++ T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~vi 90 (206) T 4KU4_A 11 GKITDKIAMLGEGGVGKTSLTVNLTKHVFSETYDPTLEDSYRRQCVIDGIPSHLEILDTAGQEEYGALREQWIRQNELFV 90 (206) T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHTCTTTTTCCCSSCCEEEEEEEETTEEEEEEEECCCC-----HHHHHHHHTCSEEE T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhccCCCCCCCCcccceeEEEEeCCeeeeEEEEeCCCccchHhHHHHHHhcCCEEE Confidence 45678999999999999999999987765443333322222323333344567899999998877777878888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-------------------CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPE 145 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (184) +|+|+++..++......+....... ....|+++++||.|+....... .. T Consensus 91 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~~k~D~~~~~~~~------------~~ 158 (206) T 4KU4_A 91 IVFDVTRRSSFEAAERLFEEVIQTKRKLDETRRHPGDRHPDDLPFAPSLVVLVGNKCDLDTRREVG------------TL 158 (206) T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHHHHTC-------------CCCGGGEEEEEECTTCGGGCSSC------------HH T ss_pred EEEeCCChhhHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCcEEEEEEeCcccccccccC------------HH Confidence 9999998776666544443332211 1246799999999987633211 01 Q sequence1 146 EGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 146 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) ....++...+ +.++.+|++++.++.++|.++.+.+.+ T Consensus 159 ~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~l~~~~~~ 195 (206) T 4KU4_A 159 EGSSLAKKLG-CGFVETSAKLGTNVEEAFFSVVRADRR 195 (206) T ss_dssp HHHHHHHHHT-CEEEECBTTTTBTHHHHHHHHHHHHHH T ss_pred HHHHHHHHHC-CcEEEeecCCCCCHHHHHHHHHHHHHH Confidence 1111222223 578999999999999999998887653
##### No 80 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1ZJ6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, Transport Protein; HET: SO4, G3D; 2.0A {Homo sapiens} SCOP: c.37.1.8 Probab=99.76 E-value=1.3e-22 Score=137.91 Aligned_cols=163 Identities=18% Similarity=0.284 Sum_probs=105.1 Template_Neff=10.300 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ..+..+|+++|++++|||||++++....+... .++.... ... .......+.+||++|++.+...+..++..+++++ T Consensus 13 ~~~~~ki~ivG~~~~GKstl~~~l~~~~~~~~-~~t~~~~-~~~--~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ii 88 (187) T 1ZJ6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN-VEE--IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187) T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSCSS-CEE--EEETTEEEEEEECCC----CGGGHHHHTTCCEEE T ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCce-eEE--EEECCEEEEEEECCCChhhhhHHHHhcCCCCEEE Confidence 45678999999999999999999987665322 1221111 111 1123457889999999888888888888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) +|+|.++..++......+...... .....|+++++||.|+...... ...... ............++.+| T Consensus 89 ~v~d~~~~~~~~~~~~~l~~~~~~~~~~~~~iilv~nK~D~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~S 158 (187) T 1ZJ6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV-AEISQF---------LKLTSIKDHQWHIQACC 158 (187) T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH-HHHHHH---------HTGGGCCSSCEEEEECB T ss_pred EEEECCChHhHHHHHHHHHHHhcCHhhhCCeEEEEEeCCCCCcCCCH-HHHHHH---------cCchhhCCCCeEEEECC Confidence 999999876555554444444322 1236889999999999753211 111000 00000011124678899 Q sequence1 164 AKTKDGVREVFEMATRAA 181 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~ 181 (184) |+++.|+.++|.++.+.. T Consensus 159 a~~~~gi~~~~~~l~~~~ 176 (187) T 1ZJ6_A 159 ALTGEGLCQGLEWMMSRL 176 (187) T ss_dssp TTTTBTHHHHHHHHHHHH T ss_pred CCCCcCHHHHHHHHHHHH Confidence 999999999999987754
##### No 81 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5Z2M_A Oxysterol-binding protein-related protein 1, Ras-related; GTPase, Effector, Complex, ENDOCYTOSIS; HET: GTP; 2.142A {Mus musculus} Probab=99.76 E-value=1.3e-22 Score=135.00 Aligned_cols=168 Identities=26% Similarity=0.465 Sum_probs=109.8 Template_Neff=12.400 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) +......+|+++|+.++|||||++++..........++....+ ............+.+||++|++.+...+..++..++ T Consensus 3 ~~~~~~~~i~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 82 (176) T 5Z2M_A 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSLGVAFYRGAD 82 (176) T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHCCCCSCCCCCCSCEEEEEEEEETTEEEEEEEEECCCSTTTHHHHGGGCTTCS T ss_pred cccceEEEEEEECCCCCCHHHHHHHHhCCCcCcCCCCcceeEEEEEEEEECCEEEEEEEEECCCCHHhHhhhHHHHccCC Confidence 4456678999999999999999999987655433222221111 112222334567889999999888777877888999 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKH----FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184) ++++|+++++..++......+...... .....|+++++||.|+......... ........... T Consensus 83 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nk~d~~~~~~~~~~-------------~~~~~~~~~~~ 149 (176) T 5Z2M_A 83 CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKR-------------AQAWCYSKNNI 149 (176) T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCGGGCCEEEEEECTTSSSCCSCHHH-------------HHHHHHHTTSC T ss_pred EEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCCCCcEEEEEECcccccCcccHHH-------------HHHHHHHcCCC Confidence 999999998866554442222221111 1136789999999998653211100 00111111235 Q sequence1 158 GYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) .++++|++++.|+.++|.++...+++ T Consensus 150 ~~~~~s~~~~~~i~~~~~~l~~~~~~ 175 (176) T 5Z2M_A 150 PYFETSAKEAINVEQAFQTIARNALK 175 (176) T ss_dssp CEEECBTTTTBSHHHHHHHHHHHHHC T ss_pred CEEEeecCCCCCHHHHHHHHHHHHhc Confidence 78899999999999999999888764
##### No 82 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5SZI_A Ras-related protein Rab-8A, MICAL C-terminal-like; Mical-cL, DUF3585, Mical, Rab effector; HET: GNP; 2.85A {Homo sapiens} Probab=99.76 E-value=1.4e-22 Score=138.99 Aligned_cols=168 Identities=30% Similarity=0.505 Sum_probs=87.5 Template_Neff=11.800 Q sequence1 2 AMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDT 80 (184) Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 80 (184) .+......+|+++|++++|||+|++++..........++....+ ......++....+.+||++|...+...+..++..+ T Consensus 4 ~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 83 (209) T 5SZI_A 4 AKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 83 (209) T ss_dssp -----CCEEEEEECSTTSSHC-----------------CCSEEEEEEEEEETTEEEEEEEEEECCSHHHHHHHHHTTSSC T ss_pred CCCcccCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCCHHhHHhHHHHhcCC Confidence 34567789999999999999999999987654433222221111 12223333456789999999887777787888899 Q sequence1 81 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160 (184) Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184) |++++|+|+++..++......+...........|+++++||.|+....... ......++...+ ..++ T Consensus 84 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~ 150 (209) T 5SZI_A 84 MGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVS------------KERGEKLALDYG-IKFM 150 (209) T ss_dssp SEEEEEEETTCHHHHHTHHHH---HH-----HHHHEE-EECTTCCTTCCSC------------HHHHHHHHHHHT-CEEE T ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCCCEEEEEECcCCCCcccCC------------HHHHHHHHHHcC-CCEE Confidence 999999999987766665433333333222468999999999987532110 111112222222 5689 Q sequence1 161 ECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ++|++++.++.+++.++...+. T Consensus 151 ~~s~~~~~~i~~~~~~l~~~~~ 172 (209) T 5SZI_A 151 ETSAKANINVENAFFTLARDIK 172 (209) T ss_dssp ECBTTH----------HHHHHH T ss_pred EccCCCCCCHHHHHHHHHHHHH Confidence 9999999999999999887764
##### No 83 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4RKF_B Ras-related protein Rab-3; GTP hydrolysis, hydrolase; HET: 1PE, GNP; 1.5A {Drosophila melanogaster} Probab=99.76 E-value=1.4e-22 Score=137.19 Aligned_cols=165 Identities=29% Similarity=0.458 Sum_probs=110.7 Template_Neff=11.600 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ....++|+++|.+++|||||++++....+.....++...... ...........+.+||++|+..+...+..++..+|++ T Consensus 20 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 99 (190) T 4RKF_B 20 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGLERYRTITTAYYRGAMGF 99 (190) T ss_dssp SSEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTCTTCSEE T ss_pred cceeEEEEEECCCCCChHHHHHHHcCCCCccccccceEEEEEEEEEEECCEEEEEEEEeCCCcHHHHHHhHHHhCCCCEE Confidence 445689999999999999999999877654333222221111 1111223346789999999988888888888899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|+|+++..++......+...........|+++++||.|+....... ......+.... ...++.+| T Consensus 100 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~k~D~~~~~~~~------------~~~~~~~~~~~-~~~~~~~s 166 (190) T 4RKF_B 100 ILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVIS------------FERGRQLADQL-GVEFFETS 166 (190) T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHH-TCEEEECB T ss_pred EEEEeCCCHHHHHhHHHHHHHHHHhCcCCCEEEEEEeccccCCcccCC------------HHHHHHHHHHH-CCcEEEee Confidence 999999987666555433322222222467999999999987642110 00011111122 25688999 Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184) +..+.++.++|.++.+.+. T Consensus 167 ~~~~~~i~~~~~~l~~~~~ 185 (190) T 4RKF_B 167 AKENVNVKAVFERLVDIIC 185 (190) T ss_dssp TTTTBSHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHH Confidence 9999999999999887764
##### No 84 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1Z08_A Ras-related protein Rab-21; Rab GTPase, Rab21, Vesicular trafficking; HET: GNP; 1.8A {Homo sapiens} SCOP: c.37.1.8 Probab=99.76 E-value=1.5e-22 Score=134.46 Aligned_cols=166 Identities=27% Similarity=0.495 Sum_probs=105.1 Template_Neff=12.000 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) .....+++++|++++|||++++++..........++....+ .......+..+.+.+||++|...+...+..++..++++ T Consensus 3 ~~~~~~v~i~G~~~~GKs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 82 (170) T 1Z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170) T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE T ss_pred ccceEEEEEECCCCCCHHHHHHHHhCCCCCcCCCCcceeeEEEEEEEECCEEEEEEEEeCCCchHhhhchhhhhcCCCEE Confidence 35688999999999999999999886644332222221111 11222234456789999999888777788888899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|+++.+..++......+...........|+++++||.|+....... .......+... ...++.+| T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~d~~~~~~~~------------~~~~~~~~~~~-~~~~~~~s 149 (170) T 1Z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS------------IQEAESYAESV-GAKHYHTS 149 (170) T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSC------------HHHHHHHHHHT-TCEEEEEB T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCCccCCC------------HHHHHHHHHHh-CCeEEEEe Confidence 999999987666555333333222222357899999999987632110 01111112222 25678899 Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184) +.++.++.++|.++.+.+++ T Consensus 150 ~~~~~~v~~~~~~l~~~~~~ 169 (170) T 1Z08_A 150 AKQNKGIEELFLDLCKRMIE 169 (170) T ss_dssp TTTTBSHHHHHHHHHHHHHC T ss_pred ccCCCCHHHHHHHHHHHHhc Confidence 99999999999999888764
##### No 85 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1G16_B RAS-RELATED PROTEIN SEC4; G protein Rab, SIGNALING PROTEIN; HET: MSE, GDP; 1.8A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Probab=99.75 E-value=1.6e-22 Score=134.37 Aligned_cols=162 Identities=28% Similarity=0.564 Sum_probs=107.8 Template_Neff=11.900 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) ..++|+++|++++|||+|++++..........++..... ............+.+||++|.+.+...+..+...++++++ T Consensus 2 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~ 81 (170) T 1G16_B 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170) T ss_dssp CCEEEEEESSTTSSHHHHHHHHHTCCCCC-------CCEEEEEEESSSSEEEEEEEECTTCTTTSCCCHHHHTTEEEEEE T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccceeeeeEEEEEEEEEECCEEEEEEEEeCCCChhhHHhhHHHhCCCCEEEE Confidence 467999999999999999999987655433322221111 1122233345678999999988888788888889999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184) +++++++.++......+...........|+++++||+|+....... .....++...+ ..++.+|+. T Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~k~d~~~~~~~~-------------~~~~~~~~~~~-~~~~~~s~~ 147 (170) T 1G16_B 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTA-------------DQGEALAKELG-IPFIESSAK 147 (170) T ss_dssp EEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECTTCTTCCSCH-------------HHHHHHHHHHT-CCEEECBTT T ss_pred EEeCCCHHHHHHHHHHHHHHHHHCCCCCeEEEEEeCcccCCCCCCH-------------HHHHHHHHHhC-CCEEEeeCC Confidence 9999987766655433333322222468899999999986421110 11111222222 468899999 Q sequence1 166 TKDGVREVFEMATRAAL 182 (184) Q Consensus 166 ~~~~i~~~~~~~~~~~~ 182 (184) ++.++.++|.++.+.+. T Consensus 148 ~~~~~~~~~~~l~~~~~ 164 (170) T 1G16_B 148 NDDNVNEIFFTLAKLIQ 164 (170) T ss_dssp TTBSHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHH Confidence 99999999999887664
##### No 86 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1G17_B RAS-RELATED PROTEIN SEC4; G protein Rab, SIGNALING PROTEIN; HET: GNP; 2.0A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Probab=99.75 E-value=1.6e-22 Score=134.37 Aligned_cols=162 Identities=28% Similarity=0.564 Sum_probs=109.7 Template_Neff=11.900 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) ..++|+++|++++|||+|++++..........++..... ............+.+||++|.+.+...+..+...++++++ T Consensus 2 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~ 81 (170) T 1G17_B 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170) T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHTTCSEEEE T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccceeeeeEEEEEEEEEECCEEEEEEEEeCCCChhhHHhhHHHhCCCCEEEE Confidence 467999999999999999999987655433322221111 1122233345678999999988888788888889999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184) +++++++.++......+...........|+++++||+|+....... .....++...+ ..++.+|+. T Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~k~d~~~~~~~~-------------~~~~~~~~~~~-~~~~~~s~~ 147 (170) T 1G17_B 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTA-------------DQGEALAKELG-IPFIESSAK 147 (170) T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCSSCEEEEEEECTTCTTCCSCH-------------HHHHHHHHHHT-CCEEEEBTT T ss_pred EEeCCCHHHHHHHHHHHHHHHHHCCCCCeEEEEEeCcccCCCCCCH-------------HHHHHHHHHhC-CCEEEeeCC Confidence 9999987766655433333322222468899999999986421110 11111222222 468899999 Q sequence1 166 TKDGVREVFEMATRAAL 182 (184) Q Consensus 166 ~~~~i~~~~~~~~~~~~ 182 (184) ++.++.++|.++.+.+. T Consensus 148 ~~~~~~~~~~~l~~~~~ 164 (170) T 1G17_B 148 NDDNVNEIFFTLAKLIQ 164 (170) T ss_dssp TTBSHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHH Confidence 99999999999887664
##### No 87 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1ZBD_A RABPHILIN-3A, GUANOSINE-5'-TRIPHOSPHATE; G PROTEIN, EFFECTOR, RABCDR, SYNAPTIC; HET: GTP; 2.6A {Rattus norvegicus} SCOP: c.37.1.8 Probab=99.75 E-value=1.6e-22 Score=138.47 Aligned_cols=167 Identities=29% Similarity=0.566 Sum_probs=109.2 Template_Neff=11.400 Q sequence1 2 AMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDT 80 (184) Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 80 (184) .+.....++|+++|.+++|||+|++++....+.....++..... ............+.+||++|.+.+...+..++..+ T Consensus 2 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dt~g~~~~~~~~~~~~~~~ 81 (203) T 1ZBD_A 2 SHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGA 81 (203) T ss_dssp CCSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEE-----EEEEEEECCSGGGHHHHHTTGGGC T ss_pred CcccceeEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhHhhHhHhcCCC Confidence 35667889999999999999999999987655432222221111 11122223356788999999988877788888899 Q sequence1 81 DVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 159 (184) Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184) +++++|+++++..++.... .+...+... ....|+++++||.|+....... ......+..... ..+ T Consensus 82 ~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~ 147 (203) T 1ZBD_A 82 MGFILMYDITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVGNKCDMEDERVVS------------SERGRQLADHLG-FEF 147 (203) T ss_dssp SEEEEEEETTCHHHHHHHH-HHHHHHHHHSCSSCEEEEEEECTTCTTSCCSC------------HHHHHHHHHHHT-CEE T ss_pred CEEEEEEeCCCHHHHHHHH-HHHHHHHHHCCCCCCEEEEEeCccCCCccCCC------------HHHHHHHHHHHC-CCE Confidence 9999999999877665543 233333222 2467899999999987532110 000111111112 467 Q sequence1 160 MECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 160 ~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) +.+|+.++.++.++|.++.+.+. T Consensus 148 ~~~s~~~~~~i~~~~~~l~~~~~ 170 (203) T 1ZBD_A 148 FEASAKDNINVKQTFERLVDVIC 170 (203) T ss_dssp EECBTTTTBSSHHHHHHHHHHHH T ss_pred EEeeCCCCCCHHHHHHHHHHHHH Confidence 88999999999999988877654
##### No 88 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1WMS_B Ras-related protein Rab-9A; GTPase, PROTEIN TRANSPORT; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 Probab=99.75 E-value=1.7e-22 Score=135.41 Aligned_cols=166 Identities=30% Similarity=0.491 Sum_probs=106.9 Template_Neff=11.600 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ....++|+++|.+++|||+|++++..........++....+ .......+....+.+||++|++.+...+..+...++++ T Consensus 4 ~~~~~~i~~iG~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 83 (177) T 1WMS_B 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177) T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCCCCcceeEEEEEEeEEEECCEEEEEEEEECCCCHHHHhcChhhhCCCCEE Confidence 45678999999999999999999986654322222221111 11122233346788999999888877788888899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKH----FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 159 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184) ++|+++.+..++......+...... .....|+++|+||.|+....... .....++.......+ T Consensus 84 ~~v~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~~k~D~~~~~~~~-------------~~~~~~~~~~~~~~~ 150 (177) T 1WMS_B 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVST-------------EEAQAWCRDNGDYPY 150 (177) T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCC----CCCCEEEEEECTTCSCCSSCH-------------HHHHHHHHHTTCCCE T ss_pred EEEeeCCCHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcCCCcCCH-------------HHHHHHHHHhCCCCE Confidence 9999999876655443222222111 11367999999999986421110 111111222222567 Q sequence1 160 MECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 160 ~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) +.+|++++.++.++|.++.+.+++ T Consensus 151 ~~~s~~~~~~i~~~~~~l~~~~~~ 174 (177) T 1WMS_B 151 FETSAKDATNVAAAFEEAVRRVLA 174 (177) T ss_dssp EECCTTTCTTHHHHHHHHHHHHHH T ss_pred EEeecCCCCCHHHHHHHHHHHHHh Confidence 889999999999999998887653
##### No 89 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2HUP_B Crystal structure of human RAB43; G-PROTEIN, RAB, GDP, STRUCTURAL GENOMICS; HET: GDP; 2.05A {Homo sapiens} Probab=99.75 E-value=1.9e-22 Score=137.85 Aligned_cols=167 Identities=27% Similarity=0.420 Sum_probs=108.1 Template_Neff=11.500 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) ...+.++|+++|..++|||+|++++..........++..... .......+....+.+||++|.+.+...+..++..+|+ T Consensus 25 ~~~~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 104 (201) T 2HUP_B 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG 104 (201) T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEECC---CEEEEEECCTTCGGGHHHHHHHHTTCSE T ss_pred cccceEEEEEECCCCCChHHHHHHHhcCCCCCCcCceEEEEEEEEEEEECCEEEEEEEEECCCChhhHhhHHHHhhhCCE Confidence 356778999999999999999999987655433222211111 1122223345678999999988777777777889999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++|+|..+..++......+...........|+++|+||.|+....... ......++.......++++ T Consensus 105 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilv~~k~d~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 172 (201) T 2HUP_B 105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVS------------LAEAQSLAEHYDILCAIET 172 (201) T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCSCCEEEEEEECGGGGGGCCSC------------HHHHHHHHHHTTCSCEEEC T ss_pred EEEEEeCCChHHhhcHHHHHHHHHHHcCCCCEEEEEEcCCChhhchhCC------------HHHHHHHHHHcCCcEEEEE Confidence 9999999987666655433333332223578999999999987532110 1111122223333578999 Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184) |++++.++.++|+++.+.+. T Consensus 173 S~~~~~~i~~l~~~l~~~i~ 192 (201) T 2HUP_B 173 SAKDSSNVEEAFLRVATELI 192 (201) T ss_dssp CTTTCTTHHHHHHHHHHHHH T ss_pred eCCCCCCHHHHHHHHHHHHH Confidence 99999999999998887765
##### No 90 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3C5C_B RAS-like protein 12; ras, rasl12, gdp, gtpase, Structural; HET: GDP; 1.85A {Homo sapiens} Probab=99.75 E-value=1.9e-22 Score=136.40 Aligned_cols=167 Identities=27% Similarity=0.393 Sum_probs=110.8 Template_Neff=11.400 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) +...+..+|+++|.+++|||+|++++....+.....++....+.......+..+.+.+||++|++.+... ..++..+|+ T Consensus 16 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-~~~~~~~d~ 94 (187) T 3C5C_B 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187) T ss_dssp ----CEEEEEEEECTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCCT-HHHHTTCSE T ss_pred cCCCceeEEEEECCCCCCHHHHHHHHhcCCCcccCCCCcccceeEEEEECCEEEEEEEEeCCCCCCccch-HHHhhhCCE Confidence 3457789999999999999999999987655443333322222223334445678899999998766554 566788999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 159 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184) +++|++++...++......+....... ....|+++++||.|+....... ......++...+ +.+ T Consensus 95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~~k~d~~~~~~~~------------~~~~~~~~~~~~-~~~ 161 (187) T 3C5C_B 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVT------------KAEGVALAGRFG-CLF 161 (187) T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSC------------HHHHHHHHHHHT-CEE T ss_pred EEEEEeCCChHhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCcchhhhcccc------------HHHHHHHHHHhC-CcE Confidence 999999998776666533332222211 1268999999999987532110 111112222322 568 Q sequence1 160 MECSAKTK-DGVREVFEMATRAALQ 183 (184) Q Consensus 160 ~~~s~~~~-~~i~~~~~~~~~~~~~ 183 (184) +.+|++++ .|+.++|.++.+.+.+ T Consensus 162 ~~~s~~~~~~~~~~~~~~i~~~~~~ 186 (187) T 3C5C_B 162 FEVSACLDFEHVQHVFHEAVREARR 186 (187) T ss_dssp EECCTTSCHHHHHHHHHHHHHHHTC T ss_pred EEEecCCChhHHHHHHHHHHHHHHh Confidence 89999998 9999999999887764
##### No 91 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2GF9_A Ras-related protein Rab-3D; G-PROTEIN, RAB, Structural Genomics, Structural; HET: GDP; 1.53A {Homo sapiens} Probab=99.75 E-value=2e-22 Score=136.69 Aligned_cols=168 Identities=31% Similarity=0.507 Sum_probs=111.3 Template_Neff=11.200 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) +.....++|+++|.+++|||+|++++..........++..... ............+.+||++|.+.+...+..++..++ T Consensus 17 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d 96 (189) T 2GF9_A 17 RGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAM 96 (189) T ss_dssp TTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCS T ss_pred CCCceeEEEEEECCCCCCHHHHHHHHcCCCCCcccCCccEEEEEEEEEEECCEEEEEEEEeCCCchHHHHHHHHHhCCCe Confidence 4556789999999999999999999886654433222211111 111112233467899999999888777877888999 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184) ++++|+++++..++......+...........|+++++||.|+....... ......+....+ ..++. T Consensus 97 ~ii~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~iilv~nk~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~ 163 (189) T 2GF9_A 97 GFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVP------------AEDGRRLADDLG-FEFFE 163 (189) T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHHT-CEEEE T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHHHhcCCCCEEEEEEeCCcCCCCcCCC------------HHHHHHHHHHhC-CEEEE Confidence 99999999987766655433322222222467899999999986532110 000111111112 46788 Q sequence1 162 CSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~~ 183 (184) +|+.++.++.++|+++.+.+.+ T Consensus 164 ~s~~~~~~i~~~~~~l~~~~~~ 185 (189) T 2GF9_A 164 ASAKENINVKQVFERLVDVICE 185 (189) T ss_dssp CBTTTTBSHHHHHHHHHHHHHH T ss_pred eeCCCCCCHHHHHHHHHHHHHH Confidence 9999999999999998887653
##### No 92 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1X1R_A Ras-related protein M-Ras; GTP-binding, SIGNALING PROTEIN; HET: GDP; 1.3A {Mus musculus} SCOP: c.37.1.8 Probab=99.75 E-value=2e-22 Score=135.57 Aligned_cols=166 Identities=30% Similarity=0.431 Sum_probs=111.1 Template_Neff=11.000 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ..+.++|+++|+.++|||||++++..........++............+....+.+||++|...+...+..++..+++++ T Consensus 10 ~~~~~~i~ivG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 89 (178) T 1X1R_A 10 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 89 (178) T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE T ss_pred cCCceEEEEECCCCCChHHHHHHHhcCCCCCCCCCCcccceEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhhhCCEEE Confidence 35678999999999999999999887654333222222222222233334567889999998888878888888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) +|+++++..++......+....... ....|+++++||+|+...... .......++...+ ..++++| T Consensus 90 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~D~~~~~~~------------~~~~~~~~~~~~~-~~~~~~s 156 (178) T 1X1R_A 90 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKV------------TRDQGKEMATKYN-IPYIETS 156 (178) T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCS------------CHHHHHHHHHHHT-CCEEEEB T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCchhhcceee------------cHHHHHHHHHHhC-CCEEEEc Confidence 9999988766655433222222221 136799999999998753211 0111111222222 5789999 Q sequence1 164 AKTK-DGVREVFEMATRAALQ 183 (184) Q Consensus 164 ~~~~-~~i~~~~~~~~~~~~~ 183 (184) +..+ .+++++|.++...+.+ T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~ 177 (178) T 1X1R_A 157 AKDPPLNVDKTFHDLVRVIRQ 177 (178) T ss_dssp CSSSCBSHHHHHHHHHHHHHH T ss_pred cCCCCCCHHHHHHHHHHHHHh Confidence 9997 7999999998887765
##### No 93 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4FMC_B ROrf2, Ras-related protein Rab-1A; alpha-beta fold, Rab1-GAP, Rab1, PROTEIN; HET: AF3, PGE, GDP; 2.8A {Escherichia coli} Probab=99.75 E-value=2.1e-22 Score=133.45 Aligned_cols=165 Identities=28% Similarity=0.510 Sum_probs=110.9 Template_Neff=12.400 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ....++|+++|.+++|||+|++++..........+...... ......++....+.+||++|.+.+...+..++..++++ T Consensus 3 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~i 82 (171) T 4FMC_B 3 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 82 (171) T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE T ss_pred ccceEEEEEECCCCCChhHHHHHHcCCCCCccccccceeEEEEEEEEECCEEEEEEEEeCCCchHHHHchhhHhccCCEE Confidence 45678999999999999999999886654332222211111 11222233456789999999888887888888999999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|+|+++..++......+...........|+++++||.|+....... ......++...+ ..++++| T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s 149 (171) T 4FMC_B 83 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVD------------YTTAKEFADSLG-IPFLETS 149 (171) T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHHT-CCEEECC T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHccCCCcEEEEEeCCcCCCCccCC------------HHHHHHHHHHhC-CCEEEcc Confidence 999999987666555433333222223467899999999987643211 011111222222 5688999 Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184) +.++.++.+++.++.+.+. T Consensus 150 ~~~~~~i~~~~~~l~~~~~ 168 (171) T 4FMC_B 150 AKNATNVEQSFMTMAAEIK 168 (171) T ss_dssp TTTCTTHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHH Confidence 9999999999999887664
##### No 94 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2P5S_B RAS and EF-hand domain containing; G-PROTEIN, RAB, GDP, STRUCTURAL GENOMICS; HET: GDP; 2.15A {Homo sapiens} Probab=99.75 E-value=2.1e-22 Score=138.12 Aligned_cols=170 Identities=30% Similarity=0.457 Sum_probs=104.9 Template_Neff=10.400 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) .....+|+++|++++|||||++++..........++....+ ...+..++....+.+||++|++.+...+..++..++++ T Consensus 25 ~~~~~~ili~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~~ 104 (199) T 2P5S_B 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199) T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHSCCC-------CCCEEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE T ss_pred cCCCeEEEEECCCCCCHHHHHHHHhcCccccCCcccceEEEEEEEEEECCEEEEEEEEeCCCCHHHHHhhHHHHccCCEE Confidence 45678999999999999999999986654322222221111 11222333446788999999887777788888899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) ++|+|+++..++..... +...+... ....|+++++||.|+.......... ..........+... ...++++ T Consensus 105 i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~pvliv~nK~D~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~ 176 (199) T 2P5S_B 105 LLLYDVTCEKSFLNIRE-WVDMIEDAAHETVPIMLVGNKADIRDTAATEGQK------CVPGHFGEKLAMTY-GALFCET 176 (199) T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHC---CCEEEEEECGGGHHHHHHTTCC------CCCHHHHHHHHHHH-TCEEEEC T ss_pred EEEEeCCCHHHHHHHHH-HHHHHHHHccCCCcEEEEEEhhhccccccccccc------eechHHHHHHHHHH-CCEEEEe Confidence 99999998766655533 33333222 2468999999999987532111000 00001111111111 2357789 Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184) |++++.++.++|+++.+.+. T Consensus 177 S~~~~~~i~~~~~~l~~~~~ 196 (199) T 2P5S_B 177 SAKDGSNIVEAVLHLAREVK 196 (199) T ss_dssp CTTTCTTHHHHHHHHHHHHH T ss_pred eCCCCCCHHHHHHHHHHHHH Confidence 99999999999999887664
##### No 95 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1Z0J_A Ras-related protein Rab-22A, FYVE-finger-containing Rab5; Rab Effector, Rab GTPase, Rab22; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 Probab=99.75 E-value=2.1e-22 Score=133.53 Aligned_cols=165 Identities=22% Similarity=0.395 Sum_probs=106.2 Template_Neff=12.200 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) .+..+|+++|+.++|||+|++++..........++..... ............+.+||++|.+.+...+..++..+++++ T Consensus 4 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 83 (170) T 1Z0J_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170) T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTSEEEE T ss_pred ccceEEEEECCCCCChHHHHHHHhCCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEeCCCcHHHHhhHhHHhccCCEEE Confidence 5678999999999999999999987655433222211111 111122233457889999999888878888888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) +|+|+.+...+......+..+........|+++++||.|+....... ......++.... ..++++|+ T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~k~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s~ 150 (170) T 1Z0J_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVM------------ERDAKDYADSIH-AIFVETSA 150 (170) T ss_dssp -EEETTCHHHHHHHHHHHHHHHHHSCTTS----EEECTTCGGGCCSC------------HHHHHHHHHHTT-CEEEECBT T ss_pred EEeeCCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCccCCccccCC------------HHHHHHHHHHhC-CCEEEeeC Confidence 99999987666555333333333333467888999999986532110 011111122222 56889999 Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184) +++.|+.++|.++.+.+.+ T Consensus 151 ~~~~~i~~~~~~l~~~~~~ 169 (170) T 1Z0J_A 151 KNAININELFIEISRRIPS 169 (170) T ss_dssp TTTBSHHHHHHHHHHHCCC T ss_pred CCCCCHHHHHHHHHHhccC Confidence 9999999999999887654
##### No 96 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2ERY_B Ras-related protein R-Ras2; RRAS2, GDP/GTP binding, GTP hydrolysis; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 Probab=99.75 E-value=2.2e-22 Score=134.03 Aligned_cols=164 Identities=30% Similarity=0.472 Sum_probs=112.0 Template_Neff=11.800 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) ....+++++|.+|+||||+++++..........++...........++....+.+||++|...+...+..++..+|++++ T Consensus 3 ~~~~~v~l~G~~~~GKst~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~G~~~~~~~~~~~~~~~d~~il 82 (172) T 2ERY_B 3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL 82 (172) T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHCCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCSCCCCBTTBCCHHHHCSEEEE T ss_pred cccEEEEEECCCCCcHHHHHHHHHcCCcccccCCCccccEEEEEEECCEEEEEEEEeCCChhhhHhHHHHHHhhCCEEEE Confidence 35789999999999999999999876554333333222222222334445678999999988887778888889999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) |+++.+..++......+....... ....|+++++||.|+....... ......++...+ ..++.+|+ T Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vilv~nk~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s~ 149 (172) T 2ERY_B 83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVT------------QEEGQQLARQLK-VTYMEASA 149 (172) T ss_dssp EEETTCHHHHTTHHHHHHHHHHHHTCSCCCEEEEEECTTCGGGCSSC------------HHHHHHHHHHTT-CEEEECBT T ss_pred EEeCCChHhHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccC------------HHHHHHHHHHhC-CCEEEccc Confidence 999998666666544443333221 2367999999999986532110 111111222222 57899999 Q sequence1 165 KTKDGVREVFEMATRAAL 182 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~~ 182 (184) +.+.++.+++.++...+. T Consensus 150 ~~~~~i~~~~~~l~~~~~ 167 (172) T 2ERY_B 150 KIRMNVDQAFHELVRVIR 167 (172) T ss_dssp TTTBSHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHH Confidence 999999999999887664
##### No 97 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6IF3_B Arf-GAP with coiled-coil, ANK repeat; Rab35, ACAP2, complex, cryatal structure; HET: GTP; 1.5A {Homo sapiens} Probab=99.75 E-value=2.5e-22 Score=135.47 Aligned_cols=166 Identities=31% Similarity=0.563 Sum_probs=105.7 Template_Neff=11.700 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) +.....++|+++|.+++|||||++.+..........++..... .......+....+.+||++|+..+...+..+...++ T Consensus 9 ~~~~~~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 88 (186) T 6IF3_B 9 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGLERFRTITSTYYRGTH 88 (186) T ss_dssp CSSSEEEEEEEEECTTSSHHHH---HHSC-----CCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCCHHHHHTTCS T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHhCCCCCCcccceeEEEEEEEEEEECCEEEEEEEEeCCCChhhHHHHHHHhcCCC Confidence 3456778999999999999999999987654332222221111 112223334568899999999877777888888999 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184) ++++|+|+++..++..... |...+.......|+++++||.|+....... ......++.... +.+++ T Consensus 89 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~ivv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~ 154 (186) T 6IF3_B 89 GVIVVYDVTSAESFVNVKR-WLHEINQNCDDVCRILVGNKNDDPERKVVE------------TEDAYKFAGQMG-IQLFE 154 (186) T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHCSSCEEEEEEECCCCG-GGCCS------------CHHHHHHHHHHT-CEEEE T ss_pred EEEEEEeCCCHHHHHHHHH-HHHHHHHHCCCCCEEEEEeCCCCCCCCCCC------------HHHHHHHHHHhC-CCEEE Confidence 9999999988766655533 333333333467899999999986532110 011111111222 56789 Q sequence1 162 CSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~ 182 (184) +|++++.++.++|+++.+.+. T Consensus 155 ~s~~~~~~i~~~~~~l~~~~~ 175 (186) T 6IF3_B 155 TSAKENVNVEEMFNCITELVL 175 (186) T ss_dssp CBTTTTBSHHHHHHHHHHHHH T ss_pred eeCCCCCCHHHHHHHHHHHHH Confidence 999999999999998877664
##### No 98 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1KAO_A RAP2A, GUANOSINE-5'-DIPHOSPHATE; GTP-BINDING PROTEIN, SMALL G PROTEIN; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 Probab=99.75 E-value=2.7e-22 Score=132.29 Aligned_cols=164 Identities=32% Similarity=0.493 Sum_probs=108.5 Template_Neff=12.500 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC 86 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (184) +..+++++|..++|||||++++..........++.................+.+||++|.+.+...+..++..+++++++ T Consensus 2 ~~~~i~vvG~~~~GKstl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (167) T 1KAO_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167) T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCccccCCCchhceEEEEEECCeeEEEEEEECCCChhhHhhHHHHhccCCEEEEE Confidence 46799999999999999999888665433222222111122222333456789999999887777777788899999999 Q sequence1 87 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184) Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184) ++..+...+......+....... ....|+++++||.|+....... ...........+ ..++.+|+. T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~nk~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s~~ 148 (167) T 1KAO_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVS------------SSEGRALAEEWG-CPFMETSAK 148 (167) T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSC------------HHHHHHHHHHHT-SCEEEECTT T ss_pred EeCCCHHHHHhHHHHHHHHHHhhccCCCCEEEEEeCCCCcccccCC------------HHHHHHHHHHHC-CCEEEecCC Confidence 99998665555433333222211 1367899999999986532110 011111112222 578899999 Q sequence1 166 TKDGVREVFEMATRAALQ 183 (184) Q Consensus 166 ~~~~i~~~~~~~~~~~~~ 183 (184) ++.++.++|+++...+.+ T Consensus 149 ~~~~i~~l~~~l~~~~~~ 166 (167) T 1KAO_A 149 SKTMVDELFAEIVRQMNY 166 (167) T ss_dssp CHHHHHHHHHHHHHHHHH T ss_pred CchhHHHHHHHHHHHHhc Confidence 999999999998877654
##### No 99 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1Z08_C Ras-related protein Rab-21; Rab GTPase, Rab21, Vesicular trafficking; HET: GNP; 1.8A {Homo sapiens} SCOP: c.37.1.8 Probab=99.74 E-value=3e-22 Score=132.63 Aligned_cols=166 Identities=27% Similarity=0.495 Sum_probs=109.3 Template_Neff=12.300 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) .+...+|+++|.+++||||+++++..........++....+ .......+....+.+||++|...+...+..++..++++ T Consensus 3 ~~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 82 (170) T 1Z08_C 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170) T ss_dssp -CEEEEEEEEECTTSCHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEEETTEEEEEEEEECCCGGGGGGTCGGGTTTCSEE T ss_pred ccceEEEEEECCCCCCHHHHHHHHhCCCCCcCCCCcceeeEEEEEEEECCEEEEEEEEeCCCChHhhhchhhhhcCCCEE Confidence 35688999999999999999999986644332222221111 11122233456789999999887777777788899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|++.+++.++......+...........|+++++||.|+....... ......++... ...++.+| T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~d~~~~~~~~------------~~~~~~~~~~~-~~~~~~~s 149 (170) T 1Z08_C 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS------------IQEAESYAESV-GAKHYHTS 149 (170) T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSC------------HHHHHHHHHHT-TCEEEECB T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCCccCCC------------HHHHHHHHHHh-CCeEEEEe Confidence 999999887665554332222222222357899999999987642110 01111112222 24678899 Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184) +.++.++.++|+++.+.+++ T Consensus 150 ~~~~~~i~~~~~~l~~~~~~ 169 (170) T 1Z08_C 150 AKQNKGIEELFLDLCKRMIE 169 (170) T ss_dssp TTTTBSHHHHHHHHHHHHHC T ss_pred ccCCCCHHHHHHHHHHHHhc Confidence 99999999999999887764
##### No 100 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2HUP_A Crystal structure of human RAB43; G-PROTEIN, RAB, GDP, STRUCTURAL GENOMICS; HET: GDP; 2.05A {Homo sapiens} Probab=99.74 E-value=3.3e-22 Score=136.67 Aligned_cols=168 Identities=27% Similarity=0.415 Sum_probs=109.9 Template_Neff=11.500 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) ...+.++|+++|.+++|||+|++++..........++....+ .......+....+.+||++|...+...+..+...+|+ T Consensus 25 ~~~~~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 104 (201) T 2HUP_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG 104 (201) T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE T ss_pred CCcceEEEEEECCCCCCHHHHHHHHhCCCCCcccCcccccceEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhccCCE Confidence 346778999999999999999999987655432222221111 1122233345678999999988777777777888999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++|+|.+.+.++......+...........|+++++||.|+....... ......++...+...++++ T Consensus 105 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nk~d~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 172 (201) T 2HUP_A 105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVS------------LAEAQSLAEHYDILCAIET 172 (201) T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHTTCSEEEEC T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCCcccCC------------HHHHHHHHHHhCCCCEEEe Confidence 9999999987666655333333222222578999999999987532110 1111122233333578999 Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184) |++++.++.++|.++.+.+.+ T Consensus 173 S~~~~~~v~~~~~~l~~~i~~ 193 (201) T 2HUP_A 173 SAKDSSNVEEAFLRVATELIM 193 (201) T ss_dssp BTTTTBSHHHHHHHHHHHHHH T ss_pred eCCCCCCHHHHHHHHHHHHHH Confidence 999999999999998887653
##### No 101 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2X77_A ADP-RIBOSYLATION FACTOR; GTP-BINDING PROTEIN, SMALL GTPASE, NUCLEOTIDE-BINDING; HET: GDP; 2.1A {LEISHMANIA MAJOR} Probab=99.74 E-value=3.3e-22 Score=135.87 Aligned_cols=165 Identities=18% Similarity=0.253 Sum_probs=110.2 Template_Neff=10.800 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ...+.++|+++|.+++|||||++++......... ++....+ . ......+.+.+||++|+..+...+..++..+|++ T Consensus 18 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~-~t~~~~~-~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 93 (189) T 2X77_A 18 PADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTV-PTVGVNL-E--TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAV 93 (189) T ss_dssp CTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEEC-SSTTCCE-E--EEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEE T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHhcCCccccC-CccceEE-E--EEEECCEEEEEEECCCCcccHHHHHHhcCCCCEE Confidence 3466789999999999999999999866543221 1111111 1 1222356789999999988887888888899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) ++|+|+++..++......+...+... ....|+++|+||+|+....... .... ....... ....+.++.+ T Consensus 94 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vilv~nk~D~~~~~~~~-~~~~--------~~~~~~~-~~~~~~~~~~ 163 (189) T 2X77_A 94 IYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEA-EIAE--------QLGVSSI-MNRTWTIVKS 163 (189) T ss_dssp EEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHH-HHHH--------HTTGGGC-CSSCEEEEEC T ss_pred EEEEECCChHhHHHHHHHHHHHhccHHhcCCEEEEEEECCCCCCCCCHH-HHHH--------HhCChhH-cCCCEEEEEC Confidence 99999998776666544444443322 2368899999999987632111 1000 0000000 1112467899 Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184) |+.++.|+.+++.++...+. T Consensus 164 s~~~~~~v~~~~~~l~~~~~ 183 (189) T 2X77_A 164 SSKTGDGLVEGMDWLVERLR 183 (189) T ss_dssp CTTTCTTHHHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHH Confidence 99999999999999887654
##### No 102 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6IF2_B Ras-related protein Rab-35, Iporin; Rab35, RUSC2, complex, ENDOCYTOSIS; HET: GTP; 2.4A {Homo sapiens} Probab=99.74 E-value=3.8e-22 Score=134.74 Aligned_cols=167 Identities=30% Similarity=0.555 Sum_probs=112.3 Template_Neff=11.600 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) +...+.++|+++|.+++|||||++++..........++....+ .......+....+.+||++|+..+...+..++..+| T Consensus 9 ~~~~~~~~i~~~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d 88 (186) T 6IF2_B 9 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGLERFRTITSTYYRGTH 88 (186) T ss_dssp CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCCHHHHHTTCC T ss_pred cccceeEEEEEECCCCCCHHHHHHHHhcCCCCCCceeeEEEEEEEEEEEECCEEEEEEEEeCCCChhhHhhHHHHccCCC Confidence 4456789999999999999999999987654332222221111 122233344568899999999888888888888999 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184) ++++|+++++..++.... .|...........|+++++||.|+....... .......+... .+.++. T Consensus 89 ~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vv~nk~D~~~~~~~~------------~~~~~~~~~~~-~~~~~~ 154 (186) T 6IF2_B 89 GVIVVYDVTSAESFVNVK-RWLHEINQNCDDVCRILVGNKNDDPERKVVE------------TEDAYKFAGQM-GIQLFE 154 (186) T ss_dssp EEEEEEETTCHHHHHTHH-HHHHHHHHHCSSCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHT-TCEEEE T ss_pred EEEEEEeCCChHHHHHHH-HHHHHHHHhCCCCeEEEEEecCCCcccccCC------------HHHHHHHHHHh-CCcEEE Confidence 999999998876666553 3333333333467899999999987532110 01111111122 256889 Q sequence1 162 CSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~~ 183 (184) +|++++.++.++++++...+.+ T Consensus 155 ~s~~~~~~i~~~~~~l~~~~~~ 176 (186) T 6IF2_B 155 TSAKENVNVEEMFNCITELVLR 176 (186) T ss_dssp CBTTTTBSHHHHHHHHHHHHHH T ss_pred eeCCCCCCHHHHHHHHHHHHHH Confidence 9999999999999988876643
##### No 103 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1WA5_A GTP-BINDING NUCLEAR PROTEIN RAN, IMPORTIN; NUCLEAR TRANSPORT-COMPLEX, NUCLEAR TRANSPORT, EXPORTIN; HET: GTP; 2.0A {CANIS FAMILIARIS} SCOP: c.37.1.8 Probab=99.74 E-value=3.8e-22 Score=133.09 Aligned_cols=164 Identities=26% Similarity=0.457 Sum_probs=111.1 Template_Neff=12.100 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) ......+|+++|..++|||+|++++..........++..... ............+.+||++|.......+..++..+|+ T Consensus 6 ~~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 85 (176) T 1WA5_A 6 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 85 (176) T ss_dssp -CCSEEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTGGGGGTTCCE T ss_pred CCcccEEEEEECCCCCCHHHHHHHHhCCCCCCcccCcccceEEEEEEEECCcEEEEEEEeCCCCcchhhhhHHHhhcCCE Confidence 446678999999999999999999887654433222211111 1111222345678999999988777777778889999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++|+++++..++...... ...+.......|+++++||.|+....... ....++...+ ..++++ T Consensus 86 ~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~~k~d~~~~~~~~--------------~~~~~~~~~~-~~~~~~ 149 (176) T 1WA5_A 86 AIIMFDVTSRVTYKNVPNW-HRDLVRVCENIPIVLCGNKVDIKDRKVKA--------------KSIVFHRKKN-LQYYDI 149 (176) T ss_dssp EEEEEETTCHHHHHTHHHH-HHHHHHHSSSCCEEEEEECTTSSCCSSCT--------------TTCCHHHHHT-CEEEEC T ss_pred EEEEEeCCChHHHHHHHHH-HHHHHHHCCCCCEEEEEechhcCCccCCH--------------HHHHHHHHcC-CCEEEc Confidence 9999999987666655333 33332222478999999999987632110 0011122222 678999 Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184) |++++.++.++|.++.+.+.+ T Consensus 150 s~~~~~~v~~~~~~l~~~~~~ 170 (176) T 1WA5_A 150 SAKSNYNFEKPFLWLARKLIG 170 (176) T ss_dssp CTTTCTTTTHHHHHHHHHHHT T ss_pred cCCCCCCHHHHHHHHHHHHHH Confidence 999999999999998887653
##### No 104 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3NKV_A Ras-related protein Rab-1B; posttranslational modification, AMPylation, adenylylation, Rab1b; HET: GNP, AMP; 1.7A {Homo sapiens} Probab=99.74 E-value=3.9e-22 Score=132.92 Aligned_cols=165 Identities=27% Similarity=0.507 Sum_probs=109.8 Template_Neff=12.100 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ..+..+|+++|++++|||||++++..........++....+ .......+....+.+||++|...+...+..++..++++ T Consensus 6 ~~~~~~i~l~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~i 85 (175) T 3NKV_A 6 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 85 (175) T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCSEE T ss_pred ccceEEEEEECCCCCCHHHHHHHHcCCCCCccccccceeeEEEEEEEECCEEEEEEEEeCCCChhhHhhchHHccCCcEE Confidence 35678999999999999999999987654333222221111 12222233446788999999887777777778899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|+|+++..++......+...........|+++++||.|+........ .....++... .+.++.+| T Consensus 86 v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~k~d~~~~~~~~~------------~~~~~~~~~~-~~~~~~~s 152 (175) T 3NKV_A 86 IVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDN------------TTAKEFADSL-GIPFLETS 152 (175) T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH------------HHHHHHHHHH-TCCEEECC T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHccCCCcEEEEEechhcCCCcccCH------------HHHHHHHHHH-CCCEEEee Confidence 9999999876665543333222222224578999999999876421110 0111122222 25688999 Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184) +.++.++.++|.++.+.+. T Consensus 153 ~~~~~~i~~~~~~l~~~~~ 171 (175) T 3NKV_A 153 AKNATNVEQAFMTMAAEIK 171 (175) T ss_dssp TTTCTTHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHH Confidence 9999999999999887764
##### No 105 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4HLQ_B TBC1 domain family member 20; Rab1b, RabGAP, Fluorides, GTPase-Activating Proteins; HET: GDP, SO4, BEF; 3.3A {Homo sapiens} Probab=99.74 E-value=3.9e-22 Score=132.92 Aligned_cols=165 Identities=27% Similarity=0.507 Sum_probs=109.8 Template_Neff=12.100 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ..+..+|+++|++++|||||++++..........++....+ .......+....+.+||++|...+...+..++..++++ T Consensus 6 ~~~~~~i~l~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~i 85 (175) T 4HLQ_B 6 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 85 (175) T ss_dssp CSEEEEEEEEECSSSSHHHHHHHHHTCCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE T ss_pred ccceEEEEEECCCCCCHHHHHHHHcCCCCCccccccceeeEEEEEEEECCEEEEEEEEeCCCChhhHhhchHHccCCcEE Confidence 35678999999999999999999987654333222221111 12222233446788999999887777777778899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|+|+++..++......+...........|+++++||.|+........ .....++... .+.++.+| T Consensus 86 v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~k~d~~~~~~~~~------------~~~~~~~~~~-~~~~~~~s 152 (175) T 4HLQ_B 86 IVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDN------------TTAKEFADSL-GIPFLETS 152 (175) T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCCTTCCSCH------------HHHHHHHHHH-TCCEEEEB T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHccCCCcEEEEEechhcCCCcccCH------------HHHHHHHHHH-CCCEEEee Confidence 9999999876665543333222222224578999999999876421110 0111122222 25688999 Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184) +.++.++.++|.++.+.+. T Consensus 153 ~~~~~~i~~~~~~l~~~~~ 171 (175) T 4HLQ_B 153 AKNATNVEQAFMTMAAEIK 171 (175) T ss_dssp SSSSTBHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHH Confidence 9999999999999887764
##### No 106 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2ERX_A GTP-binding protein Di-Ras2; DIRAS2, GTP hydrolysis, TRANSPORT PROTEIN; HET: GDP, PO4; 1.65A {Homo sapiens} SCOP: c.37.1.8 Probab=99.74 E-value=3.9e-22 Score=132.56 Aligned_cols=163 Identities=28% Similarity=0.432 Sum_probs=108.9 Template_Neff=12.100 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC 86 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (184) ...+|+++|..|+||||+++++....+.....++....+......+.....+.+||++|.+.+...+..++..++++++| T Consensus 2 ~~~~i~v~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~v~v 81 (172) T 2ERX_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172) T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE T ss_pred CCeEEEEECCCCCCHHHHHHHHhcCCCCcccCCCcccceEEEEEeCCEEEEEEEEECCCCCCchhhhhHHcccCCEEEEE Confidence 46789999999999999999998765443333332222222223333456789999999888877788888899999999 Q sequence1 87 FSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) +++++..++......+....... ....|+++++||+|+........ .......... ...++++|+ T Consensus 82 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~k~D~~~~~~~~~------------~~~~~~~~~~-~~~~~~~s~ 148 (172) T 2ERX_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQS------------SEAEALARTW-KCAFMETSA 148 (172) T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCH------------HHHHHHHHHH-TCEEEECBT T ss_pred eeCCChHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCcccCCH------------HHHHHHHHHh-CCcEEEeec Confidence 99998766665544443332211 13689999999999876421110 0011111112 256788999 Q sequence1 165 KTKDGVREVFEMATRAAL 182 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~~ 182 (184) +++.++.++|+++.+.+. T Consensus 149 ~~~~~~~~~~~~l~~~~~ 166 (172) T 2ERX_A 149 KLNHNVKELFQELLNLEK 166 (172) T ss_dssp TTTBSHHHHHHHHHHTCC T ss_pred CCCccHHHHHHHHHHHHH Confidence 999999999998877653
##### No 107 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2CE2_X GTPASE HRAS; SIGNALING PROTEIN, GUANINE NUCLEOTIDE BINDING; HET: XY2, GDP; 1.0A {HOMO SAPIENS} Probab=99.74 E-value=4e-22 Score=131.44 Aligned_cols=163 Identities=33% Similarity=0.522 Sum_probs=109.2 Template_Neff=12.400 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC 86 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (184) +..+|+++|++++|||||++++..........++............+....+.+||++|...+...+..+...+++++++ T Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (166) T 2CE2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166) T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCcccCccCCCccceeEEEEEECCEEEEEEEEECCCchhhHhhHHHHhhhCCEEEEE Confidence 45799999999999999999998665433222222222222223333456788999999888877788888889999999 Q sequence1 87 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184) Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184) +++.+..++......+....... ....|+++++||.|......... ....++...+ ..++.+|+. T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~~k~d~~~~~~~~~-------------~~~~~~~~~~-~~~~~~s~~ 147 (166) T 2CE2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESR-------------QAQDLARSYG-IPYIETSAK 147 (166) T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHH-------------HHHHHHHHHT-CCEEEECTT T ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCCcEEEEEehhhcccCccCHH-------------HHHHHHHHhC-CCEEEEeCC Confidence 99998766655433333322211 23689999999999875321111 1111112222 467889999 Q sequence1 166 TKDGVREVFEMATRAALQ 183 (184) Q Consensus 166 ~~~~i~~~~~~~~~~~~~ 183 (184) ++.++.++++++...+.+ T Consensus 148 ~~~~i~~~~~~i~~~~~~ 165 (166) T 2CE2_X 148 TRQGVEDAFYTLVREIRQ 165 (166) T ss_dssp TCTTHHHHHHHHHHHHHT T ss_pred CCccHHHHHHHHHHHHHc Confidence 999999999999887764
##### No 108 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1VG8_C Ras-related protein Rab-7; GTP-binding protein, PROTEIN TRANSPORT; HET: GNP; 1.7A {Rattus norvegicus} SCOP: c.37.1.8 Probab=99.74 E-value=4.1e-22 Score=137.06 Aligned_cols=167 Identities=26% Similarity=0.460 Sum_probs=108.9 Template_Neff=11.200 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) .+....+|+++|..++|||+|++++....+.....++....+ ...+........+.+||++|+..+...+..+...+|+ T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (207) T 1VG8_C 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207) T ss_dssp ---CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEEETTEEEEEEEEECCSSGGGCCSCCGGGTTCSE T ss_pred ccceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHhhhHHHhcCCCE Confidence 456678999999999999999999987765433222221111 1122223345678999999988777777777788999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKH----FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFG 158 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184) +++|+|+++..++......+...... .....|+++|+||.|+........ ............. T Consensus 84 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~~k~D~~~~~~~~~-------------~~~~~~~~~~~~~ 150 (207) T 1VG8_C 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATK-------------RAQAWCYSKNNIP 150 (207) T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHH-------------HHHHHHHHTTSCC T ss_pred EEEEEeCCChhHHHhHHHHHHHHHHHcCCCCccCCcEEEEEechhhcccccCHH-------------HHHHHHHHcCCCC Confidence 99999999876665543333322211 113678999999999865321100 0011111122356 Q sequence1 159 YMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 159 ~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) ++++|+.++.|+.++|.++...+.+ T Consensus 151 ~~~~S~~~~~~i~~~~~~l~~~~~~ 175 (207) T 1VG8_C 151 YFETSAKEAINVEQAFQTIARNALK 175 (207) T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHH T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHh Confidence 8899999999999999998877653
##### No 109 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2BCG_Y Secretory pathway GDP dissociation inhibitor; RabGTPase, geranylgeranylation, vesicular transport, Protein; HET: GER, GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Probab=99.74 E-value=4.5e-22 Score=136.97 Aligned_cols=166 Identities=27% Similarity=0.528 Sum_probs=109.7 Template_Neff=10.800 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) +.....++|+++|++++|||+|++++..........++....+ .......+..+.+.+||++|++.+...+..++..++ T Consensus 3 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d 82 (206) T 2BCG_Y 3 SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSH 82 (206) T ss_dssp CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCS T ss_pred cccceeEEEEEECCCCCCHHHHHHHHhcCCCCCCCccccceEEEEEEEEECCEEEEEEEEeCCCchHHHHHhHHHhcCCC Confidence 4456778999999999999999999886654433322221111 112222334567889999998887777777888899 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184) ++++|+|+++..++..... +...+.. .....|+++|+||.|+........ .....++.. ....++ T Consensus 83 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~ilv~nK~D~~~~~~~~~------------~~~~~~~~~-~~~~~~ 148 (206) T 2BCG_Y 83 GIIIVYDVTDQESFNGVKM-WLQEIDRYATSTVLKLLVGNKCDLKDKRVVEY------------DVAKEFADA-NKMPFL 148 (206) T ss_dssp EEEEEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH------------HHHHHHHHH-TTCCEE T ss_pred EEEEEEeCCCHHHHhHHHH-HHHHHHHHCCCCcEEEEEEeCcccCccccCCH------------HHHHHHHHH-CCCCEE Confidence 9999999998776665533 3332221 223578899999999865321100 001111111 125678 Q sequence1 161 ECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ++|+.++.++.++|.++.+.+. T Consensus 149 ~~S~~~~~~~~~~~~~l~~~~~ 170 (206) T 2BCG_Y 149 ETSALDSTNVEDAFLTMARQIK 170 (206) T ss_dssp ECCTTTCTTHHHHHHHHHHHHH T ss_pred EeeCCCCCCHHHHHHHHHHHHH Confidence 9999999999999988887664
##### No 110 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1Z2A_A Ras-related protein Rab-23; Rab GTPase, Rab23, Vesicular trafficking; HET: GDP; 1.9A {Mus musculus} SCOP: c.37.1.8 Probab=99.74 E-value=4.7e-22 Score=131.98 Aligned_cols=164 Identities=31% Similarity=0.497 Sum_probs=110.1 Template_Neff=11.800 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ....+|+++|.+++|||+|++++....+.....++.... ........+....+.+||++|++.+...+..+...+++++ T Consensus 3 ~~~~~i~~~G~~~~GKs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (168) T 1Z2A_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168) T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCCCCCccceeEEEEEEEEECCEEEEEEEEeCCCcHHhHHhcHHHhcCCCEEE Confidence 457899999999999999999998765543322221111 1222233344567889999999888777777888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) +|+|+++..++......+...... ....|+++++||.|+........ .......... ...++.+|+ T Consensus 83 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~ivv~~k~d~~~~~~~~~------------~~~~~~~~~~-~~~~~~~s~ 148 (168) T 1Z2A_A 83 LVFSTTDRESFEAISSWREKVVAE-VGDIPTALVQNKIDLLDDSCIKN------------EEAEGLAKRL-KLRFYRTSV 148 (168) T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-HCSCCEEEEEECGGGGGGCSSCH------------HHHHHHHHHH-TCEEEECBT T ss_pred EEEeCCCHHHHHHHHHHHHHHHHH-hCCCCEEEEEeCccCCCcccCCH------------HHHHHHHHHc-CCeEEEeeC Confidence 999999876666554333333322 24689999999999876322100 0011111111 246788999 Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184) +++.++.++|+++.+.+++ T Consensus 149 ~~~~~i~~~~~~l~~~~~~ 167 (168) T 1Z2A_A 149 KEDLNVSEVFKYLAEKHLQ 167 (168) T ss_dssp TTTBSSHHHHHHHHHHHHC T ss_pred CCCCCHHHHHHHHHHHHhc Confidence 9999999999998887754
##### No 111 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2YC4_C INTRAFLAGELLAR TRANSPORT PROTEIN 25, SMALL; TRANSPORT PROTEIN, CILIUM, IFT COMPLEX; 2.8A {CHLAMYDOMONAS REINHARDTII} Probab=99.74 E-value=4.8e-22 Score=136.41 Aligned_cols=168 Identities=23% Similarity=0.302 Sum_probs=103.7 Template_Neff=11.700 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKD--QFPEVYVPTVFENY-VADIEVDG--KQVELALWDTAGLEDYDRLRPLSYP 78 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~--~~~~~~~~t~~~~~-~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~ 78 (184) .....++|+++|++++|||+|++++... .+.....++....+ .......+ ..+.+.+||++|++.+...+..++. T Consensus 16 ~~~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 95 (208) T 2YC4_C 16 TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN 95 (208) T ss_dssp SEEEEEEEEEESCGGGCHHHHHHHHHC-----------------CEEEEECTTSSEEEEEEEEESSSSHHHHHHTSTTCC T ss_pred CccceeEEEEECCCCCCHHHHHHHHhcCCCccccccccceeeeEEEEEEECCCCCeEEEEEEEeCCCChHhHHHHHHHhc Confidence 3456789999999999999999999875 33333332222111 11122222 2457889999998888777777888 Q sequence1 79 DTDVILMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIG 155 (184) Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184) .+|++++|+|+.+..++......+....... ....|+++|+||.|+...... ........++...+ T Consensus 96 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~v~~k~d~~~~~~~-----------~~~~~~~~~~~~~~ 164 (208) T 2YC4_C 96 GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ-----------VRLDMAQDWATTNT 164 (208) T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEEC---CCCSSC-----------CCHHHHHHHHHHTT T ss_pred CCCEEEEEEeCCChHHHHhHHHHHHHHHHhCccCCCCceEEEEEeCCCCCChhhc-----------cCHHHHHHHHHhCC Confidence 9999999999998776666543333222221 126889999999998753211 01112222333333 Q sequence1 156 AFGYMECSAKT-KDGVREVFEMATRAALQ 183 (184) Q Consensus 156 ~~~~~~~s~~~-~~~i~~~~~~~~~~~~~ 183 (184) +.++++|+++ +.++.+++.++...+++ T Consensus 165 -~~~~~~s~~~~~~~i~~~~~~l~~~~~~ 192 (208) T 2YC4_C 165 -LDFFDVSANPPGKDADAPFLSIATTFYR 192 (208) T ss_dssp -CEEEECC-CCTTSSTHHHHHHHHHHHHH T ss_pred -CcEEEecCCCCCCCchHHHHHHHHHHHH Confidence 5689999999 99999999998887653
##### No 112 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1Z22_A Ras-related protein Rab-23; Rab GTPase, Rab23, Vesicular transport; HET: GDP; 2.06A {Mus musculus} SCOP: c.37.1.8 Probab=99.74 E-value=4.9e-22 Score=132.10 Aligned_cols=164 Identities=31% Similarity=0.489 Sum_probs=103.2 Template_Neff=11.600 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ....+++++|.+++|||+|++++....+.....++.... ........+....+.+||++|++.+...+..++..+|+++ T Consensus 3 ~~~~~i~i~G~~~~GKs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (168) T 1Z22_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168) T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCCCSE-------------EEEEECTTCSSCCHHHHHHHTTCCEEE T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCChhhHHhhhHHhcCCCEEE Confidence 457899999999999999999998765443322221111 1222233344567889999998887777777788999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) +|+|+++..++......+..... .....|+++++||.|+........ .......... ...++.+|+ T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~ivv~~k~d~~~~~~~~~------------~~~~~~~~~~-~~~~~~~s~ 148 (168) T 1Z22_A 83 LVFSTTDRESFEAISSWREKVVA-EVGDIPTALVQNKIDLLDDSCIKN------------EEAEGLAKRL-KLRFYRTSV 148 (168) T ss_dssp EEEETTBHHHHHTHHHHHHHHC-----SCCEEEEEECGGGGGGCSSCH------------HHHHHHHHHH-TCEEEECBT T ss_pred EEEeCCCHHHHHHHHHHHHHHHH-hCCCCCEEEEEeCCCCCccccCCH------------HHHHHHHHHh-CCCEEEeeC Confidence 99999986666555433333332 224689999999999876321100 0011111111 246788999 Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184) +++.++.++|+++...+++ T Consensus 149 ~~~~~i~~~~~~l~~~~~~ 167 (168) T 1Z22_A 149 KEDLNVSEVFKYLAEKHLQ 167 (168) T ss_dssp TTTBSSHHHHHHHHHHHHC T ss_pred CCCCCHHHHHHHHHHHHhc Confidence 9999999999998887754
##### No 113 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5JCZ_I Ras-related protein Rab-11A, Unconventional myosin-Va; myosin, complex, Rab, motor cargo; HET: EDO, GOL, BEF, GDP; 2.056A {Homo sapiens} Probab=99.74 E-value=4.9e-22 Score=132.32 Aligned_cols=167 Identities=28% Similarity=0.427 Sum_probs=111.6 Template_Neff=12.600 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) ...+.++|+++|+.++|||+|++++..........++....+ .......+....+.+||++|.+.+...+..+...+++ T Consensus 9 ~~~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 88 (179) T 5JCZ_I 9 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVG 88 (179) T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSCCCHHHHHHHHTTCCE T ss_pred hcceeEEEEEECCCCCChHHHHHHHccCCCCCCCCceeEEEEEEEEEEECCEEEEEEEEeCCCChhhhhhcHHHhCCCcE Confidence 346778999999999999999999987655432222211111 1122223345678899999988777777778888999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++|+++++..++......+...........|+++++||.|........ ......++.... ..++++ T Consensus 89 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~lv~~k~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~~ 155 (179) T 5JCZ_I 89 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP------------TDEARAFAEKNG-LSFIET 155 (179) T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHTT-CEEEEC T ss_pred EEEEEeCCChHHHHHHHHHHHHHHHhCCCCCeEEEEEecccchhhcCCC------------HHHHHHHHHHcC-CcEEEe Confidence 9999999886666555433333322222468999999999987632110 011111222222 468899 Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184) |++++.++.++|.++.+.+++ T Consensus 156 s~~~~~~i~~~~~~l~~~~~~ 176 (179) T 5JCZ_I 156 SALDSTNVEAAFQTILTEIYR 176 (179) T ss_dssp CTTTCTTHHHHHHHHHHHHHH T ss_pred eCCCCCCHHHHHHHHHHHHHh Confidence 999999999999999887653
##### No 114 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3BBP_C Ras-related protein Rab-6A, GRIP and; Golgi complex GRIP domain; HET: GTP; 3.0A {Homo sapiens} Probab=99.74 E-value=5e-22 Score=137.17 Aligned_cols=163 Identities=29% Similarity=0.447 Sum_probs=106.1 Template_Neff=10.900 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) .+..+|+++|++|+|||||++++..........+...... .......+....+.+||++|.+.+...+..++..+|+++ T Consensus 14 ~~~~~i~l~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~vi 93 (211) T 3BBP_C 14 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAV 93 (211) T ss_dssp ---CEEEEEESTTSSHHHHHHHHHTSCCCCSCCCCCSEEEEEEEEECSSSEEEEEEEEECCSSGGGTTHHHHHTTCSEEE T ss_pred cceEEEEEECCCCCCHHHHHHHHccCCCCccCCCcceeEEEEEEEEeCCEEEEEEEEeCCCcHHHHHHhHHHccCCCEEE Confidence 4678999999999999999999986654332222211111 111122233467899999998877777777788999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) +|+|+++..++......+...........|+++++||+|+....... .......+... ...++++|+ T Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~------------~~~~~~~~~~~-~~~~~~~S~ 160 (211) T 3BBP_C 94 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVS------------IEEGERKAKEL-NVMFIETSA 160 (211) T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGCTTCCSC------------HHHHHHHHHHT-TCEEEECBT T ss_pred EEEeCCCHHHHHHHHHHHHHHHHHcCCCCEEEEEeeccccccccCCC------------HHHHHHHHHHh-CCeEEEeec Confidence 99999987666665433333222223468999999999997532110 00011111111 246788999 Q sequence1 165 KTKDGVREVFEMATRAA 181 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~ 181 (184) .++.++.++|.++...+ T Consensus 161 ~~~~~i~~l~~~l~~~l 177 (211) T 3BBP_C 161 KAGYNVKQLFRRVAAAL 177 (211) T ss_dssp TTTBTHHHHHHHHHTTC T ss_pred CCCCCHHHHHHHHHHHH Confidence 99999999998887765
##### No 115 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3T1T_A Gliding protein mglA (E.C.3.6.5.2); G domain containg protein, bacterial; HET: GDP; 1.9A {Thermus thermophilus} Probab=99.74 E-value=5.1e-22 Score=135.17 Aligned_cols=165 Identities=27% Similarity=0.317 Sum_probs=107.1 Template_Neff=11.800 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV----------YVPTVFENYV-ADI-EVDGKQVELALWDTAGLEDYDR 71 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~----------~~~t~~~~~~-~~~-~~~~~~~~~~i~D~~g~~~~~~ 71 (184) ......+|+++|+.++|||+|++++........ ..++....+. ... ...+....+.+||++|++.+.. T Consensus 10 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 89 (198) T 3T1T_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198) T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHHSCGGGBCCCEEEECSSCEEEEEEECCTTCCCGGGCEEEEEEEECCSCCSCSH T ss_pred CCcccEEEEEECCCCCCHHHHHHHHhccCCcccCCceeccccccceeeeeEEEEeeecccCCeEEEEEEEeCCCCcccHH Confidence 345678999999999999999999987653311 1111111111 111 1123456788999999988887 Q sequence1 72 LRPLSYPDTDVILMCFSIDS------PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPE 145 (184) Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~------~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (184) .+..++..+|++++|+|.++ ..++..... +...........|+++++||.|+...... . T Consensus 90 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ilv~~k~D~~~~~~~--------------~ 154 (198) T 3T1T_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE-NLAEYGLTLDDVPIVIQVNKRDLPDALPV--------------E 154 (198) T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHH-HHHHTTCCTTSSCEEEEEECTTSTTCCCH--------------H T ss_pred HHHHHHccCCEEEEEEeCCchhhccCHHHHHHHHH-HHHHhCCCCCCCCEEEEEeCCCCCCCCCH--------------H Confidence 88888889999999999987 333333322 22222112246899999999998652111 1 Q sequence1 146 EGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 146 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) ....++.......++++|+.++.++.++|.++...+.. T Consensus 155 ~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~ 192 (198) T 3T1T_A 155 MVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198) T ss_dssp HHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHH T ss_pred HHHHHhCccCCeeEEEeeccCCCCHHHHHHHHHHHHHH Confidence 11122222233678899999999999999998887653
##### No 116 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4QXA_A Ras-related protein Rab-9A, Small G; PH domain, Rab9A, RUTBC2, Rab; HET: GTP; 2.3A {Mus musculus} Probab=99.74 E-value=5.1e-22 Score=135.73 Aligned_cols=169 Identities=31% Similarity=0.509 Sum_probs=109.8 Template_Neff=12.200 Q sequence1 2 AMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDT 80 (184) Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 80 (184) .+...+.++|+++|.+++|||+|++++..........++.... ....+...+....+.+||++|.+.+...+..++..+ T Consensus 2 ~~~~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~ 81 (208) T 4QXA_A 2 MAGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGLERFRSLRTPFYRGS 81 (208) T ss_dssp -----CEEEEEEEESTTSSHHHHHHHHHHCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCSGGGHHHHGGGTTTC T ss_pred CCCcceEEEEEEECCCCCCHHHHHHHHhCCCCCccceeeeeeeEEEEEEEECCEEEEEEEEeCCCChhhhccchhHhcCC Confidence 3556788999999999999999999998765433222221111 111222333456788999999888777788888899 Q sequence1 81 DVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184) Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184) |++++|+++.+..++......+....... ....|+++|+||.|+....... .....++..... T Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iilv~nk~D~~~~~~~~-------------~~~~~~~~~~~~ 148 (208) T 4QXA_A 82 DCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKERQVST-------------EEAQAWCKDNGD 148 (208) T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTSCEEEEEECTTCSSCSSCH-------------HHHHHHHHTTTC T ss_pred CEEEEEeeCCChHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEeeCCcCccccCCH-------------HHHHHHHHHcCC Confidence 99999999988765554433332222111 1367899999999987532111 111112222233 Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) +.++++|++++.++.++|.++...+.+ T Consensus 149 ~~~~~~s~~~~~~i~~~~~~l~~~~~~ 175 (208) T 4QXA_A 149 YPYFETSAKDSTNVAAAFEEAVRRILA 175 (208) T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHHH T ss_pred CCEEEeeCCCCccHHHHHHHHHHHHHh Confidence 678899999999999999998877653
##### No 117 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1UKV_Y Secretory pathway GDP dissociation inhibitor/GTP-binding; GTPase, Hydrolase, GDP dissociation inhibitor; HET: GER, GDP; 1.5A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Probab=99.73 E-value=6.2e-22 Score=136.30 Aligned_cols=166 Identities=25% Similarity=0.461 Sum_probs=109.7 Template_Neff=10.800 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) .....++|+++|.+++|||+|++++..........++....+ ......++....+.+||++|++.+...+..++..+++ T Consensus 4 ~~~~~~ki~l~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 83 (206) T 1UKV_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206) T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCHHHHTTCSE T ss_pred ccccceEEEEECCCCCCHHHHHHHHcCCCCCCCccceeeeeEEEEEEEECCEEEEEEEEeCCCCHHHHHhhHHHhcCCCE Confidence 456778999999999999999999987654433222221111 1122233334678899999988777777777888999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++|+|+++..++..+...+...........|+++++||.|+....... ......++... ...++++ T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~------------~~~~~~~~~~~-~~~~~~~ 150 (206) T 1UKV_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVE------------YDVAKEFADAN-KMPFLET 150 (206) T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC------------HHHHHHHHHHT-TCCEEEC T ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHHCCCCcEEEEEEechhcCCCCCCC------------HHHHHHHHHHC-CCCEEEe Confidence 9999999987777665433332222222356778999999987532110 01111111111 2568899 Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184) |+.++.++.+++.++...+. T Consensus 151 Sa~~~~~i~~~~~~i~~~~~ 170 (206) T 1UKV_Y 151 SALDSTNVEDAFLTMARQIK 170 (206) T ss_dssp CTTTCTTHHHHHHHHHHHHH T ss_pred eCCCCCCHHHHHHHHHHHHH Confidence 99999999999998887664
##### No 118 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3T1O_B Gliding protein mglA (E.C.3.6.5.2); G domain containing protein, bacterial; HET: GDP; 1.9A {Thermus thermophilus} Probab=99.73 E-value=6.5e-22 Score=134.83 Aligned_cols=165 Identities=27% Similarity=0.317 Sum_probs=106.5 Template_Neff=11.600 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV----------YVPTVFENYV-ADI-EVDGKQVELALWDTAGLEDYDR 71 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~----------~~~t~~~~~~-~~~-~~~~~~~~~~i~D~~g~~~~~~ 71 (184) ...+..+|+++|+.++|||+|++++........ ..++....+. ..+ ...+....+.+||++|++.+.. T Consensus 10 ~~~~~~~i~l~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 89 (198) T 3T1O_B 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198) T ss_dssp GTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCTTCCCCC-CEEEEEEEECCSCCCCSH T ss_pred CCcceEEEEEECCCCCCHHHHHHHHHhcCCcccCCceecccccceeEEEEEEeEeeecccCCcEEEEEEEeCCCCcccHH Confidence 345678999999999999999999987643321 1111111110 111 1123356789999999988887 Q sequence1 72 LRPLSYPDTDVILMCFSIDS------PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPE 145 (184) Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~------~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (184) .+..++..++++++|+|.++ ..++..... +...........|+++++||.|+...... . T Consensus 90 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ilv~~k~d~~~~~~~--------------~ 154 (198) T 3T1O_B 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE-NLAEYGLTLDDVPIVIQVNKRDLPDALPV--------------E 154 (198) T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHH-HHHHTTCCTTSSCEEEEEECTTCTTCCCH--------------H T ss_pred HHHHHHccCCEEEEEEeCCchhhccCHHHHHHHHH-HHHHhCCCCCCCCEEEEEeCCCCCCCCCH--------------H Confidence 78878889999999999996 333333322 22222112246899999999998652111 1 Q sequence1 146 EGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 146 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) ....++.......++++|+.++.++.++|.++.+.+.. T Consensus 155 ~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~ 192 (198) T 3T1O_B 155 MVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198) T ss_dssp HHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHH T ss_pred HHHHHhCccCCceEEEeecccCCCHHHHHHHHHHHHHH Confidence 11122222233678899999999999999998887653
##### No 119 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3T1T_C Gliding protein mglA (E.C.3.6.5.2); G domain containg protein, bacterial; HET: MSE, GDP; 1.9A {Thermus thermophilus} Probab=99.73 E-value=6.5e-22 Score=134.83 Aligned_cols=165 Identities=27% Similarity=0.317 Sum_probs=105.2 Template_Neff=11.600 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV----------YVPTVFENYV-ADI-EVDGKQVELALWDTAGLEDYDR 71 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~----------~~~t~~~~~~-~~~-~~~~~~~~~~i~D~~g~~~~~~ 71 (184) ...+..+|+++|+.++|||+|++++........ ..++....+. ..+ ...+....+.+||++|++.+.. T Consensus 10 ~~~~~~~i~l~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 89 (198) T 3T1T_C 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198) T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHHSCGGGBCCCEEEECSSCEEEEEEECCSCC------CEEEEEEECCSCCSCSH T ss_pred CCcceEEEEEECCCCCCHHHHHHHHHhcCCcccCCceecccccceeEEEEEEeEeeecccCCcEEEEEEEeCCCCcccHH Confidence 345678999999999999999999987643321 1111111110 111 1123356789999999988887 Q sequence1 72 LRPLSYPDTDVILMCFSIDS------PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPE 145 (184) Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~------~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (184) .+..++..++++++|+|.++ ..++..... +...........|+++++||.|+...... . T Consensus 90 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ilv~~k~d~~~~~~~--------------~ 154 (198) T 3T1T_C 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE-NLAEYGLTLDDVPIVIQVNKRDLPDALPV--------------E 154 (198) T ss_dssp HHHHHTTTCSEEEEEEECCGGGHHHHHHHHHHHHH-HHHTTTCCTTSSCEEEEEECTTSTTCCCH--------------H T ss_pred HHHHHHccCCEEEEEEeCCchhhccCHHHHHHHHH-HHHHhCCCCCCCCEEEEEeCCCCCCCCCH--------------H Confidence 78878889999999999996 333333322 22222112246899999999998652111 1 Q sequence1 146 EGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 146 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) ....++.......++++|+.++.++.++|.++.+.+.. T Consensus 155 ~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~ 192 (198) T 3T1T_C 155 MVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198) T ss_dssp HHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHH T ss_pred HHHHHhCccCCceEEEeecccCCCHHHHHHHHHHHHHH Confidence 11122222233678899999999999999998887653
##### No 120 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4M9Q_B ARF-like GTPase (E.C.3.6.5.2); GTPase, G domain, Joubert Syndrome; HET: GNP, SO4; 2.5A {Chlamydomonas reinhardtii} Probab=99.73 E-value=6.8e-22 Score=138.36 Aligned_cols=161 Identities=17% Similarity=0.251 Sum_probs=101.3 Template_Neff=9.800 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) .+.++|+++|.+++|||||++++.+..... ..++.... ..........+.+||++|...+...|..++..+|++++ T Consensus 2 ~~~~~I~l~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~---~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~ 77 (227) T 4M9Q_B 2 PRKITIALLGLDNAGKTTLLNSIQGEVDRD-TTPTFGFN---STTLNEGKYKIEVFDLGGGKNIRGVWKKYLAEVHAIVY 77 (227) T ss_dssp -CEEEEEEEECTTSSHHHHHHHHTTCCSCC-CCCCSSEE---EEEEEETTEEEEEEEECCSTTGGGGGGGTGGGCSEEEE T ss_pred CceEEEEEECCCCCCHHHHHHHHcCCCCCC-CCcccceE---EEEEecCCEEEEEEECCCCcchHHHHHHHHhhCCEEEE Confidence 357899999999999999999887553221 12221111 11222335688999999998888888889999999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) |+|+++..++......+...+... ....|+++++||.|+............ .....+ .....++.+|| T Consensus 78 VvD~s~~~~~~~~~~~l~~~l~~~~~~~~pilvv~NK~Dl~~~~~~~~i~~~---------~~~~~~--~~~~~~~~~sa 146 (227) T 4M9Q_B 78 VVDAADPGRFEESKMTMAEVLENQFMRDKPICIFANKQDLPTAAPAAEVVKG---------LGLATC--RNSHNVFPCTA 146 (227) T ss_dssp EEETTCGGGHHHHHHHHHHHHHSGGGTTCCEEEEEECTTSTTCCCHHHHHHH---------TTTTSC--CSCEEEEECCS T ss_pred EEeCCCccCHHHHHHHHHHHHhchhhcCCCEEEEEeCCCCCCCCCHHHHHHH---------cChhhc--CCccEEEECcC Confidence 999988766665544444443322 236899999999999753221110000 000001 11246788888 Q sequence1 165 KTKDG------VREVFEMATRAA 181 (184) Q Consensus 165 ~~~~~------i~~~~~~~~~~~ 181 (184) ..+.+ +.+.+.|+...+ T Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~i 169 (227) T 4M9Q_B 147 KMPAGQDVDHRLRDGLKWLVGTV 169 (227) T ss_dssp SCCTTCCCCHHHHHHHHHHHHHH T ss_pred cCCCCCCCCHHHHHHHHHHHHHH Confidence 87544 445566665544
##### No 121 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3GJ0_B GTP-binding nuclear protein Ran; G Protein, GDP, Acetylation, Cytoplasm; HET: GDP; 1.48A {Homo sapiens} Probab=99.73 E-value=6.8e-22 Score=137.32 Aligned_cols=164 Identities=26% Similarity=0.446 Sum_probs=106.4 Template_Neff=11.100 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) +......+|+++|..++|||+|++++....+.....++..... .......+....+.+||++|+..+...+..++..+| T Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 89 (221) T 3GJ0_B 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221) T ss_dssp ---CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECC------CCHHHHTTCC T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCcCcccceeeeEEEEEEEeCCcEEEEEEEECCCCccccccchhhcccCc Confidence 3456778999999999999999999887655332222221111 112222334568899999998888778888889999 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184) ++++|++.++..++......+.. +.......|+++++||.|+....... ....++...+ +.+++ T Consensus 90 ~vilv~d~~~~~s~~~~~~~~~~-i~~~~~~~~iilv~nk~D~~~~~~~~--------------~~~~~~~~~~-~~~~~ 153 (221) T 3GJ0_B 90 CAIIMFDVTSRVTYKNVPNWHRD-LVRVCENIPIVLCGNKVDIKDRKVKA--------------KSIVFHRKKN-LQYYD 153 (221) T ss_dssp EEEEEEETTCHHHHHTHHHHHHH-HHHHSTTCCEEEEEECTTSSSCSSCG--------------GGCCHHHHTT-CEEEE T ss_pred EEEEEeeCCChHHHhcHHHHHHH-HHHHcCCCCEEEEEeCCccccchhhH--------------HHHHHHHHcC-CcEEE Confidence 99999999987766665433333 32222478999999999997632110 0111122222 67899 Q sequence1 162 CSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~ 182 (184) +|++++.|+.++|.++...+. T Consensus 154 ~S~~~~~~i~~~~~~l~~~~~ 174 (221) T 3GJ0_B 154 ISAKSNYNFEKPFLWLARKLI 174 (221) T ss_dssp CBGGGTBTTHHHHHHHHHHHH T ss_pred ccCCCCCChHHHHHHHHHHHh Confidence 999999999999999887764
##### No 122 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4ILE_A ADP-ribosylation factor-like protein 8A; GTPase, MEMBRANE TRAFFICKING, TRANSPORT PROTEIN; HET: GDP; 2.676A {Homo sapiens} Probab=99.73 E-value=6.9e-22 Score=133.73 Aligned_cols=164 Identities=20% Similarity=0.283 Sum_probs=107.3 Template_Neff=10.900 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ..+.++|+++|.+++|||||++++....+.....++.... ... .......+.+||++|+..+...+..++..+++++ T Consensus 19 ~~~~~~i~i~G~~~~GKtsl~~~l~~~~~~~~~~~t~~~~-~~~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii 95 (184) T 4ILE_A 19 WKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFN-MRK--ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (184) T ss_dssp HTSCCEEEEEESTTSSHHHHHHHHTTTCCEEEESSSTTCS-CEE--EEETTEEEEEEETTTCGGGHHHHHHHTTTCSCEE T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceE-EEE--EecCCEEEEEEeCCCCHHHHHHHHHHhcCCCEEE Confidence 4567899999999999999999998766544333322111 111 1223467899999998877777777888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) +|+|+++..++......+....... ....|+++|+||+|+............ ........ ....++++| T Consensus 96 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~s 165 (184) T 4ILE_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEK---------MNLSAIQD-REICCYSIS 165 (184) T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHH---------TTGGGCCS-SCEEEEECB T ss_pred EEEecCCHHHHHHHHHHHHHHhcChhhCCCcEEEEEeCCCCCCCCCHHHHHHH---------cChhHhcC-CcEEEEEee Confidence 9999988655544444344333221 236889999999999653211100000 00000111 124678899 Q sequence1 164 AKTKDGVREVFEMATRAA 181 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~ 181 (184) ++++.|+.++|+++.+.+ T Consensus 166 ~~~~~~i~e~~~~l~~~~ 183 (184) T 4ILE_A 166 CKEKDNIDITLQWLIQHS 183 (184) T ss_dssp TTTTBSHHHHHHHHHTTC T ss_pred CCCCccHHHHHHHHHHcc Confidence 999999999999987654
##### No 123 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2YC2_D INTRAFLAGELLAR TRANSPORT PROTEIN 25, SMALL; TRANSPORT PROTEIN, CILIUM, IFT COMPLEX; 2.588A {CHLAMYDOMONAS REINHARDTII} Probab=99.73 E-value=7.4e-22 Score=135.46 Aligned_cols=168 Identities=23% Similarity=0.302 Sum_probs=83.7 Template_Neff=11.700 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKD--QFPEVYVPTVFENY-VADIEVDG--KQVELALWDTAGLEDYDRLRPLSYP 78 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~--~~~~~~~~t~~~~~-~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~ 78 (184) .....++|+++|++++|||+|++++... .+.....++....+ .......+ ..+.+.+||++|.+.+...+..++. T Consensus 16 ~~~~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 95 (208) T 2YC2_D 16 TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN 95 (208) T ss_dssp SEEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC T ss_pred CcccceEEEEECCCCCCHHHHHHHHhcCCCcccccCCCceeeEEEEEEEECCCCCeEEEEEEEeCCCchHHHHHHHHHhc Confidence 3456789999999999999999999875 33333333222111 11122222 2457889999998888777888888 Q sequence1 79 DTDVILMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIG 155 (184) Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184) .+|++++|+|+.+..++.....++....... ....|+++|+||.|+...... ........++...+ T Consensus 96 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~piv~v~~k~d~~~~~~~-----------~~~~~~~~~~~~~~ 164 (208) T 2YC2_D 96 GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ-----------VRLDMAQDWATTNT 164 (208) T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------C-----------CCHHHHHHHHHHHT T ss_pred CCCEEEEEEeCCCHHHHHhHHHHHHHHHHhCccCCCCceEEEEEeCCCCCchhhh-----------cCHHHHHHHHHhCC Confidence 9999999999998776665543333222221 125889999999998753211 01122222333333 Q sequence1 156 AFGYMECSAKT-KDGVREVFEMATRAALQ 183 (184) Q Consensus 156 ~~~~~~~s~~~-~~~i~~~~~~~~~~~~~ 183 (184) +.++.+|+.+ +.++.+++.++.+.+++ T Consensus 165 -~~~~~~s~~~~~~~i~~~~~~l~~~~~~ 192 (208) T 2YC2_D 165 -LDFFDVSANPPGKDADAPFLSIATTFYR 192 (208) T ss_dssp -CEEEECCC------CCHHHHHHHHHHHH T ss_pred -CcEEEecCCCCCCCchHHHHHHHHHHHH Confidence 5689999999 99999999998887653
##### No 124 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6VBV_3 Bardet-Biedl syndrome 18 protein, BBS1; Cilia, ciliopathy, complex, membrane-protein transport; HET: GTP; 3.5A {Bos taurus} Probab=99.73 E-value=7.7e-22 Score=133.46 Aligned_cols=166 Identities=15% Similarity=0.222 Sum_probs=107.0 Template_Neff=11.300 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ..+.++|+++|.+++|||||++++........ ..++..... . ........+.+||++|++.+...+..++..++++ T Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~t~~~~~-~--~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~v 90 (186) T 6VBV_3 14 KKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQDIVPTIGFSI-Q--KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAI 90 (186) T ss_dssp ---CEECEEECCTTSSHHHHHHTTSCTTTCCSCCCCCCSCCC-E--EEECSSCEEEECCCCCCGGGCGGGGGGGTTCSCE T ss_pred CCCeEEEEEEcCCCCCHHHHHHHhccCCCCCCCCCCcceEEE-E--EEEcCCeEEEEEECCCChhhHHHHHHHhhhCCEE Confidence 45678999999999999999999976543222 222211111 1 1223346789999999988877888888899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184) ++|+|+.+..++......+....... ....|+++++||+|+...... ....... ....... ..+.++ T Consensus 91 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vivv~nK~D~~~~~~~-~~~~~~~--------~~~~~~~-~~~~~~ 160 (186) T 6VBV_3 91 IFVIDSSDKLRMVVAKEELRTLLNHPDIKHRRIPILFFANKMDLRDALTS-VKVSQLL--------CLEDIKD-KPWHIC 160 (186) T ss_dssp EEEEETTCSSTHHHHHHHHHHHHTSTTTTTSCCCEEEEEECCSSTTCCCH-HHHHHHH--------TTTSCCS-SCEEEE T ss_pred EEEEECCChhhHHHHHHHHHHHHcCcchhcCCCcEEEEEeCCCccccCCH-HHHHHHc--------CchhhCC-CCeEEE Confidence 99999998765554433333333221 125799999999999763211 1110000 0000011 125678 Q sequence1 161 ECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) .+|++++.|+.++|+++.+.+.+ T Consensus 161 ~~sa~~~~~i~~~~~~l~~~i~~ 183 (186) T 6VBV_3 161 ASDAIKGEGLQEGVDWLQDQIQS 183 (186) T ss_dssp EECSSSCCSHHHHHHHHHHHHHC T ss_pred EccCCCCCCHHHHHHHHHHHHHh Confidence 89999999999999999887643
##### No 125 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3DOE_A ADP-ribosylation factor-like protein 2, ADP-ribosylation; ADP-ribosylation factor-like 2, binder of; HET: GTP; 2.25A {Homo sapiens} Probab=99.73 E-value=8.2e-22 Score=134.41 Aligned_cols=165 Identities=15% Similarity=0.217 Sum_probs=107.3 Template_Neff=10.500 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ......+|+++|+.++|||||++++........ .++.... ........+.+.+||++|+..+...+..++..++++ T Consensus 12 ~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~-~~t~~~~---~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~i 87 (192) T 3DOE_A 12 QKERELRLLMLGLDNAGKTTILKKFNGEDIDTI-SPTLGFN---IKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGL 87 (192) T ss_dssp CCTTEEEEEEECSTTSSHHHHHHHHHTCCCSSC-CCCSSEE---EEECCBTTBEEEEEEECCCGGGGGGGGGGCTTCSEE T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHcCCCCCCC-CcccceE---EEEEEECCEEEEEEECCCChhhHHHHHHHhhcCCEE Confidence 345678999999999999999998865433211 1111111 111223346788999999988877788888899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) ++++|+++..++......+...... .....|+++++||.|+...... ...... . ....... ..+.++.+ T Consensus 88 i~vvd~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~-------~-~~~~~~~-~~~~~~~~ 157 (192) T 3DOE_A 88 IWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSS-NAIREV-------L-ELDSIRS-HHWCIQGC 157 (192) T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-HHHHHG-------G-GGGGCCS-SCEEEEEC T ss_pred EEEEECCCHHHHHHHHHHHHHHHhchhhcCCEEEEEEeCCCCCCCCCH-HHHHHH-------c-cchhhhc-CceEEEEc Confidence 9999999877766654434433322 1235799999999999753211 000000 0 0000011 12567889 Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184) |++++.|+.++|.++...+. T Consensus 158 Sa~~~~~i~~~~~~l~~~~~ 177 (192) T 3DOE_A 158 SAVTGENLLPGIDWLLDDIS 177 (192) T ss_dssp BTTTTBTHHHHHHHHHHHHH T ss_pred cCCCCCCHHHHHHHHHHHHh Confidence 99999999999999887653
##### No 126 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2WKP_A NPH1-1, RAS-RELATED C3 BOTULINUM TOXIN; TRANSFERASE, CELL ADHESION, GTPASE, SMALL; HET: GTP, FMN; 1.9A {AVENA SATIVA, HOMO SAPIENS} Probab=99.73 E-value=8.9e-22 Score=143.96 Aligned_cols=179 Identities=57% Similarity=0.984 Sum_probs=119.9 Template_Neff=11.800 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ....++++++|.+++|||||++++..........++............+....+.+||+||...+...+..++..+++++ T Consensus 152 ~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 231 (332) T 2WKP_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332) T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE T ss_pred HHHhHeeeeecCCcCcchHHHHHHhcCCCCCCCCCCCceeEEEEEEECCEEEEEEEEeCCCchhHHhcchhhhCCCCEEE Confidence 35567899999999999999999987755433333322222222233345678899999999877777777888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) +|+|++...++......+...+.......|+++++||.|+.........................++...+...++.+|+ T Consensus 232 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 311 (332) T 2WKP_A 232 ICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332) T ss_dssp EEEETTCHHHHHHCCCCCHHHHHHHCTTCCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCT T ss_pred EEEeCCChHHHHHHHHHHHHHHHHHCCCCCEEEEEecccCCCcccchHHHHHHHhcccCHHHHHHHHHHhCCCcEEEeec Confidence 99999987666555444554444333568999999999998643221111111111111222222333333467889999 Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184) +++.|+.++++++.+.+++ T Consensus 312 ~~~~gi~~~~~~i~~~~~~ 330 (332) T 2WKP_A 312 LTQRGLKTVFDEAIRAVLC 330 (332) T ss_dssp TTCTTHHHHHHHHHHHHHS T ss_pred CCCCCHHHHHHHHHHHHhC Confidence 9999999999999887764
##### No 127 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1Z6Y_A ADP-ribosylation factor-like protein 5; GDP-Binding, Membrane Trafficking, Structural Genomics; HET: GDP; 2.4A {Homo sapiens} SCOP: c.37.1.8 Probab=99.72 E-value=9.5e-22 Score=132.30 Aligned_cols=165 Identities=19% Similarity=0.286 Sum_probs=105.9 Template_Neff=11.200 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ...+..+|+++|+.++|||||++++......... ++.... ...... ....+.+||++|++.+...+..++..++++ T Consensus 12 ~~~~~~~i~i~G~~~~GKSsl~~~l~~~~~~~~~-~~~~~~-~~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~i 87 (179) T 1Z6Y_A 12 FNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSN-VEEIVI--NNTRFLMWDIGGQESLRSSWNTYYTNTEFV 87 (179) T ss_dssp HTTSCEEEEEEEETTSSHHHHHHHTTTTSCEEEE-ECSSSS-CEEEEE--TTEEEEEEEESGGGTTCC----CCTTCCEE T ss_pred cCCCceEEEEEcCCCCChHHHHHHHhcCCccccc-Cccccc-eEEEEE--CCEEEEEEECCCChhhHHHHHHhcccCCEE Confidence 3466789999999999999999999876553321 111111 111222 245788999999988888888888999999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) ++|+|.++..++......+...... .....|+++++||+|+...... ........ ..........++.+ T Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~---------~~~~~~~~~~~~~~ 157 (179) T 1Z6Y_A 88 IVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV-AEISQFLK---------LTSIKDHQWHIQAC 157 (179) T ss_dssp EEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH-HHHHHHTT---------GGGCCSSCEEEEEC T ss_pred EEEEeCCChHHHHHHHHHHHHHHcChhhhcCcEEEEEeCCCCCcCCCH-HHHHHHhC---------CccccCCCeEEEEc Confidence 9999999866555554444444332 1236899999999999763211 11111000 00001122568889 Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184) |++++.|+.++|+++.+.+. T Consensus 158 S~~~~~gi~~~~~~l~~~~~ 177 (179) T 1Z6Y_A 158 CALTGEGLCQGLEWMMSRLK 177 (179) T ss_dssp BTTTTBTHHHHHHHHHTC-- T ss_pred cCCCCccHHHHHHHHHhhhc Confidence 99999999999999988764
##### No 128 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6O62_A Ras-related protein SEC4; G-PROTEIN, RAB, GDP, P-LOOP, GTPASE; HET: GDP; 1.88A {Candida albicans (strain SC5314 / ATCC MYA-2876)} Probab=99.72 E-value=9.8e-22 Score=132.01 Aligned_cols=165 Identities=28% Similarity=0.527 Sum_probs=107.6 Template_Neff=12.100 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ....++|+++|..++|||||++++..........++..... .......+....+.+||++|...+...+..++..++++ T Consensus 11 ~~~~~~i~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 90 (184) T 6O62_A 11 YDMIMKLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGI 90 (184) T ss_dssp CSEEEEEEEECCTTSSHHHHHHHHHTCCCC-------CCEEEEEEEEETTEEEEEEEEECSSSCCTTCCCHHHHSSCSEE T ss_pred ccceEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChHHHhhhHHHhccCCEE Confidence 35678999999999999999999986654322222111111 11122223356788999999887777777888889999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|+|+++..++......+...........|+++++||.|+....... ......++...+ ..++++| T Consensus 91 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s 157 (184) T 6O62_A 91 VLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCDDEVNRQVS------------KEQGQELAAKLN-VPFLEAS 157 (184) T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCCTTCCSC------------HHHHHHHHHHHT-CCEEECB T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEeCCCCcccccCC------------HHHHHHHHHHhC-CCEEEcc Confidence 999999987666555433333332222357899999999987642110 011111222222 5688999 Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184) +.++.++.+++.++...+. T Consensus 158 ~~~~~~v~~~~~~l~~~~~ 176 (184) T 6O62_A 158 AKSNENVDSIFYELASIIQ 176 (184) T ss_dssp TTTTBTHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHH Confidence 9999999999988877654
##### No 129 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3IHW_A CENTG3; ras, centaurin, gtpase, Structural Genomics; 1.92A {Homo sapiens} Probab=99.72 E-value=9.9e-22 Score=132.79 Aligned_cols=163 Identities=19% Similarity=0.292 Sum_probs=108.0 Template_Neff=11.200 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) .....+|+++|.+++|||||++++....+.....++. ..+......+...+.+.+||++|++.+. ++..+++++ T Consensus 17 ~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~d~~g~~~~~-----~~~~~~~~i 90 (184) T 3IHW_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184) T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE T ss_pred CCCcEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCCC-CceEEEEEECCEEEEEEEEcCCCChHHh-----heecCCEEE Confidence 4567899999999999999999998765543333322 1222233334456778889999987664 567889999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) +|+|+++..++......+....... ....|+++|+||.|+...... .. .......++.......++++| T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~ilv~~k~d~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~~~S 160 (184) T 3IHW_A 91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPR--VI--------DDSRARKLSTDLKRCTYYETC 160 (184) T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCC--CS--------CHHHHHHHHHHTTTCEEEEEB T ss_pred EEccCCCHHHHHHHHHHHHHHHhhcCCCCCCEEEEeehhhhccCCCc--cc--------CHHHHHHHHHHhcCCeEEEec Confidence 9999998776666543333332221 136889999999998652111 00 011111222222236788999 Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184) ++++.++.++|.++.+.+.+ T Consensus 161 ~~~~~~i~~~~~~l~~~~~~ 180 (184) T 3IHW_A 161 ATYGLNVERVFQDVAQKVVA 180 (184) T ss_dssp TTTTBTHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHH Confidence 99999999999998887653
##### No 130 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5KUT_B Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GDP; 1.693A {Homo sapiens} Probab=99.72 E-value=1e-21 Score=133.55 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=107.9 Template_Neff=10.700 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) ......+|+++|.+++|||+|++++....+.....++....+ ...+...+....+.+||++|.. ..+..++..+|+ T Consensus 5 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~d~ 81 (189) T 5KUT_B 5 TQRSVLLCKVVGACGVGKSAFLQAFLGRGLGHQDTREQPPGYAIDTVQVNGQEKYLILCEVGTDG---LLATSLDATCDV 81 (189) T ss_dssp CSCCEEEEEEEECTTSSHHHHHHHHTTCCTTCC-CCSSCTTEEEEEEEETTEEEEEEEEEEECSG---GGGTSCCCCSSE T ss_pred cccceEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCCCceEEEEEEECCEEEEEEEEeeCCCc---chhHhHhcCCCE Confidence 345678999999999999999999987765443222222221 2233344555778899998864 345566788999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYME 161 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 161 (184) +++|+|++++.++.....++..... ....|+++++||+|+...... .......++...+. ..+++ T Consensus 82 vi~v~d~~~~~s~~~l~~~~~~~~~--~~~~p~iiv~nk~D~~~~~~~------------~~~~~~~~~~~~~~~~~~~~ 147 (189) T 5KUT_B 82 ACLMFDGSDPKSFAHCASVYKHHYM--DGQTPCLFVSSKADLPEGVAV------------SGPSPAEFCRKHRLPAPVPF 147 (189) T ss_dssp EEEEEETTCTTHHHHHHHHHHHHTT--TSSSCEEEEEECTTSCCCCCS------------SCCCHHHHHHHTTCCCCEEC T ss_pred EEEEeeCCCHHHHHHHHHHHHHhhc--CCCCCEEEEEeCCCCCCCCCC------------CCccHHHHHHHcCCCCCeeE Confidence 9999999988777765443333222 247899999999998752211 01111122222222 34788 Q sequence1 162 CSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~ 182 (184) +|+++++|+.++|.++...++ T Consensus 148 ~s~~~~~~i~~~~~~l~~~~~ 168 (189) T 5KUT_B 148 SCAGPAEPSTTIFTQLATMAA 168 (189) T ss_dssp CCCSSSCCCCHHHHHHHHHHH T ss_pred ecCCCCCCHHHHHHHHHHHHh Confidence 999999999999999887764
##### No 131 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6HUF_H Ras-related protein Rab-27A; GTPase, Exocytosis, Vesicle transport; HET: GNP, MG; 2.82A {Homo sapiens} Probab=99.72 E-value=1.1e-21 Score=131.94 Aligned_cols=166 Identities=28% Similarity=0.449 Sum_probs=108.4 Template_Neff=11.800 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ....++++++|.+++|||++++++....+.....++..... .......+....+.+||++|++.+...+..++..++++ T Consensus 6 ~~~~~~i~i~G~~~~GKst~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~ 85 (182) T 6HUF_H 6 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKTIYRNDKRIKLQLWDTAGLERFRSLTTAFFRDAMGF 85 (182) T ss_dssp --CEEEEEEECSTTSCHHHHHHHHHHSSCCCCCCCCCSCCEEEEEECSSSSCEEEEEECCCTTCSCTTCSSSHHHHCSEE T ss_pred cceEEEEEEECCCCCCHHHHHHHHhCCCCCccccceeeEEEEEEEEEECCEEEEEEEEeCCCCHHHHHhhHHHhcCCCEE Confidence 35688999999999999999999987655433222221111 11222233456788999999988877888888899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) ++|+|+.+..++......+....... ....|+++++||.|........ .......+...+ ..++.+ T Consensus 86 v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vivv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~ 152 (182) T 6HUF_H 86 LLLFDLTNEESFLNVRNWISQLKTHAYSENPDIVLCGNKSDLEDERVVA------------AAEARQLAEHYG-IPYFET 152 (182) T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSSSSSCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHHT-CCEEEC T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCCCcccccCC------------HHHHHHHHHHhC-CCEEEe Confidence 99999987655555433222222211 2357899999999987532110 011111122222 568899 Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184) |+.++.++.++|.++.+.+.+ T Consensus 153 s~~~~~~v~~~~~~l~~~~~~ 173 (182) T 6HUF_H 153 SAANGTNISQAIEMLLDLIMK 173 (182) T ss_dssp CTTTCTTHHHHHHHHHHHHHH T ss_pred eCCCCCCHHHHHHHHHHHHHH Confidence 999999999999888776543
##### No 132 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6HUF_P Ras-related protein Rab-27A; GTPase, Exocytosis, Vesicle transport; HET: GNP, MG; 2.82A {Homo sapiens} Probab=99.72 E-value=1.1e-21 Score=131.94 Aligned_cols=166 Identities=28% Similarity=0.449 Sum_probs=108.4 Template_Neff=11.800 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ....++++++|.+++|||++++++....+.....++..... .......+....+.+||++|++.+...+..++..++++ T Consensus 6 ~~~~~~i~i~G~~~~GKst~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~ 85 (182) T 6HUF_P 6 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKTIYRNDKRIKLQLWDTAGLERFRSLTTAFFRDAMGF 85 (182) T ss_dssp --CEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCCCCSCCEEEEEECSSSSCEEEEEECCCTTCSCTTCSSSHHHHCSEE T ss_pred cceEEEEEEECCCCCCHHHHHHHHhCCCCCccccceeeEEEEEEEEEECCEEEEEEEEeCCCCHHHHHhhHHHhcCCCEE Confidence 35688999999999999999999987655433222221111 11222233456788999999988877888888899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) ++|+|+.+..++......+....... ....|+++++||.|........ .......+...+ ..++.+ T Consensus 86 v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vivv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~ 152 (182) T 6HUF_P 86 LLLFDLTNEESFLNVRNWISQLKTHAYSENPDIVLCGNKSDLEDERVVA------------AAEARQLAEHYG-IPYFET 152 (182) T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSSSSSCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHHT-CCEEEC T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCCCcccccCC------------HHHHHHHHHHhC-CCEEEe Confidence 99999987655555433222222211 2357899999999987532110 011111122222 568899 Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184) |+.++.++.++|.++.+.+.+ T Consensus 153 s~~~~~~v~~~~~~l~~~~~~ 173 (182) T 6HUF_P 153 SAANGTNISQAIEMLLDLIMK 173 (182) T ss_dssp CTTTCTTHHHHHHHHHHHHHH T ss_pred eCCCCCCHHHHHHHHHHHHHH Confidence 999999999999888776543
##### No 133 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2MMG_A GTP-binding nuclear protein Ran; G-protein, nucleotide binding, GTP binding; NMR {Homo sapiens} Probab=99.72 E-value=1.1e-21 Score=135.94 Aligned_cols=165 Identities=26% Similarity=0.482 Sum_probs=112.8 Template_Neff=11.000 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) +......+|+++|..++|||+|++++..........++..... .......+....+.+||++|+..+...+..++..++ T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 84 (216) T 2MMG_A 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 84 (216) T ss_dssp TCSSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSSSCSSGGGHHHHTTCC T ss_pred CCCcccEEEEEECCCCCCHHHHHHHHhcCCCCcCcccCceeEEEEEEEEeCCceEEEEEEeCCCchhhcccchhhccCCc Confidence 3456678999999999999999999887655433222221111 112223334568899999998877777888888999 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184) ++++|++.++..++..... |...+.......|+++|+||.|+....... ....++... ...+++ T Consensus 85 ~vi~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~--------------~~~~~~~~~-~~~~~~ 148 (216) T 2MMG_A 85 CAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDRKVKA--------------KSIVFHRKK-NLQYYD 148 (216) T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHHCSCCEEEEEECTTSSSCSSCT--------------TTCCHHHHH-TCEEEE T ss_pred EEEEEEeCCChHHhhcHHH-HHHHHHHHcCCCCEEEEEecccccccccch--------------hHHHHHHHc-CCcEEE Confidence 9999999998766665533 333332222478999999999987532110 001112222 267899 Q sequence1 162 CSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~~ 183 (184) +|++++.++.++|.++.+.+.+ T Consensus 149 ~S~~~~~~i~~~~~~l~~~~~~ 170 (216) T 2MMG_A 149 ISAKSNYNFEKPFLWLARKLIG 170 (216) T ss_dssp CBTTTTBTTTHHHHHHHHHHHT T ss_pred eeccCCCChHHHHHHHHHHHhC Confidence 9999999999999998887654
##### No 134 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5KUT_A Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GDP; 1.693A {Homo sapiens} Probab=99.72 E-value=1.1e-21 Score=133.33 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=108.4 Template_Neff=10.800 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) ......+|+++|.+++|||+|++++....+.....++....+ ...+...+....+.+||++|.. ..+..++..+|+ T Consensus 5 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~d~ 81 (189) T 5KUT_A 5 TQRSVLLCKVVGACGVGKSAFLQAFLGRGLGHQDTREQPPGYAIDTVQVNGQEKYLILCEVGTDG---LLATSLDATCDV 81 (189) T ss_dssp CSCSEEEEEEEECTTSSHHHHHHHHTTCCSSCCCSTTSCTTEEEEEEEETTEEEEEEEEEEECSG---GGGTSCCCCSSE T ss_pred cccccEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCCCceEEEEEEECCEEEEEEEEeeCCCc---chhHhHhcCCCE Confidence 345678999999999999999999987765443222222221 2233344555778899998864 345566788999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYME 161 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 161 (184) +++|+|+++..++.....++..... ....|+++++||.|+...... .......++...+. ..+++ T Consensus 82 vi~v~d~~~~~s~~~l~~~~~~~~~--~~~~~~iiv~~k~D~~~~~~~------------~~~~~~~~~~~~~~~~~~~~ 147 (189) T 5KUT_A 82 ACLMFDGSDPKSFAHCASVYKHHYM--DGQTPCLFVSSKADLPEGVAV------------SGPSPAEFCRKHRLPAPVPF 147 (189) T ss_dssp EEEEEETTCTTHHHHHHHHHHHHTT--TSSSCEEEEEECTTSCCCCCS------------SSCCHHHHHHHTTCCCCEEC T ss_pred EEEEeeCCCHHHHHHHHHHHHHhhc--CCCCCEEEEEeCCCCCCCCCC------------CCccHHHHHHHcCCCCCeEE Confidence 9999999987777665433333222 247899999999998753211 01111122222222 35788 Q sequence1 162 CSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~ 182 (184) +|+++++|+.++|.++...++ T Consensus 148 ~s~~~~~~i~~~~~~l~~~~~ 168 (189) T 5KUT_A 148 SCAGPAEPSTTIFTQLATMAA 168 (189) T ss_dssp CCCSSSCCCCHHHHHHHHHHH T ss_pred eeCCCCCCHHHHHHHHHHHHh Confidence 999999999999999888764
##### No 135 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2X77_B ADP-RIBOSYLATION FACTOR; GTP-BINDING PROTEIN, SMALL GTPASE, NUCLEOTIDE-BINDING; HET: GDP; 2.1A {LEISHMANIA MAJOR} Probab=99.72 E-value=1.2e-21 Score=133.26 Aligned_cols=165 Identities=19% Similarity=0.268 Sum_probs=100.9 Template_Neff=10.700 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ...+.++|+++|++++|||||++++........ .++....+ . ........+.+||++|...+...+..++..+|++ T Consensus 18 ~~~~~~~i~~~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~-~--~~~~~~~~~~~~d~~G~~~~~~~~~~~~~~~d~i 93 (189) T 2X77_B 18 PADRKIRVLMLGLDNAGKTSILYRLHLGDVVTT-VPTVGVNL-E--TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAV 93 (189) T ss_dssp CSSSCEEEEEEEETTSSHHHHHHHTCSSCCEEC-------CC-E--EEEETTEEEEECEECC---------CTTTTCCEE T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHhcCCCccc-CCccceEE-E--EEEECCEEEEEEECCCCcchHHHHHHhcCCCCEE Confidence 346778999999999999999999986654321 11111111 1 1222346788999999988887888888899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) ++|+|.+++.++......+...+... ....|+++++||+|+....... .... .. ..... ....+.++.+ T Consensus 94 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vilv~nK~D~~~~~~~~-~~~~----~~----~~~~~-~~~~~~~~~~ 163 (189) T 2X77_B 94 IYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEA-EIAE----QL----GVSSI-MNRTWTIVKS 163 (189) T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSSSCCCHH-HHHH----HT----TCTTC-CSSCEEEEEC T ss_pred EEEEECCChHHHHHHHHHHHHHHccHHhcCCEEEEEEECCCCCCCCCHH-HHHH----Hh----CChhh-cCCCEEEEEC Confidence 99999998776665544444433322 2357899999999997632111 1100 00 00000 0112468889 Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184) |+.++.|+.+++.++.+.+. T Consensus 164 s~~~~~~v~~~~~~l~~~~~ 183 (189) T 2X77_B 164 SSKTGDGLVEGMDWLVERLR 183 (189) T ss_dssp CTTTCTTHHHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHH Confidence 99999999999999887664
##### No 136 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2Y8E_A RAB-PROTEIN 6; HYDROLASE, NUCLEOTIDE BINDING, GTP BINDING; HET: SO4, GNP; 1.39A {DROSOPHILA MELANOGASTER} Probab=99.72 E-value=1.2e-21 Score=131.37 Aligned_cols=165 Identities=28% Similarity=0.426 Sum_probs=109.1 Template_Neff=11.800 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ....++|+++|+.|+|||+|++++..........++.... .............+.+||++|.+.+...+..++..++++ T Consensus 11 ~~~~~~i~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 90 (179) T 2Y8E_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179) T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE T ss_pred CcccEEEEEECCCCCChHHHHHHHhcCCCCcCccceeEEEEEEEEEEECCEEEEEEEEeCCCChHHHhhhHHHccCCCEE Confidence 3567899999999999999999998765433222211111 111122233456789999999887777777778899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|+|.++..++......+...........|+++++||.|+....... .......+...+ ..++++| T Consensus 91 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s 157 (179) T 2Y8E_A 91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS------------TEEGERKAKELN-VMFIETS 157 (179) T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSC------------HHHHHHHHHHHT-CEEEEEB T ss_pred EEEEeCCChHHHHHHHHHHHHHHHHcCCCCEEEEEEecccCCCccCCC------------HHHHHHHHHHhC-CcEEEEe Confidence 999999887666555443333322222468999999999997642110 011111122222 5688999 Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184) +.++.++.++|+++...+. T Consensus 158 ~~~~~~~~~~~~~l~~~~~ 176 (179) T 2Y8E_A 158 AKAGYNVKQLFRRVAAALP 176 (179) T ss_dssp TTTTBSHHHHHHHHHHTCC T ss_pred cCCCCCHHHHHHHHHHHcc Confidence 9999999999998887653
##### No 137 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4CZ2_C RAS-RELATED PROTEIN RAB-32, ANKYRIN REPEAT; SIGNALING PROTEIN, VARP, RAB-EFFECTOR, RAB; HET: MSE, GCP; 2.97A {HOMO SAPIENS} Probab=99.72 E-value=1.2e-21 Score=136.46 Aligned_cols=167 Identities=22% Similarity=0.364 Sum_probs=109.9 Template_Neff=11.600 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDG-KQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) .....++|+++|.+++|||+|++++....+.....++..... .......+ ....+.+||++|++.+...+..++..+| T Consensus 26 ~~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 105 (230) T 4CZ2_C 26 TREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGLERFGNMTRVYYKEAM 105 (230) T ss_dssp -CEEEEEEEEEESTTSSHHHHHHHHHHCCCCSSCCCCCSEEEEEEEECCSSSCEEEEEEEEECGGGGGTTCHHHHHTTCC T ss_pred ccccceEEEEECCCCCCHHHHHHHHHccCCCcccCcceeeEEEEEEeecCCCCeEEEEEEeCCCcccchhhhHHHhhcCc Confidence 345678999999999999999999987755433222221111 11111211 2267899999999888777888888999 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184) ++++|+|+.+..++......+..+.... ....|+++|+||.|+...... ...+...+....... T Consensus 106 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ii~v~~k~D~~~~~~~------------~~~~~~~~~~~~~~~ 173 (230) T 4CZ2_C 106 GAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLANKCDQNKDSSM------------SPSQMDQFCKEHGFA 173 (230) T ss_dssp EEEEEEETTCTHHHHTHHHHHHHHHTTCCCTTSSCCCEEEEEECTTCCC----------------CHHHHHHHHHHHTCS T ss_pred EEEEEEeCCCchhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCCCCCCCC------------CHHHHHHHHHHcCCC Confidence 9999999998766665543333222111 236889999999998753211 011112222233335 Q sequence1 158 GYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) .++++|+.++.++.+++.++.+.+. T Consensus 174 ~~~~~s~~~~~~i~~l~~~l~~~~~ 198 (230) T 4CZ2_C 174 GWFETSAKDNINIEEAARFLVEKML 198 (230) T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHH T ss_pred cEEEeeCCCCCCHHHHHHHHHHHHH Confidence 7889999999999999999888764
##### No 138 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2BME_A RAS-RELATED PROTEIN RAB4A (E.C.3.6.5.2); GTP-BINDING PROTEIN, VESICULAR TRANSPORT, ENDOCYTOSIS; HET: GNP, TRS; 1.57A {HOMO SAPIENS} SCOP: c.37.1.8 Probab=99.72 E-value=1.2e-21 Score=132.33 Aligned_cols=167 Identities=29% Similarity=0.409 Sum_probs=110.1 Template_Neff=11.500 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) ......+|+++|.+++||||+++++..........++....+ ............+.+||++|.+.+...+..++..+++ T Consensus 6 ~~~~~~ki~i~G~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 85 (186) T 2BME_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186) T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE T ss_pred ccceeEEEEEeCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCChhhHhhhHHHhcCCCE Confidence 345778999999999999999999987654332222211111 1112223345678899999988887778888889999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++|+|+++..++......+...........|+++++||.|+....... .......+... ...++++ T Consensus 86 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~k~d~~~~~~~~------------~~~~~~~~~~~-~~~~~~~ 152 (186) T 2BME_A 86 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVT------------FLEASRFAQEN-ELMFLET 152 (186) T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC------------HHHHHHHHHHT-TCEEEEC T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEeCCcCcCCCcCC------------HHHHHHHHHHC-CCeEEEe Confidence 9999999987666555433322222222468999999999986532110 00111111111 2467889 Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184) |+.++.++.++++++++.+.+ T Consensus 153 s~~~~~~i~~~~~~~~~~~~~ 173 (186) T 2BME_A 153 SALTGENVEEAFVQCARKILN 173 (186) T ss_dssp CTTTCTTHHHHHHHHHHHHHH T ss_pred eCCCCCCHHHHHHHHHHHHHH Confidence 999999999999988876643
##### No 139 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5C1S_A Small GTPase EhRabX3; P-loop containing nucleotide triphosphate hydrolases; HET: MSE, GDP; 3.1A {Entamoeba histolytica} Probab=99.72 E-value=1.2e-21 Score=146.96 Aligned_cols=161 Identities=19% Similarity=0.319 Sum_probs=103.9 Template_Neff=10.800 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) ....+++++|.+++|||+|++++........... ...............+.+||+||++.+......++..+|++++ T Consensus 220 ~~~~~i~~~g~~~~gks~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~l~ 296 (391) T 5C1S_A 220 DIKIRMLMVGDQNVGKTTFIRKFALQDPTGHDFM---NAITTRFEMEKIKYEIIMIDWGFYNKLLQTNPAISRTIEAILI 296 (391) T ss_dssp SCEEEEEECCCHHHHHHC---CCCCSCSSCSTTC---CEEEECCC-CCCCCEEEEECHHHHHHTTTTCSSGGGSCCEEEE T ss_pred ccceeEEEeCCCCCCceeeeeeeccCCCCCccce---eeeeeEeeeccEEEEEEEEechHHHHHHhhhhHHhCCCCEEEE Confidence 4567899999999999999999886643211110 0001111222334578899999998887777778889999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184) |+|+++..++......|...+....+..|+++|+||+|+...... .......++...+ ..++++||+ T Consensus 297 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~nK~D~~~~~~v------------~~~~~~~~~~~~~-~~~~~~Sa~ 363 (391) T 5C1S_A 297 VYDITNEESFQNIHRKYYPLINNKFSDVAGVIVGYKTDLEAQRKI------------TMGDALTLADWLG-YKYVEMSSK 363 (391) T ss_dssp CCCSSCCCSSTTHHHHHTTCSSCCEECC----CCCCHHHHHTTCS------------SCCBCSSCCCCST-TTHHHHHHH T ss_pred EEECCCHHHHHHHHHHHHHHHHccCCCCeEEEEEcCchhhhcCCC------------CHHHHHHHHHHHC-CEEEEecCC Confidence 999999888877655555555444456899999999999763211 1112222333333 578999999 Q sequence1 166 TKDGVREVFEMATRAAL 182 (184) Q Consensus 166 ~~~~i~~~~~~~~~~~~ 182 (184) ++.|++++|.++.+.+. T Consensus 364 ~~~~v~~l~~~i~~~~~ 380 (391) T 5C1S_A 364 DTEDHSSIIKALAHSIR 380 (391) T ss_dssp HHHHHHHHHTTCCC--- T ss_pred CCCCHHHHHHHHHHHHH Confidence 99999999999887764
##### No 140 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4HAT_A GTP-binding nuclear protein Ran, Ran-specific; HEAT repeat, nuclear export, Ran-RanBP1; HET: GOL, LMB, GNP, EDO; 1.78A {Homo sapiens} Probab=99.72 E-value=1.2e-21 Score=135.49 Aligned_cols=164 Identities=26% Similarity=0.454 Sum_probs=110.4 Template_Neff=11.200 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) +......+|+++|..++|||+|++++....+.....++....+ ............+.+||++|...+...+..++..+| T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 84 (216) T 4HAT_A 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 84 (216) T ss_dssp ---CCEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTGGGGGTTCC T ss_pred CCCCccEEEEEECCCCCChHHHHHHHhcCCCccccccccccEEEEEEEEeCCcEEEEEEEeCCCCccccccchhhccCCc Confidence 3456778999999999999999999887655333222221111 112222334568899999998877777777888999 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184) ++++|++.++..++...... ...+.......|+++++||.|+........ ...++... ...+++ T Consensus 85 ~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~iilv~nk~D~~~~~~~~~--------------~~~~~~~~-~~~~~~ 148 (216) T 4HAT_A 85 CAIIMFDVTSRVTYKNVPNW-HRDLVRVCENIPIVLCGNKVDIKDRKVKAK--------------SIVFHRKK-NLQYYD 148 (216) T ss_dssp EEEEEEETTCHHHHHTHHHH-HHHHHHHCTTCCEEEEEECTTSSSCCSCGG--------------GCCHHHHH-TCEEEE T ss_pred EEEEEEeCCChHHHhcHHHH-HHHHHHHcCCCCEEEEEeCccccCcccchh--------------HHHHHHHc-CCeEEE Confidence 99999999987766655433 333322224789999999999875321100 01111122 257889 Q sequence1 162 CSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~ 182 (184) +|++++.|+.++|.++.+.+. T Consensus 149 ~Sa~~~~~i~~~~~~l~~~~~ 169 (216) T 4HAT_A 149 ISAKSNYNFEKPFLWLARKLI 169 (216) T ss_dssp CCTTTCTTTTHHHHHHHHHHH T ss_pred cccCCCCChHHHHHHHHHHHh Confidence 999999999999999887765
##### No 141 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2O52_A Crystal structure of human RAB4B; G-PROTEIN, RAB, GDP, STRUCTURAL GENOMICS; HET: GDP; 2.2A {Homo sapiens} Probab=99.72 E-value=1.3e-21 Score=133.25 Aligned_cols=168 Identities=28% Similarity=0.426 Sum_probs=107.5 Template_Neff=12.000 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) +......+|+++|..++|||+|++++..........++..... ......+.....+.+||++|.+.+...+..++..+| T Consensus 20 ~~~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 99 (200) T 2O52_A 20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 99 (200) T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS T ss_pred CCcCceEEEEEECCCCCCHHHHHHHHhccccccCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHhhhHHHhcCCC Confidence 3456778999999999999999999987654432222221111 111222334567899999998877777777888999 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184) ++++|+|.++..++......+........+..|+++++||.|+....... .......+...+ ..++. T Consensus 100 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~ 166 (200) T 2O52_A 100 GALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVT------------FLEASRFAQENE-LMFLE 166 (200) T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSC------------HHHHHHHHHHTT-CEEEE T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEeCCCCCCcccCC------------HHHHHHHHHHCC-CeEEE Confidence 99999999987666655443333333223568999999999986532110 011111122222 56889 Q sequence1 162 CSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~~ 183 (184) +|+.++.++.+++.++.+.+.+ T Consensus 167 ~s~~~~~~i~~~~~~l~~~~~~ 188 (200) T 2O52_A 167 TSALTGENVEEAFLKCARTILN 188 (200) T ss_dssp ECTTTCTTHHHHHHHHHHHHHH T ss_pred eeCCCCCCHHHHHHHHHHHHHH Confidence 9999999999999988877643
##### No 142 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4CZ2_B RAS-RELATED PROTEIN RAB-32, ANKYRIN REPEAT; SIGNALING PROTEIN, VARP, RAB-EFFECTOR, RAB; HET: GCP; 2.97A {HOMO SAPIENS} Probab=99.72 E-value=1.3e-21 Score=136.34 Aligned_cols=167 Identities=22% Similarity=0.364 Sum_probs=111.4 Template_Neff=11.600 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDG-KQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) .....++|+++|.+++|||+|++++....+.....++..... .......+ ..+.+.+||++|++.+...+..++..+| T Consensus 26 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 105 (230) T 4CZ2_B 26 TREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGLERFGNMTRVYYKEAM 105 (230) T ss_dssp CEEEEEEEEEEESTTSSHHHHHHHHHHCCCCSSCCCCCSEEEEEEEECCSSSEEEEEEEEEECGGGGGTTCHHHHHTTCC T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEecCCceEEEEEEeCCCChhhHHHHHHHHhhCC Confidence 345678999999999999999999987755433222221111 11111221 2267899999999888778888888999 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184) ++++|+|+.+..++......+....... ....|+++|+||.|+...... .......++...... T Consensus 106 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~~k~D~~~~~~~------------~~~~~~~~~~~~~~~ 173 (230) T 4CZ2_B 106 GAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLANKCDQNKDSSM------------SPSQMDQFCKEHGFA 173 (230) T ss_dssp EEEEEEETTCTHHHHTHHHHHHHHHTTCCCTTSSCCCEEEEEECTTSCCCSCC------------CHHHHHHHHHHHTCS T ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCcccccC------------CHHHHHHHHHHhCCC Confidence 9999999998766665544333222111 236889999999998753211 011111222233335 Q sequence1 158 GYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) .++++|+.++.++.++|.++.+.+. T Consensus 174 ~~~~~s~~~~~~i~~~~~~l~~~~~ 198 (230) T 4CZ2_B 174 GWFETSAKDNINIEEAARFLVEKML 198 (230) T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHH T ss_pred cEEEeeCCCCcCHHHHHHHHHHHHH Confidence 7889999999999999999888764
##### No 143 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2WKQ_A NPH1-1, RAS-RELATED C3 BOTULINUM TOXIN; TRANSFERASE, CELL ADHESION, NUCLEOTIDE-BINDING, PROTEIN; HET: FMN, GTP; 1.6A {AVENA SATIVA, HOMO SAPIENS} Probab=99.72 E-value=1.4e-21 Score=143.05 Aligned_cols=178 Identities=57% Similarity=0.988 Sum_probs=117.8 Template_Neff=11.700 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) ....+++++|..++|||||++++..........++............+....+.+||+||...+...+..++..++++++ T Consensus 153 ~~~~~i~~~g~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 232 (332) T 2WKQ_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332) T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE T ss_pred hcceEEEEECCCCCChHHHHHHHhcCCCCCCcCCCcccceEEEEEECCEEEEEEEEeCCCCcchhhhchhhcCCCcEEEE Confidence 45678999999999999999999876554333332222222222333445678899999998887777778888999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184) |+++++..++......+...+.......|+++|+||.|+.........................++.......++++|++ T Consensus 233 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 312 (332) T 2WKQ_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 312 (332) T ss_dssp EEETTCHHHHHHCCCCCHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT T ss_pred EEeCCChHHHHHHHHhHHHHHHHHCCCCCEEEEEeCccccCChHHHHHHHHcCCCCCCHHHHHHHHHHhCCCEEEEeeCC Confidence 99999876665554444444444335689999999999986432111111111111111222223333333678899999 Q sequence1 166 TKDGVREVFEMATRAALQ 183 (184) Q Consensus 166 ~~~~i~~~~~~~~~~~~~ 183 (184) ++.|+.+++.++.+.+++ T Consensus 313 ~~~~i~~~~~~l~~~~~~ 330 (332) T 2WKQ_A 313 TQRGLKTVFDEAIRAVLC 330 (332) T ss_dssp TCTTHHHHHHHHHHHHHC T ss_pred CCcCHHHHHHHHHHHHhC Confidence 999999999999988764
##### No 144 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1O3Y_A ADP-ribosylation factor 1; PROTEIN TRANSPORT; HET: GTP; 1.5A {Mus musculus} SCOP: c.37.1.8 Probab=99.72 E-value=1.4e-21 Score=129.56 Aligned_cols=161 Identities=18% Similarity=0.250 Sum_probs=107.9 Template_Neff=11.700 Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 87 (184) Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (184) +.+|+++|++++|||||++++....+.... ++... ...........+.+||++|...+...+..++..++++++|+ T Consensus 2 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-~~~~~---~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 77 (166) T 1O3Y_A 2 SMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGF---NVETVEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVV 77 (166) T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSE---EEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCCEEEEEE T ss_pred CeEEEEEcCCCCCHHHHHHHhccCCceeec-cccee---EEEEEEECCEEEEEEEeCCChhhHHHHHHHhccCCEEEEEE Confidence 578999999999999999999876543221 11111 11112234568899999999888777888888999999999 Q sequence1 88 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 166 (184) Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 166 (184) |+++..++......+....... ....|+++++||+|+............ ....... ...+.++.+|+++ T Consensus 78 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~k~D~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~s~~~ 147 (166) T 1O3Y_A 78 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDK---------LGLHSLR-HRNWYIQATCATS 147 (166) T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHH---------HTGGGCC-SCCEEEEECBTTT T ss_pred eCCCHHHHHHHHHHHHHHHhcccccCCEEEEEEeCcCCCCCCCHHHHHHH---------hCChhhc-CCCeEEEEEecCC Confidence 9998665555444444433322 135789999999999764321110000 0000111 1225788999999 Q sequence1 167 KDGVREVFEMATRAAL 182 (184) Q Consensus 167 ~~~i~~~~~~~~~~~~ 182 (184) +.|+.++++++.+.+. T Consensus 148 ~~gi~~~~~~l~~~~~ 163 (166) T 1O3Y_A 148 GDGLYEGLDWLSNQLR 163 (166) T ss_dssp TBTHHHHHHHHHHHHC T ss_pred CCcHHHHHHHHHHHHh Confidence 9999999999988764
##### No 145 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3DZ8_A Crystal structure of human Rab3B; ras, gdp, gtpase, structural genomics; HET: GDP; 1.9A {Homo sapiens} Probab=99.72 E-value=1.4e-21 Score=132.21 Aligned_cols=167 Identities=30% Similarity=0.472 Sum_probs=110.8 Template_Neff=11.900 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) .....++|+++|.+++|||+|++++..........++..... ............+.+||++|.+.+...+..++..+|+ T Consensus 19 ~~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 98 (191) T 3DZ8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG 98 (191) T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE T ss_pred CcceeEEEEEECCCCCChhHHHHHHcCCCCChhhcccceeEEEEEEEEECCEEEEEEEEeCCCchhhHhhhHHHhcCCCE Confidence 345678999999999999999999987654332222211111 1122223345678999999988777777778889999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++|+|.++..++......+...........|+++++||.|+........ .....++...+ +.++.+ T Consensus 99 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~~k~D~~~~~~~~~------------~~~~~~~~~~~-~~~~~~ 165 (191) T 3DZ8_A 99 FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPT------------EKGQLLAEQLG-FDFFEA 165 (191) T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH------------HHHHHHHHHHT-CEEEEC T ss_pred EEEEEeCCChHHHHHHHHHHHHHHHcCcCCCeEEEEEEcccCCCCeecCH------------HHHHHHHHHhC-CcEEEE Confidence 99999998866555543333222222224679999999999875321100 11111122222 578899 Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184) |++++.++.++|.++...+.+ T Consensus 166 s~~~~~~i~~~~~~l~~~~~~ 186 (191) T 3DZ8_A 166 SAKENISVRQAFERLVDAICD 186 (191) T ss_dssp BTTTTBSHHHHHHHHHHHHHH T ss_pred EcCCCCCHHHHHHHHHHHHHH Confidence 999999999999998877653
##### No 146 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3RAB_A RAB3A; G PROTEIN, VESICULAR TRAFFICKING, GTP; HET: GNP; 2.0A {Rattus norvegicus} SCOP: c.37.1.8 Probab=99.72 E-value=1.4e-21 Score=129.07 Aligned_cols=164 Identities=29% Similarity=0.497 Sum_probs=107.7 Template_Neff=12.500 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ....+++++|.+|+|||++++++..........+...... ............+.+||++|++.+...+..++..+++++ T Consensus 3 ~~~~~i~~~G~~~~GKs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 82 (169) T 3RAB_A 3 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 82 (169) T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEE T ss_pred ceeEEEEEECCCCCChHHHHHHHcCCCCCcccCCcceEEEEEEEEEECCEEEEEEEEeCCCchHHHHHHHHHhCCCcEEE Confidence 5678999999999999999999886654332222211111 111122233467899999998877777777888899999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) +|+|.++..++......+...........|+++++||.|+....... ......+..... ..++.+|+ T Consensus 83 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~k~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s~ 149 (169) T 3RAB_A 83 LMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVS------------SERGRQLADHLG-FEFFEASA 149 (169) T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHHT-CEEEECBT T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCEEEEEEEcccCCCcccCC------------HHHHHHHHHHHC-CcEEEccC Confidence 99999986666554332222222222467899999999987632210 011111111222 46888999 Q sequence1 165 KTKDGVREVFEMATRAAL 182 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~~ 182 (184) .++.++.+++.++...+. T Consensus 150 ~~~~~i~~~~~~l~~~~~ 167 (169) T 3RAB_A 150 KDNINVKQTFERLVDVIC 167 (169) T ss_dssp TTTBSHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHH Confidence 999999999998887654
##### No 147 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3CPJ_B Rab GDP-dissociation inhibitor, GTP-binding protein; Rab GTPase, prenylation, vesicular transport; HET: GDP; 2.35A {Saccharomyces cerevisiae} Probab=99.72 E-value=1.5e-21 Score=135.56 Aligned_cols=167 Identities=27% Similarity=0.388 Sum_probs=106.7 Template_Neff=11.500 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) .....++|+++|.+++|||+|++++..........+.....+ ...+...+....+.+||++|.+.+...+..++..+|+ T Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~d~ 88 (223) T 3CPJ_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223) T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHhCCCCCCccCCceeeeeEEEEEEECCEEEEEEEEeCCCCHHHHHHHHHHhccCCE Confidence 346778999999999999999999987654332222211111 1122233345678999999988887778888889999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++|+++.+..++......+..+........|+++|+||.|+....... ......+..... ..++++ T Consensus 89 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ilv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~ 155 (223) T 3CPJ_B 89 ALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVP------------TEESKTFAQENQ-LLFTET 155 (223) T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSC------------HHHHHHHHHHTT-CEEEEC T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEeCCCCCCcccCC------------HHHHHHHHHHcC-CCEEEc Confidence 9999999886666554333333222222368999999999987632110 011111112222 568899 Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184) |++++.++.++|.++...+.. T Consensus 156 s~~~~~~i~~~~~~l~~~~~~ 176 (223) T 3CPJ_B 156 SALNSENVDKAFEELINTIYQ 176 (223) T ss_dssp CCC-CCCHHHHHHHHHHHHTT T ss_pred cCCCCCCHHHHHHHHHHHHHH Confidence 999999999999998877643
##### No 148 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6S5H_A Ras-related protein Rab-38; GTPase, Ras-related protein Rab-38, Structural; HET: GTP, EDO; 2.0A {Homo sapiens} Probab=99.72 E-value=1.5e-21 Score=133.81 Aligned_cols=170 Identities=22% Similarity=0.329 Sum_probs=109.5 Template_Neff=11.900 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVD-GKQVELALWDTAGLEDYDRLRPLSYPDT 80 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 80 (184) +...+..+|+++|..++|||+|++++..........++..... ....... +....+.+||++|.+.+...+..++..+ T Consensus 5 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~ 84 (208) T 6S5H_A 5 PHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREA 84 (208) T ss_dssp CSEEEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCCSEEEEEEEEEEETTEEEEEEEEEECTTGGGSSCHHHHHTTE T ss_pred CCccceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEEEeecCCCCeEEEEEEeCCCCcchhhhHHHHhccC Confidence 4567789999999999999999999987654433222221111 1111111 2346789999999888777787788899 Q sequence1 81 DVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184) Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184) |++++|+|+++..++.....++....... ....|+++++||.|+....... .......++..... T Consensus 85 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~~k~D~~~~~~~~-----------~~~~~~~~~~~~~~ 153 (208) T 6S5H_A 85 MGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLANKCDQGKDVLMN-----------NGLKMDQFCKEHGF 153 (208) T ss_dssp EEEEEEEETTCHHHHHHHHHHHHHHHHHCCCTTSCCCEEEEEEECTTC------------------CHHHHHHHHHHHTC T ss_pred cEEEEEecCCChHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCCCCcccccc-----------chHHHHHHHHHhCC Confidence 99999999998766655433232222211 1367899999999987532110 00111122223333 Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) ..++.+|+.++.++.++|.++.+.+.. T Consensus 154 ~~~~~~S~~~~~~i~~l~~~l~~~~~~ 180 (208) T 6S5H_A 154 VGWFETSAKENINIDEASRCLVKHILA 180 (208) T ss_dssp SEEEEEBTTTTBSHHHHHHHHHHHHHH T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHHHh Confidence 578899999999999999998876643
##### No 149 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6BOF_B GTPase KRas; HYDROLASE, small gtpase, signal transduction; HET: GDP; 1.401A {Homo sapiens} Probab=99.72 E-value=1.5e-21 Score=129.21 Aligned_cols=162 Identities=31% Similarity=0.517 Sum_probs=108.9 Template_Neff=12.200 Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 87 (184) Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (184) .++|+++|.+++|||||++++..........++...........++....+.+||++|...+...+..+...++++++++ T Consensus 2 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 81 (168) T 6BOF_B 2 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 81 (168) T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHEEEEECTTSTTSEEEEEEETTEEEEEEEECCSGGGGGCSCHHHHHHHCSEEEEEE T ss_pred cEEEEEECCCCCCHHHHHHHHHCCCCCcccCCcccccEEEEEEECCEEEEEEEEeCCCchHhHhhHHHHhhhCCEEEEEE Confidence 57899999999999999999987665433333222222223333444567889999998877777777888899999999 Q sequence1 88 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 166 (184) Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 166 (184) ++++..++......+....... ....|+++++||.|+....... .....++...+ ..++.+|+.+ T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~k~d~~~~~~~~-------------~~~~~~~~~~~-~~~~~~s~~~ 147 (168) T 6BOF_B 82 AINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDT-------------KQAQDLARSYG-IPFIETSTKT 147 (168) T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCH-------------HHHHHHHHHHT-CCEEECCTTT T ss_pred ECCChHhHHHHHHHHHHHHHccCCCCCcEEEEEeCCCCCCCcCCH-------------HHHHHHHHHhC-CCEEEeeCCC Confidence 9988665555433332222211 1357899999999987532111 11111222222 5688999999 Q sequence1 167 KDGVREVFEMATRAALQ 183 (184) Q Consensus 167 ~~~i~~~~~~~~~~~~~ 183 (184) +.++.+++.++.+.+.. T Consensus 148 ~~~i~~~~~~l~~~~~~ 164 (168) T 6BOF_B 148 RQGVDDAFYTLVREIRK 164 (168) T ss_dssp CTTHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHH Confidence 99999999998877643
##### No 150 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5WDQ_A GTPase HRas (E.C.3.6.5.2); small G-protein, GTPase, ONCOPROTEIN, HYDROLASE; HET: GNP, ACT; 1.25A {Homo sapiens} Probab=99.72 E-value=1.5e-21 Score=129.34 Aligned_cols=165 Identities=32% Similarity=0.502 Sum_probs=108.8 Template_Neff=12.300 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ..+..+|+++|+.++||||+++++..........++............+....+.+||++|...+...+..+...+++++ T Consensus 4 ~~~~~~i~~~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 83 (170) T 5WDQ_A 4 HMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 83 (170) T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSSCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcccceEEEEEECCEEEEEEEEECCCchHhHhhHHHHhhcCCEEE Confidence 45678999999999999999999987654332222222222222223334567889999998888777888888899999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) +|+++.+..++......+....... ....|+++++||.|........ .....++.... ..++.+| T Consensus 84 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~~k~d~~~~~~~~-------------~~~~~~~~~~~-~~~~~~s 149 (170) T 5WDQ_A 84 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDAAARTVES-------------RQAQDLARSYG-IPYIETS 149 (170) T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCH-------------HHHHHHHHHHT-CCEEECC T ss_pred EEEeCCChhhHHHHHHHHHHHHHhccCCCCcEEEEEecccccCCcCCH-------------HHHHHHHHHhC-CCEEEEe Confidence 9999988665554433222222211 2358899999999987532111 01111112222 5688899 Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184) +.++.++.++++++...+.+ T Consensus 150 ~~~~~~i~~~~~~i~~~~~~ 169 (170) T 5WDQ_A 150 AKTRQGVEDAFYTLVREIRQ 169 (170) T ss_dssp TTTCTTHHHHHHHHHHHHTT T ss_pred cCCCcCHHHHHHHHHHHHHc Confidence 99999999999998877653
##### No 151 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5XC5_A Probable Rab-related GTPase; Rab GTPase, Acanthamoeba polyphaga mimivirus; HET: ACT, GTP; 1.398A {Acanthamoeba polyphaga mimivirus} Probab=99.72 E-value=1.5e-21 Score=130.60 Aligned_cols=165 Identities=19% Similarity=0.301 Sum_probs=109.2 Template_Neff=11.700 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIE-VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~-~~~-~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) .+..+|+++|.+++|||+|++++..........++....+.. ... .......+.+||++|+..+...+..++..++++ T Consensus 3 ~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 82 (176) T 5XC5_A 3 NNGYKIILIGSSGVGKSSIVHQFLFNRKISNVSPTIGAAFASKQVIAKNGKTLKLNIWDTAGLERFRSITKMYYTNSLGC 82 (176) T ss_dssp --CEEEEEEESTTSSHHHHHHHHHCSSCCCCCCCCCSCEEEEEEEECTTSCEEEEEEEECCCSGGGHHHHGGGCTTCSEE T ss_pred CCCeEEEEECCCCCChHHHHHHHHhCCCCcCCCCceEEEEEEEEEEeeCCcEEEEEEEeCCCchhhHhhhhhhcCCCeEE Confidence 567899999999999999999998766543222221111111 111 122346788999999887777777778889999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|+|+++..++......+...........|+++++||.|+...... . .......++...+ ..++.+| T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~d~~~~~~~-~----------~~~~~~~~~~~~~-~~~~~~s 150 (176) T 5XC5_A 83 LVVFDVTDRESFDDVYYWINDLRINCHTTYYILVVANKIDIDKNNWR-V----------SENEIKKFCRDND-CDYVFAS 150 (176) T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHCSCCCEEEEEEECTTSCGGGCS-S----------CHHHHHHHHHHTT-CEEEECC T ss_pred EEEEeCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEehhhcCCCCCc-C----------CHHHHHHHHHHCC-CCEEEEe Confidence 99999998777766544333333322346789999999998653211 0 0111222222222 5788999 Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184) +.++.|+.++|+.+.+.+. T Consensus 151 ~~~~~~i~~~~~~l~~~i~ 169 (176) T 5XC5_A 151 SFESDTVNNLFGKMIDKMS 169 (176) T ss_dssp TTCHHHHHHHHHHHHHHHH T ss_pred CCCCccHHHHHHHHHHHHh Confidence 9999999999999888764
##### No 152 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1OIX_A RAS-RELATED PROTEIN RAB-11A; SMALL G PROTEIN, INTRACELLULAR TRAFFICKING; HET: GDP; 1.7A {HOMO SAPIENS} SCOP: c.37.1.8 Probab=99.71 E-value=1.6e-21 Score=132.27 Aligned_cols=165 Identities=29% Similarity=0.440 Sum_probs=110.3 Template_Neff=11.500 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) ......+|+++|+.++|||+|++++..........++..... .......+....+.+||++|...+...+..+...+++ T Consensus 25 ~~~~~~~i~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 104 (191) T 1OIX_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG 104 (191) T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE T ss_pred hccceEEEEEECCCCCChHHHHHHHhcCCCCCCCCcceEEEEEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHhccCCE Confidence 446678999999999999999999887654332222111111 1112223345678899999988777777778888999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++|+|+.+..++....+.+...........|+++++||.|........ ......++.... ..++++ T Consensus 105 ii~v~d~~~~~~~~~~~~~l~~~~~~~~~~~pvvlv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~ 171 (191) T 1OIX_A 105 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP------------TDEARAFAEKNG-LSFIET 171 (191) T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC------------HHHHHHHHHHTT-CEEEEC T ss_pred EEEEEcCCChhHHHHHHHHHHHHHHhCCCCCEEEEEEeccchhhccCCC------------HHHHHHHHHHcC-CeEEEe Confidence 9999999986656555433333333323468999999999986532110 011111222222 568899 Q sequence1 163 SAKTKDGVREVFEMATRAA 181 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~ 181 (184) |++++.++.++|+++.+.+ T Consensus 172 S~~~~~~i~~~~~~l~~~i 190 (191) T 1OIX_A 172 SALDSTNVEAAFQTILTEI 190 (191) T ss_dssp CTTTCTTHHHHHHHHHHHH T ss_pred eCCCCCCHHHHHHHHHHHh Confidence 9999999999999988765
##### No 153 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2IL1_A predicted human GTPase in complex; G-PROTEIN, RAB, GDP, GTPASE, PREDICTED; HET: GDP; 2.1A {Homo sapiens} Probab=99.71 E-value=1.7e-21 Score=132.04 Aligned_cols=169 Identities=26% Similarity=0.467 Sum_probs=108.4 Template_Neff=11.800 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) +...+..+|+++|.+++|||+|++++..........+...... ...+........+.+||++|.+.+...+..++..+| T Consensus 21 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 100 (192) T 2IL1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192) T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS T ss_pred CCccccEEEEEECCCCCCHHHHHHHHccCccccccCCcccceEEEEEEEECCEEEEEEEEeCCCChhhHhhhHHHhccCC Confidence 3456778999999999999999999987654332222111111 112222334567899999998877777777888999 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184) ++++|++.++..++......+...........|+++++||.|+....... .......+.......++. T Consensus 101 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~k~D~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 168 (192) T 2IL1_A 101 GIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREIT------------RQQGEKFAQQITGMRFCE 168 (192) T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC------------HHHHHHHHHTSTTCEEEE T ss_pred EEEEEEeCCCcchhhhHHHHHHHHHHHccCCCeEEEEEeCCCccccceeC------------HHHHHHHHHHHcCCeEEE Confidence 99999999887665554332222222222467999999999987532110 011111222222367889 Q sequence1 162 CSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~~ 183 (184) +|+.++.++.++++++.+.+.+ T Consensus 169 ~s~~~~~~i~~~~~~l~~~~~~ 190 (192) T 2IL1_A 169 ASAKDNFNVDEIFLKLVDDILK 190 (192) T ss_dssp CBTTTTBSHHHHHHHHHHHHHH T ss_pred eecCCCCCHHHHHHHHHHHHHH Confidence 9999999999999999887754
##### No 154 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2BOV_A RAS-RELATED PROTEIN RAL-A, MONO-ADP-RIBOSYLTRANSFERASE C3; C3BOT, EXOENZYME, RALA, GTPASE, ADP; HET: GDP; 2.66A {HOMO SAPIENS} Probab=99.71 E-value=1.8e-21 Score=133.88 Aligned_cols=165 Identities=33% Similarity=0.488 Sum_probs=110.9 Template_Neff=11.100 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) .....+|+++|.+++|||||++++....+.....++....+............+.+||++|...+...+..++..+|+++ T Consensus 11 ~~~~~~i~ivG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 90 (206) T 2BOV_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206) T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE T ss_pred CCCcEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCccceEEEEEEECCEEEEEEEEeCCCCHHHHHhHHHHhcCCCEEE Confidence 45678999999999999999999987665433322222222222233334457889999998877777777888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) +++++++..++......+..+.... ....|+++++||.|+....... ............ ..++++| T Consensus 91 ~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~p~ilv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~S 157 (206) T 2BOV_A 91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS------------VEEAKNRAEQWN-VNYVETS 157 (206) T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSC------------HHHHHHHHHHHT-CEEEEEC T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccCCCcCCCC------------HHHHHHHHHHHC-CCEEEee Confidence 9999988666655543333333221 2368999999999997532110 011111111122 5688999 Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184) +.++.|+.++|.++++.+. T Consensus 158 ~~~~~~i~~~~~~l~~~~~ 176 (206) T 2BOV_A 158 AKTRANVDKVFFDLMREIR 176 (206) T ss_dssp TTTCTTHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHH Confidence 9999999999999887664
##### No 155 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6IY1_C Ras-related protein Rab-11A; Complex, transport, GTPase, TRANSPORT PROTEIN; HET: GDP; 2.11A {Homo sapiens} Probab=99.71 E-value=1.8e-21 Score=127.14 Aligned_cols=162 Identities=29% Similarity=0.444 Sum_probs=108.1 Template_Neff=13.200 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) ..++|+++|+.++|||++++++..........++..... .......+....+.+||++|...+...+..+...++++++ T Consensus 2 ~~~~i~i~G~~~~GKs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 81 (165) T 6IY1_C 2 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165) T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEECSCCCSHHHHHHHHTTEEEEEE T ss_pred ceEEEEEECCCCCChHHHHHHHhcCCCCCCCcceeeeEEEEEEEEECCEEEEEEEEeCCCchhhHHhchHHhcCCCEEEE Confidence 467899999999999999999886654322222111111 1122233345678899999988777777777788999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184) ++++++..++....+.+...........|+++++||.|+....... ......++...+ ..++++|+. T Consensus 82 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s~~ 148 (165) T 6IY1_C 82 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP------------TDEARAFAEKNG-LSFIETSAL 148 (165) T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC------------HHHHHHHHHHHT-CEEEECBTT T ss_pred EEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEecccchhhcCCC------------HHHHHHHHHHcC-CcEEEeeCC Confidence 9999987666555443333333323468999999999987632210 111112222222 568899999 Q sequence1 166 TKDGVREVFEMATRAA 181 (184) Q Consensus 166 ~~~~i~~~~~~~~~~~ 181 (184) ++.++.++|+++.+.+ T Consensus 149 ~~~~i~~~~~~l~~~~ 164 (165) T 6IY1_C 149 DSTNVEAAFQTILTEI 164 (165) T ss_dssp TTBTHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHh Confidence 9999999999988765
##### No 156 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2ATV_A RAS-like estrogen-regulated growth inhibitor; RERG, GDP/GTP binding, GTP hydrolysis; HET: GDP; 1.9A {Homo sapiens} SCOP: c.37.1.8 Probab=99.71 E-value=1.9e-21 Score=132.55 Aligned_cols=166 Identities=28% Similarity=0.416 Sum_probs=107.1 Template_Neff=11.400 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) +......+|+++|.+++|||+|++++..........++............+....+.+||++|++.+.. +..+...+++ T Consensus 23 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~d~ 101 (196) T 2ATV_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQ-REGHMRWGEG 101 (196) T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCHH-HHHHHHHCSE T ss_pred cccCCcEEEEEECCCCCCHHHHHHHHhcCCCccccCCCcceeEEEEEEECCEEEEEEEEeCCCCCCchh-hhhhhccCCE Confidence 345678999999999999999999998766543333222222222333344556789999999876544 5556778999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKH--FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184) +++|+|+.++.++..... +...+.. .....|+++++||.|+....... ......++...+ ..++ T Consensus 102 ~i~v~d~~~~~~~~~~~~-~~~~l~~~~~~~~~~ivlv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~ 167 (196) T 2ATV_A 102 FVLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHSRQVS------------TEEGEKLATELA-CAFY 167 (196) T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGGCCSC------------HHHHHHHHHHHT-SEEE T ss_pred EEEEEECCChHHHHHHHH-HHHHHHHhcCCCCCEEEEEEecCCCCCcccCC------------HHHHHHHHHHhC-CCEE Confidence 999999998766655422 2222211 12368899999999986532110 011111222222 5688 Q sequence1 161 ECSAKTKD-GVREVFEMATRAALQ 183 (184) Q Consensus 161 ~~s~~~~~-~i~~~~~~~~~~~~~ 183 (184) .+|+.++. |+.++|.++.+.+.+ T Consensus 168 ~~Sa~~~~~~i~~~~~~l~~~~~~ 191 (196) T 2ATV_A 168 ECSACTGEGNITEIFYELCREVRR 191 (196) T ss_dssp ECCTTTCTTCHHHHHHHHHHHHHH T ss_pred EEeecCCCCcHHHHHHHHHHHHHH Confidence 99999998 999999998887653
##### No 157 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3BC1_A Ras-related protein Rab-27A (E.C.3.6.5.2), Synaptotagmin-like; Rab27, GTPase, Rab, signaling protein; HET: GNP; 1.8A {Mus musculus} Probab=99.71 E-value=2e-21 Score=132.29 Aligned_cols=165 Identities=28% Similarity=0.459 Sum_probs=107.5 Template_Neff=11.400 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIE----------VDGKQVELALWDTAGLEDYDRLR 73 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~-~~~----------~~~~~~~~~i~D~~g~~~~~~~~ 73 (184) .....+|+++|.+++|||+|++++..........++....+.. ... .......+.+||++|++.+...+ T Consensus 8 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~ 87 (195) T 3BC1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195) T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH T ss_pred cceeEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeeeEEEEEeEEEEecCCCCCCCCCCcEEEEEEEECCCcHHHHHhc Confidence 3468999999999999999999998665433322222111111 000 01234578899999998887778 Q sequence1 74 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN 152 (184) Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184) ..++..++++++|+++.+..++......+..+.... ....|+++++||.|........ ......... T Consensus 88 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~vivv~~k~D~~~~~~~~------------~~~~~~~~~ 155 (195) T 3BC1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVK------------EEEARELAE 155 (195) T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSC------------HHHHHHHHH T ss_pred HHHHccCCEEEEEeeCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecccchhhcCCC------------HHHHHHHHH Confidence 778889999999999998666665533333322221 1357899999999987532110 011111112 Q sequence1 153 RIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 153 ~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ..+ ..++++|+.++.++.++|.++.+.+. T Consensus 156 ~~~-~~~~~~s~~~~~~~~~~~~~l~~~~~ 184 (195) T 3BC1_A 156 KYG-IPYFETSAANGTNISHAIEMLLDLIM 184 (195) T ss_dssp HHT-CCEEECCTTTCTTHHHHHHHHHHHHH T ss_pred HhC-CCEEEeeCCCCCCHHHHHHHHHHHHH Confidence 222 56889999999999999988877653
##### No 158 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2H17_A Structure of human ADP-ribosylation factor-like; GDP, GTPASE, MEMBRANE TRAFFICKING, STRUCTURAL; HET: GDP; 1.7A {Homo sapiens} Probab=99.71 E-value=2e-21 Score=131.39 Aligned_cols=162 Identities=19% Similarity=0.305 Sum_probs=104.5 Template_Neff=10.300 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) .+...+|+++|+.++|||||++++....+.... ++.... ... .......+.+||++|++.+...+..++..+++++ T Consensus 18 ~~~~~ki~iiG~~~~GKstl~~~l~~~~~~~~~-~~~~~~-~~~--~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~vi 93 (181) T 2H17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSN-VEE--IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVI 93 (181) T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEE-CCSSSS-CEE--EEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEE T ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCcce-EEE--EEECCEEEEEEECCCChhhhhHHHHHccCCCEEE Confidence 466789999999999999999999876553321 111111 111 1122456889999999888888888889999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) +++|.++..++......+...... .....|+++++||+|+...... ........ . ... ......++.+| T Consensus 94 ~v~d~s~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-~~~~~~~~----~---~~~--~~~~~~~~~~s 163 (181) T 2H17_A 94 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV-AEISQFLK----L---TSI--KDHQWHIQACC 163 (181) T ss_dssp EEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-HHHHHHTT----G---GGC--CSSCEEEEECB T ss_pred EEEECCChHhHHHHHHHHHHHHhChhhcCCeEEEEEeCCCCCcCCCH-HHHHHHhC----C---ccc--cCCCeEEEECC Confidence 999998765554444444433322 1236899999999999753211 11100000 0 000 01124577899 Q sequence1 164 AKTKDGVREVFEMATRA 180 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~ 180 (184) ++++.|+.++|+++.+. T Consensus 164 ~~~~~~i~~~~~~l~~~ 180 (181) T 2H17_A 164 ALTGEGLCQGLEWMMSR 180 (181) T ss_dssp TTTTBTHHHHHHHHHTC T ss_pred CCCCccHHHHHHHHHhc Confidence 99999999999998764
##### No 159 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6S5F_A Ras-related protein Rab-39B; GTPase, Ras-related protein Rab-39B, GMPPNP; HET: GNP; 1.7A {Homo sapiens} Probab=99.71 E-value=2.1e-21 Score=132.77 Aligned_cols=168 Identities=28% Similarity=0.459 Sum_probs=111.8 Template_Neff=12.200 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVD-GKQVELALWDTAGLEDYDRLRPLSYPDT 80 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 80 (184) +.....++|+++|..++|||+|++++..........++....+ ....... .....+.+||++|.+.+...+..++..+ T Consensus 4 ~~~~~~~~i~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 83 (208) T 6S5F_A 4 AIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNS 83 (208) T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTC T ss_pred cccceeeEEEEECCCCCChHHHHHHHhcCCCCCCCCCcceEEEEEEEEEecCCCeEEEEEEeCCCcHHHHHHHHHHhccC Confidence 3456779999999999999999999987654333222211111 1111111 2356789999999988777788888899 Q sequence1 81 DVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 159 (184) Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184) |++++|+|+.+..++......+....... ....|+++++||.|+....... ......++...+ +.+ T Consensus 84 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~ 150 (208) T 6S5F_A 84 VGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVT------------RHEAEKLAAAYG-MKY 150 (208) T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHTTCCSSSCCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHTT-CCE T ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcCcccceEEEEeeCCCCCCCCcCC------------HHHHHHHHHHcC-CeE Confidence 99999999998776666543333332221 1367899999999987632110 011111222222 578 Q sequence1 160 MECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 160 ~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) +.+|+.++.++.++|.++.+.+.. T Consensus 151 ~~~s~~~~~~i~~~~~~l~~~~~~ 174 (208) T 6S5F_A 151 IETSARDAINVEKAFTDLTRDIYE 174 (208) T ss_dssp EEEBTTTTBSHHHHHHHHHHHHHH T ss_pred EEeeccCCCCHHHHHHHHHHHHHH Confidence 899999999999999988877643
##### No 160 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6H17_A Mutual gliding-motility protein MglA; GTPase, motility, CYTOSOLIC PROTEIN; HET: SO4, GSP; 1.275A {Myxococcus xanthus DK 1622} Probab=99.71 E-value=2.1e-21 Score=132.57 Aligned_cols=163 Identities=26% Similarity=0.304 Sum_probs=106.9 Template_Neff=11.700 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV----------YVPTVFENYV-ADI-EVDGKQVELALWDTAGLEDYDRL 72 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~----------~~~t~~~~~~-~~~-~~~~~~~~~~i~D~~g~~~~~~~ 72 (184) ....++|+++|.+++|||+|++++........ ..++...... ..+ ..++....+.+||++|.+.+... T Consensus 9 ~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 88 (201) T 6H17_A 9 REINCKIVYYGPGLCGKTTNLQYIYNKTAAETKGKLISLSTETDRTLFFDFLPLSLGEIRGFKTRFHLYTVPGQVFYDAS 88 (201) T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHHSCGGGBCCCEEEEETTEEEEEEEEEEECCCCCTTSEEEEEEEECCCSGGGHHH T ss_pred CCcceEEEEECCCCCCHHHHHHHHHccccccccceeeccCCccceeeeeceeeeeEeeecCceEEEEEEeCCCCCchHHH Confidence 45678999999999999999999886654321 1111111110 011 11223567889999998888878 Q sequence1 73 RPLSYPDTDVILMCFSID------SPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEE 146 (184) Q Consensus 73 ~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 146 (184) +..++..+|++++|+|.+ ...++..... |...+.......|+++++||.|+..... ... T Consensus 89 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ilv~nk~D~~~~~~--------------~~~ 153 (201) T 6H17_A 89 RKLILKGVDGVVFVADSQIERMEANMESLENLRI-NLAEQGYDLNKIPYVIQYNKRDLPNAVT--------------VEE 153 (201) T ss_dssp HHHHHTTCSEEEEEEECBGGGHHHHHHHHHHHHH-HHHTTTCCTTTSCEEEEEECTTSTTBCC--------------HHH T ss_pred HHHHHccCCEEEEEeeCCchhhHHHHHHHHHHHH-HHHHcccccCCCCEEEEEeCCCCCCCCC--------------HHH Confidence 888888999999999998 4444444322 2222222234689999999999865211 111 Q sequence1 147 GRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 147 ~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) ...++...+ +.++.+|++++.++.++|.++.+.+++ T Consensus 154 ~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~l~~~i~~ 189 (201) T 6H17_A 154 MRKALNHRN-IPEYQAVAPTGVGVFDTLKAVAKLVLT 189 (201) T ss_dssp HHHHHCTTC-CCEEECBGGGTBTHHHHHHHHHHHHHH T ss_pred HHHHhhcCC-CCEEEeeCCCCCCHHHHHHHHHHHHHH Confidence 112222223 578899999999999999998887754
##### No 161 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2G6B_A Ras-related protein Rab-26; G-PROTEIN, RAB, GTP ANALOGUE, Structural; HET: GNP; 2.0A {Homo sapiens} SCOP: c.37.1.8 Probab=99.71 E-value=2.1e-21 Score=130.52 Aligned_cols=165 Identities=30% Similarity=0.491 Sum_probs=101.9 Template_Neff=11.500 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) .....+++++|.+++|||++++++....+... ..++....+ .......+....+.+||++|.+.+...+..++..+++ T Consensus 7 ~~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 86 (180) T 2G6B_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180) T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE T ss_pred ccceEEEEEECCCCCCHHHHHHHHcCCCCCCCCceeceeeEEEEEEEEECCeEEEEEEEeCCCChhhHHcchHHhcCCCE Confidence 34578999999999999999999987654321 112111111 1122233344578999999988777777777788999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++|+|+++..++......+..+........|+++++||.|+....... .......+.... ..++++ T Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~iiv~~k~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~~ 153 (180) T 2G6B_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVK------------REDGEKLAKEYG-LPFMET 153 (180) T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSC------------HHHHHHHHHHHT-CCEEEC T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHcCCCCEEEEEEeCccCCCcccCC------------HHHHHHHHHHhC-CCEEEe Confidence 9999999886655555333333222222367899999999987532110 011111122222 468889 Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184) |+..+.|+.++|.++...+. T Consensus 154 s~~~~~~~~~~~~~~~~~~~ 173 (180) T 2G6B_A 154 SAKTGLNVDLAFTAIAKELK 173 (180) T ss_dssp CTTTCTTHHHHHHHHHHHHH T ss_pred eCCCCCCHHHHHHHHHHHHH Confidence 99999999999998887654
##### No 162 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5XCO_A B-cell lymphoma 6 protein, F1324; Hydrolase, Complex, Inhibitor, Small GTPase; HET: GDP; 1.25A {Homo sapiens} Probab=99.71 E-value=2.1e-21 Score=128.81 Aligned_cols=163 Identities=31% Similarity=0.486 Sum_probs=108.7 Template_Neff=12.200 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) ....+|+++|.+++|||||++++..........++............+....+.+||++|.+.+...+..+...++++++ T Consensus 3 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (171) T 5XCO_A 3 MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 82 (171) T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHCCCCCCSSCCCCEEEEEEEEETTEEEEEEEEECCCTTSCCHHHHHHHHHCCEEEE T ss_pred cceEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCcccceEEEEEECCEEEEEEEEECCCchhhHhhHHHHhhhCCEEEE Confidence 45689999999999999999999876544333332222222233333445678899999988887778888888999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) ++++.+..++......+....... ....|+++++||.|+........ ....++... ...++.+|+ T Consensus 83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~k~D~~~~~~~~~-------------~~~~~~~~~-~~~~~~~s~ 148 (171) T 5XCO_A 83 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTK-------------QAQDLARSY-GIPFIETSA 148 (171) T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHH-------------HHHHHHHHH-TCCEEECCT T ss_pred EEeCCChhHHHHHHHHHHHHHhhCCCCCCCEEEEEeCccCCCCcCCHH-------------HHHHHHHHh-CCCEEEEeC Confidence 999988655544432222222211 23589999999999875321111 011111112 256788999 Q sequence1 165 KTKDGVREVFEMATRAAL 182 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~~ 182 (184) .++.++.+++.++...+. T Consensus 149 ~~~~~i~~~~~~l~~~~~ 166 (171) T 5XCO_A 149 KTRQGVDDAFYTLVREIR 166 (171) T ss_dssp TTCTTHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHH Confidence 999999999999887664
##### No 163 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2FA9_B GTP-binding protein SAR1b; Sar1H79G mutant, PROTEIN TRANSPORT; HET: GDP, SO4; 2.5A {Cricetulus griseus} Probab=99.71 E-value=2.2e-21 Score=131.91 Aligned_cols=172 Identities=20% Similarity=0.233 Sum_probs=103.5 Template_Neff=10.800 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ..+..+|+++|++++|||||++++........ .++... ...... .....+.+||++|+......+..++..+++++ T Consensus 13 ~~~~~~i~i~G~~~~GKstll~~l~~~~~~~~-~~t~~~-~~~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ii 88 (189) T 2FA9_B 13 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHP-TSEELT--IAGMTFTTFDLGGGIQARRVWKNYLPAINGIV 88 (189) T ss_dssp TTCCEEEEEESSTTSSHHHHHHHHC---------CCCCC-SEEEEE--ETTEEEEECCCCCSSSHHHHHHHHGGGCSEEE T ss_pred cCCCcEEEEECCCCCCHHHHHHHHcCCCCCcc-cCCCCC-CeeeEE--ECCEEEEEEEcCCCHHHHHHHHHHchhCCEEE Confidence 45668999999999999999999987654221 111111 111111 12357899999998878778888888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVK--PEEGRDM-ANRIGAFGYM 160 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~ 160 (184) +|+|+++...+......+....... ....|+++++||+|+...... ............ ....... ........++ T Consensus 89 ~v~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (189) T 2FA9_B 89 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISE-ERLREMFGLYGQTTGKGSVSLKELNARPLEVF 167 (189) T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCTTSTTSCEEEEEECTTSTTCCCH-HHHHHHHTCTTTSCCSSCCCTTTCCSCCEEEE T ss_pred EEEECCChhhHHHHHHHHHHHhcchhhcCCCEEEEEeCCCCcccCCH-HHHHHHhhhccCCCCCCcccHHHhcCCcEEEE Confidence 9999987655544433333333221 236899999999999763221 111111000000 0000000 0011125678 Q sequence1 161 ECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~ 181 (184) .+||.+++|+.+++.++.+.+ T Consensus 168 ~~sa~~~~gi~~~~~~l~~~~ 188 (189) T 2FA9_B 168 MCSVLKRQGYGEGFRWMAQYI 188 (189) T ss_dssp ECBTTTTBSHHHHHHHHHTTC T ss_pred EeeCCcCCcHHHHHHHHHHhc Confidence 999999999999999987654
##### No 164 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6V5L_A GTPase KRas; KRas, allosteric inhibitor, drug discovery; HET: GDP, QPD, MG; NMR {Homo sapiens} Probab=99.71 E-value=2.3e-21 Score=127.98 Aligned_cols=163 Identities=32% Similarity=0.520 Sum_probs=108.3 Template_Neff=12.600 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC 86 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (184) +..+|+++|+.++||||+++++..........++............+....+.+||++|.+.+...+..++..++++++| T Consensus 2 ~~~~i~i~G~~~~GKst~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~v 81 (169) T 6V5L_A 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (169) T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHSSCCSSCCTTCCCEEEEEEEETTEEEEEEEEECCSCCSSHHHHHHHHHHCSEEEEE T ss_pred CcEEEEEECCCCCCHHHHHHHHHcCCCccccCCCccceEEEEEEECCEEEEEEEEeCCCchhhHHhHHHHHhhCCEEEEE Confidence 46899999999999999999988665543332222222222223334456788999999888877788888899999999 Q sequence1 87 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184) Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184) +++++..++......+....... ....|+++++||.|......... .....+.... ..++.+|+. T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~d~~~~~~~~~-------------~~~~~~~~~~-~~~~~~s~~ 147 (169) T 6V5L_A 82 FAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTK-------------QAQDLARSYG-IPFIETSAK 147 (169) T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTSSCCCSCHH-------------HHHHHHHHHT-CCEEECBTT T ss_pred EeCCChHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCccCCCCccCHH-------------HHHHHHHHhC-CCEEEeeCC Confidence 99988665555433333222221 23578999999999875321111 1111112222 567889999 Q sequence1 166 TKDGVREVFEMATRAALQ 183 (184) Q Consensus 166 ~~~~i~~~~~~~~~~~~~ 183 (184) ++.++.+++.++.+.+.+ T Consensus 148 ~~~~i~~~~~~l~~~~~~ 165 (169) T 6V5L_A 148 TRQGVDDAFYTLVREIRK 165 (169) T ss_dssp TTBTHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHH Confidence 999999999998877643
##### No 165 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5E95_A Mb(NS1), GTPase HRas; H-Ras, Monobody, Inhibitor, Complex, SIGNALING; HET: GDP; 1.402A {Homo sapiens} Probab=99.70 E-value=2.9e-21 Score=127.62 Aligned_cols=164 Identities=34% Similarity=0.525 Sum_probs=108.7 Template_Neff=12.400 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) ...++++++|++|+|||||++++..........++............+..+.+.+||++|.+.+...+..+...++++++ T Consensus 3 ~~~~~i~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (168) T 5E95_A 3 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 82 (168) T ss_dssp SCEEEEEEECSTTSSHHHHHHHHHHSSCCCCSSCCCCSCEEEEEEETTEEEEEEEEECTTSCTTCHHHHHHHHHCSEEEE T ss_pred CcceEEEEECCCCCChHHHHHHHHcCcccccCCCCcccceeEEEEECCEEEEEEEEECCCchhhHHhHHHHhccCCEEEE Confidence 46789999999999999999999866543322222222222222333445678899999988887777778888999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) |+++.+..++......+....... ....|+++++||.|......... .....+.... ..++.+|+ T Consensus 83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~d~~~~~~~~~-------------~~~~~~~~~~-~~~~~~s~ 148 (168) T 5E95_A 83 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-------------QAQDLARSYG-IPYIETSA 148 (168) T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSCCCEEEEEECTTCSSCSSCHH-------------HHHHHHHHHT-CCEEEECT T ss_pred EEeCCChHHHHHHHHHHHHHHHhcCCCCCcEEEEEeccccccccCCHH-------------HHHHHHHHhC-CCEEEEeC Confidence 999987665554433222222211 12578999999999875321111 0111111222 56788999 Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184) .++.++.+++.++.+.+.. T Consensus 149 ~~~~~i~~~~~~l~~~~~~ 167 (168) T 5E95_A 149 KTRQGVEDAFYTLVREIRQ 167 (168) T ss_dssp TTCTTHHHHHHHHHHHHHT T ss_pred CCCCCHHHHHHHHHHHHHc Confidence 9999999999999887653
##### No 166 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2GZH_A Ras-related protein Rab-11A (E.C.3.6.5.2), RAB11-FIP2; Ras-like G protein fold, a-helical; HET: GTP, MSE; 2.47A {Homo sapiens} SCOP: c.37.1.8 Probab=99.70 E-value=2.9e-21 Score=128.04 Aligned_cols=165 Identities=28% Similarity=0.413 Sum_probs=109.9 Template_Neff=12.500 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) .....++|+++|+.|+|||++++++..........++.... ........+....+.+||++|...+...+..+...+++ T Consensus 7 ~~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 86 (173) T 2GZH_A 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG 86 (173) T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECSSCSSCTTHHHHHTTCCE T ss_pred hcceeEEEEEECCCCCChHHHHHHHhcCccCCCCCcceEEEEEEEEEEECCEEEEEEEEeCCCcHHHHHHhHHHhcCCCE Confidence 34567899999999999999999988765433222221111 11122233345678899999988777677777788999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++++|..+..++......+...........|+++++||.|........ ......++... ..+++++ T Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~d~~~~~~~~------------~~~~~~~~~~~-~~~~~~~ 153 (173) T 2GZH_A 87 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP------------TDEARAFAEKN-GLSFIET 153 (173) T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHT-TCEEEEC T ss_pred EEEEEcCCChhHHHHHHHHHHHHHHhCCCCCeEEEEEecccchhhcCCC------------HHHHHHHHHHc-CCCEEEe Confidence 9999999886665555433333333222468999999999987532110 11111122222 2578899 Q sequence1 163 SAKTKDGVREVFEMATRAA 181 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~ 181 (184) |+.++.++.++|+++.+.+ T Consensus 154 s~~~~~~i~~~~~~l~~~~ 172 (173) T 2GZH_A 154 SALDSTNVEAAFQTILTEI 172 (173) T ss_dssp CTTTCTTHHHHHHHHHHTT T ss_pred eCCCCCCHHHHHHHHHHhh Confidence 9999999999999988765
##### No 167 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4V0L_A ARF-LIKE SMALL GTPASE; HYDROLASE; HET: GTP; 2.197A {CHLAMYDOMONAS REINHARDTII} Probab=99.70 E-value=2.9e-21 Score=128.31 Aligned_cols=165 Identities=18% Similarity=0.226 Sum_probs=106.8 Template_Neff=11.800 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) ......+|+++|.+++|||+|++++........ ..++.. ............+.+||++|...+...+..++..+|+ T Consensus 2 ~~~~~~~i~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~d~ 78 (169) T 4V0L_A 2 AASKKVNVLVVGLDNSGKTTIIERLKPRPRQAAEVAPTVG---FTVDEVEKGPLTFTVFDMSGAGRYRTLWEQYYREADA 78 (169) T ss_dssp CCSEEEEEEEECSTTSSHHHHHHTTSCGGGCCSCCCCCSS---EEEEEEEETTEEEEEEEECCSGGGGGGGGGGSTTCSE T ss_pred CCCCceEEEEEcCCCCChhHHHHHhcCCCcccCccccccc---cEEEEEEECCEEEEEEEcCCChhHHHHHHHHHhhCCE Confidence 446779999999999999999999986644221 111111 1111222335678999999988777778888889999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184) +++|+|..+...+......+....... ....|+++|+||.|+.............. .... ......++. T Consensus 79 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~k~D~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~ 148 (169) T 4V0L_A 79 VVFVVDSADKLRMVVARDEMEHMLKHSNMRKVPILYFANKKDLPVAMPPVEIAQALG---------LDDI-KDRPWQIVP 148 (169) T ss_dssp EEEEEETTCCTTHHHHHHHHHHHHHCTTCCSCCEEEEEECTTSTTCCCHHHHHHHHT---------GGGC-CSSCEEEEE T ss_pred EEEEEEccCcccHHHHHHHHHHHHhcccccCCCEEEEEECCCCCCCCCHHHHHHHhC---------CHHh-CCCCeEEEE Confidence 999999987655544433333332211 13689999999999875322111100000 0000 111246889 Q sequence1 162 CSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~ 181 (184) +|++++.|+.++++++.+.+ T Consensus 149 ~s~~~~~~v~~~~~~l~~~~ 168 (169) T 4V0L_A 149 SNGLTGEGVDKGIDWLAERL 168 (169) T ss_dssp CBTTTTBTHHHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHhc Confidence 99999999999999987654
##### No 168 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6IA7_B Intraflagellar transport protein 22; Intraflagellar transport protein 22, cilium; HET: GTP; 2.3A {Trypanosoma brucei brucei (strain 927/4 GUTat10.1)} Probab=99.70 E-value=2.9e-21 Score=134.19 Aligned_cols=168 Identities=16% Similarity=0.173 Sum_probs=95.2 Template_Neff=11.300 Q sequence1 2 AMGSPIRKKLVIVGDGACGKTCLLIVNSKDQ--FPEVYVPTVFENY-VADIEVD-----------GKQVELALWDTAGLE 67 (184) Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~--~~~~~~~t~~~~~-~~~~~~~-----------~~~~~~~i~D~~g~~ 67 (184) ++.....++|+++|..++|||||++++.... ......++..... ....... +....+.+||++|.+ T Consensus 3 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 82 (223) T 6IA7_B 3 ASMSDDLVKILVLGPSKSGKSTVTNFLAGTRDTPTKEYHETNPLRVLEVEIALDDTRRSGRQAAGLKKAVVQLWDVGGSS 82 (223) T ss_dssp -------CEEEEECSTTSSHHHHHHHHTCC----------CCSEEEEECCC----------------CCCCEEEEECCC- T ss_pred CccCccceEEEEECCCCCCHHHHHHHHcCCCCCCCcCccCCCCeEEEEEEEecCCcccCCccccCCCeEEEEEEECCCCh Confidence 3456778999999999999999999998632 2222222211111 1111111 235678899999988 Q sequence1 68 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF------------CPNVPIILVGNKKDLRNDEHTRRELA 135 (184) Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~------------~~~~~~~vv~nK~D~~~~~~~~~~~~ 135 (184) .+...+..++..++++++|+|+++..++......+....... ....|+++++||.|+...... T Consensus 83 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~v~~k~D~~~~~~~----- 157 (223) T 6IA7_B 83 KHQAGWPAIASNADGIIYVFNPEVKGSEKELLLWYKNFALNQDELDDDNNFKMRVTDGHSLIFSHHSSLPEFAVG----- 157 (223) T ss_dssp ------CCCCTTEEEEEEEECTTSTTHHHHHHHHHHHC-----------------CCSSEEEEEECSSCCSSSSG----- T ss_pred hhcccHHHHhcCCcEEEEEeCcCCCccHHHHHHHHHHHHhcccccCCCcccccccCCCeEEEEEECCCCcccccC----- Confidence 877778888889999999999998777665533332222211 124679999999998652111 Q sequence1 136 KMKQEPVKPEEGRDMANRIGAFGYMECSAK-TKDGVREVFEMATRAAL 182 (184) Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~i~~~~~~~~~~~~ 182 (184) ......++.......++++|++ ++.++.++|.++...+. T Consensus 158 --------~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~l~~~~~ 197 (223) T 6IA7_B 158 --------DNAIPPMPKQLQGIRALETSLDYQSDNFKEAFDALVEQII 197 (223) T ss_dssp --------GGSSCCCCGGGTTSEEEEECSSSSCCCHHHHHHHHHHHHH T ss_pred --------cccCCCCChhhCCCeEEEecCccCChhHHHHHHHHHHHHH Confidence 0111112222223578889999 89999999998887764
##### No 169 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6IAE_A Intraflagellar transport protein 22; Intraflagellar transport protein 22, cilium; HET: GTP; 2.49A {Trypanosoma brucei brucei (strain 927/4 GUTat10.1)} Probab=99.70 E-value=2.9e-21 Score=134.19 Aligned_cols=168 Identities=16% Similarity=0.173 Sum_probs=99.5 Template_Neff=11.300 Q sequence1 2 AMGSPIRKKLVIVGDGACGKTCLLIVNSKDQ--FPEVYVPTVFENY-VADIEVD-----------GKQVELALWDTAGLE 67 (184) Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~--~~~~~~~t~~~~~-~~~~~~~-----------~~~~~~~i~D~~g~~ 67 (184) ++.....++|+++|..++|||||++++.... ......++..... ....... +....+.+||++|.+ T Consensus 3 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 82 (223) T 6IAE_A 3 ASMSDDLVKILVLGPSKSGKSTVTNFLAGTRDTPTKEYHETNPLRVLEVEIALDDTRRSGRQAAGLKKAVVQLWDVGGSS 82 (223) T ss_dssp ----CCCEEEEEECCTTSCHHHHHHHHHSCCC-------CCCSBCCEEEECCC--------------CCEEEEEEBCCC- T ss_pred CccCccceEEEEECCCCCCHHHHHHHHcCCCCCCCcCccCCCCeEEEEEEEecCCcccCCccccCCCeEEEEEEECCCCh Confidence 3456778999999999999999999998632 2222222211111 1111111 235678899999988 Q sequence1 68 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF------------CPNVPIILVGNKKDLRNDEHTRRELA 135 (184) Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~------------~~~~~~~vv~nK~D~~~~~~~~~~~~ 135 (184) .+...+..++..++++++|+|+++..++......+....... ....|+++++||.|+...... T Consensus 83 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~v~~k~D~~~~~~~----- 157 (223) T 6IAE_A 83 KHQAGWPAIASNADGIIYVFNPEVKGSEKELLLWYKNFALNQDELDDDNNFKMRVTDGHSLIFSHHSSLPEFAVG----- 157 (223) T ss_dssp -----CTTSCTTCCEEEEEECTTSTTHHHHHHHHHHHHC-------------CCCCCSCEEEEEECSSCCSSSCS----- T ss_pred hhcccHHHHhcCCcEEEEEeCcCCCccHHHHHHHHHHHHhcccccCCCcccccccCCCeEEEEEECCCCcccccC----- Confidence 877778888889999999999998777665533332222211 124679999999998652111 Q sequence1 136 KMKQEPVKPEEGRDMANRIGAFGYMECSAK-TKDGVREVFEMATRAAL 182 (184) Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~i~~~~~~~~~~~~ 182 (184) ......++.......++++|++ ++.++.++|.++...+. T Consensus 158 --------~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~l~~~~~ 197 (223) T 6IAE_A 158 --------DNAIPPMPKQLQGIRALETSLDYQSDNFKEAFDALVEQII 197 (223) T ss_dssp --------TTSSCCCCTTTTTSCEEEECSSSSCCCHHHHHHHHHHHHH T ss_pred --------cccCCCCChhhCCCeEEEecCccCChhHHHHHHHHHHHHH Confidence 0111112222223578889999 89999999998887764
##### No 170 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2NZJ_B GTP-binding protein REM 1; REM1, GDP/GTP binding, GTP hydrolysis; HET: GDP; 2.5A {Homo sapiens} Probab=99.70 E-value=3.1e-21 Score=128.15 Aligned_cols=165 Identities=28% Similarity=0.334 Sum_probs=99.4 Template_Neff=12.500 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--RPLSYPDTDVI 83 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--~~~~~~~~~~~ 83 (184) .+.++|+++|++++|||||++.+.............................+.+||++|....... .......++++ T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~ 81 (175) T 2NZJ_B 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175) T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCSCCTTSSSSSEEEEEEEETTEEEEEEEECCCC------CHHHHHTTTSCSEE T ss_pred CceEEEEEECCCCCCHHHHHHHHcCCCcccccccccceeEEEEEEECCceEEEEEEECCCccccCcccchhHHhcCCCEE Confidence 3578999999999999999999986653321111111111112223334567889999998765433 23455778999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) ++++++++..++......+....... ....|+++|+||+|+........ .......... ...++++ T Consensus 82 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nk~D~~~~~~~~~------------~~~~~~~~~~-~~~~~~~ 148 (175) T 2NZJ_B 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSV------------EEGRACAVVF-DCKFIET 148 (175) T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCGGGCCSCH------------HHHHHHHHHH-TCEEEEC T ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCcEEEEEehhhcccceecCH------------HHHHHHHHHh-CCEEEEE Confidence 99999988766665543333332211 23689999999999976432110 0000111111 2578899 Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184) |+.++.++.+++.++...+.+ T Consensus 149 S~~~~~~i~~~~~~l~~~~~~ 169 (175) T 2NZJ_B 149 SATLQHNVAELFEGVVRQLRL 169 (175) T ss_dssp BTTTTBSHHHHHHHHHHHHHH T ss_pred ecCCCCCHHHHHHHHHHHHHH Confidence 999999999999998877653
##### No 171 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3Q85_A GTP-binding protein REM 2; G-domain, G-protein, Cav2 beta, SIGNALING; HET: GNP; 1.757A {Mus musculus} Probab=99.70 E-value=3.2e-21 Score=127.28 Aligned_cols=163 Identities=28% Similarity=0.335 Sum_probs=99.3 Template_Neff=12.600 Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLEDYDR-LRPLSYPDTDVILM 85 (184) Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~i~ 85 (184) .++|+++|++++|||+|++++...........+. ...........+....+.+||++|...+.. .+..+...+|++++ T Consensus 2 ~~~i~v~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ii~ 81 (169) T 3Q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169) T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE T ss_pred cEEEEEEcCCCCCHHHHHHHhccCCCCcccccCCCcceeEEEEEeCCCeEEEEEEEeCCCcccchhhHHHHchhCCEEEE Confidence 5789999999999999999997654332211111 111122222333456788999999875543 34445677899999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) |+|.++..++......+........ ...|+++++||.|+....... ......++...+ +.++++|+ T Consensus 82 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s~ 148 (169) T 3Q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS------------LEEGRHLAGTLS-CKHIETSA 148 (169) T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSC------------HHHHHHHHHHTT-CEEEECBT T ss_pred EEeCCChHHhccHHHHHHHHHcCCCCCCCcEEEEEeCCccccccccC------------HHHHHHHHHHhC-CcEEEecC Confidence 9999987766665444443332211 257899999999987632210 111111222222 57899999 Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184) +++.++.++|.++.+.+.. T Consensus 149 ~~~~~i~~~~~~l~~~~~~ 167 (169) T 3Q85_A 149 ALHHNTRELFEGAVRQIRL 167 (169) T ss_dssp TTTBSHHHHHHHHHHHHHH T ss_pred CCCccHHHHHHHHHHHHHh Confidence 9999999999999887653
##### No 172 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1F6B_A SAR1; GTPASES, N-TERMINAL HELIX, MG-CONTAINING COMPLEX; HET: GDP, SO4; 1.7A {Cricetulus griseus} SCOP: c.37.1.8 Probab=99.70 E-value=3.2e-21 Score=132.16 Aligned_cols=172 Identities=21% Similarity=0.244 Sum_probs=101.5 Template_Neff=10.400 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) .....+|+++|.+++|||||++++........ .++.. .....+. .....+.+||++|+..+...+..++..+|+++ T Consensus 22 ~~~~~~i~i~G~~~~GKssli~~l~~~~~~~~-~~t~~-~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~l~~~d~ii 97 (198) T 1F6B_A 22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLH-PTSEELT--IAGMTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198) T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCC-CSCEEEE--ETTEEEEEEEECC----CCGGGGGGGGCSEEE T ss_pred cCCCCEEEEECCCCCCHHHHHHHHcCCCCccc-cccCC-CceeeEE--ECCEEEEEEEcCCCHHHHHHHHHHhhhCCEEE Confidence 45668999999999999999999987654322 11111 1111111 12357889999998877777878888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKP-EEG-RD-MANRIGAFGYM 160 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~-~~-~~~~~~~~~~~ 160 (184) +|+|+++...+......+....... ....|+++++||.|+...... ............. ... .. .........++ T Consensus 98 ~v~d~s~~~~~~~~~~~l~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (198) T 1F6B_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISE-ERLREMFGLYGQTTGKGSVSLKELNARPLEVF 176 (198) T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCH-HHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE T ss_pred EEEECCChHhHHHHHHHHHHHhcChhhcCCCEEEEEeCCCCCCCCCH-HHHHHHhhhccCcCCCCcccHHhhcCCeEEEE Confidence 9999987665555444444333221 236899999999999753211 1111110000000 000 00 00011125688 Q sequence1 161 ECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~ 181 (184) ++||.++.|+.+++.++.+.+ T Consensus 177 ~~sa~~~~~i~~~~~~l~~~~ 197 (198) T 1F6B_A 177 MCSVLKRQGYGEGFRWMAQYI 197 (198) T ss_dssp ECBTTTTBSHHHHHHHHHTTC T ss_pred EeecCcCCCHHHHHHHHHhhc Confidence 999999999999999887653
##### No 173 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3Q85_B GTP-binding protein REM 2; G-domain, G-protein, Cav2 beta, SIGNALING; HET: GNP; 1.757A {Mus musculus} Probab=99.70 E-value=3.3e-21 Score=127.10 Aligned_cols=163 Identities=28% Similarity=0.339 Sum_probs=99.4 Template_Neff=12.700 Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLEDYDR-LRPLSYPDTDVILM 85 (184) Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~i~ 85 (184) .++|+++|.+++|||+|++++............. ..........++....+.+||++|...+.. .+..+...+|++++ T Consensus 2 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~ 81 (169) T 3Q85_B 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169) T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC------CTTHHHHHCSEEEE T ss_pred cEEEEEEcCCCcCHHHHHHHhccCCCCcccccCCCCceeEEEEEeCCCeEEEEEEEeCCCcccchhhHHHHhhhCCEEEE Confidence 5789999999999999999987654322211111 111122222333456788999999875543 34456678899999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) |+|..+..++......+....... ....|+++++||.|+....... ......++...+ ..++++|+ T Consensus 82 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s~ 148 (169) T 3Q85_B 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS------------LEEGRHLAGTLS-CKHIETSA 148 (169) T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSC------------HHHHHHHHHHTT-CEEEECBT T ss_pred EEeCCChHHhccHHHHHHHHHcCCCCCCCcEEEEEeCccccccceeC------------HHHHHHHHHHhC-CeEEEeCC Confidence 999998766665544343333221 1357899999999987532210 011111222222 57899999 Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184) +++.++.++|+++.+.+.. T Consensus 149 ~~~~~i~~~~~~l~~~i~~ 167 (169) T 3Q85_B 149 ALHHNTRELFEGAVRQIRL 167 (169) T ss_dssp TTTBSHHHHHHHHHHHHHH T ss_pred CCCcCHHHHHHHHHHHHHh Confidence 9999999999998877643
##### No 174 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2ZET_A Ras-related protein Rab-27B, Melanophilin; COMPLEX, GTP-BINDING PROTEIN, GTPASE, G-PROTEIN; HET: SO4, GTP; 3.0A {Mus musculus} Probab=99.70 E-value=3.3e-21 Score=132.26 Aligned_cols=164 Identities=29% Similarity=0.469 Sum_probs=106.8 Template_Neff=11.100 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVD----------GKQVELALWDTAGLEDYDRLRP 74 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~ 74 (184) ...++|+++|.+++|||||++++..........++....+ ......+ .....+.+||++|+..+...+. T Consensus 9 ~~~~~i~ivG~~~~GKstll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~~~~~ 88 (203) T 2ZET_A 9 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTT 88 (203) T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCSEEEEEEEEEEECCCC---CCCEEEEEEEEEEECCSSTTHHHHH T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCCCCcccCceeeeeeEEeEEEecCCCCCCCCCCceEEEEEEEeCCCcHHHHHHhH Confidence 4578999999999999999999887654322211111111 0000000 1135688999999988887888 Q sequence1 75 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 153 (184) Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184) .+...++++++|+|+++..++.....++....... ....|+++++||+|+....... .......+.. T Consensus 89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~------------~~~~~~~~~~ 156 (203) T 2ZET_A 89 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVN------------ERQARELAEK 156 (203) T ss_dssp HGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSSSSSCEEEEEEECTTCGGGCCSC------------HHHHHHHHHH T ss_pred HHHccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCcEEEEEeccCCcccccCC------------HHHHHHHHHH Confidence 88889999999999998766665543333332211 2357899999999986532110 0111111222 Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) .. .+++++|+.++.++.++|.++...+. T Consensus 157 ~~-~~~~~~S~~~~~~i~~~~~~l~~~i~ 184 (203) T 2ZET_A 157 YG-IPYFETSAATGQNVEKSVETLLDLIM 184 (203) T ss_dssp TT-CCEEEECTTTCTTHHHHHHHHHHHHH T ss_pred hC-CCEEEEeCCCCCCHHHHHHHHHHHHH Confidence 22 56889999999999999998887664
##### No 175 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5XC3_A Probable Rab-related GTPase; Rab GTPase, Acanthamoeba polyphaga mimivirus; HET: GDP; 1.497A {Acanthamoeba polyphaga mimivirus} Probab=99.70 E-value=3.7e-21 Score=128.87 Aligned_cols=165 Identities=19% Similarity=0.297 Sum_probs=108.4 Template_Neff=11.500 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIE-VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ....+|+++|..++|||+|++++..........++....+. .... .......+.+||++|++.+...+..+...++++ T Consensus 3 ~~~~~i~ivG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 82 (176) T 5XC3_A 3 NNGYKIILIGSSGVGKSSIVHQFLFNRKISNVSPTIGAAFASKQVIAKNGKTLKLNIWDTAGQERFRSITKMYYTNSLGC 82 (176) T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSSCCTTCCCCTTSCSEEEEEECTTSCEEEEEEECCSSGGGGTCCCHHHHTTCSEE T ss_pred CCCeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeeCCeEEEEEEEeCCCChhhhhhhhhhccCCeEE Confidence 45789999999999999999998866543322222111111 1111 122346788999999877766677777889999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++++|+....++.....++...........|+++++||.|+...... ........++...+ ..++++| T Consensus 83 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~k~d~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~s 150 (176) T 5XC3_A 83 LVVFDVTDRESFDDVYYWINDLRINCHTTYYILVVANKIDIDKNNWR-----------VSENEIKKFCRDND-CDYVFAS 150 (176) T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHCSCCCEEEEEEECTTSCGGGCC-----------CCHHHHHHHHHHTT-CEEEECC T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEechhcCCCCCc-----------CCHHHHHHHHHHCC-CCEEEEe Confidence 99999988766666533333332222346789999999998653210 01122223333333 6789999 Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184) +.++.|+.++|+.+.+.+. T Consensus 151 ~~~~~~i~~~f~~i~~~~~ 169 (176) T 5XC3_A 151 SFESDTVNNLFGKMIDKMS 169 (176) T ss_dssp TTCHHHHHHHHHHHHHHHT T ss_pred CCCCccHHHHHHHHHHHHh Confidence 9999999999999887664
##### No 176 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6ZAY_A Ras-related protein Rab-33B, Autophagy-related protein; ATG16L autophagy autophagosome; HET: PO4, GDP, EDO, PEG; 2.4A {Homo sapiens} Probab=99.70 E-value=4e-21 Score=130.80 Aligned_cols=165 Identities=26% Similarity=0.479 Sum_probs=104.8 Template_Neff=11.000 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGLEDYD-RLRPLSYPDTDV 82 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~ 82 (184) ..+..+|+++|.+++|||+|++++..........++....+. ......+....+.+||++|...+. ..+..+...+++ T Consensus 4 ~~~~~~i~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 83 (192) T 6ZAY_A 4 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 83 (192) T ss_dssp CCEEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSHHHHTTTHHHHHTTCCE T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcceeeEEEEEEEECCEEEEEEEEeCCCcHHhhHhhHHHHhhhCCE Confidence 456789999999999999999998876553322222221111 112233445678999999987664 455666778999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184) +++|+|++++.++......+....... ....|+++|+||+|+........ .....++... ...+++ T Consensus 84 ~ilv~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~vlv~~k~D~~~~~~~~~------------~~~~~~~~~~-~~~~~~ 150 (192) T 6ZAY_A 84 VVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGNKCDLRSAIQVPT------------DLAQKFADTH-SMPLFE 150 (192) T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCSCSCCCEEEEEECTTCGGGCCSCH------------HHHHHHHHHT-TCCEEE T ss_pred EEEEecCCCchhhhhHHHHHHHHHHHccccCCCEEEEEecccccccccCCH------------HHHHHHHHHc-CCCEEE Confidence 999999998776655543333332221 23679999999999875321110 0011111121 256778 Q sequence1 162 CSAKT---KDGVREVFEMATRAAL 182 (184) Q Consensus 162 ~s~~~---~~~i~~~~~~~~~~~~ 182 (184) +|+.+ ++++.++|.++...+. T Consensus 151 ~s~~~~~~~~~~~~~~~~l~~~~~ 174 (192) T 6ZAY_A 151 TSAKNPNDNDHVEAIFMTLAHKLK 174 (192) T ss_dssp CCSSSTTSSSCHHHHHHHHHHHHH T ss_pred eecCCCCCcccHHHHHHHHHHHHH Confidence 88887 5678888888776553
##### No 177 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6D71_A Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); GTPase, mitochondria, Miro, Rho, GEM1P; HET: GTP; 1.71807785325A {Homo sapiens} Probab=99.70 E-value=4.1e-21 Score=128.76 Aligned_cols=163 Identities=25% Similarity=0.409 Sum_probs=108.1 Template_Neff=12.500 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC 86 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (184) ...+|+++|..|+|||||++++..........+..... ............+.+||++|.+.+...+..+...+|++++| T Consensus 9 ~~~~v~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 87 (186) T 6D71_A 9 KDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEI-TIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQANVICIV 87 (186) T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSSCCSSCCSSCCCE-EECGGGSTTSSCEEEEECCTTTSCHHHHHHHHHHCSEEEEE T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCCccce-eeeccCCCCeEEEEEEecCCCCCCHHHHHHHhccCCEEEEE Confidence 45789999999999999999998765443222221111 11112233456789999999887776777778899999999 Q sequence1 87 FSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) +|+++..++......+...+.... ...|+++|+||+|+....... .... .. ........++++| T Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~-~~~~---------~~---~~~~~~~~~~~~s 154 (186) T 6D71_A 88 YAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLVEYSSME-TILP---------IM---NQYTEIETCVECS 154 (186) T ss_dssp EETTCHHHHHHCCCCCHHHHTTCSCTTSCCCEEEEEECGGGCSSCSHH-HHHH---------HH---HHCTTEEEEEECB T ss_pred EECCChHHHHHHHHhHHHHHHhhCCCCCCCcEEEEEeccccCCccchh-hHHH---------HH---hHhhcCcceEEee Confidence 999987666655444444443322 268999999999987532111 0000 00 0111125688999 Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184) +.++.++.+++.++.+.+.+ T Consensus 155 ~~~~~~i~~~~~~i~~~~~~ 174 (186) T 6D71_A 155 AKNLKNISELFYYAQKAVLH 174 (186) T ss_dssp TTTTBSHHHHHHHHHHHHHS T ss_pred cCcCCCHHHHHHHHHHHHhC Confidence 99999999999998877643
##### No 178 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6D71_B Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); GTPase, mitochondria, Miro, Rho, GEM1P; HET: GTP; 1.71807785325A {Homo sapiens} Probab=99.70 E-value=4.2e-21 Score=128.85 Aligned_cols=163 Identities=25% Similarity=0.421 Sum_probs=106.6 Template_Neff=12.400 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) ....+|+++|..++|||||++++..........+..... ............+.+||++|++.+...+..++..+|++++ T Consensus 8 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 86 (186) T 6D71_B 8 KKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEI-TIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQANVICI 86 (186) T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHTSCCSSCCSSCCCE-EECGGGSTTCCCEEEEECCTTTCCHHHHHHHHHHCSEEEE T ss_pred cCccEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCceee-eecCCCCCCeeeEEEEecCCCcCCHHHHHHHhccCCEEEE Confidence 356789999999999999999998765443222211111 1111222344578999999988777777777788999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) |+|+++..++......+...+.... ...|+++|+||.|+........ .. .. .........++++ T Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~~-~~---------~~---~~~~~~~~~~~~~ 153 (186) T 6D71_B 87 VYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLVEYSSMET-IL---------PI---MNQYTEIETCVEC 153 (186) T ss_dssp EEETTCHHHHHHCCCCCHHHHHTTSCTTSCCCEEEEEECGGGCSSCSHHH-HH---------HH---HHHCTTEEEEEC- T ss_pred EEECCChHHHHHHHHhHHHHHHHhCCCCCCCCEEEEEEchhcCCccchHh-HH---------HH---HHhhhccceEEEc Confidence 9999987666655444444443322 2689999999999975321110 00 00 0001112568899 Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184) |++++.++.++++++.+.+. T Consensus 154 s~~~~~~i~~l~~~i~~~~~ 173 (186) T 6D71_B 154 SAKNLKNISELFYYAQKAVL 173 (186) T ss_dssp CTTTCTTHHHHHHHHHHHHC T ss_pred ccccCCCHHHHHHHHHHHhh Confidence 99999999999999887764
##### No 179 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2NZJ_A GTP-binding protein REM 1; REM1, GDP/GTP binding, GTP hydrolysis; HET: GDP; 2.5A {Homo sapiens} Probab=99.70 E-value=4.4e-21 Score=127.65 Aligned_cols=165 Identities=28% Similarity=0.328 Sum_probs=96.2 Template_Neff=12.300 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLR--PLSYPDTDVI 83 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--~~~~~~~~~~ 83 (184) .+.++|+++|++++|||||++++.......................+.....+.+||++|...+...+ ......++++ T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~ 81 (175) T 2NZJ_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175) T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE T ss_pred CceEEEEEECCCCCCHHHHHHHHcCCCcccccccccceEEEEEEEECCeEEEEEEEECCCccccCcccchhHHhcCCCEE Confidence 35789999999999999999999866432211111111111122233345678899999987654432 3345778899 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) ++++++++..++......+....... ....|+++++||.|+........ ......+... ...++++ T Consensus 82 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~------------~~~~~~~~~~-~~~~~~~ 148 (175) T 2NZJ_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSV------------EEGRACAVVF-DCKFIET 148 (175) T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCH------------HHHHHHHHHH-TSEEEEC T ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCcEEEEEechhcccceecCH------------HHHHHHHHHh-CCeEEEE Confidence 99999988766655433333322211 23689999999999976321100 0001111111 2568899 Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184) |++++.++.+++.++...+.+ T Consensus 149 s~~~~~~i~~~~~~l~~~~~~ 169 (175) T 2NZJ_A 149 SATLQHNVAELFEGVVRQLRL 169 (175) T ss_dssp BTTTTBSHHHHHHHHHHHHHH T ss_pred EcCCCCCHHHHHHHHHHHHHh Confidence 999999999999998876643
##### No 180 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2F9L_A RAB11B, member RAS oncogene family; Rab11b GTPase, vesicle transport, HYDROLASE; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 Probab=99.70 E-value=4.4e-21 Score=130.93 Aligned_cols=165 Identities=29% Similarity=0.432 Sum_probs=107.5 Template_Neff=11.500 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ....++|+++|..|+|||+|++++..........++....+ ............+.+||++|.+.+...+.....+++++ T Consensus 2 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 81 (199) T 2F9L_A 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA 81 (199) T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE T ss_pred CCceEEEEEECCCCCChHHHHHHHhcCCCCCCCCcceEEEEEEEEEEECCEEEEEEEEeCCCChhhHHhhHHHhccCCEE Confidence 35678999999999999999999887654322222111111 11122233456788999999887776677777889999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|++..+...+....+.+...........|+++++||.|+....... ......++...+ ..++.+| T Consensus 82 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~vilv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s 148 (199) T 2F9L_A 82 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP------------TDEARAFAEKNN-LSFIETS 148 (199) T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHTT-CEEEECC T ss_pred EEEEcCCChHHHHHHHHHHHHHHHhCCCCCeEEEEEecchhhhccCCC------------HHHHHHHHHHCC-CcEEEee Confidence 999999876655555333333332222468999999999986532110 111111222222 5688999 Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184) +.++.++.++|.++...+. T Consensus 149 ~~~~~~i~~~~~~l~~~~~ 167 (199) T 2F9L_A 149 ALDSTNVEEAFKNILTEIY 167 (199) T ss_dssp TTTCTTHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHH Confidence 9999999999999887764
##### No 181 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2F9M_A RAB11B, member RAS oncogene family; Rab11b GTPase, vesicle transport, HYDROLASE; HET: GNP; 1.95A {Homo sapiens} SCOP: c.37.1.8 Probab=99.70 E-value=4.4e-21 Score=130.93 Aligned_cols=165 Identities=29% Similarity=0.432 Sum_probs=108.2 Template_Neff=11.500 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ....++|+++|..|+|||+|++++..........++....+ ............+.+||++|.+.+...+.....+++++ T Consensus 2 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 81 (199) T 2F9M_A 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA 81 (199) T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCSEE T ss_pred CCceEEEEEECCCCCChHHHHHHHhcCCCCCCCCcceEEEEEEEEEEECCEEEEEEEEeCCCChhhHHhhHHHhccCCEE Confidence 35678999999999999999999887654322222111111 11122233456788999999887776677777889999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|++..+...+....+.+...........|+++++||.|+....... ......++...+ ..++.+| T Consensus 82 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~vilv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s 148 (199) T 2F9M_A 82 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP------------TDEARAFAEKNN-LSFIETS 148 (199) T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC------------HHHHHHHHHHTT-CEEEECC T ss_pred EEEEcCCChHHHHHHHHHHHHHHHhCCCCCeEEEEEecchhhhccCCC------------HHHHHHHHHHCC-CcEEEee Confidence 999999876655555333333332222468999999999986532110 111111222222 5688999 Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184) +.++.++.++|.++...+. T Consensus 149 ~~~~~~i~~~~~~l~~~~~ 167 (199) T 2F9M_A 149 ALDSTNVEEAFKNILTEIY 167 (199) T ss_dssp TTTCTTHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHH Confidence 9999999999999887764
##### No 182 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1MOZ_B ADP-ribosylation factor-like 1 (ARL1) from; GTP-BINDING, PROTEIN BINDING; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Probab=99.69 E-value=5e-21 Score=129.12 Aligned_cols=164 Identities=18% Similarity=0.244 Sum_probs=105.0 Template_Neff=11.400 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ..+.++|+++|++++|||||++++........ .++.... . .........+.+||++|+..+...+..++..+++++ T Consensus 15 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~~~~~~-~--~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 90 (183) T 1MOZ_B 15 SNKELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFN-V--ETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183) T ss_dssp CSSCEEEEEEEETTSSHHHHHHHTCCSEEEEE-CSSTTCC-E--EEEEETTEEEEEEEEC----CCTTSTTTTTTEEEEE T ss_pred CCCCeEEEEEcCCCCCHHHHHHHhcCCCCCCC-CCccceE-E--EEEEECCEEEEEEEcCCCcccHhHHHHHcccCCEEE Confidence 45678999999999999999999986544321 1111111 1 112223567899999999888777888888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) +|++.++..++......+....... ....|+++++||.|+........ ... ......... ...+++.+| T Consensus 91 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~nK~D~~~~~~~~~-~~~--------~~~~~~~~~-~~~~~~~~s 160 (183) T 1MOZ_B 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASE-VSK--------ELNLVELKD-RSWSIVASS 160 (183) T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHH-HHH--------HTTTTTCCS-SCEEEEEEB T ss_pred EEEECCChhhHHHHHHHHHHHHcchhhCCCEEEEEEECCCCCCCCCHHH-HHH--------HcChHHhcC-CCeEEEECC Confidence 9999998766655544444433222 23588999999999876321111 000 000000111 125688999 Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184) ++++.|+.++|.++.+.+. T Consensus 161 ~~~~~~~~~~~~~l~~~~~ 179 (183) T 1MOZ_B 161 AIKGEGITEGLDWLIDVIK 179 (183) T ss_dssp GGGTBTHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHH Confidence 9999999999999887654
##### No 183 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2EFE_D Similarity to vacuolar protein sorting-associated; GEF, GTPase, Vps9, Rab5, nucleotide; HET: GNH; 2.08A {Arabidopsis thaliana} Probab=99.69 E-value=5.1e-21 Score=128.22 Aligned_cols=166 Identities=31% Similarity=0.478 Sum_probs=108.7 Template_Neff=12.100 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) ......+|+++|..++|||+|++++..........+.....+ .......+....+.+||++|+..+...+..+...+++ T Consensus 8 ~~~~~~~i~~vG~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (181) T 2EFE_D 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181) T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEECSSCEEEEEEEECCCSGGGGGGTHHHHTTCSE T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCccccCcceeEEEEEEEEEeCCeEEEEEEEeCCCChhhHhcchhhhCCCCE Confidence 456678999999999999999999987654332222111111 1112223345678999999988777777777788999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++++|+.+..++......+...........|+++++||.|+...... .......++.... ..++.+ T Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~d~~~~~~~------------~~~~~~~~~~~~~-~~~~~~ 154 (181) T 2EFE_D 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKV------------TAEDAQTYAQENG-LFFMET 154 (181) T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCCTTCCS------------CHHHHHHHHHHTT-CEEEEC T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCCCcEEEEEEeCccccccccC------------CHHHHHHHHHHcC-CeEEEE Confidence 999999998666555433333332222346788999999998653211 0111111222222 567899 Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184) |++++.++.+++.++...+. T Consensus 155 s~~~~~~i~~~~~~l~~~~~ 174 (181) T 2EFE_D 155 SAKTATNVKEIFYEIARRLP 174 (181) T ss_dssp CSSSCTTHHHHHHHHHHTCC T ss_pred eCCCCCCHHHHHHHHHHHHh Confidence 99999999999999887654
##### No 184 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2EFH_B Similarity to vacuolar protein sorting-associated; GEF, GTPase, Vps9, Rab5, nucleotide; HET: GDP; 2.1A {Arabidopsis thaliana} Probab=99.69 E-value=5.1e-21 Score=128.22 Aligned_cols=166 Identities=31% Similarity=0.478 Sum_probs=104.1 Template_Neff=12.100 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) ......+|+++|..++|||+|++++..........+.....+ .......+....+.+||++|+..+...+..+...+++ T Consensus 8 ~~~~~~~i~~vG~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (181) T 2EFH_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181) T ss_dssp --CEEEEEEEECCTTSSHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCCCSGGGGGGHHHHHTTCSE T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCccccCcceeEEEEEEEEEeCCeEEEEEEEeCCCChhhHhcchhhhCCCCE Confidence 456678999999999999999999987654332222111111 1112223345678999999988777777777788999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++++|+.+..++......+...........|+++++||.|+...... .......++.... ..++.+ T Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~d~~~~~~~------------~~~~~~~~~~~~~-~~~~~~ 154 (181) T 2EFH_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKV------------TAEDAQTYAQENG-LFFMET 154 (181) T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCSTTCCS------------CHHHHHHHHHHTT-CEEEEC T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCCCcEEEEEEeCccccccccC------------CHHHHHHHHHHcC-CeEEEE Confidence 999999998666555433333332222346788999999998653211 0111111222222 567899 Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184) |++++.++.+++.++...+. T Consensus 155 s~~~~~~i~~~~~~l~~~~~ 174 (181) T 2EFH_B 155 SAKTATNVKEIFYEIARRLP 174 (181) T ss_dssp CTTTCTTHHHHHHHHHHHCC T ss_pred eCCCCCCHHHHHHHHHHHHh Confidence 99999999999999887654
##### No 185 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4G01_B Vacuolar protein sorting-associated protein 9A; GTPase-GDP-metal-GEF complex, vps9 domain, Ras; HET: GDP; 2.2A {Arabidopsis thaliana} Probab=99.69 E-value=5.1e-21 Score=128.22 Aligned_cols=166 Identities=31% Similarity=0.478 Sum_probs=108.7 Template_Neff=12.100 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) ......+|+++|..++|||+|++++..........+.....+ .......+....+.+||++|+..+...+..+...+++ T Consensus 8 ~~~~~~~i~~vG~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (181) T 4G01_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181) T ss_dssp --CEEEEEEEECCTTSSHHHHHHHHHHHHGGGCCCEEECSSEEEEEEEETTEEEEEEEECCCCCGGGGGGHHHHHTTCSE T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCccccCcceeEEEEEEEEEeCCeEEEEEEEeCCCChhhHhcchhhhCCCCE Confidence 456678999999999999999999987654332222111111 1112223345678999999988777777777788999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++++|+.+..++......+...........|+++++||.|+...... .......++.... ..++.+ T Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~d~~~~~~~------------~~~~~~~~~~~~~-~~~~~~ 154 (181) T 4G01_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKV------------TAEDAQTYAQENG-LFFMET 154 (181) T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS------------CHHHHHHHHHHTT-CEEEEC T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCCCcEEEEEEeCccccccccC------------CHHHHHHHHHHcC-CeEEEE Confidence 999999998666555433333332222346788999999998653211 0111111222222 567899 Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184) |++++.++.+++.++...+. T Consensus 155 s~~~~~~i~~~~~~l~~~~~ 174 (181) T 4G01_B 155 SAKTATNVKEIFYEIARRLP 174 (181) T ss_dssp CTTTCTTHHHHHHHHHHHCC T ss_pred eCCCCCCHHHHHHHHHHHHh Confidence 99999999999999887654
##### No 186 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6IAN_E Intraflagellar transport protein 22; Intraflagellar transport protein 22, IFT74; HET: GTP, MSE; 3.2A {Trypanosoma brucei brucei (strain 927/4 GUTat10.1)} Probab=99.69 E-value=5.2e-21 Score=132.85 Aligned_cols=165 Identities=15% Similarity=0.187 Sum_probs=105.8 Template_Neff=11.100 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQ--FPEVYVPTVFEN-YVADIEVD-----------GKQVELALWDTAGLEDYDR 71 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~--~~~~~~~t~~~~-~~~~~~~~-----------~~~~~~~i~D~~g~~~~~~ 71 (184) ...++|+++|..++|||+|++++.... +.....++.... ....+... +....+.+||++|++.+.. T Consensus 3 ~~~~ki~i~G~~~~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 82 (220) T 6IAN_E 3 DDLVKILVLGPSKSGKSTVTNFLAGTRDTPTKEYHETNPLRVLEVEIALDDTRRSGRQAAGLKKAVVQLWDVGGSSKHQA 82 (220) T ss_dssp CCCEEEEEECCTTSSHHHHHHHHSSCCSCCCTTCCCCCSEEEEEECCCCC---------------CEEEEEECCCSSTTT T ss_pred CcceEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCcccccEEEEEEEeCccccCCccccCCcEEEEEEEECCCChHHHH Confidence 467899999999999999999988632 222222221111 11111111 2356789999999988888 Q sequence1 72 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-------------PNVPIILVGNKKDLRNDEHTRRELAKMK 138 (184) Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~~~~vv~nK~D~~~~~~~~~~~~~~~ 138 (184) .+..++..++++++|+|+++..++.... .|...+.... ...|+++|+||.|+.........+.. T Consensus 83 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~vlv~~k~D~~~~~~~~~~~~~-- 159 (220) T 6IAN_E 83 GWPAIASNADGIIYVFNPEVKGSEKELL-LWYKNFALNQDELDDDNNFKMRVTDGHSLIFSHHSSLPEFAVGDNAIPP-- 159 (220) T ss_dssp THHHHHTTCCEEEEEECTTSTTHHHHHH-HHHHHCC--------------CCCSSCCEEEEECSSSCSSTTTTC--CC-- T ss_pred HHHHHHhcCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCCCCCCCccccCCCEEEEEeccccccccCCHHHHHH-- Confidence 8888889999999999999987776664 3333332221 25789999999998762211111000 Q sequence1 139 QEPVKPEEGRDMANRIGAFGYMECSAK-TKDGVREVFEMATRAALQ 183 (184) Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~i~~~~~~~~~~~~~ 183 (184) ....... .+.++++|++ ++.++.++|.++.+.+.+ T Consensus 160 ---------~~~~~~~-~~~~~~~S~~~~~~~v~~~~~~l~~~~~~ 195 (220) T 6IAN_E 160 ---------MPPKQLQ-GIRALETSLDYQSDNFKEAFDALVEQIIA 195 (220) T ss_dssp ---------CC-TTTC-SSCEEEECSSSSCCCCHHHHHHHHHHHHH T ss_pred ---------HHHHHHC-CCCEEEecccccCCcHHHHHHHHHHHHHH Confidence 0001112 2578899999 999999999998887653
##### No 187 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2G77_B GTPase-activating protein GYP1, Ras-related protein; Protein transport, Gyp1 TBC domain; HET: MSE, GDP; 2.26A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Probab=99.69 E-value=5.4e-21 Score=130.43 Aligned_cols=167 Identities=25% Similarity=0.472 Sum_probs=109.4 Template_Neff=11.500 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYD-RLRPLSYPDTD 81 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~ 81 (184) .....++|+++|.+++|||||++++..........++..... ...+...+....+.+||++|.+.+. ..+..+...++ T Consensus 25 ~~~~~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 104 (198) T 2G77_B 25 ARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 104 (198) T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSHHHHTTTGGGGCTTCC T ss_pred CccccEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCCcccEEEEEEEeCCcEEEEEEEeCCchHHHHHHHHHHHHccCC Confidence 456778999999999999999999987654332222221111 1122233445678999999987664 56666778899 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184) ++++|+|+.+..++......+....... ....|+++|+||.|+....... ......++...+ ..++ T Consensus 105 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~ 171 (198) T 2G77_B 105 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVP------------TDLAQKFADTHS-MPLF 171 (198) T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHTTCSCSSSCEEEEEECTTCGGGCCSC------------HHHHHHHHHHTT-CCEE T ss_pred EEEEEeeCCChHHhhhHHHHHHHHHHHhccCCCCEEEEeecchhhhccCCC------------HHHHHHHHHHcC-CCEE Confidence 9999999988766655544333332221 2367999999999987532110 011111222222 5788 Q sequence1 161 ECSAKT---KDGVREVFEMATRAALQ 183 (184) Q Consensus 161 ~~s~~~---~~~i~~~~~~~~~~~~~ 183 (184) .+|+++ +.++.++|.++.+.+.+ T Consensus 172 ~~s~~~~~~~~~i~~~~~~l~~~i~~ 197 (198) T 2G77_B 172 ETSAKNPNDNDHVEAIFMTLAHKLKS 197 (198) T ss_dssp ECCSSCGGGHHHHHHHHHHHHHHHHT T ss_pred EeecCCCCCcccHHHHHHHHHHHHhc Confidence 999998 78899999998887654
##### No 188 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3E5H_A Crystal Structure of Rab28 GTPase; Rab GTPase, SIGNALING PROTEIN, Cell; HET: GOL, GNP; 1.499A {Homo sapiens} Probab=99.69 E-value=5.6e-21 Score=127.38 Aligned_cols=166 Identities=27% Similarity=0.359 Sum_probs=109.8 Template_Neff=12.400 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVD-GKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) ..+..+|+++|.+++|||+|++++....+.....++..... ....... .....+.+||++|...+...+..++..+|+ T Consensus 3 ~~~~~~i~i~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 82 (178) T 3E5H_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178) T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSEEEEEEEEEETTTEEEEEEEEEECGGGGGSSHHHHHHTTCSE T ss_pred CcceEEEEEECCCCCCHHHHHHHHhhcccCCccCceeEEEEEEEEEEcCCCceEEEEEEeCCCCcccchhhHHHhccCcE Confidence 45778999999999999999999986655433322221111 1111221 225678899999988777778888889999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 159 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184) +++|+|+++..++......+....... ....|+++++||.|........ ......++...+ +.+ T Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~k~d~~~~~~~~------------~~~~~~~~~~~~-~~~ 149 (178) T 3E5H_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIK------------PEKHLRFCQENG-FSS 149 (178) T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEEEECGGGGGGCCSC------------HHHHHHHHHHHT-CEE T ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhccCCCCCCEEEEEeeCcccccccccC------------HHHHHHHHHHcC-CcE Confidence 999999998665555433222222111 1368899999999986532110 111112222222 567 Q sequence1 160 MECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 160 ~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) +.+|+.++.++.++|.++.+.+.. T Consensus 150 ~~~s~~~~~~i~~~~~~l~~~~~~ 173 (178) T 3E5H_A 150 HFVSAKTGDSVFLCFQKVAAEILG 173 (178) T ss_dssp EECCTTTCTTHHHHHHHHHHHHHT T ss_pred EEEeCCCCCCHHHHHHHHHHHHhc Confidence 889999999999999998887653
##### No 189 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1ZD9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 Probab=99.69 E-value=5.6e-21 Score=129.25 Aligned_cols=166 Identities=20% Similarity=0.286 Sum_probs=110.6 Template_Neff=11.600 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ....++|+++|+.++|||+|++++....+.....++....+. ........+.+||++|++.+...+..++..+|+++ T Consensus 19 ~~~~~~i~i~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 95 (188) T 1ZD9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR---KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188) T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE---EEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE T ss_pred CccceEEEEECCCCCCHHHHHHHHHcCCCCCCccCCcceEEE---EeeeCcEEEEEEecCCCHHHHHHHHHHhcCCCEEE Confidence 456789999999999999999999876544322222111111 12234567899999998888777777888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) +|+|+.+..++......+....... ....|+++++||.|+........ ... ......... ....++.+| T Consensus 96 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~k~D~~~~~~~~~-~~~--------~~~~~~~~~-~~~~~~~~s 165 (188) T 1ZD9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKE-LIE--------KMNLSAIQD-REICCYSIS 165 (188) T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHH-HHH--------HTTGGGCCS-SCEEEEECC T ss_pred EEEeCCCHHHHHHHHHHHHHHhcChhhcCCCEEEEEeCCCCCCCCCHHH-HHH--------HcChhhhcC-CceEEEEEe Confidence 9999998766665544444443321 13579999999999876321111 000 000001111 125788999 Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184) ++++.++.+++.++.+.+.+ T Consensus 166 ~~~~~~i~~~~~~l~~~~~~ 185 (188) T 1ZD9_A 166 CKEKDNIDITLQWLIQHSKS 185 (188) T ss_dssp TTTCTTHHHHHHHHHHTCC- T ss_pred cCCCccHHHHHHHHHHHHHh Confidence 99999999999999887754
##### No 190 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6EKK_C DENN domain-containing protein 1A, Ras-related; DENND1A- DENN domain-containing protein 1A; HET: SO4, GDP, EDO; 1.82A {Homo sapiens} Probab=99.69 E-value=5.9e-21 Score=127.15 Aligned_cols=165 Identities=30% Similarity=0.563 Sum_probs=109.4 Template_Neff=12.300 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) ...+..+|+++|+.++||||+++++..........+...... .......+....+.+||++|...+...+..++..+++ T Consensus 2 ~~~~~~~i~l~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 81 (176) T 6EKK_C 2 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 81 (176) T ss_dssp CCSEEEEEEEECCTTSSHHHHHHHHCCCSSCCCCHHHHSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE T ss_pred CccccEEEEEECCCCCCHHHHHHHHhcCCCCCCccceeEEEEEEEEEEECCEEEEEEEEeCCCCccchhhhHHHccCCCE Confidence 346788999999999999999999987654332222111111 1122233345678899999988777777778889999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++|+|+++..++.... .+...+.......|+++++||.|........ .......+.... ..++.+ T Consensus 82 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~k~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~~ 147 (176) T 6EKK_C 82 VIVVYDVTSAESFVNVK-RWLHEINQNCDDVCRILVGNKNDDPERKVVE------------TEDAYKFAGQMG-IQLFET 147 (176) T ss_dssp EEEEEETTCHHHHHHHH-HHHHHHHHHCTTSEEEEEEECCCCGGGCCSC------------HHHHHHHHHHHT-CCEEEC T ss_pred EEEEEeCCCHHHHHHHH-HHHHHHHHhCCCceEEEEEecCCCcccccCC------------HHHHHHHHHHhC-CcEEEc Confidence 99999998876665543 2333333322367889999999987532210 011111122222 568899 Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184) |++++.++.+++.++.+.+. T Consensus 148 s~~~~~~i~~~~~~l~~~~~ 167 (176) T 6EKK_C 148 SAKENVNVEEMFNCITELVL 167 (176) T ss_dssp BTTTTBSHHHHHHHHHHHHH T ss_pred cCCCCCCHHHHHHHHHHHHH Confidence 99999999999998877654
##### No 191 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2KSQ_A ADP-ribosylation factor 1; ARF, myristoylated, myristoyl, GTP, bicelle; HET: GTP, MYR, MTN; NMR {Saccharomyces cerevisiae} Probab=99.69 E-value=6e-21 Score=128.60 Aligned_cols=166 Identities=16% Similarity=0.187 Sum_probs=109.2 Template_Neff=11.300 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ......+|+++|++++|||||++++......... ++.. ............+.+||++|++.+...+..++..++++ T Consensus 13 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~i 88 (181) T 2KSQ_A 13 FGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTI-PTIG---FNVECVQYCNISFTVWDVGGQDRIRSLWRHYYCNTEGV 88 (181) T ss_dssp GTTTEEEEEEEECTTTCHHHHHHHHHHSSCCCCC-CCSS---EECCEEEETTEEEEEEEECCSHHHHGGGGGSCSCCSEE T ss_pred cCCCCeEEEEEcCCCCChHHHHHHhhcCCCCccc-Cccc---EEEEEEEECCEEEEEEEcCCChHHHHHHHHHhcCCCEE Confidence 3567789999999999999999999876553221 1111 11111122345789999999888877888888899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) ++|+|+.+..++......+....... ....|+++|+||+|+........ .... ..... .....+.++.+ T Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~~-~~~~--------~~~~~-~~~~~~~~~~~ 158 (181) T 2KSQ_A 89 IFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPEAMSAAE-ITEK--------LGLHS-IRNRPWFIQAT 158 (181) T ss_dssp EEEEESSCTTTHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHH-HHHH--------TTTTT-CCSSCEEEEEC T ss_pred EEEEECCChHhHHHHHHHHHHHhcChhhcCCeEEEEEeCCCCccCCCHHH-HHHH--------hCcHH-hcCCCcEEEEe Confidence 99999988766555544444333221 23689999999999976321111 0000 00000 01112467789 Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184) |++++.|+.++|.++.+.+.+ T Consensus 159 s~~~~~gi~~~~~~l~~~~~~ 179 (181) T 2KSQ_A 159 CATSGEGLYEGLEWLSNCLKN 179 (181) T ss_dssp BTTTTBTHHHHHHHHHHHHTT T ss_pred eCCCCCCHHHHHHHHHHHHhc Confidence 999999999999998877643
##### No 192 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1R8S_A ADP-ribosylation factor 1/Cytohesin 2; PROTEIN TRANSPORT/EXCHANGE FACTOR, PROTEIN TRANSPORT-EXCHANGE; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 Probab=99.69 E-value=6.3e-21 Score=126.22 Aligned_cols=161 Identities=17% Similarity=0.267 Sum_probs=106.0 Template_Neff=11.700 Q sequence1 9 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFS 88 (184) Q Consensus 9 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (184) ++|+++|.+++|||||++++....+.... ++.. ............+.+||++|...+...+..++..++++++|++ T Consensus 1 ~~i~~~G~~~~GKssl~~~l~~~~~~~~~-~~~~---~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 76 (164) T 1R8S_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG---FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164) T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCC-CCSS---CCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE T ss_pred CeEEEECCCCCCHHHHHHHhccCCCcccc-Ceee---EEEEEEEECCEEEEEEEeCCCcchHHHHHHHhccCCEEEEEEe Confidence 47999999999999999999766543221 1111 1111222345678999999988887788888889999999999 Q sequence1 89 IDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 167 (184) Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 167 (184) ++++.++......+....... ....|+++++||+|+........ ... ......... ..+.++.+|++++ T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nk~D~~~~~~~~~-~~~--------~~~~~~~~~-~~~~~~~~s~~~~ 146 (164) T 1R8S_A 77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE-ITD--------KLGLHSLRH-RNWYIQATCATSG 146 (164) T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH-HHH--------HTTGGGCSS-CCEEEEECBTTTT T ss_pred CCCHHHHHHHHHHHHHHHhcchhcCCEEEEEEeCccCCCCCCHHH-HHH--------HhCChhhCC-CceEEEEeeCCCC Confidence 988655555444444433322 23578999999999876432111 100 000001111 2357889999999 Q sequence1 168 DGVREVFEMATRAALQ 183 (184) Q Consensus 168 ~~i~~~~~~~~~~~~~ 183 (184) .|+.+++.++.+.+.+ T Consensus 147 ~~i~~~~~~l~~~~~~ 162 (164) T 1R8S_A 147 DGLYEGLDWLSNQLRN 162 (164) T ss_dssp BTHHHHHHHHHHHC-- T ss_pred CcHHHHHHHHHHHHhc Confidence 9999999999887654
##### No 193 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5YMX_A Mutual gliding-motility protein MglA (E.C.3.6.5.2); Small Ras-like GTPase, Cytosolic, Myxococcus; HET: GDP, IMD, MPD, EDO; 1.35A {Myxococcus xanthus (strain DK 1622)} Probab=99.69 E-value=6.9e-21 Score=129.93 Aligned_cols=163 Identities=26% Similarity=0.304 Sum_probs=106.4 Template_Neff=12.000 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV----------YVPTVFENYV-ADI-EVDGKQVELALWDTAGLEDYDRL 72 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~----------~~~t~~~~~~-~~~-~~~~~~~~~~i~D~~g~~~~~~~ 72 (184) .....+|+++|..++|||+|++++........ ..++...... ... ...+....+.+||++|++.+... T Consensus 9 ~~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 88 (203) T 5YMX_A 9 REINCKIVYYGPGLCGKTTNLQYIYNKTAAETKGKLISLSTETDRTLFFDFLPLSLGEIRGFKTRFHLYTVPGQVFYDAS 88 (203) T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCTTCCCBTTBEEEEEEEECCSCCSCHHH T ss_pred CceeEEEEEEcCCCCCHHHHHHHHHhhcccccccceeeccCCCcceeEeeEEeeEEeccCCeEEEEEEEeCCCCCcchHh Confidence 45678999999999999999999887654321 1111111110 001 11123567889999998888888 Q sequence1 73 RPLSYPDTDVILMCFSID------SPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEE 146 (184) Q Consensus 73 ~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 146 (184) +..++..+|++++|+|.+ ...++..... +...+.......|+++++||.|+..... ..+ T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~piivv~~k~D~~~~~~--------------~~~ 153 (203) T 5YMX_A 89 RKLILKGVDGVVFVADSQIERMEANMESLENLRI-NLAEQGYDLNKIPYVIQYNKRDLPNAVT--------------VEE 153 (203) T ss_dssp HHHHTTTCSEEEEEEECBGGGHHHHHHHHHHHHH-HHHHTTCCGGGSCEEEEEECTTSTTBBC--------------HHH T ss_pred HHHHhcCCCEEEEEEeCCcchhHHhHHHHHHHHH-HHHHccccCCCCCEEEEEeCCCCCCCCC--------------HHH Confidence 888888999999999998 4444443322 2222222224689999999999865211 011 Q sequence1 147 GRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 147 ~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) ...+....+ +.++.+|+.++.++.++|.++.+.+++ T Consensus 154 ~~~~~~~~~-~~~~~~S~~~~~~i~~~~~~l~~~i~~ 189 (203) T 5YMX_A 154 MRKALNHRN-IPEYQAVAPTGVGVFDTLKAVAKLVLT 189 (203) T ss_dssp HHHHHCSSC-CCEEECBGGGTBTHHHHHHHHHHHHHH T ss_pred HHHHHhhCC-CCEEEeeccCCCCHHHHHHHHHHHHHH Confidence 111222222 578899999999999999999887754
##### No 194 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4ZI2_A Arl3 (E.C.3.6.5.2.), CCDC104/BARTL1; Complex, Arf-like GTPase, GTP-binding, BART-like; HET: GNP; 2.2A {Mus musculus} Probab=99.69 E-value=7.1e-21 Score=129.32 Aligned_cols=164 Identities=18% Similarity=0.280 Sum_probs=109.1 Template_Neff=11.100 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) .....+|+++|..|+|||||++++........ .++... ...........+.+||++|...+...+..++..+++++ T Consensus 14 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~vi 89 (190) T 4ZI2_A 14 PDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGF---NIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILI 89 (190) T ss_dssp GGGEEEEEEEECTTSSHHHHHHHHTTCCCTTC-CCCSSE---EEEEEEETTEEEEEEEECCSTTTGGGGGGGTTTCSEEE T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCCcC-CCeeeE---EEEEEcCceEEEEEEeCCCCHHHHHHHHHHcCCCCEEE Confidence 45678999999999999999999986643321 111111 11112233467899999998877777888888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) +|+|.++..++......+........ ...|+++++||+|+..........+. ... .. .......++.+| T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~-----~~~----~~-~~~~~~~~~~~S 159 (190) T 4ZI2_A 90 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEG-----LNL----HT-IRDRVWQIQSCS 159 (190) T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHH-----TTG----GG-CCSSCEEEEECC T ss_pred EEEECCChHhHHHHHHHHHHHHHhCCCCCCcEEEEEECcccCChHHHHHHHHH-----hCH----HH-HHcCCceEEEcc Confidence 99999987766665555544443221 35789999999998754321110000 000 00 001124678899 Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184) ++++.|+.++|.++.+.+. T Consensus 160 a~~~~~i~~~~~~l~~~~~ 178 (190) T 4ZI2_A 160 ALTGEGVQDGMNWVCKNVN 178 (190) T ss_dssp TTTCTTHHHHHHHHHHTTT T ss_pred CCCCCCHHHHHHHHHHHHH Confidence 9999999999999988764
##### No 195 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5DE3_A ARF-like GTPase; G-protein, ADP ribosylation factor like; HET: GNP; 1.417A {Chlamydomonas reinhardtii} Probab=99.68 E-value=8.6e-21 Score=126.16 Aligned_cols=160 Identities=19% Similarity=0.284 Sum_probs=107.1 Template_Neff=11.700 Q sequence1 9 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFS 88 (184) Q Consensus 9 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (184) .||+++|+.++|||||++++........... ..............+.+||++|.+.+...+..++.+++++++|+| T Consensus 1 ~ki~~~G~~~~GKs~l~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i~~v~d 76 (169) T 5DE3_A 1 ARILVLGLDNAGKTTILKALSEEDITTITPT----QGFNIKSLSRDGFNLKIWDIGGQKSIRPYWRNYFDQTDALIYVID 76 (169) T ss_dssp CEEEEECCTTSSHHHHHHHHTTCCCTTCCCC----SSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCCEEEEEEE T ss_pred CeEEEECCCCCChHHHHHHHccCCCCCCCCc----cceEEEEEEeCCEEEEEEECCCCcchHHHHHHHhccCCEEEEEEE Confidence 4799999999999999999987654322111 001111122334678999999988888888888899999999999 Q sequence1 89 IDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 167 (184) Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 167 (184) +.+..++......+....... ....|+++++||.|+...... ........ .... ......++.+|++++ T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~~k~D~~~~~~~-~~~~~~~~--------~~~~-~~~~~~~~~~s~~~~ 146 (169) T 5DE3_A 77 SADSKRLSESEFELTELLQEEKMTGVPLLVFANKQDLVGALAA-DEIASTLD--------LTSI-RDRPWQIQACSAKQG 146 (169) T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH-HHHHHHTT--------GGGC-CSSCEEEEECCTTTC T ss_pred CCChhhHHHHHHHHHHHHhchhcCCCCEEEEEECCCCCCCCCH-HHHHHhcC--------chhh-CCCceEEEEccCCCC Confidence 988766665544444443322 236899999999999774211 11111000 0000 112257888999999 Q sequence1 168 DGVREVFEMATRAAL 182 (184) Q Consensus 168 ~~i~~~~~~~~~~~~ 182 (184) .|+.+++.++.+.+. T Consensus 147 ~~v~~~~~~l~~~~~ 161 (169) T 5DE3_A 147 TGLKEGMEWMMKQVK 161 (169) T ss_dssp TTHHHHHHHHHHHHS T ss_pred cCHHHHHHHHHHHHh Confidence 999999999988765
##### No 196 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3Q7Q_A GTP-binding protein RAD; G-domain, G-protein, Cav2 beta, SIGNALING; HET: GNP; 2.3A {Homo sapiens} Probab=99.68 E-value=9.1e-21 Score=125.31 Aligned_cols=162 Identities=25% Similarity=0.293 Sum_probs=95.4 Template_Neff=12.100 Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 87 (184) Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (184) .++|+++|.+++|||+|++++..........+ ............+....+.+||++|.......+..+...++++++|+ T Consensus 2 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~ 80 (166) T 3Q7Q_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEA-AGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166) T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSSCC--------CEEEEEEEETTEEEEEEEECTTC-------------CCSEEEEEE T ss_pred ceEEEEECCCCCCHHHHHHHhcCCCCCCcccc-CCceeeEEEEECCceEEEEEEEeCCCCCCcccchhhhhcCCEEEEEE Confidence 57899999999999999999886543322111 11111122223334457889999998777666777777899999999 Q sequence1 88 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 166 (184) Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 166 (184) ++.+..++....+.+....... ....|+++++||+|+....... ......++...+ ..++++|+.+ T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~nk~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s~~~ 147 (166) T 3Q7Q_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVS------------VDEGRACAVVFD-CKFIETSAAL 147 (166) T ss_dssp ETTCHHHHHHHHHHHHHHHTTCCSSCCCEEEEEECTTCCSSCCSC------------HHHHHHHHHHTT-CEEEECBTTT T ss_pred ECCchHHHHHHHHHHHHHHHhcCCCCCCEEEEEehHHccCCeeeC------------HHHHHHHHHHhC-CeEEEEeccc Confidence 9998666555433333222211 2368999999999987642110 011111112222 5688999999 Q sequence1 167 KDGVREVFEMATRAALQ 183 (184) Q Consensus 167 ~~~i~~~~~~~~~~~~~ 183 (184) +.++.++|+++.+.+.+ T Consensus 148 ~~~i~~~~~~l~~~i~~ 164 (166) T 3Q7Q_A 148 HHNVQALFEGVVRQIRL 164 (166) T ss_dssp TBSHHHHHHHHHHHHHT T ss_pred CcCHHHHHHHHHHHHHh Confidence 99999999999887653
##### No 197 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1KSH_A arf-like protein 2, RETINAL ROD; small GTPase, small GTP-binding protein; HET: GDP; 1.8A {Mus musculus} SCOP: c.37.1.8 Probab=99.68 E-value=9.2e-21 Score=128.29 Aligned_cols=165 Identities=15% Similarity=0.213 Sum_probs=106.4 Template_Neff=11.200 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ......+|+++|+.++|||||++++.+...... .++.... ....+.....+.+||++|+..+...+..++..++++ T Consensus 14 ~~~~~~~i~ivG~~~~GKttl~~~l~~~~~~~~-~~~~~~~---~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~ 89 (186) T 1KSH_A 14 QKERELRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLGFN---IKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGL 89 (186) T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHTTCCCSSC-CCCSSEE---EEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEE T ss_pred ccCCCEEEEEECCCCCCHHHHHHHhcCCCCCCC-CCcCCeE---EEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEE Confidence 346678999999999999999999875543211 1111111 111222346789999999887777777788899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) ++++++++..++......+....... ....|+++++||.|+...... ....+... ...... ..++++++ T Consensus 90 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~-~~~~~~~~--------~~~~~~-~~~~~~~~ 159 (186) T 1KSH_A 90 IWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC-NAIQEALE--------LDSIRS-HHWRIQGC 159 (186) T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-HHHHHHTT--------GGGCCS-SCEEEEEC T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhHHhcCCEEEEEEECCCCCCCCCH-HHHHHHcc--------chhhhC-CcEEEEEe Confidence 99999998766655544444333221 235899999999998763211 11110000 000111 12568899 Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184) |++++.|+.+++.++.+.+. T Consensus 160 S~~~~~~i~~~~~~l~~~~~ 179 (186) T 1KSH_A 160 SAVTGEDLLPGIDWLLDDIS 179 (186) T ss_dssp CTTTCTTHHHHHHHHHHHHH T ss_pred eCCCCCCHHHHHHHHHHHHH Confidence 99999999999999887664
##### No 198 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5U4U_A MGC81300 protein; GTPase, pseudoGTPase, G domain, Rho; HET: MLI; 1.9A {Xenopus laevis} Probab=99.68 E-value=9.3e-21 Score=127.95 Aligned_cols=153 Identities=16% Similarity=0.207 Sum_probs=93.7 Template_Neff=9.600 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLE--DYDRLRPLSYPDT 80 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~--~~~~~~~~~~~~~ 80 (184) ......++|+++|..++||| +.++....+.. ...+..++..+.+.+||++|++ .+...... +..+ T Consensus 3 ~~~~~~~ki~vlG~~~vGKt--~~~~~~~~~~~----------~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~-~~~~ 69 (178) T 5U4U_A 3 DPNVDRINLVILGRDGLARE--LANEIRALCTN----------DDKYVIDGKMYELSLRPIEGNVRLPVNSFQTS-TFQP 69 (178) T ss_dssp CTTSCEEEEEEECTTTHHHH--HHHHHHHTSCT----------TSEEEETTEEEEEEEEEECSCTTSGGGCSCBT-TBCC T ss_pred CCCcceEEEEEECChhHHHH--HHHHHHHHhcC----------CceEEECCEEEEEEEEecCCCcCCCcccccCC-ccCC Confidence 34567899999999999999 22222222211 0112234556788999999987 34444444 6789 Q sequence1 81 DVILMCFSIDSPDSLENIPEKWTPEVKH-------FCPNVPIILV-GNKKD-LRNDEHTRRELAKMKQEPVKPEEGRDMA 151 (184) Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~-------~~~~~~~~vv-~nK~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (184) |++++|+| +..++..+..++...... .....|+++| +||+| +...... ........++ T Consensus 70 d~~i~vyd--~~~Sf~~i~~~~~~i~~~~~~~~~~~~~~~p~vlv~gnK~D~~~~~~~~-----------v~~~~~~~~a 136 (178) T 5U4U_A 70 HGCLCLYN--SKESLSYVVESIEKSRESSLGRKENHLINLPLTLILVNRRGDTSSETAH-----------SLIQHGQQVA 136 (178) T ss_dssp SEEEEEES--SHHHHHHHHHHHHHHC----------CCSSCEEEEECCC-------CHH-----------HHHHHHHHHH T ss_pred CEEEEEeC--CHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEEeeCCCCCChhhhH-----------HHHHHHHHHH Confidence 99999999 677888875555444332 1246788888 99999 6322111 1112222233 Q sequence1 152 NRIGAFGYMECSAKTK--------DGVREVFEMATRAAL 182 (184) Q Consensus 152 ~~~~~~~~~~~s~~~~--------~~i~~~~~~~~~~~~ 182 (184) ...+ ..++++||+++ .++.++|.++++.+. T Consensus 137 ~~~~-~~~~e~Sa~~~~~~~~~~~~~v~~~f~~l~~~~~ 174 (178) T 5U4U_A 137 SKLQ-CVFLDAASTGLGYGRNINEKQISLILRGLLESKR 174 (178) T ss_dssp HHHT-CEEEETTTCC----CCCCHHHHHHHHHHHHHHHH T ss_pred HHcC-CEEEEcCccCCCcccCCCHHHHHHHHHHHHHHHH Confidence 3333 57889999999 999999999887664
##### No 199 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5HZH_A Rac1 containing C450A mutant LOV2; Signaling protein, Photoswitch, Chimera; HET: FMN, GTP; 2.6A {Homo sapiens} Probab=99.68 E-value=9.4e-21 Score=137.92 Aligned_cols=127 Identities=59% Similarity=1.020 Sum_probs=87.1 Template_Neff=12.400 Q sequence1 57 ELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAK 136 (184) Q Consensus 57 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~ 136 (184) .+.+||++|+..+...+..++..++++++++|+++..++......|...+.......|+++|+||+|+............ T Consensus 204 ~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~ 283 (332) T 5HZH_A 204 NLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKE 283 (332) T ss_dssp EEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHCCCCCHHHHHHHCTTCCEEEEEECGGGTTCHHHHHHHHT T ss_pred EEEEECCCCchhhhccCcccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEecccccCCHHHHHHHHH Confidence 45578999987776666666678899999999999877777654555555444356999999999999865432222111 Q sequence1 137 MKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) .....+.......++.....+.++++||.++.|+..+|.++.+.++. T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 330 (332) T 5HZH_A 284 KKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332) T ss_dssp TTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC T ss_pred cCCCCCCHHHHHHHHHHhCCCEEEEcccCCCCCHHHHHHHHHHHhhC Confidence 11111222223333444444679999999999999999999988764
##### No 200 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3BC1_E Ras-related protein Rab-27A (E.C.3.6.5.2), Synaptotagmin-like; Rab27, GTPase, Rab, signaling protein; HET: GNP; 1.8A {Mus musculus} Probab=99.68 E-value=9.8e-21 Score=128.69 Aligned_cols=165 Identities=28% Similarity=0.459 Sum_probs=106.8 Template_Neff=11.700 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIE----------VDGKQVELALWDTAGLEDYDRLR 73 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~-~~~----------~~~~~~~~~i~D~~g~~~~~~~~ 73 (184) ....++|+++|.+++|||+|++++..........++....... ... .......+.+||++|++++...+ T Consensus 8 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 87 (195) T 3BC1_E 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195) T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH T ss_pred cceeEEEEEECCCCCCHHHHHHHHhCCCCCCCCceeeeEEEEEEEEEEecCCCCCCCCCCcEEEEEEEECCCCHHHHHhc Confidence 3557899999999999999999998665433222211111100 000 01234578999999998888778 Q sequence1 74 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN 152 (184) Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184) ..+...++++++|+++.+..++......+....... ....|+++++||.|........ ......++. T Consensus 88 ~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ivv~~k~D~~~~~~~~------------~~~~~~~~~ 155 (195) T 3BC1_E 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVK------------EEEARELAE 155 (195) T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSC------------HHHHHHHHH T ss_pred HHHHccCCEEEEEeeCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEeCccchhhcCCC------------HHHHHHHHH Confidence 888889999999999987655555433232222211 1357899999999987532110 011111222 Q sequence1 153 RIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 153 ~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ..+ ..++++|+.++.++.++|.++.+.+. T Consensus 156 ~~~-~~~~~~S~~~~~~i~~~~~~l~~~~~ 184 (195) T 3BC1_E 156 KYG-IPYFETSAANGTNISHAIEMLLDLIM 184 (195) T ss_dssp HHT-CCEEECCTTTCTTHHHHHHHHHHHHH T ss_pred HhC-CCEEEeeCCCCCCHHHHHHHHHHHHH Confidence 222 56889999999999999988887653
##### No 201 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3BH7_A ADP-ribosylation factor-like protein 3, Protein; Protein-Protein complex, GTPase Activating protein; HET: GDP; 1.9A {Mus musculus} SCOP: c.37.1.8 Probab=99.68 E-value=1e-20 Score=124.64 Aligned_cols=161 Identities=19% Similarity=0.287 Sum_probs=105.7 Template_Neff=12.300 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) ...++|+++|++|+|||||++++......... ++.. ............+.+||++|.+.+...+..++..++++++ T Consensus 2 ~~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~-~~~~---~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 77 (164) T 3BH7_A 2 GSEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQG---FNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIY 77 (164) T ss_dssp --CEEEEEEESTTSSHHHHHHHHTTCCCSCCC-CCSS---EEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCCEEEE T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCCCccC-Ccce---EEEEEEcCCceEEEEEeCCCCHHHHHHHHHHhcCCCEEEE Confidence 45689999999999999999999876543211 1111 1111122345678899999988887778888889999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) |+|+++..++......+....... ....|+++++||.|+............ .. . .........++.+|+ T Consensus 78 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~k~D~~~~~~~~~~~~~-~~----~-----~~~~~~~~~~~~~S~ 147 (164) T 3BH7_A 78 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEG-LN----L-----HTIRDRVWQIQSCSA 147 (164) T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHH-TT----G-----GGCCSSCEEEEECCT T ss_pred EEeCCChHhHHHHHHHHHHHHHhCCCCCCCEEEEEEchhcCChHhHHHHHHH-cC----h-----HHHhcCCceEEEeeC Confidence 999998766655544444443322 235789999999999764321111000 00 0 000011256888999 Q sequence1 165 KTKDGVREVFEMATRA 180 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~ 180 (184) .++.|+.+++.++.+. T Consensus 148 ~~~~~i~~~~~~l~~~ 163 (164) T 3BH7_A 148 LTGEGVQDGMNWVCKN 163 (164) T ss_dssp TTCTTHHHHHHHHHHT T ss_pred CCCCCHHHHHHHHHhh Confidence 9999999999988765
##### No 202 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2FH5_B Signal recognition particle receptor alpha; Endomembrane targeting, GTPase, GAP, longin; HET: GTP; 2.45A {Homo sapiens} SCOP: c.37.1.8 Probab=99.68 E-value=1.2e-20 Score=130.52 Aligned_cols=176 Identities=14% Similarity=0.202 Sum_probs=100.2 Template_Neff=11.100 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR-LRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~ 82 (184) .+....+|+++|.+++|||||++++....+.....+........... ......+.+||++|+..+.. .+..++..+|+ T Consensus 3 ~~~~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ 81 (214) T 2FH5_B 3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214) T ss_dssp -----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEE T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHhCCCCCCeeecccceeeEEee-CCCCceEEEEECCCChHHHHHHHHHHhhhCCE Confidence 35667899999999999999999998765543221111111111111 12346789999999887765 67777788999 Q sequence1 83 ILMCFSIDSPDS-LENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDEHTRRELAKMKQEP--VKP------------ 144 (184) Q Consensus 83 ~i~v~d~~~~~s-~~~~~~~~~~~~~~~---~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~--~~~------------ 144 (184) +++|+|+.+..+ +......+....... ....|+++++||.|+................. ... T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~~K~D~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 161 (214) T 2FH5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214) T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--------- T ss_pred EEEEEehhhhhHHHHHHHHHHHHHHHhHHhhcCCCeEEEEEECccccchhCHHHHHHHHHHHHHHHHHHhhcCCCcCCCC Confidence 999999987654 444433333332211 12678999999999976432211111111000 000 Q sequence1 145 ----------EEGRDMANRIGAFGYMECSAKTKDG------VREVFEMATRA 180 (184) Q Consensus 145 ----------~~~~~~~~~~~~~~~~~~s~~~~~~------i~~~~~~~~~~ 180 (184) .....++.......++++|++++.| +.++++|+.+. T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g~~~~~~~~~l~~~l~~~ 213 (214) T 2FH5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214) T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH T ss_pred CCCchhcCCCCCcccccCCCceEEEEEeEeecCCCCCCcccHHHHHHHHHhh Confidence 0000111112235689999999999 99999988654
##### No 203 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2HXS_A Ras-related protein Rab-28; GTPase, Ras, Rab, SIGNALING PROTEIN; HET: G3D; 1.1A {Homo sapiens} Probab=99.67 E-value=1.2e-20 Score=125.59 Aligned_cols=165 Identities=28% Similarity=0.405 Sum_probs=109.1 Template_Neff=12.500 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVD-GKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) ..+..+|+++|.+++|||+|++++....+.....++..... ....... +....+.+||++|...+...+..++..+|+ T Consensus 3 ~~~~~~i~~~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 82 (178) T 2HXS_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178) T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE T ss_pred CcceeEEEEECCCCCCHHHHHHHHhhcccCCCccceeEEEEEEEEEecCCCceEEEEEEeCCCccccchhhHHHhccCCE Confidence 45678999999999999999999986654433222221111 1112221 225678899999988777777788889999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFG 158 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184) +++|+|+++..++..... +...+... ....|+++++||.|........ ......++...+ +. T Consensus 83 ~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iv~~k~d~~~~~~~~------------~~~~~~~~~~~~-~~ 148 (178) T 2HXS_A 83 VLLVYDITNYQSFENLED-WYTVVKKVSEESETQPLVALVGNKIDLEHMRTIK------------PEKHLRFCQENG-FS 148 (178) T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSC------------HHHHHHHHHHHT-CE T ss_pred EEEEEeCCChHHHHhHHH-HHHHHHHHhccCCCCCEEEEEEechhhcccccCC------------HHHHHHHHHHcC-CC Confidence 999999998666555433 22222211 2367899999999986532110 111112222222 56 Q sequence1 159 YMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 159 ~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) ++.+|+.++.++.+++.++...+.+ T Consensus 149 ~~~~s~~~~~~i~~~~~~l~~~~~~ 173 (178) T 2HXS_A 149 SHFVSAKTGDSVFLCFQKVAAEILG 173 (178) T ss_dssp EEEECTTTCTTHHHHHHHHHHHHTT T ss_pred eEEEecCCCCCHHHHHHHHHHHHhc Confidence 7789999999999999998877653
##### No 204 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2F7S_A Ras-related protein Rab-27B; Rab27b, G-protein, Rab, Structural Genomics; HET: GDP; 2.7A {Homo sapiens} SCOP: c.37.1.8 Probab=99.67 E-value=1.4e-20 Score=129.93 Aligned_cols=167 Identities=28% Similarity=0.439 Sum_probs=108.8 Template_Neff=11.800 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVD----------GKQVELALWDTAGLEDYDR 71 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~----------~~~~~~~i~D~~g~~~~~~ 71 (184) +...+.++|+++|++++|||||++++..........++..... ....... .....+.+||++|.+.+.. T Consensus 20 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 99 (217) T 2F7S_A 20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS 99 (217) T ss_dssp -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH T ss_pred CCcceeEEEEEECCCCCCHHHHHHHHhCCCCCccccccceeeeeEeEEEEcCCCCCCCCCCceEEEEEEEeCCCChhhHH Confidence 3457789999999999999999999987654332222111111 1111111 1135778999999887777 Q sequence1 72 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 150 (184) Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184) .+..++..++++++|+|+.+..++......+....... ....|+++++||.|+....... ....... T Consensus 100 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ivv~~k~d~~~~~~~~------------~~~~~~~ 167 (217) T 2F7S_A 100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVN------------ERQAREL 167 (217) T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSC------------HHHHHHH T ss_pred hhHHHhccCCEEEEEEeCCChHHHHHHHHHHHHHHHhccCCCCeEEEEEeCccCCChhhCC------------HHHHHHH Confidence 77778889999999999988766655543333322221 2467899999999986532110 1111112 Q sequence1 151 ANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 151 ~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) +...+ +.++.+|+.++.++.+++.++.+.+. T Consensus 168 ~~~~~-~~~~~~s~~~~~~i~~~~~~l~~~~~ 198 (217) T 2F7S_A 168 ADKYG-IPYFETSAATGQNVEKAVETLLDLIM 198 (217) T ss_dssp HHHTT-CCEEEEBTTTTBTHHHHHHHHHHHHH T ss_pred HHHhC-CCEEEEeCCCCCCHHHHHHHHHHHHH Confidence 22222 57889999999999999998887764
##### No 205 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3Q72_A GTP-binding protein RAD; G-domain, G-protein, Cav2 beta, SIGNALING; HET: GNP; 1.655A {Homo sapiens} Probab=99.67 E-value=1.4e-20 Score=124.14 Aligned_cols=162 Identities=25% Similarity=0.294 Sum_probs=91.4 Template_Neff=12.400 Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 87 (184) Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (184) .++|+++|.+++|||||++++..........+. ...........+....+.+||++|.......+..+...++++++|+ T Consensus 2 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~ 80 (166) T 3Q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166) T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE T ss_pred ceEEEEeCCCCCCHHHHHHHhCCCCCCCccccC-CceeEEEEEECCeeEEEEEEEecCCCCCccccccccccCCEEEEEE Confidence 578999999999999999998865433221111 1111112223334457789999998777666666777899999999 Q sequence1 88 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 166 (184) Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 166 (184) |+.+..++......+....... ....|+++++||.|+........ ..........+ +.++.+|+++ T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vivv~nk~D~~~~~~~~~------------~~~~~~~~~~~-~~~~~~s~~~ 147 (166) T 3Q72_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSV------------DEGRACAVVFD-CKFIETSAAL 147 (166) T ss_dssp ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCH------------HHHHHHHHHTT-CEEEECBGGG T ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCCCEEEEeechHcCCccccCH------------HHHHHHHHHhC-CeEEEEEccc Confidence 9998766655433333322211 23689999999999986422110 01111111222 5688899999 Q sequence1 167 KDGVREVFEMATRAALQ 183 (184) Q Consensus 167 ~~~i~~~~~~~~~~~~~ 183 (184) +.++.++|.++.+.+.+ T Consensus 148 ~~~~~~~~~~l~~~~~~ 164 (166) T 3Q72_A 148 HHNVQALFEGVVRQIRL 164 (166) T ss_dssp TBSHHHHHHHHHHHHHH T ss_pred CcCHHHHHHHHHHHHHh Confidence 99999999999887654
##### No 206 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3Q7Q_B GTP-binding protein RAD; G-domain, G-protein, Cav2 beta, SIGNALING; HET: GNP; 2.3A {Homo sapiens} Probab=99.67 E-value=1.4e-20 Score=124.14 Aligned_cols=162 Identities=25% Similarity=0.294 Sum_probs=93.1 Template_Neff=12.400 Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 87 (184) Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (184) .++|+++|.+++|||||++++..........+. ...........+....+.+||++|.......+..+...++++++|+ T Consensus 2 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~ 80 (166) T 3Q7Q_B 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166) T ss_dssp CEEEEEEESTTSSHHHHHHHHHCC----------CCEEEEEEEETTEEEEEEEECTTC-------------CCSEEEEEE T ss_pred ceEEEEeCCCCCCHHHHHHHhCCCCCCCccccC-CceeEEEEEECCeeEEEEEEEecCCCCCccccccccccCCEEEEEE Confidence 578999999999999999998865433221111 1111112223334457789999998777666666777899999999 Q sequence1 88 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 166 (184) Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 166 (184) |+.+..++......+....... ....|+++++||.|+........ ..........+ +.++.+|+++ T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vivv~nk~D~~~~~~~~~------------~~~~~~~~~~~-~~~~~~s~~~ 147 (166) T 3Q7Q_B 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSV------------DEGRACAVVFD-CKFIETSAAL 147 (166) T ss_dssp ETTCHHHHHHHHHHHHHHHTC----CCCEEEEEECTTCCSSCCSCH------------HHHHHHHHHTT-CEEEECBTTT T ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCCCEEEEeechHcCCccccCH------------HHHHHHHHHhC-CeEEEEEccc Confidence 9998766655433333322211 23689999999999986422110 01111111222 5688899999 Q sequence1 167 KDGVREVFEMATRAALQ 183 (184) Q Consensus 167 ~~~i~~~~~~~~~~~~~ 183 (184) +.++.++|.++.+.+.+ T Consensus 148 ~~~~~~~~~~l~~~~~~ 164 (166) T 3Q7Q_B 148 HHNVQALFEGVVRQIRL 164 (166) T ss_dssp TBSHHHHHHHHHHHHHH T ss_pred CcCHHHHHHHHHHHHHh Confidence 99999999999887654
##### No 207 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5C1T_B Small GTPase EhRabX3; P-loop containing nucleotide triphosphate hydrolases; HET: GTP; 2.801A {Entamoeba histolytica} Probab=99.67 E-value=1.4e-20 Score=141.39 Aligned_cols=161 Identities=19% Similarity=0.318 Sum_probs=108.7 Template_Neff=10.600 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) ....+++++|.+++|||++++++............ ..............+.+||+||++.+......++..+|++++ T Consensus 220 ~~~~~i~~~g~~~~gKs~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~i~i~D~pG~~~~~~~~~~~~~~~d~~l~ 296 (391) T 5C1T_B 220 DIKIRMLMVGDQNVGKTTFIRKFALQDPTGHDFMN---AITTRFEMEKIKYEIIMIDWGFYNKLLQTNPAISRTIEAILI 296 (391) T ss_dssp CEEEEEEECCSCSSSSTTTGGGGCCCCC---CCCC---CCEEEEECSSSEEEEEECCSHHHHHHHHHCTTHHHHCCEEEE T ss_pred ccceeEEEeCCCCCChHHHHHHHhcCCCCCcccce---eeEEEEEecceEEEEEEEecchhHhHHhhchhhcCCCcEEEE Confidence 45679999999999999999999866432111110 011111222234578899999998887777778889999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184) |+|+++..++......|...+....+..|+++|+||+|+....... ..+...++...+ ..++++||+ T Consensus 297 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~nK~Dl~~~~~~~------------~~~~~~~~~~~~-~~~~~~Sa~ 363 (391) T 5C1T_B 297 VYDITNEESFQNIHRKYYPLINNKFSDVAGVIVGYKTDLEAQRKIT------------MGDALTLADWLG-YKYVEMSSK 363 (391) T ss_dssp ECCTTCCCSSSTHHHHHC-CTTCCEEECCCSSCC-CCTHHHHHSSS------------CCC-CCCTTCST-TTCGGGHHH T ss_pred EEECCChHhHHHHHHHHHHHHHhhCCCCeEEEEEechHHhhcCCCC------------HHHHHHHHHHHC-CEEEEecCC Confidence 9999987777766555555554433568999999999997632210 111122233333 568999999 Q sequence1 166 TKDGVREVFEMATRAAL 182 (184) Q Consensus 166 ~~~~i~~~~~~~~~~~~ 182 (184) +++|+.++|.++.+.+. T Consensus 364 ~~~~i~~l~~~l~~~~~ 380 (391) T 5C1T_B 364 DTEDHSSIIKALAHSIR 380 (391) T ss_dssp HHHHHHHHHTTTTTTCC T ss_pred CCCCHHHHHHHHHHHHH Confidence 99999999998877654
##### No 208 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1M2O_B protein transport protein SEC23/GTP-binding protein; zinc-finger, beta barrel, vWA domain; HET: GNP; 2.5A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Probab=99.67 E-value=1.5e-20 Score=127.64 Aligned_cols=169 Identities=18% Similarity=0.269 Sum_probs=103.5 Template_Neff=11.300 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) .....+|+++|++++|||||++++........... . .............+.+||+||+..+...+..++..+++++ T Consensus 20 ~~~~~~i~~vG~~~~GKstli~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii 95 (190) T 1M2O_B 20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPT-W---HPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190) T ss_dssp ----CEEEEEESTTSSHHHHHHHHHHSCCCCCCCC-C---SCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEE T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhcCCcCCCCCC-C---CCceeEeeeCCEEEEEEecCCCHHHHHHHHHHCccCCEEE Confidence 34678999999999999999999987654321110 0 0001112223467899999998877777777888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) +|+|+++..++......+....... ....|+++++||.|+...... ......... ........+... ....++.+| T Consensus 96 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~nK~D~~~~~~~-~~~~~~l~~-~~~~~~~~~~~~-~~~~~~~~s 172 (190) T 1M2O_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSE-AELRSALGL-LNTTGSQRIEGQ-RPVEVFMCS 172 (190) T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH-HHHHHHTTC-SSCCC---CCSS-CCEEEEECB T ss_pred EEEECCChhhHHHHHHHHHHHHccccccCCCEEEEEECCCCCCCCCH-HHHHHHhch-hhccCCCCCCCC-ccEEEEEee Confidence 9999988765555433333332221 136899999999999653211 111110000 000000011111 225788999 Q sequence1 164 AKTKDGVREVFEMATRA 180 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~ 180 (184) +.++.|+.+++.++.+. T Consensus 173 a~~~~~i~~~~~~l~~~ 189 (190) T 1M2O_B 173 VVMRNGYLEAFQWLSQY 189 (190) T ss_dssp TTTTBSHHHHHHHHHTT T ss_pred cccccCHHHHHHHHHhh Confidence 99999999999988764
##### No 209 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4V0K_B ARF-LIKE SMALL GTPASE; HYDROLASE; HET: GDP, CD; 1.438A {CHLAMYDOMONAS REINHARDTII} Probab=99.67 E-value=1.5e-20 Score=124.86 Aligned_cols=164 Identities=19% Similarity=0.226 Sum_probs=104.9 Template_Neff=11.800 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) .....+|+++|..++|||||++++........ ..++... ...........+.+||++|...+...+..++..+|++ T Consensus 3 ~~~~~~i~l~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~i 79 (169) T 4V0K_B 3 ASKKVNVLVVGLDNSGKTTIIERLKPRPRQAAEVAPTVGF---TVDEVEKGPLTFTVFDMSGAGRYRTLWEQYYREADAV 79 (169) T ss_dssp ---CEEEEEECSTTSSHHHHHHHHSCCCCCCSCCCCCCSS---CCEEEEETTEEEEECCCCSGGGTHHHHHTTSTTCSEE T ss_pred CccceEEEEEcCCCCCchHHHHHHcCCCccCCCCCCccce---EEEEEEeCCEEEEEEEcCCChhhHHHHHHHHhhCCEE Confidence 45679999999999999999999986543221 1111111 1111223356789999999888877888888899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) ++|++.++...+......+....... ....|+++++||.|+............ ........ ....++++ T Consensus 80 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nk~d~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~ 149 (169) T 4V0K_B 80 VFVVDSADKLRMVVARDEMEHMLKHSNMRKVPILYFANKKDLPVAMPPVEIAQA---------LGLDDIKD-RPWQIVPS 149 (169) T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCTTCCSCCEEEEEECTTSTTCCCHHHHHHH---------HTGGGCCS-SCEEEEEC T ss_pred EEEEECCCcccHHHHHHHHHHHHhcccccCCCEEEEEECCCCCCCCCHHHHHHH---------cCChhhCC-CCeEEEEC Confidence 99999998765554443333332221 135899999999998653211110000 00000011 12468899 Q sequence1 163 SAKTKDGVREVFEMATRAA 181 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~ 181 (184) |++++.|+.++++++...+ T Consensus 150 s~~~~~~i~~~~~~l~~~~ 168 (169) T 4V0K_B 150 NGLTGEGVDKGIDWLAERL 168 (169) T ss_dssp CTTTCTTHHHHHHHHHHHC T ss_pred CCCCCCcHHHHHHHHHHhc Confidence 9999999999999987654
##### No 210 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1FZQ_A ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 3; Protein-GDP complex without magnesium, ARF; HET: GDP, SO4, MES; 1.7A {Mus musculus} SCOP: c.37.1.8 Probab=99.67 E-value=1.7e-20 Score=125.66 Aligned_cols=165 Identities=19% Similarity=0.300 Sum_probs=107.4 Template_Neff=12.100 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) .....+|+++|+.++|||||++++........ .++.... ..........+.+||++|...+...+..++..+++++ T Consensus 13 ~~~~~~i~~~G~~~~GKss~~~~l~~~~~~~~-~~~~~~~---~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 88 (181) T 1FZQ_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFN---IKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181) T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-EEETTEE---EEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEE T ss_pred CCCceEEEEEcCCCCCHHHHHHHHccCCCCcC-CCCcceE---EEEEEeCCEEEEEEECCCCcchHHHHHHHhcCCCEEE Confidence 35568999999999999999999987654321 1111111 1112233467889999998877777777888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) +++|+++..++......+....... ....|+++++||.|+........ ..+. .. ..........++++| T Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~k~D~~~~~~~~~-~~~~----~~-----~~~~~~~~~~~~~~S 158 (181) T 1FZQ_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASE-IAEG----LN-----LHTIRDRVWQIQSCS 158 (181) T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHH-HHHH----TT-----GGGCCSSCEEEEECC T ss_pred EEEeCCCcccHHHHHHHHHHHHhcccccCCCEEEEEeCcCcCCCCCHHH-HHHH----cC-----hHHhcCCeEEEEECc Confidence 9999987766655544444433322 23579999999999976432111 1000 00 000011124688899 Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184) +.++.|+.+++.++.+.+.+ T Consensus 159 ~~~~~~i~~~~~~i~~~~~~ 178 (181) T 1FZQ_A 159 ALTGEGVQDGMNWVCKNVNA 178 (181) T ss_dssp TTTCTTHHHHHHHHHHTC-- T ss_pred CCCCCcHHHHHHHHHHHHHH Confidence 99999999999999887643
##### No 211 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4CYM_B RAS-RELATED PROTEIN RAB-32 (E.C.3.6.5.2), ANKYRIN; TRANSPORT PROTEIN, VARP, RAB-EFFECTOR, RAB; HET: GCP; 2.8A {HOMO SAPIENS} Probab=99.67 E-value=1.8e-20 Score=130.67 Aligned_cols=166 Identities=22% Similarity=0.370 Sum_probs=109.1 Template_Neff=11.600 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDG-KQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) ....++|+++|..++|||+|++++..........++..... .......+ ....+.+||++|...+...+..++..+|+ T Consensus 27 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 106 (230) T 4CYM_B 27 REHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGLERFGNMTRVYYKEAVG 106 (230) T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHCCCCSSCCCCCSEEEEEEEEECSSSCEEEEEEEEECGGGGGSSCHHHHHTTCCE T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCccccCCceeeeEEEEEEecCCCCeEEEEEEeCCCCchhhchhHHHhccCCE Confidence 35678999999999999999999987654332222211111 11111111 22578999999998887778878889999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFG 158 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184) +++|+++.+..++......+....... ....|+++|+||.|+...... .......++...+... T Consensus 107 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~~k~D~~~~~~~------------~~~~~~~~~~~~~~~~ 174 (230) T 4CYM_B 107 AFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLANKCDQNKDSSQ------------SPSQVDQFCKEHGFAG 174 (230) T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCBCTTSCBCCEEEEEECTTSCCSSCC------------CHHHHHHHHHHTTCCE T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEECCCCCCCCCC------------CHHHHHHHHHHcCCCe Confidence 999999998766655543332221111 236899999999998653211 0111122223333357 Q sequence1 159 YMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 159 ~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ++++|+.++.++.+++.++...+. T Consensus 175 ~~~~s~~~~~~i~~~~~~l~~~~~ 198 (230) T 4CYM_B 175 WFETSAKDNINIEEAARFLVEKIL 198 (230) T ss_dssp EEEEBTTTTBSHHHHHHHHHHHHH T ss_pred EEEccCCCCCCHHHHHHHHHHHHH Confidence 889999999999999999888764
##### No 212 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6FUF_B Rhodopsin, Guanine nucleotide-binding protein G(o); GPCR Complex Rhodopsin, SIGNALING PROTEIN; HET: RET, NAG; 3.117A {Bos taurus} Probab=99.67 E-value=1.8e-20 Score=128.80 Aligned_cols=179 Identities=15% Similarity=0.174 Sum_probs=104.7 Template_Neff=12.100 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ....++++++|++++|||+|++++..........+..... .............+.+||++|.+.+...+..++..++++ T Consensus 13 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 92 (214) T 6FUF_B 13 AAKDVKLLLLGADNSGKSTIVKQMKIIHEDGFSGRTRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAI 92 (214) T ss_dssp ---CEEEEEESCTTSSHHHHTTCC------------------CEEECCEETTEEEEEEECCCSSTTTTTTGGGCCSCCEE T ss_pred hcceeeEEEEcCCCCChHHHHHHHHHHcCCCccceeeecccceEEEEEEECCEEEEEEecCCCccchHHHHHHccCCCEE Confidence 4567899999999999999999997644322111110000 111112223356889999999888777777788899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEP---VKPEEGRDMAN------- 152 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~------- 152 (184) ++|+|+.+..++......+........ ...|+++|+||.|+................. ........+.. T Consensus 93 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (214) T 6FUF_B 93 IFCVDLSDYNRMHESLMDFDSICNNKFFIDTSIILFLNKKDLFGEKIKKSPLTICFPEYTGPNTYEDAAAYIQAQFESKN 172 (214) T ss_dssp EEEEETTCSTTHHHHHHHHHHHHTCTTSSSSCEEEEEECHHHHHHHHHHSCGGGTCTTCCSCCCHHHHHHHHHHHHHHTC T ss_pred EEEeehHHhhhHHHHHHHHHHHHcChhhcCCeEEEEEeChhHhhHHhccCChhhcCCCCCCCCCHHHHHHHHHHHHHHhc Confidence 999999987666655445554443321 2688999999999987432100000000000 00000000000 Q sequence1 153 --RIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 153 --~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) ......++.+|++++.++.+++..+.+.+.+ T Consensus 173 ~~~~~~~~~~~~S~~~~~~i~~l~~~i~~~~~~ 205 (214) T 6FUF_B 173 RSPNKEIYCHMTCATDTNNAQVIFDAVTDIIIA 205 (214) T ss_dssp CCTTCCEEEEECCTTSSCCHHHHHHHHHHHHHH T ss_pred cCCCCeEEEEEEeeCChhHHHHHHHHHHHHHHH Confidence 0113568999999999999999998887654
##### No 213 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1Z06_A Ras-related protein Rab-33B; Rab GTPase, Rab33b GTPase, vesicular; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 Probab=99.67 E-value=1.9e-20 Score=126.24 Aligned_cols=167 Identities=25% Similarity=0.471 Sum_probs=104.4 Template_Neff=12.200 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYD-RLRPLSYPDTD 81 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~ 81 (184) ...+.++|+++|.+++|||+|++++..........+...... ............+.+||++|.+.+. ..+..+...+| T Consensus 16 ~~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~d 95 (189) T 1Z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189) T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCCcceEEEEEEEEeCCeEEEEEEEeCCCCHHHHHHHHHHHhccCC Confidence 456778999999999999999999987654332222111111 1122233345678999999987664 55666778899 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184) ++++|+|..+..++......+....... ....|+++++||.|+........ .....++...+ ..++ T Consensus 96 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~k~d~~~~~~~~~------------~~~~~~~~~~~-~~~~ 162 (189) T 1Z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPT------------DLAQKFADTHS-MPLF 162 (189) T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCH------------HHHHHHHHHTT-CCEE T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCCCccCCCH------------HHHHHHHHHcC-CCEE Confidence 9999999988766555543333332221 23678999999999876422110 11111222222 5788 Q sequence1 161 ECSAKT---KDGVREVFEMATRAALQ 183 (184) Q Consensus 161 ~~s~~~---~~~i~~~~~~~~~~~~~ 183 (184) ++|+++ +.++.+++.++...+.+ T Consensus 163 ~~s~~~~~~~~~v~~~~~~l~~~~~~ 188 (189) T 1Z06_A 163 ETSAKNPNDNDHVEAIFMTLAHKLKS 188 (189) T ss_dssp ECCSSSGGGGSCHHHHHHHHC----- T ss_pred EEeecCCCCCcCHHHHHHHHHHHHHc Confidence 999999 78999999998887754
##### No 214 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3CPH_A Rab GDP-dissociation inhibitor, Ras-related protein; Rab GTPase, prenylation, vesicular transport; HET: GDP; 2.9A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Probab=99.67 E-value=1.9e-20 Score=128.68 Aligned_cols=165 Identities=27% Similarity=0.538 Sum_probs=108.0 Template_Neff=12.000 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ....++|+++|..++|||+|++++..........++.... ....+........+.+||++|...+...+..++..+|++ T Consensus 17 ~~~~~~i~~~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~i 96 (213) T 3CPH_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213) T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE T ss_pred ccccEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCCcceEEEEEEECCEEEEEEEEeCCCChHhHHhHHHHHccCCEE Confidence 4667899999999999999999998665433222211111 111222233446789999999877777777778889999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|+|.....++......+...........|+++|+||.|........ .....++...+ ..++.+| T Consensus 97 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~k~d~~~~~~~~-------------~~~~~~~~~~~-~~~~~~s 162 (213) T 3CPH_A 97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTA-------------DQGEALAKELG-IPFIESS 162 (213) T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCH-------------HHHHHHHHHHT-CCEEECB T ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCCCEEEEEeCcccCCCCCCH-------------HHHHHHHHHhC-CCEEEcc Confidence 999999887666554333333333222457899999999986532111 11111222222 5688999 Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184) +.++.++.++|.++...+.+ T Consensus 163 ~~~~~~i~~~~~~l~~~~~~ 182 (213) T 3CPH_A 163 AKNDDNVNEIFFTLAKLIQE 182 (213) T ss_dssp TTTTBSSHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHH Confidence 99999999999998877643
##### No 215 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1R4A_B ADP-ribosylation factor-like protein 1/Golgi autoantigen; Ras-like G Protein structure, Three-helix; HET: GNP; 2.3A {Rattus norvegicus} SCOP: c.37.1.8 Probab=99.66 E-value=2.2e-20 Score=123.44 Aligned_cols=161 Identities=17% Similarity=0.227 Sum_probs=105.2 Template_Neff=12.000 Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 87 (184) Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (184) .++|+++|+.++|||+|++++......... ++.... . .........+.+||++|...+...+..+...++++++++ T Consensus 2 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~-~~~~~~-~--~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 77 (165) T 1R4A_B 2 EMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFN-V--ETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVV 77 (165) T ss_dssp CEEEEEEECTTSCHHHHHHHSSSCCCCCCC-CCSSEE-E--EEECSSSCCEEEEEECCSTTTGGGGGGGCTTCCEEEEEE T ss_pred CeeEEEEcCCCCCHHHHHHHhccCCCcCCC-CccceE-E--EEEEECCeEEEEEECCCCcccHHHHHHHccCCCEEEEEE Confidence 579999999999999999999765443211 111111 1 111224568899999998877777777788899999999 Q sequence1 88 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 166 (184) Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 166 (184) |+.++.++......+...+... ....|+++++||+|+............. . . .......+.++.+|+++ T Consensus 78 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~-------~--~-~~~~~~~~~~~~~s~~~ 147 (165) T 1R4A_B 78 DSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANAL-------G--L-PALKDRKWQIFKTSATK 147 (165) T ss_dssp ETTCGGGHHHHHHHHHHHHHCGGGTTCEEEEEEECTTSTTCCCHHHHHHHH-------T--G-GGCCSCCEEEEEEBTTT T ss_pred eCCChHhHHHHHHHHHHHHhcHhhhcCEEEEEEeCCCCCCCCCHHHHHHHh-------C--C-HHhcCCCeEEEECCCCC Confidence 9988765554433344333221 2357889999999997643211100000 0 0 00011235688999999 Q sequence1 167 KDGVREVFEMATRAAL 182 (184) Q Consensus 167 ~~~i~~~~~~~~~~~~ 182 (184) +.|+.+++.++...+. T Consensus 148 ~~~i~~~~~~i~~~i~ 163 (165) T 1R4A_B 148 GTGLDEAMEWLVETLK 163 (165) T ss_dssp TBSHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHhh Confidence 9999999999887654
##### No 216 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4BAS_A ADP-RIBOSYLATION FACTOR, PUTATIVE (SMALL GTPASE; HYDROLASE; HET: SO4, GNP; 2.0A {TRYPANOSOMA BRUCEI TREU927} Probab=99.66 E-value=2.5e-20 Score=126.70 Aligned_cols=169 Identities=16% Similarity=0.203 Sum_probs=107.2 Template_Neff=12.100 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ......+|+++|.+++|||+|++++............... ............+.+||++|++.....+..++..+|++ T Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 90 (199) T 4BAS_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG--YNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199) T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS--EEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEE T ss_pred CCCCcEEEEEECCCCCChhHHHhhhcccCCCCCCCcceee--eEEEEEeeCCEEEEEEEcCCChhhHHHHHHHhhcCCEE Confidence 3466789999999999999999999876544322111111 11112223456789999999888877888888899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFC--------PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIG 155 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184) ++|+|+++..++......+........ ...|+++++||.|+........... .......... . T Consensus 91 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~~k~D~~~~~~~~~~~~--------~~~~~~~~~~-~ 161 (199) T 4BAS_A 91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVE--------ILDLTTLMGD-H 161 (199) T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHH--------HHTHHHHHTT-S T ss_pred EEEEECCCchhHHHHHHHHHHHHhccchhhcCCCCCCCcEEEEEEchhhCCCCCHHHHHH--------HcchhhhhcC-C Confidence 999999886555554333333322211 1578999999999876422111000 0000111111 1 Q sequence1 156 AFGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 156 ~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) ...++.+|++++.++.++++++.+.+.+ T Consensus 162 ~~~~~~~s~~~~~~i~~~~~~l~~~~~~ 189 (199) T 4BAS_A 162 PFVIFASNGLKGTGVHEGFSWLQETASR 189 (199) T ss_dssp CEEEEECBTTTTBTHHHHHHHHHHHHHH T ss_pred CeEEEEeeeCCCCChHHHHHHHHHHHHH Confidence 2578899999999999999998887654
##### No 217 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3CLV_A Rab5 protein, putative; malaria, gtpase, Rab, structural genomics; HET: GDP; 1.89A {Plasmodium falciparum} Probab=99.66 E-value=2.6e-20 Score=127.87 Aligned_cols=165 Identities=24% Similarity=0.368 Sum_probs=107.4 Template_Neff=11.700 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA----------------------------------- 47 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~----------------------------------- 47 (184) |++.+..+|+++|++++|||||++++..........+........ T Consensus 2 ~~~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208) T 3CLV_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208) T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC---------------------------- T ss_pred CcccceEEEEEECCCCCCHHHHHHHHhCCCCCCCCccccceeeEEEEEEcchhcccccCcccccccccccccccceeeec Confidence 566778999999999999999999988654432211111000000 Q sequence1 48 ---DIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 124 (184) Q Consensus 48 ---~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~ 124 (184) ..........+.+||+||++.+...+..++..+|++++++|+.+..++......+..... ....|+++++||.|+ T Consensus 82 ~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~K~D~ 159 (208) T 3CLV_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKI--SSNYIIILVANKIDK 159 (208) T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH--HSCCEEEEEEECTTC T ss_pred ccccccCCceeEEEEEEeCCCcchhhceehheeCCCCEEEEEEeCCChhhHHHHHHHHHHhhc--cCCCEEEEEEECccc Confidence 000011245788999999988888888888899999999999876555554333333222 135789999999998 Q sequence1 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) ........ .....+... ...++.+|+.++.++.+++.++...+.+ T Consensus 160 ~~~~~~~~-------------~~~~~~~~~-~~~~~~~S~~~~~~~~~~~~~l~~~~~~ 204 (208) T 3CLV_A 160 NKFQVDIL-------------EVQKYAQDN-NLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208) T ss_dssp C-CCSCHH-------------HHHHHHHHT-TCEEEEECTTTCTTHHHHHHHHHHHHHH T ss_pred cCcccCHH-------------HHHHHHHHC-CCEEEEeEcccCCCHHHHHHHHHHHHHH Confidence 65321110 011111222 2568899999999999999998877653
##### No 218 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4DKX_A Ras-related protein Rab-6A; GTP binding fold, Membrane trafficking; HET: GDP; 1.9A {Homo sapiens} Probab=99.66 E-value=3e-20 Score=128.25 Aligned_cols=166 Identities=28% Similarity=0.420 Sum_probs=104.8 Template_Neff=11.700 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) ......+|+++|.+++|||+|++++..........++.... .............+.+||++|...+...+..++..+|+ T Consensus 9 ~~~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 88 (216) T 4DKX_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216) T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE T ss_pred CCcccEEEEEECCCCCCHHHHHHHHhhccCCcccCcccceeeEEEEEEECCEEEEEEEEeCCCcHHHHhhhHHHhcCCCE Confidence 34667899999999999999999988765433222221111 11122223345678999999988777777778889999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++|+++++...+......+...........|+++++||.|+....... .......+...+ ..++.+ T Consensus 89 vi~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~i~lv~nk~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~ 155 (216) T 4DKX_A 89 AVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVS------------IEEGERKAKELN-VMFIET 155 (216) T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSC------------HHHHHHHHHHHT-CEEEEE T ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHCCCCCEEEEEeeCCcccCCCccC------------HHHHHHHHHHhC-CcEEEE Confidence 9999999886655554333333332223467899999999987532110 000111122222 568899 Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184) |+.++.++.+++.++.+.+. T Consensus 156 s~~~~~~v~~l~~~l~~~l~ 175 (216) T 4DKX_A 156 SAKAGYNVKQLFRRVAAALP 175 (216) T ss_dssp BTTTTBSHHHHHHHHHHHC- T ss_pred eCCCCCCHHHHHHHHHHHhc Confidence 99999999999988877653
##### No 219 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2QTV_B Protein transport protein SEC23, Small; COPII coat, vesicular transport, Cytoplasmic; HET: GNP; 2.5A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Probab=99.65 E-value=3.1e-20 Score=122.87 Aligned_cols=164 Identities=19% Similarity=0.287 Sum_probs=101.5 Template_Neff=12.100 Q sequence1 9 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFS 88 (184) Q Consensus 9 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (184) ++|+++|++++|||+|++++............ ..... ........+.+||++|.+.+...+..++..+|++++|+| T Consensus 2 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 77 (167) T 2QTV_B 2 GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTW--HPTSE--ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD 77 (167) T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCCCCCCCC--SCEEE--EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCccCCCC--Cccee--EEeeCcEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEe Confidence 68999999999999999999876543211110 00000 111234568899999988777777788889999999999 Q sequence1 89 IDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 167 (184) Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 167 (184) +.+...+......+....... ....|+++++||.|+....... ...+..... ........... ....++.+|++++ T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~s~~~~ 154 (167) T 2QTV_B 78 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEA-ELRSALGLL-NTTGSQRIEGQ-RPVEVFMCSVVMR 154 (167) T ss_dssp TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHH-HHHHHHTCS-SCCC---CCSS-CCEEEEEEBTTTT T ss_pred CCChhhHHHHHHHHHHHHHHhcccCCCEEEEEeCCCCCCCCCHH-HHHHHHHHH-hhhCccccccC-CCeeEEEEecCCC Confidence 988665554433333332221 1368999999999986532211 111100000 00000001111 2267889999999 Q sequence1 168 DGVREVFEMATR 179 (184) Q Consensus 168 ~~i~~~~~~~~~ 179 (184) .|+.++++++.+ T Consensus 155 ~~i~~~~~~l~~ 166 (167) T 2QTV_B 155 NGYLEAFQWLSQ 166 (167) T ss_dssp BSHHHHHHHHTT T ss_pred cCHHHHHHHHhh Confidence 999999988764
##### No 220 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6GNI_B Protein transport protein SEC23, Protein; COPII coat, membrane trafficking, protein; HET: GNP; 4.9A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)} Probab=99.65 E-value=3.3e-20 Score=122.89 Aligned_cols=164 Identities=18% Similarity=0.278 Sum_probs=101.8 Template_Neff=12.000 Q sequence1 9 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFS 88 (184) Q Consensus 9 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (184) ++|+++|++++|||+|++++............ ..... ........+.+||++|...+...+..++..+|++++|+| T Consensus 2 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 77 (167) T 6GNI_B 2 GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTW--HPTSE--ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD 77 (167) T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCCCCCCCC--SCEEE--EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE T ss_pred CeEEEECCCCCCHHHHHHHHhcCcccCCCCCC--CCcee--EEEeCCEEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEE Confidence 68999999999999999999876543211110 00000 111234578899999988777778888889999999999 Q sequence1 89 IDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 167 (184) Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 167 (184) +.+...+......+....... ....|+++++||.|+............... . ........... ....++.+|++++ T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nk~D~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~-~~~~~~~~s~~~~ 154 (167) T 6GNI_B 78 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGL-L-NTTGSQRIEGQ-RPVEVFMCSVVMR 154 (167) T ss_dssp TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTC-S-SCCC---CCSS-CCEEEEEEBTTTT T ss_pred CCChHhHHHHHHHHHHHhcChhhcCCCEEEEEeCCCCCCCCCHHHHHHHHcH-h-hccCCCCCCCC-ceEEEEEeeCccc Confidence 988665554433333332221 136899999999998753221111110000 0 00000001111 2257889999999 Q sequence1 168 DGVREVFEMATR 179 (184) Q Consensus 168 ~~i~~~~~~~~~ 179 (184) .|+.++++++.+ T Consensus 155 ~~i~~~~~~l~~ 166 (167) T 6GNI_B 155 NGYLEAFQWLSQ 166 (167) T ss_dssp BSHHHHHHHHTT T ss_pred ccHHHHHHHHhc Confidence 999999998764
##### No 221 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1UPT_E ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 1, GOLGI; HYDROLASE/PROTEIN-BINDING, COMPLEX (GTPASE-GOLGIN), GOLGIN-245, GRIP; HET: GTP, MSE; 1.7A {HOMO SAPIENS} SCOP: c.37.1.8 Probab=99.65 E-value=4.1e-20 Score=123.14 Aligned_cols=165 Identities=18% Similarity=0.236 Sum_probs=108.0 Template_Neff=11.700 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) .....++|+++|+.++|||||++++......... ++.... .. ........+.+||++|.......+..++..++++ T Consensus 3 ~~~~~~~i~~~G~~~~GKstl~~~l~~~~~~~~~-~~~~~~-~~--~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~i 78 (171) T 1UPT_E 3 HMTREMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFN-VE--TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAV 78 (171) T ss_dssp CTTSCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSEE-EE--EEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEE T ss_pred CCCcceEEEEEcCCCCChHHHHHHhhcCCCCCCC-CccceE-EE--EEEECCEEEEEEEcCCCcchHHHHHHHcccCCEE Confidence 3466789999999999999999999865443221 111111 11 1222346788999999887777777788899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) ++|+|+.+..++......+...+... ....|+++++||.|+............ ...... ....+.++.+ T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nk~D~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~ 148 (171) T 1UPT_E 79 IYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANS---------LGLPAL-KDRKWQIFKT 148 (171) T ss_dssp EEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHH---------TTGGGC-CSCCEEEEEC T ss_pred EEEEECCChHHHHHHHHHHHHHHhCHHhhCCEEEEEEeCcccCCCCCHHHHHHH---------cCChhh-CCCCeEEEEC Confidence 99999988766554444444433221 235789999999999874321110000 000000 1122568899 Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184) |+.++.|+.+++.++.+.+. T Consensus 149 s~~~~~~i~~~~~~l~~~~~ 168 (171) T 1UPT_E 149 SATKGTGLDEAMEWLVETLK 168 (171) T ss_dssp CTTTCTTHHHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHh Confidence 99999999999998887653
##### No 222 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6SUR_E Ras-related protein Rab-33B, Autophagy-related protein; Autophagy, cell cycle; HET: GTP; 3.467A {Mus musculus} Probab=99.65 E-value=4.1e-20 Score=122.88 Aligned_cols=165 Identities=26% Similarity=0.490 Sum_probs=105.2 Template_Neff=12.200 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYD-RLRPLSYPDTDVI 83 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~ 83 (184) ....+|+++|.+++|||+|++++..........+.....+ .......+....+.+||++|.+.+. ..+..+...+|++ T Consensus 2 ~~~~~i~~~G~~~~GKs~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~d~~ 81 (173) T 6SUR_E 2 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGLERFRKSMVQHYYRNVHAV 81 (173) T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSSCCSCCCCCCSCEEEEEEEEETTEEEEEEEEECCCSGGGTTTTHHHHTSSCCEE T ss_pred CceEEEEEECCCCCChHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCChHHHHHhHhHHHhccCCEE Confidence 3568999999999999999999887654332222111111 1122233445678999999987654 4566667789999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) ++|+|+++..++......+....... ....|+++++||.|+....... ......++... ...++++ T Consensus 82 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~k~D~~~~~~~~------------~~~~~~~~~~~-~~~~~~~ 148 (173) T 6SUR_E 82 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVP------------TDLAQKFADTH-SMPLFET 148 (173) T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCTTTCCEEEEEECTTCTTTCCSC------------HHHHHHHHHHT-TCCEEEC T ss_pred EEEEeCCChhHhhhHHHHHHHHHHHchhcCCCEEEEEeccccccccCCC------------HHHHHHHHHHc-CCCEEEe Confidence 99999988665554433222222211 2367899999999997642210 01111122222 2578889 Q sequence1 163 SAKT---KDGVREVFEMATRAALQ 183 (184) Q Consensus 163 s~~~---~~~i~~~~~~~~~~~~~ 183 (184) |+.+ ++++.++|.++.+.+.. T Consensus 149 s~~~~~~~~~~~~~~~~l~~~i~~ 172 (173) T 6SUR_E 149 SAKNPNDNDHVEAIFMTLAHKLKS 172 (173) T ss_dssp CSSSCCSSCCHHHHHHHHHHHHHC T ss_pred ecCCCCCcccHHHHHHHHHHHHhc Confidence 9988 78899999988876643
##### No 223 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6A8D_A Gamma glutamyl transpeptidase (E.C.2.3.2.2); Chlamydomonas reinhardtii, ARF, ADP-ribosylation factor; HET: GDP; 2.34A {Chlamydomonas reinhardtii} Probab=99.65 E-value=4.2e-20 Score=125.30 Aligned_cols=165 Identities=19% Similarity=0.261 Sum_probs=110.1 Template_Neff=11.700 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ....++|+++|+.++|||||++++........ .++.... . .........+.+||++|.+.+...+..+...+|+++ T Consensus 20 ~~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~-~~~~~~~-~--~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 95 (192) T 6A8D_A 20 GNREMRVVMLGLDAAGKTTILYKLHIGEVLTT-VPTIGFN-V--EKVQYKNVVFTVWDVGGQEKLRPLWRHYFNNTDGLI 95 (192) T ss_dssp TTCCEEEEEEESTTSSHHHHHHHHCCSCCEEE-CCSSSCC-E--EEEEETTEEEEEEECSCSTTCHHHHHGGGTTCCEEE T ss_pred CCceEEEEEECCCCCCHHHHHHHHhCCCCCCC-CCcceEE-E--EEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE Confidence 45678999999999999999999886544321 1111111 1 112233457899999998888777888888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) +|+|+.+..++......+....... ....|+++++||.|+........ .. .......+... .+.++.+| T Consensus 96 lv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iilv~~K~D~~~~~~~~~-~~--------~~~~~~~~~~~-~~~~~~~s 165 (192) T 6A8D_A 96 FVVDSQDRDRIGKAAQEFQAILQDPLMLHSAILVFANKQDMKGCLTPAE-VC--------TALGLSDMRTR-KWHVQSSV 165 (192) T ss_dssp EEEESSCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHH-HH--------HHHTCTTCCSC-CEEEEECB T ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCEEEEEEhhHcCChhhhhh-hc--------HHHHHHHHHHc-CCCEEEEe Confidence 9999998776666554444443321 13688999999999876321111 00 01111111122 25688999 Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184) +.+++++.+++.++.+.+.+ T Consensus 166 ~~~~~~i~~~~~~l~~~~~~ 185 (192) T 6A8D_A 166 ATRGEGLYEGLDWLATTLKN 185 (192) T ss_dssp GGGTBTHHHHHHHHHHHHHC T ss_pred cCCCCCHHHHHHHHHHHHHH Confidence 99999999999988877653
##### No 224 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5G53_C ADENOSINE RECEPTOR A2A, ENGINEERED DOMAIN; SIGNALING PROTEIN, G PROTEIN COUPLED; HET: GDP, NEC, SOG; 3.4A {HOMO SAPIENS} Probab=99.65 E-value=4.4e-20 Score=128.59 Aligned_cols=177 Identities=12% Similarity=0.127 Sum_probs=101.2 Template_Neff=11.600 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) .....+|+++|..++|||+|++++............+...... ........+.+||++|+..+...+..++..+++++ T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~vi 90 (229) T 5G53_C 13 YRATHRLLLLGADNSGKSTIVKQMRIYHGGSGGSGGTSGIFET--KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAII 90 (229) T ss_dssp ---CEEEEEEECTTSSHHHHHHHHC---------------CEE--EEEETTEEEEEEECCSSSSSHHHHHTSCCCCSEEE T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCCCCCCceeeEEE--EEEeCCEEEEEEEcCCChHHHHHHHHHcCCCCEEE Confidence 4567899999999999999999998654432111111111111 12223467899999998877777777888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHT--RRELAKMKQEPVK----------------PE 145 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~--~~~~~~~~~~~~~----------------~~ 145 (184) +|+|+++...+......+....... ....|+++++||.|+...... ............. .. T Consensus 91 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (229) T 5G53_C 91 FVVDSSDYNRLQEALNDFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVT 170 (229) T ss_dssp EEEESSCTTHHHHHHHHHHHHHHCSTTTTCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCSSCCCCTTCCHHHH T ss_pred EEeccccHHHHHHHHHHHHHHHhcchhhcCEEEEEeeChhHhHHHHHcCCchHHHhChhhccCCCCCCCCCCCCCCchHH Confidence 9999998766665554444443322 136899999999999754321 1111100000000 00 Q sequence1 146 EGRDM-----A---N----RIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 146 ~~~~~-----~---~----~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) .+..+ . . ....+.++.+||+++.|+.++|..+.+.+.+ T Consensus 171 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 220 (229) T 5G53_C 171 RAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENARRIFNDCRDIIQR 220 (229) T ss_dssp HHHHHHHHHHHHHHHHSCCCSSCEEEEECC---CCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHccCCCCcceeEEEEEeecCHHHHHHHHHHHHHHHHH Confidence 00000 0 0 0013568889999999999999988876643
##### No 225 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2H18_A ADP-ribosylation factor-like protein 8A; GDP, GTPASE, MEMBRANE TRAFFICKING, Structural; HET: GDP; 1.902A {Homo sapiens} Probab=99.65 E-value=4.4e-20 Score=125.67 Aligned_cols=164 Identities=20% Similarity=0.277 Sum_probs=107.8 Template_Neff=11.200 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ..+..+|+++|..++|||||++++..........++..... .........+.+||++|.+.+...+..+...+|+++ T Consensus 28 ~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 104 (193) T 2H18_A 28 WKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM---RKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 104 (193) T ss_dssp HTSCEEEEEEESTTSSHHHHHHHHTTTCCEEEEC-----CC---EEEEETTEEEEEEESSCCHHHHHHHHHHTTTCSEEE T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE---EEeeeCCEEEEEEEcCCChHhHhHHHHHhcCCcEEE Confidence 45678999999999999999999987654433222221111 112233457889999998877777777788999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) +|+|+++..++......+....... ....|+++++||.|+............ ........ ....++++| T Consensus 105 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~k~D~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~s 174 (193) T 2H18_A 105 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEK---------MNLSAIQD-REICCYSIS 174 (193) T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHH---------TTGGGCCS-SCEEEEECB T ss_pred EEEeCCCHHHHHHHHHHHHHHhcCcccCCCcEEEEEeCCCCCCCCCHHHHHHH---------hChhhhcC-CCeEEEEEe Confidence 9999998766665554454444322 236889999999998763211110000 00001111 125788999 Q sequence1 164 AKTKDGVREVFEMATRAA 181 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~ 181 (184) +.++.++.++++++.+.+ T Consensus 175 ~~~~~~v~~l~~~l~~~~ 192 (193) T 2H18_A 175 CKEKDNIDITLQWLIQHS 192 (193) T ss_dssp TTTTBSHHHHHHHHHHTC T ss_pred cCccccHHHHHHHHHHhc Confidence 999999999999887653
##### No 226 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6VIK_B Rab-like protein 3; Immune system, small GTPase; HET: GSP; 1.7A {Mus musculus} Probab=99.63 E-value=8.3e-20 Score=128.87 Aligned_cols=174 Identities=17% Similarity=0.171 Sum_probs=104.6 Template_Neff=10.400 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV--ADIEVDGKQVELALWDTAGLE----DYDRLRPLSY 77 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~ 77 (184) ...+..+|+++|.+|+|||||++++....+.....++....+. ......+....+.+||++|.. .+...+..+. T Consensus 31 ~~~~~~~I~l~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~g~~~~~~~~~~~~~~~~ 110 (241) T 6VIK_B 31 ASLDRVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVHDYKEGTPEEKTYYIELWDVGGSVGSASSVKSTRAVFY 110 (241) T ss_dssp BCCCCCEEEEECCTTSSHHHHHHHHTTTCEEECSSCEEEEEEEEETTTSTTCEEEEEEEEECCC------CCCCCCGGGC T ss_pred cCCCceEEEEECCCCCCHHHHHHHHhcCcCCCCCCCcccceEEEEEecCCCCceEEEEEEEcCCCcCcchhchhHHHHHH Confidence 3466789999999999999999999877654332222211111 111112345678999999976 4555666777 Q sequence1 78 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-------------------CPNVPIILVGNKKDLRNDEHTRRELAKMK 138 (184) Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~~~~vv~nK~D~~~~~~~~~~~~~~~ 138 (184) ..++++++|+|+.+..++......+....... ....|+++|+||.|+............. T Consensus 111 ~~~d~~ilv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlv~~K~D~~~~~~~~~~~~~~- 189 (241) T 6VIK_B 111 NSVNGIILVHDLTNKKSSQNLYRWSLEVLNRDAVPTGVLVTNGDYDREQFADNQIPLLVIGTKLDQIHETKRHEVLIRT- 189 (241) T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHTC------------------------CCSCEEEEEECGGGSCHHHHHHHHHHH- T ss_pred hhCCEEEEEEECCChHHHHHHHHHHHHHHhcCCCCCCeEeeCCCcchhhhccCCCcEEEEEeChHHcChhhHHHHHHHH- Confidence 88999999999998776666554444443321 1468899999999987633211100000 Q sequence1 139 QEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) ... .... ........+.++.+|+.++.++.+++.++.+.+ T Consensus 190 ~~~--~~~~-~~~~~~~~~~~~~~sa~~~~~~~~l~~~i~~~i 229 (241) T 6VIK_B 190 AFL--AEDF-NAEEINLDCTNPRSSAAGSSNAVKLSRFFDKVI 229 (241) T ss_dssp HHH--HHHT-TCEEEECCTTCGGGGCTTSHHHHHHHHHHHHHH T ss_pred HHH--Hhhc-CchhccccccCCCccCCCChhHHHHHHHHHHHH Confidence 000 0000 000011115677899999999999987665544
##### No 227 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4P0T_B CENP-M; Mitosis, Kinetochore, CCAN, G-protein, cell; 1.493A {Homo sapiens} Probab=99.63 E-value=9.9e-20 Score=122.71 Aligned_cols=140 Identities=13% Similarity=0.081 Sum_probs=91.0 Template_Neff=10.000 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ..+..+|+++|.+++|||+|++++.... ....+.+.+||++|++.+. +...+|+++ T Consensus 17 ~~~~~ki~lvG~~~~GKstli~~l~~~~-------------------~~~~~~~~i~d~~g~~~~~-----~~~~~d~ii 72 (176) T 4P0T_B 17 GLNTATILLVGTEDALLQQLADSMLKED-------------------CASELKVHLAKSLPLPSSV-----NRPRIDLIV 72 (176) T ss_dssp ---CEEEEEECSCHHHHHHHHHHHHSSC-------------------CSSCEEEEEESSSCCC-----------CCSEEE T ss_pred CCCceeEEEECCCCcchHHHHHHHcccc-------------------CCCeEEEEEEcCCCCCccC-----CCCCCeEEE Confidence 4557899999999999999999987543 1123467789999987554 556889999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) +++|+++..++......+....... ...|+++++||+|+...... .......++.... +.++.+|+ T Consensus 73 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~ilv~nk~D~~~~~~~------------~~~~~~~~~~~~~-~~~~~~s~ 138 (176) T 4P0T_B 73 FVVNLHSKYSLQNTEESLRHVDASF-FLGKVCFLATGAGRESHCSI------------HRHTVVKLAHTYQ-SPLLYCDL 138 (176) T ss_dssp EEEETTCHHHHHHHHHHHTTSCGGG-GTTSEEEEEESTTSTTSCHH------------HHHHHHHHHHHTT-CCEEECCT T ss_pred EEEECCCcchHHHHHHHHhhccHHh-ccCcEEEEEeCCCcccceec------------CHHHHHHHHHHcC-CCEEEEeC Confidence 9999998777665533333222211 12489999999998753211 0111111222222 57889999 Q sequence1 165 KTKDGVREVFEMATRAAL 182 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~~ 182 (184) .++.++.++++++.+.+. T Consensus 139 ~~~~~v~~~~~~l~~~~~ 156 (176) T 4P0T_B 139 EVEGFRATMAQRLVRVLQ 156 (176) T ss_dssp TSHHHHHHHHHHHHHHHH T ss_pred CCHhHHHHHHHHHHHHHH Confidence 999999999998877654
##### No 228 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4WAU_B Centromere protein M; native-SAD, S-SAD, sulfur-SAD, sulfur SAD; 2.2A {Homo sapiens} Probab=99.63 E-value=9.9e-20 Score=122.71 Aligned_cols=140 Identities=13% Similarity=0.081 Sum_probs=92.3 Template_Neff=10.000 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ..+..+|+++|.+++|||+|++++.... ....+.+.+||++|++.+. +...+|+++ T Consensus 17 ~~~~~ki~lvG~~~~GKstli~~l~~~~-------------------~~~~~~~~i~d~~g~~~~~-----~~~~~d~ii 72 (176) T 4WAU_B 17 GLNTATILLVGTEDALLQQLADSMLKED-------------------CASELKVHLAKSLPLPSSV-----NRPRIDLIV 72 (176) T ss_dssp ---CEEEEEECSCHHHHHHHHHHHHHSC-------------------CSSCEEEEEESSSSCC---------CCCCSEEE T ss_pred CCCceeEEEECCCCcchHHHHHHHcccc-------------------CCCeEEEEEEcCCCCCccC-----CCCCCeEEE Confidence 4557899999999999999999987543 1123467789999987554 556889999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) +++|+++..++......+....... ...|+++++||+|+...... .......++.... +.++.+|+ T Consensus 73 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~ilv~nk~D~~~~~~~------------~~~~~~~~~~~~~-~~~~~~s~ 138 (176) T 4WAU_B 73 FVVNLHSKYSLQNTEESLRHVDASF-FLGKVCFLATGAGRESHCSI------------HRHTVVKLAHTYQ-SPLLYCDL 138 (176) T ss_dssp EEEETTCHHHHHHHHHHGGGSCGGG-GTTSEEEEEESTTSTTSCHH------------HHHHHHHHHHHTT-CCEEECCT T ss_pred EEEECCCcchHHHHHHHHhhccHHh-ccCcEEEEEeCCCcccceec------------CHHHHHHHHHHcC-CCEEEEeC Confidence 9999998777665533333222211 12489999999998753211 0111111222222 57889999 Q sequence1 165 KTKDGVREVFEMATRAAL 182 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~~ 182 (184) .++.++.++++++.+.+. T Consensus 139 ~~~~~v~~~~~~l~~~~~ 156 (176) T 4WAU_B 139 EVEGFRATMAQRLVRVLQ 156 (176) T ss_dssp TSHHHHHHHHHHHHHHHH T ss_pred CCHhHHHHHHHHHHHHHH Confidence 999999999998877654
##### No 229 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6FAE_B IQ motif and SEC7 domain-containing; GTPase GEF, HYDROLASE; HET: EDO; 2.35A {Homo sapiens} Probab=99.62 E-value=1.1e-19 Score=125.07 Aligned_cols=165 Identities=17% Similarity=0.234 Sum_probs=103.5 Template_Neff=11.800 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ....++|+++|..++|||+|++++....+... .++.... ..........+.+||++|++.+...+..++..+|+++ T Consensus 46 ~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~-~~t~~~~---~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 121 (213) T 6FAE_B 46 YFQSMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 121 (213) T ss_dssp SCEEEEEEEECCTTSSHHHHHHTTC------C-CCCSEEC---EEEEECSSEEEEEEECCCCTTTGGGGHHHHTTCCEEE T ss_pred cccCeEEEEECCCCCCHHHHHHHHhcCCCCCc-CCcccEE---EEEEEEcCEEEEEEEcCCChhhHHHHHHHhccCCEEE Confidence 45678999999999999999999987654322 1111111 1112223467889999998887777777888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) +|++..+..++......+...+... ....|+++++||.|+........... .....+.... .+.++++| T Consensus 122 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nk~D~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~s 191 (213) T 6FAE_B 122 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITD---------KLGLHSLRHR-NWYIQATC 191 (213) T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECC---CCCCHHHHHH---------HTTGGGCTTC-CEEEEEEB T ss_pred EEEECCChhhHHHHHHHHHHHHhChhhcCCeEEEEEeCCCccccCCHHHHHH---------HhChhhhccC-CeEEEEee Confidence 9999988766666544454444322 23588999999999875422111100 0011111111 25688999 Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184) +.++.++.++|.++.+.+.+ T Consensus 192 ~~~~~~~~~~~~~l~~~~~~ 211 (213) T 6FAE_B 192 ATSGDGLYEGLDWLSNQLRN 211 (213) T ss_dssp GGGTBTHHHHHHHHHHHC-- T ss_pred ccCCCCHHHHHHHHHHHHHc Confidence 99999999999999887754
##### No 230 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4WAU_A Centromere protein M; native-SAD, S-SAD, sulfur-SAD, sulfur SAD; 2.2A {Homo sapiens} Probab=99.62 E-value=1.1e-19 Score=122.44 Aligned_cols=140 Identities=13% Similarity=0.081 Sum_probs=93.5 Template_Neff=10.100 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) .....+|+++|.+++|||+|++++.... ....+.+.+||++|++.+. +...+|+++ T Consensus 17 ~~~~~ki~lvG~~~~GKstli~~l~~~~-------------------~~~~~~~~i~d~~g~~~~~-----~~~~~d~ii 72 (176) T 4WAU_A 17 GLNTATILLVGTEDALLQQLADSMLKED-------------------CASELKVHLAKSLPLPSSV-----NRPRIDLIV 72 (176) T ss_dssp ---CEEEEEECSCHHHHHHHHHHHHSSC-------------------CSSCEEEEEESSSSCCS-C-----CCSCCSEEE T ss_pred CCCceeEEEECCCCcchHHHHHHHcccc-------------------CCCeEEEEEEcCCCCCccC-----CCCCCeEEE Confidence 4557899999999999999999987543 1123467789999987554 556889999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) +++|+++..++......+....... ...|+++++||+|+...... .......++.... ..++.+|+ T Consensus 73 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~ilv~nk~D~~~~~~~------------~~~~~~~~~~~~~-~~~~~~sa 138 (176) T 4WAU_A 73 FVVNLHSKYSLQNTEESLRHVDASF-FLGKVCFLATGAGRESHCSI------------HRHTVVKLAHTYQ-SPLLYCDL 138 (176) T ss_dssp EEEETTCHHHHHHHHHHGGGSCGGG-GTTSEEEEEESTTSTTSCHH------------HHHHHHHHHHHTT-CCEEECCT T ss_pred EEEECCCcchHHHHHHHHhhccHHh-ccCcEEEEEeCCCcccceec------------CHHHHHHHHHHcC-CCEEEEeC Confidence 9999998777665533333222211 12489999999998753211 0011111222222 57888999 Q sequence1 165 KTKDGVREVFEMATRAAL 182 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~~ 182 (184) .++.++.++++++.+.+. T Consensus 139 ~~~~~v~~~~~~l~~~i~ 156 (176) T 4WAU_A 139 EVEGFRATMAQRLVRVLQ 156 (176) T ss_dssp TSHHHHHHHHHHHHHHHH T ss_pred CCHhHHHHHHHHHHHHHH Confidence 999999999998877654
##### No 231 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5KSP_B Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GDP; 2.162A {Homo sapiens} Probab=99.62 E-value=1.3e-19 Score=123.23 Aligned_cols=160 Identities=16% Similarity=0.167 Sum_probs=100.5 Template_Neff=11.100 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE---NYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) .....+|+++|.+++|||+|++++....+.......... .....+...+....+.+||++|+..+. .++..++ T Consensus 5 ~~~~~ki~l~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~----~~~~~~~ 80 (190) T 5KSP_B 5 QRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESEFLT----EAEIICD 80 (190) T ss_dssp --CEEEEEEECCTTSSHHHHHHHHTTCCTTTTC-------CCEEEEEEEETTEEEEEEEEEECCCSCCC----HHHHCCS T ss_pred cCCeEEEEEECCCCCCHHHHHHHHcCCcccccccccCCCcceEEEEEEEECCEEEEEEEEeCCCchhhh----hHHhhCC Confidence 456789999999999999999999876654322111100 001122233444567788888866433 2446789 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYM 160 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (184) ++++|+|+++..++......+...... ...|+++|+||.|+....... ......++...+. +.++ T Consensus 81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~ilv~~k~D~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 146 (190) T 5KSP_B 81 VVCLVYDVSNPKSFEYCARIFKQHFMD--SRIPCLIVAAKSDLHEVKQEY------------SISPTDFCRKHKMPPPQA 146 (190) T ss_dssp EEEEEEETTCTTSHHHHHHHCCCCCTT--SSCCEEEEEECTTSCCCCCSS------------SSCHHHHHHHTTCCCCEE T ss_pred EEEEEEeCCChhHHHHHHHHHHHHccC--CCCCEEEEEecCCCccccccc------------cCCHHHHHHHCCCCCCee Confidence 999999999877776664433333322 468999999999987532110 1111222222221 2247 Q sequence1 161 ECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~~ 182 (184) .+|+.++.++.++++++.+.+. T Consensus 147 ~~s~~~~~~v~~~~~~l~~~~~ 168 (190) T 5KSP_B 147 FTCNTADAPSKDIFVKLTTMAM 168 (190) T ss_dssp CCSCCSSCCCCHHHHHHHHHHC T ss_pred EeeCCCCCCHHHHHHHHHHHhh Confidence 8999999999999998887664
##### No 232 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6LI3_A G-protein coupled receptor 52, Guanine; G-protein coupled receptor, orphan GPCR; 3.32A {Homo sapiens} Probab=99.62 E-value=1.3e-19 Score=128.26 Aligned_cols=175 Identities=13% Similarity=0.131 Sum_probs=64.8 Template_Neff=10.900 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) ...++|+++|.+++|||+|++++............+....... .......+.+||++|.......+...+..++++++ T Consensus 33 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~vi~ 110 (248) T 6LI3_A 33 RATHRLLLLGADNSGKSTIVKQMRILHGGSGGSGGTSGIFETK--FQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIF 110 (248) T ss_dssp HTCCEEEEECCSSSSCHHHHHHHHHHC----------------------------------------------------- T ss_pred hhCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCcceeEEEE--EEECCEEEEEEECCCChhHHHHHHHHccCccEEEE Confidence 5678999999999999999999875543221111111111111 11234578899999988777777777888999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHT--RRELAKMKQEPVK----------------PEE 146 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~--~~~~~~~~~~~~~----------------~~~ 146 (184) |+|+++..++......+....... ....|+++++||.|+...... ...+......... ... T Consensus 111 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (248) T 6LI3_A 111 VVDSSDYNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTR 190 (248) T ss_dssp ------------------CBSEECSSCEEESCCSGGTSSEEESCTHHHHHHTSSTCEEEHHHHHSCTTSTSCCSCSCSTH T ss_pred EcCccchhhHHHHHHHHHHHHccccccCCEEEEEeeCcchhHHHHHcCCchHHHhChhhccCCCCCCCCCCCCCCccHHH Confidence 999998776666554444443322 136789999999999764321 1111110000000 000 Q sequence1 147 GR-----DMAN-------RIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 147 ~~-----~~~~-------~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) .. .+.. ....+.++++||+++.++..+|..+.+.+. T Consensus 191 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 238 (248) T 6LI3_A 191 AKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENARRIFNDCRDIIQ 238 (248) T ss_dssp HHHHHHHHHTTTHHHHCSSSCCEEEEECCSSCSSHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHccCCCCcceEEEEEEeccCHHHHHHHHHHHHHHHH Confidence 00 0000 001256788999999999999988877553
##### No 233 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1X3S_A Ras-related protein Rab-18; GTPase, Rab, GNP, Structural Genomics; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Probab=99.62 E-value=1.4e-19 Score=123.42 Aligned_cols=165 Identities=30% Similarity=0.472 Sum_probs=107.2 Template_Neff=11.200 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) ....++++++|.+++|||++++++..........+..... .............+.+||++|.+.+...+..++..++++ T Consensus 12 ~~~~~~i~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (195) T 1X3S_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195) T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE T ss_pred hcceEEEEEECCCCCCHHHHHHHHcCCCCCcccCceeEEEEEEEEEEECCeEEEEEEEeCCCChHHHhhcHHHcCCCCEE Confidence 4557899999999999999999988765432221111111 111222233356789999999887777777788899999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) ++|+++.+..++......+..+.... ....|+++++||.|........ ......+... ...++.+ T Consensus 92 i~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~~k~d~~~~~~~~-------------~~~~~~~~~~-~~~~~~~ 157 (195) T 1X3S_A 92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDR-------------NEGLKFARKH-SMLFIEA 157 (195) T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCH-------------HHHHHHHHHT-TCEEEEC T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeccccccCccCH-------------HHHHHHHHHc-CCeEEEe Confidence 99999998766655433222222211 2357889999999975422110 0111111122 2468899 Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184) |++++.++.++|.++...+++ T Consensus 158 sa~~~~~v~~~~~~i~~~~~~ 178 (195) T 1X3S_A 158 SAKTCDGVQCAFEELVEKIIQ 178 (195) T ss_dssp CTTTCTTHHHHHHHHHHHHHT T ss_pred eCCCCCCHHHHHHHHHHHHHc Confidence 999999999999988877654
##### No 234 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2H57_B Crystal structure of human ADP-ribosylation; GTP, GTPASE, MEMBRANE TRAFFICKING, STRUCTURAL; HET: GTP; 2.0A {Homo sapiens} Probab=99.62 E-value=1.5e-19 Score=122.06 Aligned_cols=167 Identities=14% Similarity=0.187 Sum_probs=106.6 Template_Neff=12.100 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY-VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) ......+|+++|..++|||+|++++......... .++.... . .........+.+||++|...+...+..++..+++ T Consensus 17 ~~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 93 (190) T 2H57_B 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS-I--EKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190) T ss_dssp ---CEEEEEEECCTTSSHHHHHHHTSCTTTCCSSCCCCSSEE-E--EEEECSSCEEEEEEECCSGGGGGGGGGGTTTCSE T ss_pred CCCceEEEEEEcCCCCCHHHHHHHHcccccCCCCCCCceeEe-E--EEEEcCCEEEEEEECCCChhhHHHHHHHhhcCCE Confidence 3567789999999999999999999876542221 1111111 1 1122345678899999988777777778888999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 159 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184) +++|+|.++..++......+........ ...|+++++||.|+............ . ...... .....+ T Consensus 94 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nk~D~~~~~~~~~~~~~-~--------~~~~~~-~~~~~~ 163 (190) T 2H57_B 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQL-L--------CLENIK-DKPWHI 163 (190) T ss_dssp EEEEEETTCSTTHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHH-T--------TGGGCC-SSCEEE T ss_pred EEEEEECCChhhHHHHHHHHHHHHcCcchhcCCCCEEEEEECCCccCcCChHHHHHH-h--------cHhhcc-CCCeEE Confidence 9999999886655554443333332211 26789999999998763221111000 0 000001 112568 Q sequence1 160 MECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 160 ~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) +.+|+.++.++.+++.++.+.+.+ T Consensus 164 ~~~s~~~~~~i~~~~~~l~~~~~~ 187 (190) T 2H57_B 164 CASDAIKGEGLQEGVDWLQDQIQT 187 (190) T ss_dssp EECBTTTTBTHHHHHHHHHHHHC- T ss_pred EEccCCCCCCHHHHHHHHHHHHHh Confidence 899999999999999998877643
##### No 235 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >7D7M_D Prostaglandin E2 receptor EP4 subtype,Prostaglandin; prostaglandin E receptor, EP4, GPCR; HET: P2E; 3.3A {Homo sapiens} Probab=99.61 E-value=1.9e-19 Score=127.35 Aligned_cols=176 Identities=13% Similarity=0.121 Sum_probs=104.3 Template_Neff=11.100 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) .....+|+++|.+++|||+|++++..........+....... .........+.+||++|+..+...+..++..+++++ T Consensus 33 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~d~vi 110 (249) T 7D7M_D 33 YRATHRLLLLGADNSGKSTIVKQMRIYHGGSGGSGGTSGIFE--TKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAII 110 (249) T ss_dssp HHHSEEECCCCCTTSSTTTSSCC-------------CCSSEE--EEEESSSCEEEEEECCSSCSCCSTTTTTCCSCSBCC T ss_pred cccccEEEEECCCCCCHHHHHHHHHHHcCCCCCCCCceeeEE--EEEEECCEEEEEEEcCCChHHHHHHHHHccCCcEEE Confidence 356789999999999999999998765433211111111111 112223467889999998877777777788999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHT--RRELAKMKQEPVK----------------PE 145 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~--~~~~~~~~~~~~~----------------~~ 145 (184) +|+|+++..++......+....... ....|+++++||+|+...... ...+......... .. T Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (249) T 7D7M_D 111 FVVDSSDYNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVT 190 (249) T ss_dssp EEEESSCHHHHHHHHHHHHHHHHCSSSTTCBBCEEEECHHHHHHHHHHCSSCHHHHCTHHHHCCCCTTCCCCTTCCHHHH T ss_pred EECCccchhHHHHHHHHHHHHHhccccccCeEEEEeeCcccchHHHHcCCchHHHhChhhccCCCCCCCCCCCCCCccHH Confidence 9999998777766655555444322 136799999999999864321 1111110000000 00 Q sequence1 146 EGRDM-----A-------NRIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 146 ~~~~~-----~-------~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ....+ . .....+.++++||+++.|+..+|..+.+.+. T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 239 (249) T 7D7M_D 191 RAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENARRIFNDCRDIIQ 239 (249) T ss_dssp HHHHHHHHHHHHHHHHHCTTSCCBCCEECCSSCSCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHcccCCCcceEEEEEeeccCHHHHHHHHHHHHHHHH Confidence 00000 0 0001245788999999999999988877654
##### No 236 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6G79_A Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit; G-protein coupled receptor, 5-HT1B, Mini-Go; HET: EP5; 3.78A {Homo sapiens} Probab=99.60 E-value=2.8e-19 Score=124.08 Aligned_cols=177 Identities=15% Similarity=0.158 Sum_probs=67.5 Template_Neff=11.800 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184) ..+..+++++|..++|||+|++++............... ............+.+||++|...+...+..++..+++++ T Consensus 27 ~~~~~~i~i~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 104 (225) T 6G79_A 27 AAKDVKLLLLGADNSGKSTIVKQMKIIHGGSGGSGGTTG--IVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAII 104 (225) T ss_dssp HHHSEEEEEEECTTSSHHHHHHHHC------------------------------------------------------- T ss_pred cccCcEEEEEcCCCCCchHHHhhceeecCCCCcccccce--eEEEEEEEeCeEEEEEecCCCchhhHHHHHhhcCCcEEE Confidence 356789999999999999999998765432111111111 111112223457889999998877777777888999999 Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEP---VKPEEGRDMANR------- 153 (184) Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~------- 153 (184) +|+|..+..++......+....... ....|+++++||.|+................. ........+... T Consensus 105 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (225) T 6G79_A 105 FCVDLSDYNRMHESLMLFDSICNNKFFIDTSIILFLNKKDLFGEKIKKSPLTICFPEYTGPNTYEDAAAYIQAQFESKNR 184 (225) T ss_dssp --------------CCCCCSBEECSCCHHGGCSEEESCHHHHHHHTTGGEEEEHHHHHSTSC--CCHHHHHHHHHHHSCC T ss_pred EEEehhhccchHHHHHHHHHHHcChhhcCCeEEEEEeChhHhhHHhccCCcchhccccCCCCCHHHHHHHHHHHHHHhcc Confidence 9999998766666544444443322 12689999999999987432110000000000 000000001000 Q sequence1 154 --IGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 154 --~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) ...+.++++|++++.++.++|.++.+.+++ T Consensus 185 ~~~~~~~~~~~S~~~~~~i~~l~~~i~~~~~~ 216 (225) T 6G79_A 185 SPNKEIYCHMTCATDTNNAQVIFDAVTDIIIA 216 (225) T ss_dssp CSSCCEEEECCCTTCSCCHHHHHHHHHHHHHH T ss_pred CCCCeEEEEEEEecChhhHHHHHHHHHHHHHH Confidence 113568899999999999999998887754
##### No 237 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6S6D_C Ras-related GTP-binding protein A, Ras-related; small GTPases, mTORC1 activator, roadblock; HET: GTP, GDP, 9JE; 2.5A {Homo sapiens} Probab=99.60 E-value=3.1e-19 Score=134.70 Aligned_cols=171 Identities=14% Similarity=0.221 Sum_probs=92.6 Template_Neff=8.800 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVD-GKQVELALWDTAGLEDYDRLR---PLSYPDT 80 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~---~~~~~~~ 80 (184) ....++|+++|..++|||||++++.+...+.................. ...+.+.+||+||+..+.... ..++..+ T Consensus 58 ~~~~~kIllvG~~~sGKSSli~~l~~~~~~~~t~~~~~t~~~~~~~~~~~~~~~l~iwD~pG~~~~~~~~~~~~~~~~~~ 137 (399) T 6S6D_C 58 DSSKPRILLMGLRRSGKNSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGT 137 (399) T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHSCCCSGGGGCC------------CCSSSEEEEC---------------CCTTTTC T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCcccceecccccceEEeeecCCCcccEEEEECCCCcccCCCccCHHHHhccc Confidence 456789999999999999999999843322111100000001111122 345689999999988776554 6778899 Q sequence1 81 DVILMCFSIDSP--DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR---IG 155 (184) Q Consensus 81 ~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 155 (184) +++++|+|+.+. ..+......+.. +....+..|+++++||+|+............... .....+... .. T Consensus 138 d~lI~ViD~~~~~~~~~~~l~~~l~~-~~~~~~~~~vivv~nK~D~~~~~~~~~~~~~i~~-----~~~~~l~~~~~~~~ 211 (399) T 6S6D_C 138 GALIYVIDAQDDYMEALTRLHITVSK-AYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQ-----RANDDLADAGLEKL 211 (399) T ss_dssp SEEEEEEESSSCCHHHHHHHHHHHHH-HHHHCTTSEEEEEEECGGGSCHHHHHHHHHHHHH-----HHHHHHHHTTCTTC T ss_pred CEEEEEEecCCchHHHHHHHHHHHHH-HHHHCCCCcEEEEEEecCCCChhhHHHHHHHHHH-----HHHHHHHHcCcccC Confidence 999999999986 234444333322 2222357899999999999764221111111000 000111111 11 Q sequence1 156 AFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 156 ~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) .+.++.+|+. +.++.++|+++++.++ T Consensus 212 ~i~~~~tS~~-d~~i~eafs~ii~~l~ 237 (399) T 6S6D_C 212 HLSFYLTSIY-DHSIFEAFSKVVQKLI 237 (399) T ss_dssp CEEEEECCTT-SSHHHHHHHHHHHHTC T ss_pred ceEEEEEecc-CccHHHHHHHHHHHHh Confidence 2568889998 8899999988877654
##### No 238 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6S6A_C Ras-related GTP-binding protein A, Ras-related; small GTPases, mTORC1 activator, roadblock; HET: 9JE, GTP, GDP; 2.63A {Homo sapiens} Probab=99.59 E-value=3.7e-19 Score=134.27 Aligned_cols=170 Identities=14% Similarity=0.217 Sum_probs=89.8 Template_Neff=8.800 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEV-DGKQVELALWDTAGLEDYDRLR---PLSYPD 79 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~---~~~~~~ 79 (184) ....++|+++|..++|||||++++.+.... ...+...... ...... ......+.+||+||++.+.... ..++.. T Consensus 58 ~~~~~kI~lvG~~~sGKSSli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~pG~~~~~~~~~~~~~~~~~ 136 (399) T 6S6A_C 58 DSSKPRILLMGLRRSGKSSIQKVVFHKMSP-NENLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG 136 (399) T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHC-----------------------CCSSSEEEEC---------------CCGGGS T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHhccCCc-ccccccccceeeEEeeccCCCceeeEEEEcCCCcccCCCccCHHHhhcc Confidence 456789999999999999999999853222 1111111111 111111 1345688999999988776543 677889 Q sequence1 80 TDVILMCFSIDSP--DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR---I 154 (184) Q Consensus 80 ~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 154 (184) ++++++|+|+.+. ..+......+.. .....+..|+++++||+|+............... .....++.. . T Consensus 137 ~d~vI~ViD~~~~~~~~~~~l~~~l~~-~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~i~~-----~~~~~l~~~~~~~ 210 (399) T 6S6A_C 137 TGALIYVIDAQDDYMEALTRLHITVSK-AYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQ-----RANDDLADAGLEK 210 (399) T ss_dssp CSEEEEEEESSSCCHHHHHHHHHHHHH-HHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHH-----HHHHHHHTTTCTT T ss_pred ccEEEEEEECCCChHHHHHHHHHHHHH-HHHHCCCCCEEEEEEeccCCCHHHHHHHHHHHHH-----HHHHHHHHhcccc Confidence 9999999999986 223222222222 2222357899999999999864321111111000 001111111 1 Q sequence1 155 GAFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 155 ~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ....++.+|+. +.++.++|+++++.++ T Consensus 211 ~~~~~~~tS~~-~~~i~eafs~vi~~l~ 237 (399) T 6S6A_C 211 LHLSFYLTSIY-DHSIFEAFSKVVQKLI 237 (399) T ss_dssp SCEEEEECCTT-SSHHHHHHHHHHHTTC T ss_pred CcceEEEEecC-CccHHHHHHHHHHHHh Confidence 22568899999 8899999998887664
##### No 239 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6F1Y_j Cytoplasmic dynein 1 heavy chain; Cryo-EM, Complex, MOTOR PROTEIN; 3.4A {Homo sapiens} Probab=99.59 E-value=4e-19 Score=131.42 Aligned_cols=172 Identities=13% Similarity=0.208 Sum_probs=103.9 Template_Neff=9.700 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEV--DGKQVELALWDTAGLEDYDRLRPLSYP---- 78 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~---- 78 (184) .+..+|+++|.+++|||||+++|........ +....+ ...+.. .+....+.+||++|.+.+..++..++. T Consensus 16 ~~~~~vlvlG~~~~GKssLi~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~l~~~~l~~~~~ 92 (337) T 6F1Y_j 16 PSGKNILVFGEDGSGKTTLMTKLQGAEHGKK---GRGLEYLYLSVHDEDRDDHTRCNVWILDGDLYHKGLLKFAVSAESL 92 (337) T ss_dssp CCCEEEEEECCSSTTHHHHHHHHC---CCCC---SSSCCCEEEEECCSSSCCCEEEEECEECSCSSTHHHHHTTCCTTTS T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCccCCC---CCccceEEEEeecCCCCCcceEEEEEeCCChhhHhHHHHhcCcccc Confidence 4468999999999999999999987643211 111111 111111 124568899999998877766766666 Q sequence1 79 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFC------------------------------------------------ 110 (184) Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------------------------------------------ 110 (184) .++++++|+|++++.++......|...+.... T Consensus 93 ~~~~viiv~D~~~~~~~~~~l~~wl~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (337) T 6F1Y_j 93 PETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEKMRELERKFVKDFQDYMEPEEGCQGSPQRRGPLTSGSDEE 172 (337) T ss_dssp SSEEEEECCCSSSHHHHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTSSSTTCC------------------ T ss_pred cCeEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCccccCCCCCccCCCCCCCCccc Confidence 78999999999987764333344444332211 Q sequence1 111 --------------PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEM 176 (184) Q Consensus 111 --------------~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 176 (184) ...|+++|+||+|+.............. ..........++...+ ..++.+|++++.|+..++.+ T Consensus 173 ~~~~~~~~~~~~~~~~~piivV~tK~D~~~~~~~~~~~~~~~-~~~i~~~lr~~~~~~g-~~l~~~S~~~~~~i~~l~~~ 250 (337) T 6F1Y_j 173 NVALPLGDNVLTHNLGIPVLVVCTKCDAVSVLEKEHDYRDEH-LDFIQSHLRRFCLQYG-AALIYTSVKEEKNLDLLYKY 250 (337) T ss_dssp -------CCCCCCSCCSSEEEECCCCTTHHHHHHHTCCSHHH-HHHHHHHHHHHHHHHT-CCEECCCTTCCTTHHHHHHH T ss_pred ccccCCCCCeeeecCCCCEEEEEeCccHHHHHHhcCCCChHH-HHHHHHHHHHHHHHhC-cEEEEcCCCCcchHHHHHHH Confidence 2689999999999976322110000000 0011111222333333 57889999999999999988 Q sequence1 177 ATRAAL 182 (184) Q Consensus 177 ~~~~~~ 182 (184) +.+.+. T Consensus 251 l~~~~~ 256 (337) T 6F1Y_j 251 IVHKTY 256 (337) T ss_dssp HHC--- T ss_pred HHHHHh Confidence 877654
##### No 240 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6VIJ_A Rab-like protein 3; Immune system, small GTPase; HET: GDP; 1.95A {Mus musculus} Probab=99.59 E-value=5e-19 Score=125.26 Aligned_cols=167 Identities=17% Similarity=0.199 Sum_probs=103.7 Template_Neff=10.300 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIE-----VDGKQVELALWDTAGLE----DYDRLRP 74 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~-----~~~~~~~~~i~D~~g~~----~~~~~~~ 74 (184) ..+..+|+++|.+|+|||+|++++..........++..... ..... .......+.+||++|.. .+...+. T Consensus 32 ~~~~~~i~lvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~ 111 (245) T 6VIJ_A 32 SLDRVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVDIRVHDYKEGTPEEKTYYIELWDVGGSVGSASSVKSTRA 111 (245) T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSEEEEEEEEEETTTSTTCEEEEEEEEECCCCTTCCHHHHHHHH T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCccCCCCCcccceeEEEEEEEecCCCCCCcceEEEEEEcCCCCCChhhhHHHHH Confidence 45678999999999999999999987654332221111111 01111 11234678999999976 4445566 Q sequence1 75 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-------------------CPNVPIILVGNKKDLRNDEHTRRELA 135 (184) Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~~~~vv~nK~D~~~~~~~~~~~~ 135 (184) .++..++++++|+|+.+..++......+....... ....|+++|+||+|+........... T Consensus 112 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vivv~~K~D~~~~~~~~~~~~ 191 (245) T 6VIJ_A 112 VFYNSVNGIILVHDLTNKKSSQNLYRWSLEVLNRDAVPTGVLVTNGDYDREQFADNQIPLLVIGTKLDQIHETKRHEVLI 191 (245) T ss_dssp GGGSSCCEEEEEEETTCHHHHHHHHHHHHHHTTC------------------CCSCCSCEEEEEECGGGSCGGGHHHHHH T ss_pred HHHhcCCEEEEEEECCChHHHHhHHHHHHHHHhcCCCCCCeEeeCCCCChHHhccCCCcEEEEEeChHHccccchHHHHH Confidence 66778999999999998766655544333333211 13678999999999876432111100 Q sequence1 136 KMKQEPVKPEEGRDMANRI------GAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 136 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) .....+... ..+.++++||+++.++.+++..+...+ T Consensus 192 ----------~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~i~~~i 233 (245) T 6VIJ_A 192 ----------RTAFLAEDFNAEEINLDCTNPRSSAAGSSNAVKLSRFFDKVI 233 (245) T ss_dssp ----------HHHHHHHHTTCEEEECCTTCGGGGCTTSHHHHHHHHHHHHHH T ss_pred ----------HHHHHHhhcCchhcCcccCCCCcCCCCCccHHHHHHHHHHHH Confidence 011111111 125678899999999999887655544
##### No 241 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6VIJ_B Rab-like protein 3; Immune system, small GTPase; HET: GDP; 1.95A {Mus musculus} Probab=99.59 E-value=5e-19 Score=125.26 Aligned_cols=167 Identities=17% Similarity=0.199 Sum_probs=102.0 Template_Neff=10.300 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIE-----VDGKQVELALWDTAGLE----DYDRLRP 74 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~-----~~~~~~~~~i~D~~g~~----~~~~~~~ 74 (184) ..+..+|+++|.+|+|||+|++++..........++..... ..... .......+.+||++|.. .+...+. T Consensus 32 ~~~~~~i~lvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~ 111 (245) T 6VIJ_B 32 SLDRVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVDIRVHDYKEGTPEEKTYYIELWDVGGSVGSASSVKSTRA 111 (245) T ss_dssp ---CEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSEEEEEEEEEETTTSTTCEEEEEEEEECCCCTTSCHHHHHHHH T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCccCCCCCcccceeEEEEEEEecCCCCCCcceEEEEEEcCCCCCChhhhHHHHH Confidence 45678999999999999999999987654332221111111 01111 11234678999999976 4445566 Q sequence1 75 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-------------------CPNVPIILVGNKKDLRNDEHTRRELA 135 (184) Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~~~~vv~nK~D~~~~~~~~~~~~ 135 (184) .++..++++++|+|+.+..++......+....... ....|+++|+||+|+........... T Consensus 112 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vivv~~K~D~~~~~~~~~~~~ 191 (245) T 6VIJ_B 112 VFYNSVNGIILVHDLTNKKSSQNLYRWSLEVLNRDAVPTGVLVTNGDYDREQFADNQIPLLVIGTKLDQIHETKRHEVLI 191 (245) T ss_dssp GGGSSCCEEEEEEETTCHHHHHHHHHHHHHHHCC------------------CTTCCSCEEEEEECGGGSCHHHHHHHHH T ss_pred HHHhcCCEEEEEEECCChHHHHhHHHHHHHHHhcCCCCCCeEeeCCCCChHHhccCCCcEEEEEeChHHccccchHHHHH Confidence 66778999999999998766655544333333211 13678999999999876432111100 Q sequence1 136 KMKQEPVKPEEGRDMANRI------GAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 136 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) .....+... ..+.++++||+++.++.+++..+...+ T Consensus 192 ----------~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~i~~~i 233 (245) T 6VIJ_B 192 ----------RTAFLAEDFNAEEINLDCTNPRSSAAGSSNAVKLSRFFDKVI 233 (245) T ss_dssp ----------HHHHHHHHTTCEEEECCTTCGGGGCTTSHHHHHHHHHHHHHH T ss_pred ----------HHHHHHhhcCchhcCcccCCCCcCCCCCccHHHHHHHHHHHH Confidence 011111111 125678899999999999887655544
##### No 242 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2GJ8_B tRNA modification GTPase trmE; G-domain dimer, alpha-beta-sandwich, Hydrolase; HET: MSE, ALF, GDP; 1.7A {Escherichia coli BL21(DE3)} SCOP: c.37.1.8 Probab=99.58 E-value=5.7e-19 Score=116.85 Aligned_cols=156 Identities=21% Similarity=0.238 Sum_probs=97.3 Template_Neff=12.600 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--------RPLSY 77 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 77 (184) ....+++++|..++|||||++++.............................+.+||++|....... ..... T Consensus 2 ~~~~~i~l~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~ 81 (172) T 2GJ8_B 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172) T ss_dssp ---CEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEESSSCEEEEEECCCCSCCSSHHHHHHHHHHHHHH T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccEecCCCCCceeeEEEEEeeCCEEEEEEECCCccCCChHHHHHHHHHHHHHH Confidence 3467899999999999999999987654322111110000001111112346789999996644221 22345 Q sequence1 78 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184) Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184) ..++++++|+|..+..++... ..+...+.......|+++++||.|....... .+.. ... T Consensus 82 ~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~k~d~~~~~~~-------------------~~~~-~~~ 140 (172) T 2GJ8_B 82 EQADRVLFMVDGTTTDAVDPA-EIWPEFIARLPAKLPITVVRNKADITGETLG-------------------MSEV-NGH 140 (172) T ss_dssp HHCSEEEEEEETTSCCCCSHH-HHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-------------------EEEE-TTE T ss_pred hhCCEEEEEEeCCCCCCCCch-hhhHHHHHhCCCCCCEEEEEECcccCCCccc-------------------cccc-CCc Confidence 678999999999876655443 2333333333356899999999998652210 0111 125 Q sequence1 158 GYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) .++.+|++++.++.+++.++.+.+. T Consensus 141 ~~~~~s~~~~~~i~~~~~~i~~~~~ 165 (172) T 2GJ8_B 141 ALIRLSARTGEGVDVLRNHLKQSMG 165 (172) T ss_dssp EEEECCTTTCTTHHHHHHHHHHHC- T ss_pred eEEEEEcccCCCHHHHHHHHHHHhc Confidence 7889999999999999999888764
##### No 243 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2GJ8_D tRNA modification GTPase trmE; G-domain dimer, alpha-beta-sandwich, Hydrolase; HET: ALF, MSE, GDP; 1.7A {Escherichia coli BL21(DE3)} SCOP: c.37.1.8 Probab=99.58 E-value=5.7e-19 Score=116.85 Aligned_cols=156 Identities=21% Similarity=0.238 Sum_probs=99.3 Template_Neff=12.600 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--------RPLSY 77 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 77 (184) ....+++++|..++|||||++++.............................+.+||++|....... ..... T Consensus 2 ~~~~~i~l~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~ 81 (172) T 2GJ8_D 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172) T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCCSHHHHHHHHHHHHHH T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccEecCCCCCceeeEEEEEeeCCEEEEEEECCCccCCChHHHHHHHHHHHHHH Confidence 3467899999999999999999987654322111110000001111112346789999996644221 22345 Q sequence1 78 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184) Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184) ..++++++|+|..+..++... ..+...+.......|+++++||.|....... .+.. ... T Consensus 82 ~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~k~d~~~~~~~-------------------~~~~-~~~ 140 (172) T 2GJ8_D 82 EQADRVLFMVDGTTTDAVDPA-EIWPEFIARLPAKLPITVVRNKADITGETLG-------------------MSEV-NGH 140 (172) T ss_dssp HHCSEEEEEEETTSCCCCCHH-HHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-------------------EECC-SSC T ss_pred hhCCEEEEEEeCCCCCCCCch-hhhHHHHHhCCCCCCEEEEEECcccCCCccc-------------------cccc-CCc Confidence 678999999999876655443 2333333333356899999999998652210 0111 125 Q sequence1 158 GYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) .++.+|++++.++.+++.++.+.+. T Consensus 141 ~~~~~s~~~~~~i~~~~~~i~~~~~ 165 (172) T 2GJ8_D 141 ALIRLSARTGEGVDVLRNHLKQSMG 165 (172) T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHC T ss_pred eEEEEEcccCCCHHHHHHHHHHHhc Confidence 7889999999999999999888764
##### No 244 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2GJA_B tRNA modification GTPase trmE; G-domain dimer, alpha-beta-sandwich, HYDROLASE; HET: ALF, GDP; 1.85A {Escherichia coli BL21(DE3)} SCOP: c.37.1.8 Probab=99.58 E-value=5.7e-19 Score=116.85 Aligned_cols=156 Identities=21% Similarity=0.238 Sum_probs=97.8 Template_Neff=12.600 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--------RPLSY 77 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 77 (184) ....+++++|..++|||||++++.............................+.+||++|....... ..... T Consensus 2 ~~~~~i~l~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~ 81 (172) T 2GJA_B 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172) T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccEecCCCCCceeeEEEEEeeCCEEEEEEECCCccCCChHHHHHHHHHHHHHH Confidence 3467899999999999999999987654322111110000001111112346789999996644221 22345 Q sequence1 78 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184) Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184) ..++++++|+|..+..++... ..+...+.......|+++++||.|....... .+.. ... T Consensus 82 ~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~k~d~~~~~~~-------------------~~~~-~~~ 140 (172) T 2GJA_B 82 EQADRVLFMVDGTTTDAVDPA-EIWPEFIARLPAKLPITVVRNKADITGETLG-------------------MSEV-NGH 140 (172) T ss_dssp HTCSEEEEEEETTTCCCCCHH-HHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-------------------EEEE-TTE T ss_pred hhCCEEEEEEeCCCCCCCCch-hhhHHHHHhCCCCCCEEEEEECcccCCCccc-------------------cccc-CCc Confidence 678999999999876655443 2333333333356899999999998652210 0111 125 Q sequence1 158 GYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) .++.+|++++.++.+++.++.+.+. T Consensus 141 ~~~~~s~~~~~~i~~~~~~i~~~~~ 165 (172) T 2GJA_B 141 ALIRLSARTGEGVDVLRNHLKQSMG 165 (172) T ss_dssp EEEECCTTTCTTHHHHHHHHHHC-- T ss_pred eEEEEEcccCCCHHHHHHHHHHHhc Confidence 7889999999999999999888764
##### No 245 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3O47_B ADP-ribosylation factor GTPase-activating protein 1; structural genomics consortium, GTPase activation; HET: GDP; 2.8A {Homo sapiens} Probab=99.58 E-value=5.8e-19 Score=129.96 Aligned_cols=164 Identities=16% Similarity=0.247 Sum_probs=104.5 Template_Neff=10.500 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) .+.++|+++|..++|||+|++++......... ++... ...........+.+||++|.+.+...+..++..+|++++ T Consensus 163 ~~~~~i~vvG~~~~GKssli~~l~~~~~~~~~-~t~~~---~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~ 238 (329) T 3O47_B 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGF---NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329) T ss_dssp -CCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETTE---EEEEEEETTEEEEEEECC-----CCSHHHHHTTCCEEEE T ss_pred cceeEEEEEcccccCHHHHHHHhhcCCCcccC-Cccce---eEEEEEeCCEEEEEEEcCCChhhHHHHHHHhccCCEEEE Confidence 44569999999999999999999877543321 11111 111122234578899999998887778778889999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) |+|+.+..++......+...+... ....|+++++||.|+........ ... .......... ...++.+|+ T Consensus 239 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~nK~D~~~~~~~~~-~~~--------~~~~~~~~~~-~~~~~~~Sa 308 (329) T 3O47_B 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE-ITD--------KLGLHSLRHR-NWYIQATCA 308 (329) T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH-HHH--------HHTCTTCCSS-CEEEEECBT T ss_pred EEeCCCHHHHHHHHHHHHHHHhcccccCCEEEEEEeCcCCCccCCHHH-HHH--------HhChhHhcCC-CeEEEEccC Confidence 999988766665544444444322 23588999999999876322111 100 0001111111 257899999 Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184) +++.|+.+++.++.+.+.. T Consensus 309 ~~~~~v~~l~~~l~~~i~~ 327 (329) T 3O47_B 309 TSGDGLYEGLDWLSNQLRN 327 (329) T ss_dssp TTTBTHHHHHHHHHHHHC- T ss_pred CCCCCHHHHHHHHHHHHHc Confidence 9999999999998887653
##### No 246 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6WWZ_A Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit; GPCR, Chemokine, Chemokine receptor, Complex; 3.34A {Rattus norvegicus} Probab=99.58 E-value=6.3e-19 Score=124.89 Aligned_cols=176 Identities=16% Similarity=0.148 Sum_probs=58.0 Template_Neff=10.800 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) ...++++++|.+++|||+|++++.................. .........+.+||++|.+.+...+..++..++++++ T Consensus 43 ~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~il~ 120 (250) T 6WWZ_A 43 AKDVKLLLLGADNSGKSTIVKQMKIIHGGSGGSGGTTGIVE--THFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIF 120 (250) T ss_dssp TSEEEEEECCCSSSSHHHHHC----------------------------------------------------------- T ss_pred cCceeEEEEcCCCCCchHHHHHHHHHhCCCCCCCCceeeEE--EEEEECCEEEEEEEcCCCccchHHHHHhhcCccEEEE Confidence 45789999999999999999998765443111111111111 1122234578899999988777777778889999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKH-----------FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEP---VKPEEGRDMA 151 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~-----------~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 151 (184) |+|.++..++......+...... .....|+++++||+|+................. ........+. T Consensus 121 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (250) T 6WWZ_A 121 CVDLSDYDQVLHEDETTNRMHESLMDFDSICNNKFFIDTSIILFLNKKDLFGEKIKKSPLTICFPEYTGPNTYEDAAAYI 200 (250) T ss_dssp -----------CCEEECSEEECSCCHHSTSSEEESC-----CHHHHHHSSCSCEEEHHTTTSGGSTCCCSSSGGGTHHHH T ss_pred EEehhhcccccccccccchhHHHHHHHHHHHcChhhcCCeEEEEEechhHhHHHHhcCCccccCCCCCCCCCHHHHHHHH Confidence 99999866544332111111100 012689999999999976432110000000000 0000000000 Q sequence1 152 N---------RIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 152 ~---------~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) . ....+.++.+|+.++.++.++|.++.+.+++ T Consensus 201 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 241 (250) T 6WWZ_A 201 QAQFESKNRSPNKEIYCHMTCATDTNNAQVIFDAVTDIIIA 241 (250) T ss_dssp HHHHHHTCCCSSCCEEEEECCTTCCCCHHHHHHHHHHHHHH T ss_pred HHHHHHccCCCCCeEEEEEEEeCChhhHHHHHHHHHHHHHH Confidence 0 0112457899999999999999998887653
##### No 247 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4WNR_A Mb Roco2 RocCORdC 287-629 (E.C.3.6.5.2.); Roco proteins, GAD, small G-protein; HET: SO4, GDP; 2.9A {Methanosarcina barkeri} Probab=99.57 E-value=8.4e-19 Score=129.89 Aligned_cols=159 Identities=19% Similarity=0.266 Sum_probs=106.2 Template_Neff=10.900 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184) .....+++++|.+++|||||++++....+.....++..... ...+........+.+||++|++.+...+..++...+++ T Consensus 38 ~~~~~ki~l~G~~~~GKtsl~~~L~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 117 (349) T 4WNR_A 38 PLNEVKVLLVGDGEAGKTSLLKRLLGEGFDGNEHQTQGINIKKWGFKDKDKEIKVNFWDFGGQEIMHATHQFFLSKRSLY 117 (349) T ss_dssp ECCEEEEEEESSTTSSHHHHHHHHHTCCCCSCCSSCCSCEEEEEEEEETTEEEEEEEEECCHHHHHHTGGGGGCCSSSEE T ss_pred ccceEEEEEECCCCCCHHHHHHHHhCCCCCCCCCcceeeEeEEeeeecCCCeEEEEEEEcCCCcCcccceeeeecCCeEE Confidence 45678999999999999999999987765433222222111 11122223456899999999998888888888889999 Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184) Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184) ++|+|++..... ..|...+....+..|+++|+||.|......... + ..... ......++.+| T Consensus 118 llv~d~~~~~~~----~~wl~~i~~~~~~~~vilV~tk~D~~~~~~~~~---~---------~~~~~--~~~~~~~~~vs 179 (349) T 4WNR_A 118 ILVLDSRRDEKA----EYWLKHIRSFGGDSPVLVALNKIDENPSFELNR---K---------FLQEK--YPSIKGFFRIS 179 (349) T ss_dssp EEEECSSSTTCH----HHHHHHHHHHHTTCCEEEEECCTTTCTTCCCCH---H---------HHHHH--CTTEEEEEECB T ss_pred EEEEeCCChHHH----HHHHHHHHHhcCCCCEEEEEeccCCCCchHHcH---H---------HHHHH--CcccceeEEee Confidence 999999875332 334444433335789999999999875321100 0 00000 00124678899 Q sequence1 164 AKTKDGVREVFEMATRAA 181 (184) Q Consensus 164 ~~~~~~i~~~~~~~~~~~ 181 (184) ++++.++.++++.+.+.+ T Consensus 180 ~~~~~~i~~l~~~i~~~~ 197 (349) T 4WNR_A 180 CKEDRGIEGFSQKLKKEL 197 (349) T ss_dssp TTTTBSHHHHHHHHHHHH T ss_pred cCCccCHHHHHHHHHHHH Confidence 999999998888777655
##### No 248 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3TAH_A Ferrous iron uptake transporter protein; G-protein, GTPase, Iron transport, Potassium; HET: BGO, GOL; 1.85A {Streptococcus thermophilus} Probab=99.57 E-value=8.5e-19 Score=126.06 Aligned_cols=151 Identities=17% Similarity=0.200 Sum_probs=92.8 Template_Neff=9.700 Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLSY--PD 79 (184) Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~ 79 (184) ..+|+++|.+++|||||++++.+........+..+.... ..... ....+.+||+||...+.. ....++ .. T Consensus 3 ~~~I~ivG~~n~GKStL~n~l~~~~~~~~~~~~~t~~~~-~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (272) T 3TAH_A 3 MTEIALIGNPASGKTSLFNLITGHNQRVGNWPGVTVERK-SGLVK-KNKDLEIQDLPGIYSMSPYSPEEKVARDYLLSQR 80 (272) T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSCSEEE-EEEET-TEEEEEEEECCCCSCCCTTCHHHHHHHHHHHTTC T ss_pred CeEEEEECCCCCCHHHHHHHHHCCCCCcCCCCCCceeeE-EEEEe-cCCcEEEEeCCCcccCCCCCHHHHHHHHHHHhCC Confidence 578999999999999999999876542211111111111 00111 234788999999765432 123333 57 Q sequence1 80 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 159 (184) Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184) +|++++|+|.++...... +...+. ....|+++|+||+|+.......... ..+.... ..++ T Consensus 81 ~d~ii~VvD~~~~~~~~~----~~~~l~--~~~~p~ilv~NK~D~~~~~~~~~~~-------------~~l~~~~-~~~v 140 (272) T 3TAH_A 81 ADSILNVVDATNLERNLY----LTTQLI--ETGIPVTIALNMIDVLDGQGKKINV-------------DKLSYHL-GVPV 140 (272) T ss_dssp CSEEEEEEEGGGHHHHHH----HHHHHH--HTTSCEEEEEECHHHHHHTTCCCCH-------------HHHHHHH-TSCE T ss_pred CCEEEEEEeCCchHHHHH----HHHHHH--HhCCCEEEEEeCHHHhccccccccH-------------HHHHHhh-CCCE Confidence 899999999987533222 111121 1358899999999998643211100 0011111 2578 Q sequence1 160 MECSAKTKDGVREVFEMATRA 180 (184) Q Consensus 160 ~~~s~~~~~~i~~~~~~~~~~ 180 (184) +.+||+++.|++++++.+... T Consensus 141 ~~~Sa~~~~gi~~l~~~i~~~ 161 (272) T 3TAH_A 141 VATSALKQTGVDQVVKKAAHT 161 (272) T ss_dssp EECBTTTTBSHHHHHHHHHTS T ss_pred EEeecCCCcCHHHHHHHHHHh Confidence 999999999999999877664
##### No 249 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2HT6_A GTP-binding protein GEM; small G-protein, signaling protein; HET: GDP; 2.4A {Homo sapiens} Probab=99.57 E-value=8.7e-19 Score=116.07 Aligned_cols=166 Identities=25% Similarity=0.293 Sum_probs=100.5 Template_Neff=12.700 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPT-VFENYVADIEVDGKQVELALWDTAGLEDY-DRLRPLSYPDTD 81 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~~t-~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~ 81 (184) ....++|+++|.+++|||||++++........ ..+. ...........++....+.++|.+|.... ...+..+...+| T Consensus 3 ~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 82 (174) T 2HT6_A 3 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (174) T ss_dssp CCSEEEEEEECSTTSSHHHHHHHHCCC----CCCSCCCCTTEEEEEEEETTEEEEEEEECCCCCC--CTHHHHHHHHHCS T ss_pred CcceEEEEEECCCCCChHHHHHHHhccccccccccccccccEEEEEEEeCCcEEEEEEEEcCCCCcccHHHHHhhcccCC Confidence 45678999999999999999999986433211 1111 11111222223333455677787764422 223445556789 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184) ++++++++++..++......+...... .....|+++|+||.|+....... .......+... ...++ T Consensus 83 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~d~~~~~~~~------------~~~~~~~~~~~-~~~~~ 149 (174) T 2HT6_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVS------------VSEGRACAVVF-DCKFI 149 (174) T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSC------------HHHHHHHHHHH-TCEEE T ss_pred EEEEEEECCChhhHHHHHHHHHHHHHHcCCCCCCEEEEEeCCccccCceec------------hHHHHHHHHHc-CCeEE Confidence 999999998866665554333332221 12368999999999987632210 01111111122 26788 Q sequence1 161 ECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) ++|++++.++.+++.++.+.+.+ T Consensus 150 ~~s~~~~~~i~~~~~~l~~~~~~ 172 (174) T 2HT6_A 150 ETSAAVQHNVKELFEGIVRQVRL 172 (174) T ss_dssp ECBTTTTBSHHHHHHHHHHHHHH T ss_pred EeccccCCCHHHHHHHHHHHHhc Confidence 99999999999999999887754
##### No 250 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3B1V_A Ferrous iron uptake transporter protein; G protein, iron transport, GTPase; HET: GGM; 1.85A {Streptococcus thermophilus} Probab=99.57 E-value=9.9e-19 Score=125.67 Aligned_cols=153 Identities=16% Similarity=0.200 Sum_probs=92.9 Template_Neff=9.900 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLSY--P 78 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~ 78 (184) ...+|+++|.+|+|||||++++.+........+....... .... .....+.+||+||...... .+..++ . T Consensus 2 ~~~~i~ivG~~~~GKStL~n~l~~~~~~~~~~~~~t~~~~-~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (272) T 3B1V_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERK-SGLV-KKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272) T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCE-EEEC-TTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceeeee-EEEE-eeCCCeEEEeCCCCccCCCCCHHHHHHHHHHHhc Confidence 3578999999999999999999876542211111111110 0011 1234788999999754322 123333 5 Q sequence1 79 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFG 158 (184) Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184) .+|++++|+|.++....... ...+.. ...|+++|+||+|+.......... ..+.... ..+ T Consensus 80 ~~d~il~vvD~~~~~~~~~~----~~~l~~--~~~p~ilv~NK~D~~~~~~~~~~~-------------~~l~~~~-~~~ 139 (272) T 3B1V_A 80 RADSILNVVDATNLERNLYL----TTQLIE--TGIPVTIALNMIDVLDGQGKKINV-------------DKLSYHL-GVP 139 (272) T ss_dssp CCSEEEEEEEGGGHHHHHHH----HHHHHH--TCSCEEEEEECHHHHHHTTCCCCH-------------HHHHHHH-TSC T ss_pred CCCEEEEEeeCCchHHHHHH----HHHHHH--hCCCEEEEEeChHHhccccccccH-------------HHHHHHh-CCC Confidence 68999999999875433222 111211 358999999999998642211100 0011111 257 Q sequence1 159 YMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 159 ~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) ++.+||+++.|+.+++.++.+.+ T Consensus 140 ~~~~Sa~~~~gi~~l~~~i~~~~ 162 (272) T 3B1V_A 140 VVATSALKQTGVDQVVKKAAHTT 162 (272) T ss_dssp EEECBTTTTBSHHHHHHHHHHSC T ss_pred eEEeecCCCcCHHHHHHHHHHhc Confidence 88999999999999998877653
##### No 251 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5KTY_A Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GDP; 2.522A {Homo sapiens} Probab=99.57 E-value=1e-18 Score=132.69 Aligned_cols=161 Identities=16% Similarity=0.173 Sum_probs=104.3 Template_Neff=10.800 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN---YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) .....+|+++|.+++|||+|++++....+........... ....+...+....+.+||++|++.+.. ++..++ T Consensus 239 ~~~~~~i~vvG~~~~GKt~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~----~~~~~d 314 (424) T 5KTY_A 239 QRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESEFLTE----AEIICD 314 (424) T ss_dssp CCSEEEEEEECSTTSSHHHHHHHHTTCCHHHHTTCCTTTCCSEEEEEEEETTEEEEEEEEEECCCSCCCS----GGGCSS T ss_pred CceEEEEEEEcCCCCCHHHHHHHHhCCccccccCccccCCceeEEEEEEECCeEEEEEEEEcCChHhhHH----HHhhCC Confidence 4557899999999999999999998765433221111100 011222334456788999999764432 456799 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYM 160 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (184) ++++|+|+++..++......+...... ...|+++|+||+|+...... .......++...+. ..++ T Consensus 315 ~vvlv~d~~~~~s~~~~~~~~~~~~~~--~~~piivv~nK~D~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 380 (424) T 5KTY_A 315 VVCLVYDVSNPKSFEYCARIFKQHFMD--SRIPCLIVAAKSDLHEVKQE------------YSISPTDFCRKHKMPPPQA 380 (424) T ss_dssp EEEEEEETTCTTHHHHHHHHCCCCCTT--CSSCEEEEEECTTSCCCCCC------------SSSCHHHHHHHTTCCCCEE T ss_pred EEEEEeeCCChhHHHHHHHHHHHhccc--CCCCEEEEEECCCcchhccc------------ccCCHHHHHHHcCCCCCee Confidence 999999999877776654333332221 47899999999998763211 01112222333222 2356 Q sequence1 161 ECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) .+|++++.|+.++|.++.+.++. T Consensus 381 ~~Sa~~~~~i~~~~~~l~~~~~~ 403 (424) T 5KTY_A 381 FTCNTADAPSKDIFVKLTTMAMY 403 (424) T ss_dssp CCSCCSSSCCCHHHHHHHHHHHS T ss_pred eecCCCCCChHHHHHHHHHHHhC Confidence 89999999999999998887653
##### No 252 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6VS4_A Small COPII coat GTPase SAR1; SSGCID, COPII coat GTPase SAR1; HET: PEG, GDP; 2.4A {Encephalitozoon cuniculi (strain GB-M1)} Probab=99.57 E-value=1e-18 Score=121.81 Aligned_cols=172 Identities=13% Similarity=0.139 Sum_probs=107.7 Template_Neff=11.100 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) .+..+|+++|++++|||+|++++........ .++.. ..... .......+.+||+||...+...+..++..+|++++ T Consensus 37 ~~~~~i~i~G~~~~GKssli~~l~~~~~~~~-~~t~~-~~~~~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 112 (225) T 6VS4_A 37 GKPSSILFLGIDNAGKTTLVNKLKSDSTDVY-MPTHH-PSTSY--IEIGNLKAQVIDLGGHTAARLAWRDYFYDCHGIVF 112 (225) T ss_dssp SSCEEEEEEEETTSSHHHHHHHHSCTTTCCE-ECCSS-TTEEE--EEETTEEEEEEEECCSCGGGGGGGGGGTTCCEEEE T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCcc-cCccC-CceEE--EEECCEEEEEEECCcchHHHHHHHHHhccCCEEEE Confidence 5678999999999999999999886543211 11111 11111 11233578899999988777777777789999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD---MANRIGAFGYMEC 162 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 162 (184) |+|+++..++......+...... ....|+++++||.|.......................... .......+.++.+ T Consensus 113 v~d~~~~~~~~~~~~~l~~~~~~-~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (225) T 6VS4_A 113 IVDVHDVERFQEVREAYETVLSL-EKRAPVVVLMNKIDLEGHTPETAEADYQWKSWLSQETGIENQEDPERGQVVKIFYV 191 (225) T ss_dssp EEESSCGGGHHHHHHHHHHHHHH-CSSSCEEEEEECGGGGTCCHHHHHTCHHHHHHHHHHHCCCCBCCGGGSSCEEEEEC T ss_pred EEECCChhHHHHHHHHHHHHHHh-cCCCCEEEEEecCcCCCCCccchHHHHHHHHHHHHHhCCccccCccccceEEEEEE Confidence 99999876665554434333322 2468999999999997642221111100000000000000 0001123568899 Q sequence1 163 SAKTKD------GVREVFEMATRAAL 182 (184) Q Consensus 163 s~~~~~------~i~~~~~~~~~~~~ 182 (184) |+.+++ |+.++|.|+.+.+. T Consensus 192 s~~~~~~~~~~~gi~~~~~~l~~~~~ 217 (225) T 6VS4_A 192 TITSGSANSITGPLARAFKWLEAMIT 217 (225) T ss_dssp CTTSGGGGCTTSHHHHHHHHHHHHHH T ss_pred EeecCCcccCChhHHHHHHHHHHHHh Confidence 999999 99999999887664
##### No 253 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2WJI_A FERROUS IRON TRANSPORT PROTEIN B; MEMBRANE G-PROTEINS, FERROUS IRON TRANSPORT; HET: GNP; 1.903A {METHANOCALDOCOCCUS JANNASCHII} Probab=99.56 E-value=1.1e-18 Score=115.57 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=94.0 Template_Neff=11.700 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLSY--P 78 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~ 78 (184) +.++++++|++++|||+|++++.+........++...... ..........+.+||++|...+.. ....+. . T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 80 (165) T 2WJI_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKK-EGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165) T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCC-EEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHCCCCC T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCCccCCCCCccccce-EEEEEECCeEEEEEECCCCccCCccchHHHHHHHHHHcc Confidence 4689999999999999999999876644322222211111 111122234688999999765432 222222 2 Q sequence1 79 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFG 158 (184) Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184) .++++++++|......... +...... ...|+++|+||+|+......... ...++...+ .. T Consensus 81 ~~~~v~~v~d~~~~~~~~~----~~~~~~~--~~~~~ivv~~k~D~~~~~~~~~~-------------~~~~~~~~~-~~ 140 (165) T 2WJI_A 81 KPDLVVNIVDATALERNLY----LTLQLME--MGANLLLALNKMDLAKSLGIEID-------------VDKLEKILG-VK 140 (165) T ss_dssp CCSEEEEEEETTCHHHHHH----HHHHHHH--TTCCEEEEEECHHHHHHTTCCCC-------------HHHHHHHHT-SC T ss_pred CCCEEEEEEechHHHHHHH----HHHHHHH--cCCcEEEEEEcHHHhhhcCceec-------------HHHHHHHHC-Ce Confidence 4678888888876433221 2222211 25789999999999764322110 111122222 57 Q sequence1 159 YMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 159 ~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ++.+|+.++.++.+++.++.+.+. T Consensus 141 ~~~~s~~~~~~v~~~~~~l~~~~~ 164 (165) T 2WJI_A 141 VVPLSAAKKMGIEELKKAISIAVK 164 (165) T ss_dssp EEECBGGGTBSHHHHHHHHHHHTT T ss_pred EEEeecccccCHHHHHHHHHHHcc Confidence 899999999999999998887653
##### No 254 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2LKD_A Translation initiation factor IF-2; TRANSLATION; HET: GDP; NMR {Geobacillus stearothermophilus} Probab=99.56 E-value=1.3e-18 Score=116.63 Aligned_cols=167 Identities=22% Similarity=0.263 Sum_probs=101.2 Template_Neff=11.800 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) +...+..+|+++|..++|||||++.+................. ...........+.+||++|.+.+...+..++..+|+ T Consensus 3 ~~~~~~~~i~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 81 (178) T 2LKD_A 3 HMVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHI-GAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDI 81 (178) T ss_dssp CCCCCCCCCEEEECTTSCTTHHHHHTTTTSSCSSSSCBSSSSS-CBCBCCSSSSCCBCSCBTTBCSSSCCSSSTTCSSCC T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhcCCCChhhcCCcceec-eEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCE Confidence 4556788999999999999999999986544322211111111 111111123467899999988777777777788999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184) +++|+|.++....... ..+.. .. ....|+++++||.|+....... ....... ...... .......++.+ T Consensus 82 ii~v~d~~~~~~~~~~-~~~~~-~~--~~~~~~i~v~nk~D~~~~~~~~-~~~~~~~----~~~~~~--~~~~~~~~~~~ 150 (178) T 2LKD_A 82 VILVVAADDGVMPQTV-EAINH-AK--AANVPIIVAINKMDKPEANPDR-VMQELME----YNLVPE--EWGGDTIFCKL 150 (178) T ss_dssp EEEEEETTTCSCHHHH-HHHHH-HH--HHTCCEEEEEECTTSTTCCHHH-HHHHHHH----TTCCCT--TTTSSEEEEEC T ss_pred EEEEEECCCCCChhHH-HHHHH-HH--HcCCCEEEEEECcCCCCCCHHH-HHHHHHH----cCCChh--hhCCCceEEEc Confidence 9999998764322221 11111 11 2367899999999997542111 1100000 000000 00012568889 Q sequence1 163 SAKTKDGVREVFEMATRAA 181 (184) Q Consensus 163 s~~~~~~i~~~~~~~~~~~ 181 (184) |++++.|+.+++.++...+ T Consensus 151 S~~~~~~i~~~~~~i~~~~ 169 (178) T 2LKD_A 151 SAKTKEGLDHLLEMILLVS 169 (178) T ss_dssp CTTTTCHHHHHHHHHHHHH T ss_pred ccccCccHHHHHHHHHHHH Confidence 9999999999999887654
##### No 255 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4C0L_A MITOCHONDRIAL RHO GTPASE (E.C.3.6.5.-); HYDROLASE, MITOCHONDRIAL TRANSPORT, CALCIUM-BINDING GTPASE; HET: GDP, SO4; 3.0A {DROSOPHILA MELANOGASTER} Probab=99.56 E-value=1.3e-18 Score=132.17 Aligned_cols=161 Identities=19% Similarity=0.258 Sum_probs=106.4 Template_Neff=10.600 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) ..+..+|+++|.+++|||+|++++....+.... ...........+...+....+.+||++|...+...+. ++..++ T Consensus 243 ~~~~~~i~iiG~~~~GKtsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~d~~g~~~~~~~~~-~~~~~d 321 (423) T 4C0L_A 243 SRSVYKCHVIGPKGSGKTGMCRGFLVEDMHKLIGKEFKTNVVNCINSVQVYGQEKHLILRDIDVRHALDPLQP-QEVNCD 321 (423) T ss_dssp CCCEEEEEEEEETTSSCHHHHHTTTCSCGGGGSSCCCCSCCSCEEEEEEETTEEEEEEEEEEEESSTTCCCCH-HHHCSS T ss_pred CCeEEEEEEECCCCCChhHHHHHHhhcchhhhcCCccCCCceeeeeEEEECCeEEEEEEEEcCcccccccccc-ccCCCC Confidence 356789999999999999999999876432211 0111111111222334455678999999887766655 667899 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184) ++++|+|+.+..++......+..... ....|+++|+||.|+...... .......++...+...+++ T Consensus 322 ~vi~v~D~~~~~s~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 387 (423) T 4C0L_A 322 VACLVYDSSNPRSFEYVARIYIKYYA--ESKIPVMIVGTKCDMDERRQD------------YLMQPSEFCDKYKLLPPHL 387 (423) T ss_dssp EEEEEEETTCTTTHHHHHHHCCCCCT--TCSSCEEEEEECTTSCCCCCS------------SSSCHHHHHHHTTCCCCEE T ss_pred EEEEEeeCCChhHHHHHHHHHHHHhc--cCCCCEEEEEeCCCcchhhcc------------cccCHHHHHHHcCCCCCEE Confidence 99999999987666665444433332 247899999999999863211 0111222333333367899 Q sequence1 162 CSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~ 182 (184) +|+++ |+.+++..+...++ T Consensus 388 ~Sa~~--~v~~l~~~i~~~~~ 406 (423) T 4C0L_A 388 FSLKT--NKKELYTKLATMAA 406 (423) T ss_dssp ECTTT--CCTHHHHHHHHHHH T ss_pred eeCCC--ChHHHHHHHHHHHh Confidence 99998 89999998887664
##### No 256 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2Q3F_A Ras-related GTP-binding protein D; Structural Genomics, GTP-binding, RRAGD, Structural; HET: MSE, GNP; 2.1A {Homo sapiens} Probab=99.56 E-value=1.3e-18 Score=116.72 Aligned_cols=168 Identities=13% Similarity=0.226 Sum_probs=99.2 Template_Neff=12.000 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVD-GKQVELALWDTAGLEDYDRLR---PLSYPDT 80 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~---~~~~~~~ 80 (184) .+.++|+++|..++|||+|++++.. .+........... ........ +....+.+||++|++.+.... ..++..+ T Consensus 2 ~~~~~i~~~G~~~~GKs~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 80 (181) T 2Q3F_A 2 EVKPRILLMGLRRSGKSSIQKVVFH-KMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQIDFFDPTFDYEMIFRGT 80 (181) T ss_dssp -CCCEEEEEESTTSSHHHHHHHHHH-CCCGGGGGGCCCCCSCEEEEECSCSSCCEEEEECCCCCSCCCTTSCHHHHHHTE T ss_pred CCCCeEEEEcCCCCCHHHHHHHHhc-CCCcccccccCCCcceeeEecCCCCceeEEEEECCCChhhcCccCCHHHHhhcC Confidence 3568999999999999999999886 3322111100000 00011111 234678899999987665443 5677889 Q sequence1 81 DVILMCFSIDSPDSLENIPEKWTPEVKH---FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR---I 154 (184) Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 154 (184) |++++|+|.++. ++... ..+...+.. .....|+++++||.|+............ ........++.. . T Consensus 81 ~~~i~v~d~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~i~v~~k~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 153 (181) T 2Q3F_A 81 GALIFVIDSQDD-YMEAL-ARLHLTVTRAYKVNTDINFEVFIHKVDGLSDDHKIETQRD-----IHQRANDDLADAGLEK 153 (181) T ss_dssp EEEEEEEETTSC-CHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCTTHHHHHHHH-----HHHHHHHHHHHTTCTT T ss_pred CEEEEEEeCCCh-HHHHH-HHHHHHHHHHHHHCCCCEEEEEEEcccCCChHhHHHHHHH-----HHHHHHHHhhhhcccc Confidence 999999999874 33322 222222221 1236899999999998763211110000 001111111111 0 Q sequence1 155 GAFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 155 ~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ....++.+|++ +.|+.++++++...++ T Consensus 154 ~~~~~~~~S~~-~~~v~~~~~~~~~~~~ 180 (181) T 2Q3F_A 154 IHLSFYLTSIY-DHSIFEAFSKVVQKLI 180 (181) T ss_dssp SCEEEEEECTT-STHHHHHHHHHHHTTC T ss_pred CceEEEEeccc-chhHHHHHHHHHHHHC Confidence 12568889999 9999999999887664
##### No 257 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4DHE_A Probable GTP-binding protein EngB; melioidosis, RAS-like GTPase, cell division; 2.2A {Burkholderia thailandensis} Probab=99.56 E-value=1.3e-18 Score=121.36 Aligned_cols=168 Identities=13% Similarity=0.106 Sum_probs=98.6 Template_Neff=10.500 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEV--YVP-TVFENYVADIEVDGKQVELALWDTAGLEDY----------DRL 72 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~--~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~~ 72 (184) .+.++|+++|..++|||||++++........ ..+ ++.......... .....+.+||++|.... ... T Consensus 27 ~~~~~i~lvG~~~~GKssl~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ 105 (223) T 4DHE_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGP-AAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223) T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESC-TTSCSEEEEECCCCCSSCCCSTHHHHHHHH T ss_pred CCCCEEEEEeCCCCCHHHHHHHHhcCCCcccccCCCCccceEEEEEcCC-CCCCcEEEEecCCCcccCCChHHHHHHHHH Confidence 5678999999999999999999987653211 111 111111111111 12357899999997643 222 Q sequence1 73 RPLSYPD---TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 149 (184) Q Consensus 73 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (184) ...++.. ++++++|+|+++...... ..+...+.. ...|+++|+||+|+................. ..... T Consensus 106 ~~~~~~~~~~~~~iilvvD~~~~~~~~~--~~~~~~l~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~l---~~~~~ 178 (223) T 4DHE_A 106 LSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSL---DAYRD 178 (223) T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHH---HHHHH T ss_pred HHHHHhhCccccEEEEEeeCCCCCCHHH--HHHHHHHHH--hCCCEEEEEeCHhhCCHHHHHHHHHHHHHHH---HHHHH Confidence 3333444 889999999987433222 223333322 2589999999999986432211111111000 00000 Q sequence1 150 MANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 150 ~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ........++++|+.++.|+.+++.++.+.+. T Consensus 179 -~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 210 (223) T 4DHE_A 179 -AGYAGKLTVQLFSALKRTGLDDAHALIESWLR 210 (223) T ss_dssp -HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC T ss_pred -ccccCCceEEEeeCCcCCCHHHHHHHHHHHhc Confidence 00112367899999999999999999887664
##### No 258 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2WJJ_B FERROUS IRON TRANSPORT PROTEIN B; METAL TRANSPORT, MEMBRANE G-PROTEINS, FERROUS; HET: MSE, GDP; 2.405A {METHANOCALDOCOCCUS JANNASCHII} Probab=99.56 E-value=1.4e-18 Score=115.26 Aligned_cols=157 Identities=14% Similarity=0.122 Sum_probs=96.3 Template_Neff=11.900 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLSYP- 78 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~- 78 (184) ...++|+++|++|+|||||++++..........+.....+ ...........+.+||++|...+.. .+..++. T Consensus 2 ~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~ 80 (168) T 2WJJ_B 2 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEK-KEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIIN 80 (168) T ss_dssp CCEEEEEEECSTTSSHHHHHHHHSCSCEEEEECTTSCCEE-EEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHH T ss_pred CCCceEEEECCCCCCHHHHHHHHhCCCCCcCCCCCcccee-eeeEeEECCeeEEEEEcCCCcccCccchHHHHHHHHHHh Confidence 3468999999999999999999987654432222211111 1111112234688999999765432 2233332 Q sequence1 79 -DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184) Q Consensus 79 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184) .++++++++|..+...... +...... ...|+++|+||+|+........ ....++...+ . T Consensus 81 ~~~~~i~~~~d~~~~~~~~~----~~~~~~~--~~~~~i~v~nk~D~~~~~~~~~-------------~~~~l~~~~~-~ 140 (168) T 2WJJ_B 81 EKPDLVVNIVDATALERNLY----LTLQLME--MGANLLLALNKMDLAKSLGIEI-------------DVDKLEKILG-V 140 (168) T ss_dssp HCCSEEEEEEEGGGHHHHHH----HHHHHHH--TTCCEEEEEECHHHHHHTTCCC-------------CHHHHHHHSC-S T ss_pred cCCCEEEEEEechHHhhhHH----HHHHHHH--cCCCEEEEEEcHHHhhhcCccc-------------cHHHHHHHHC-C Confidence 4678888888776433221 1111211 2578999999999976432111 0111222222 5 Q sequence1 158 GYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) .++++|+.++.++.+++.++.+.+.+ T Consensus 141 ~~~~~s~~~~~~i~~~~~~l~~~~~~ 166 (168) T 2WJJ_B 141 KVVPLSAAKKMGIEELKKAISIAVKD 166 (168) T ss_dssp CEEECCTTTTTTHHHHHHHHHHHTTC T ss_pred eEEEeecccCCCHHHHHHHHHHHhhc Confidence 78999999999999999998887653
##### No 259 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4DHE_B Probable GTP-binding protein EngB; melioidosis, RAS-like GTPase, cell division; 2.2A {Burkholderia thailandensis} Probab=99.56 E-value=1.4e-18 Score=121.24 Aligned_cols=168 Identities=13% Similarity=0.081 Sum_probs=96.1 Template_Neff=10.500 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPE---VYVPTVFENYVADIEVDGKQVELALWDTAGLEDY----------DRL 72 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~~ 72 (184) ...++|+++|..++|||||++++....... ...++........... .....+.+||++|.... ..+ T Consensus 27 ~~~~~i~ivG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ 105 (223) T 4DHE_B 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGP-AAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223) T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSCCC--------CEEEEEESC-TTSCSEEEEECCCC---------CHHHHHH T ss_pred CCCCEEEEEeCCCCcHHHHHHHHhcCCCcccCCCCCcccceEEEEEeCC-CCCCcEEEEeCCCCcccCCChHHHHHHHHH Confidence 567899999999999999999998765321 1111111111111111 12357889999998653 222 Q sequence1 73 RPLSYPD---TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 149 (184) Q Consensus 73 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (184) ...++.. ++++++|+|+.+...... ..+...+.. ...|+++|+||+|+...........+..... ..... T Consensus 106 ~~~~~~~~~~~~~ii~v~D~~~~~~~~~--~~~~~~l~~--~~~~iilv~nK~D~~~~~~~~~~~~~~~~~l---~~~~~ 178 (223) T 4DHE_B 106 LSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSL---DAYRD 178 (223) T ss_dssp HHHHHHHCTTEEEEEEEEETTSCSCHHH--HHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHH---HHHHH T ss_pred HHHHHhhCcccceEEEEEeCCCCCCHHH--HHHHHHHHH--hCCCEEEEEeCHHhCCHHHHHHHHHHHHHHH---HHHHh Confidence 3334444 889999999986432221 223333322 2589999999999986532211111111000 00000 Q sequence1 150 MANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 150 ~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ........++++|+.++.|+.++|.++...+. T Consensus 179 -~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 210 (223) T 4DHE_B 179 -AGYAGKLTVQLFSALKRTGLDDAHALIESWLR 210 (223) T ss_dssp -TTCCSCEEEEECBTTTTBSHHHHHHHHHHHHC T ss_pred -ccccCCceEEEeeCCcCCCHHHHHHHHHHHhc Confidence 00112367999999999999999999877654
##### No 260 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3LLU_A Ras-related GTP-binding protein C; Structural Genomics Consortium, SGC, GTP-binding; HET: GNP; 1.4A {Homo sapiens} Probab=99.56 E-value=1.5e-18 Score=118.53 Aligned_cols=168 Identities=13% Similarity=0.223 Sum_probs=96.9 Template_Neff=11.200 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEV-DGKQVELALWDTAGLEDYDRLR---PLSYPD 79 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~---~~~~~~ 79 (184) .....+|+++|..++|||+|++++.. ............. ....... ++....+.+||++|++.+.... ..++.. T Consensus 17 ~~~~~~i~v~G~~~~GKssli~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 95 (196) T 3LLU_A 17 QGSKPRILLMGLRRSGKSSIQKVVFH-KMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG 95 (196) T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHS-CCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT T ss_pred CCCCCeEEEECCCCCCHHHHHHHHhc-cCCcccccccccceeeEEcccCCCCCeeEEEEECCCCccccCccCCHHHHhcc Confidence 45678999999999999999999886 3221111100000 0111111 1245678999999987765443 667788 Q sequence1 80 TDVILMCFSIDSP--DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR---- 153 (184) Q Consensus 80 ~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 153 (184) ++++++|+|+.+. .++......+.. ........|+++++||.|+............ ........++.. T Consensus 96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~-~~~~~~~~~~v~v~~k~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 169 (196) T 3LLU_A 96 TGALIYVIDAQDDYMEALTRLHITVSK-AYKVNPDMNFEVFIHKVDGLSDDHKIETQRD-----IHQRANDDLADAGLEK 169 (196) T ss_dssp CSEEEEEEETTSCCHHHHHHHHHHHHH-HHHHCTTCEEEEEEECGGGSCHHHHHHHHHH-----HHHHHHHHHHHTTCTT T ss_pred CCEEEEEEeCCCchHHHHHHHHHHHHH-HHHhCCCCeEEEEEEccCCCChHHHHHHHHH-----HHHHHHHHhhhhhhhh Confidence 9999999999875 222221111111 1112246899999999999873211110000 001111111111 Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) .+ ..++++|++ +.|+.++|+++++.+ T Consensus 170 ~~-~~~~~~S~~-~~nv~~~~~~l~~~~ 195 (196) T 3LLU_A 170 LH-LSFYLTSIY-DHSIFEAFSKVVQKL 195 (196) T ss_dssp SC-EEEEEECTT-STHHHHHHHHHHHHT T ss_pred cC-cEEEEeccc-cccHHHHHHHHHHHh Confidence 22 568889998 689999999887765
##### No 261 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4C0K_A MITOCHONDRIAL RHO GTPASE (E.C.3.6.5.-); HYDROLASE, MITOCHONDRIAL TRANSPORT, CALCIUM-BINDING GTPASE; HET: SO4; 2.801A {DROSOPHILA MELANOGASTER} Probab=99.56 E-value=1.5e-18 Score=131.66 Aligned_cols=161 Identities=19% Similarity=0.258 Sum_probs=104.9 Template_Neff=10.900 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) .....+|+++|.+++|||||++++....+.... ...........+...+....+.+||++|...+...+. ++..++ T Consensus 243 ~~~~~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~-~~~~~~ 321 (423) T 4C0K_A 243 SRSVYKCHVIGPKGSGKTGMCRGFLVEDMHKLIGKEFKTNVVNCINSVQVYGQEKHLILRDIDVRHALDPLQP-QEVNCD 321 (423) T ss_dssp CCCEEEEEEECCTTSCHHHHHHTTSCSCCTTSTTCCCSSCCSEEEEEEEETTEEEEEEEEECCCCCSSSCCCH-HHHCSS T ss_pred CCeEEEEEEECCCCCChhHHHHHHhccchhhhcCCcccCCceeeEEEEEECCeEEEEEEEEcCccccccccch-hhcCCC Confidence 355789999999999999999999865432111 0010111111223334455678999999877665554 567899 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184) ++++|+|+++..++......+..... ....|+++|+||.|+...... .......++...+...+++ T Consensus 322 ~vi~v~d~~~~~s~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 387 (423) T 4C0K_A 322 VACLVYDSSNPRSFEYVARIYIKYYA--ESKIPVMIVGTKCDMDERRQD------------YLMQPSEFCDKYKLLPPHL 387 (423) T ss_dssp EEEEEEESSCTTTHHHHHHHCCCCCT--TSSSCEEEEEECTTSCCCCCS------------SSSCHHHHHHHTTCCCCEE T ss_pred EEEEEeeCCChHHHHHHHHHHHHHhc--cCCCCEEEEEeCCCCchhhcc------------cccCHHHHHHHcCCCCCEE Confidence 99999999987776665444433332 246899999999999753211 0111222333333367889 Q sequence1 162 CSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~ 182 (184) +|+++ |+.++++.+...+. T Consensus 388 ~Sa~~--~v~~l~~~l~~~~~ 406 (423) T 4C0K_A 388 FSLKT--NKKELYTKLATMAA 406 (423) T ss_dssp CCTTS--CCCHHHHHHHHHHH T ss_pred eeCCC--ChHHHHHHHHHHHc Confidence 99998 88999988877654
##### No 262 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5KSO_A Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GDP; 2.25A {Homo sapiens} Probab=99.55 E-value=1.5e-18 Score=117.61 Aligned_cols=161 Identities=16% Similarity=0.170 Sum_probs=101.6 Template_Neff=11.600 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF--EN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDT 80 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~--~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 80 (184) ......+|+++|.+++|||+|++++.............. .. ........+....+.+||++|...+.. ++..+ T Consensus 4 ~~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~----~~~~~ 79 (190) T 5KSO_A 4 TQRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESEFLTE----AEIIC 79 (190) T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHTTCCHHHHHHCCCSSCCSEEEEEEEETTEEEEEEEEEECCCSCCCH----HHHCS T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhCCCCCCccccceeeeeeEEEEEEEcCCcEEEEEEEeCCChHHHHH----HhccC Confidence 345678999999999999999999987654322111100 00 011122233456778999998764432 44678 Q sequence1 81 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGY 159 (184) Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 159 (184) |++++|+|.++..++......+...... ...|+++++||.|+....... ......++...+. ..+ T Consensus 80 d~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~~k~D~~~~~~~~------------~~~~~~~~~~~~~~~~~ 145 (190) T 5KSO_A 80 DVVCLVYDVSNPKSFEYCARIFKQHFMD--SRIPCLIVAAKSDLHEVKQEY------------SISPTDFCRKHKMPPPQ 145 (190) T ss_dssp SEEEEEEETTCTTHHHHHHHHHHHHTTT--SCCCEEEEEECTTSCCCCCSS------------SSCHHHHHHHTTCCCCE T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhC--CCCCEEEEEecccCCcccCCC------------HHHHHHHHHHhCCCccE Confidence 9999999999877666654333322222 478999999999987632110 0111122222221 234 Q sequence1 160 MECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 160 ~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) +.+|++++.++.++++++.+.+. T Consensus 146 ~~~s~~~~~~i~~~~~~l~~~~~ 168 (190) T 5KSO_A 146 AFTCNTADAPSKDIFVKLTTMAM 168 (190) T ss_dssp ECCCCCSSSCCCHHHHHHHHHHH T ss_pred EEeeCCCCCCHHHHHHHHHHHHc Confidence 88999999999999998887654
##### No 263 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2WJG_A FERROUS IRON TRANSPORT PROTEIN B; MEMBRANE G-PROTEINS, FERROUS IRON TRANSPORT; HET: GDP; 2.2A {METHANOCALDOCOCCUS JANNASCHII} Probab=99.55 E-value=1.5e-18 Score=117.59 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=97.6 Template_Neff=11.300 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLS 76 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~ 76 (184) ++..+.++++++|.+|+|||||++++..........+..... ............+.+||++|...+.. .+..+ T Consensus 2 ~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (188) T 2WJG_A 2 GSHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVE-KKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDY 80 (188) T ss_dssp CCCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCE-EEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHH T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCccce-eEeceEEECCEEEEEEeCCCccccChHHHHHHHHHHH Confidence 455677999999999999999999998765432222111111 11111122235688999999764432 22222 Q sequence1 77 Y--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI 154 (184) Q Consensus 77 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184) . ..++++++++|..+....... ...+.. ...|+++|+||.|+......... ...++... T Consensus 81 ~~~~~~~~ii~v~d~~~~~~~~~~----~~~~~~--~~~~~i~v~~k~D~~~~~~~~~~-------------~~~~~~~~ 141 (188) T 2WJG_A 81 IINEKPDLVVNIVDATALERNLYL----TLQLME--MGANLLLALNKMDLAKSLGIEID-------------VDKLEKIL 141 (188) T ss_dssp HHHHCCSEEEEEEEGGGHHHHHHH----HHHHHT--TTCCEEEEEECHHHHHHTTCCCC-------------HHHHHHHH T ss_pred HhhCCCCEEEEEeecccchhHHHH----HHHHHH--cCCCEEEEeehHHhCCHHHHHHH-------------HHHHHHHh Confidence 2 346788999888765433222 222211 25789999999999764321110 11112222 Q sequence1 155 GAFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 155 ~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) + ..++.+|+.++.|+.+++.++.+.+. T Consensus 142 ~-~~~~~~s~~~~~~~~~~~~~i~~~~~ 168 (188) T 2WJG_A 142 G-VKVVPLSAAKKMGIEELKKAISIAVK 168 (188) T ss_dssp T-SCEEECBGGGTBSHHHHHHHHHHHHT T ss_pred C-CCEEEeecCCCCCHHHHHHHHHHHHH Confidence 2 57899999999999999999887764
##### No 264 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5KU1_A Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GDP; 2.501A {Homo sapiens} Probab=99.55 E-value=1.6e-18 Score=131.59 Aligned_cols=160 Identities=16% Similarity=0.198 Sum_probs=101.3 Template_Neff=10.900 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-N-Y-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~-~-~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) .....+|+++|.+++|||+|++++....+.......... . . ...+...+....+.+||++|++.+.. ++..+| T Consensus 239 ~~~~~~i~i~G~~~~GKt~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~----~~~~~d 314 (424) T 5KU1_A 239 QRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESEFLTE----AEIICD 314 (424) T ss_dssp CCSEEEEEEECCTTSSHHHHHHHHTTCCHHHHTTSCGGGCCSEEEEEEEETTEEEEEEEEEECCCC--------GGGCCS T ss_pred CCeEEEEEEEcCCCCChHHHHHHHhCCccccccccccccCceEEEEEEEECCEEEEEEEEEcCcchhhHH----HHhhCC Confidence 456789999999999999999999877654322111110 0 0 11222334456788999999765442 456799 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYM 160 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (184) ++++|+|+++..++......+...... ...|+++|+||+|+...... .......++...+. ..++ T Consensus 315 ~vi~v~d~~~~~s~~~~~~~~~~~~~~--~~~pvivv~nk~D~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 380 (424) T 5KU1_A 315 VVCLVYDVSNPKSFEYCARIFKQHFMD--SRIPCLIVAAKSDLHEVKQE------------YSISPTDFCRKHKMPPPQA 380 (424) T ss_dssp EEEEEEETTCTTTHHHHHHHCCCCCTT--CSSCEEEEEECTTSCCCCCC------------SSSCHHHHHHHTTCCCCEE T ss_pred EEEEEecCCChHHHHHHHHHHHHhccc--CCCCEEEEEECCCchhhhhh------------ccCCHHHHHHHcCCCCCee Confidence 999999999876665553333222221 46899999999998763211 01111222222221 2356 Q sequence1 161 ECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~~ 182 (184) .+|++++.|+.++|.++.+.++ T Consensus 381 ~~sa~~~~~i~~~~~~l~~~~~ 402 (424) T 5KU1_A 381 FTCNTADAPSKDIFVKLTTMAM 402 (424) T ss_dssp CCSCCSSSCCCHHHHHHHHHHH T ss_pred eecCCCCCCHHHHHHHHHHHHh Confidence 8999999999999999888764
##### No 265 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4NON_A Ferrous iron uptake transporter protein; G protein, iron transport, GTPase; HET: GDP; 2.5A {Streptococcus thermophilus} Probab=99.55 E-value=1.6e-18 Score=123.82 Aligned_cols=151 Identities=17% Similarity=0.216 Sum_probs=92.6 Template_Neff=9.700 Q sequence1 9 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLSY--PDT 80 (184) Q Consensus 9 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~~ 80 (184) .+|+++|.+++|||||++++.+........+...... ...... ....+.+||+||...... ....+. ..+ T Consensus 2 ~~i~lvG~~~~GKStl~n~l~~~~~~~~~~~g~t~~~-~~~~~~-~~~~~~l~D~pG~~~~~~~~~~e~~~~~~~~~~~~ 79 (260) T 4NON_A 2 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER-KSGLVK-KNKDLEIQDLPGIYSMSPYSPEEKVARDYLLSQRA 79 (260) T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSCCEE-EEEEET-TEEEEEEEECCCCSSCCSSSHHHHHHHHHHHTTCC T ss_pred cEEEEECCCCCCHHHHHHHHHCCCCCcCCCCCceeee-EEEEEe-eCCcEEEEeCCCCccCCCCCHHHHHHHHHHHhCCC Confidence 5799999999999999999987654221111111111 011111 234688999999764432 123333 568 Q sequence1 81 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160 (184) Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184) |++++|+|.++....... ...+.. ...|+++|+||+|+......... ...+....+ .+++ T Consensus 80 d~ii~VvDas~~~~~~~l----~~~l~~--~~~p~ilvlNk~D~~~~~~~~~~-------------~~~l~~~~~-~~v~ 139 (260) T 4NON_A 80 DSILNVVDATNLERNLYL----TTQLIE--TGIPVTIALNMIDVLDGQGKKIN-------------VDKLSYHLG-VPVV 139 (260) T ss_dssp SEEEEEEEGGGHHHHHHH----HHHHHH--TSSCEEEEEECHHHHHTTTCCBC-------------HHHHHHHHT-SCEE T ss_pred CEEEEEEeCCchHHHHHH----HHHHHH--hCCCEEEEEecHHHhcccccccC-------------HHHHHHHhC-CCEE Confidence 999999999875433222 111211 35899999999999864221110 001111222 5788 Q sequence1 161 ECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~ 181 (184) .+|+.++.|++++++.+...+ T Consensus 140 ~~sa~~~~gi~~l~~~l~~~~ 160 (260) T 4NON_A 140 ATSSLKQTGVDQVVKKAAHTT 160 (260) T ss_dssp ECBTTTTBSHHHHHHHHHHSS T ss_pred EeECCCCCCHHHHHHHHHHhc Confidence 999999999999998877654
##### No 266 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2ZEJ_B Leucine-rich repeat kinase 2 (E.C.2.7.11.1); Parkinson's Disease, LRRK2, ROC, GTPase; HET: GDP; 2.0A {Homo sapiens} Probab=99.55 E-value=1.6e-18 Score=115.75 Aligned_cols=169 Identities=21% Similarity=0.319 Sum_probs=97.7 Template_Neff=12.700 Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYV--PTVFEN-YVADIEV---DGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~--~t~~~~-~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) .++|+++|+.++|||||++++.......... ++.... ....... ......+.+||++|+..+...+..+...++ T Consensus 2 ~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 81 (184) T 2ZEJ_B 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184) T ss_dssp -CEEEEEECTTSSHHHHHHHHHCC-------CCSSCSEEEEEEEC---------CEEEEEEECSHHHHHHTSHHHHHHSE T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCccccCcccCCCceeEeeeeeEEecCCCCeEEEEEEecCCCccccccccccccCCe Confidence 5789999999999999999998765432111 111010 0111111 113467899999998877777778888999 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184) ++++|+++++..........+...+.......|+++|+||.|............+... .............++. T Consensus 82 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~D~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 155 (184) T 2ZEJ_B 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITK------ELLNKRGFPAIRDYHF 155 (184) T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGSCTHHHHHHHHHHHH------HTTTCTTSCEEEEEEE T ss_pred EEEEEEeCCCChhHHHhHHHHHHHHHHhcCCCCEEEEEecCCCCCHHHHHHHHHHHHH------HHHHHcCCCCcceeEe Confidence 9999999987543222222333333222346899999999998764322111111000 0000011111244678 Q sequence1 162 CSAKTKD-GVREVFEMATRAAL 182 (184) Q Consensus 162 ~s~~~~~-~i~~~~~~~~~~~~ 182 (184) +|+..+. +++++++++.+.+. T Consensus 156 ~s~~~~~~~i~~l~~~i~~~~~ 177 (184) T 2ZEJ_B 156 VNATEESDALAKLRKTIINESL 177 (184) T ss_dssp CCTTSCCHHHHHHHHHHHHHHH T ss_pred eecCCCcHHHHHHHHHHHHHHh Confidence 8888877 89999888776653
##### No 267 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2ZEJ_A Leucine-rich repeat kinase 2 (E.C.2.7.11.1); Parkinson's Disease, LRRK2, ROC, GTPase; HET: MSE, GDP; 2.0A {Homo sapiens} Probab=99.55 E-value=1.8e-18 Score=115.26 Aligned_cols=168 Identities=21% Similarity=0.310 Sum_probs=96.9 Template_Neff=12.900 Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENY-VADIEV---DGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~--~~t~~~~~-~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) .++|+++|+.++|||||++++......... .++..... ...... ......+.+||+||+..+...+..++..++ T Consensus 2 ~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 81 (184) T 2ZEJ_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184) T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcccccCccCCCceeeEeeEEEEecCCCCeEEEEEEEcCCCccchhcccceecCCE Confidence 578999999999999999999876543211 11111110 111111 112457889999998888777778888999 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184) ++++|+++....+.......+...+.......|+++++||.|................ .............++. T Consensus 82 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~k~D~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 155 (184) T 2ZEJ_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITK------ELLNKRGFPAIRDYHF 155 (184) T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHCCC------CCTTCTTSCEEEEEEE T ss_pred EEEEEEeCCCChHHHHHHHHHHHHHHHhcCCCCEEEEEecccCCcHHHHHHHHHHHHH------HHHHHcCCCceeeeEE Confidence 9999999987543222222333333222246889999999998764321111110000 0000001111245678 Q sequence1 162 CSAKTKD-GVREVFEMATRAA 181 (184) Q Consensus 162 ~s~~~~~-~i~~~~~~~~~~~ 181 (184) +|+..+. ++++++..+.+.+ T Consensus 156 ~s~~~~~~~~~~l~~~i~~~~ 176 (184) T 2ZEJ_A 156 VNATEESDALAKLRKTIINES 176 (184) T ss_dssp CCTTSCCHHHHHHHHHHHHHH T ss_pred EecCCCCHHHHHHHHHHHHHH Confidence 8999886 8999888776654
##### No 268 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2WJH_B FERROUS IRON TRANSPORT PROTEIN B; METAL TRANSPORT, MEMBRANE G-PROTEINS, FERROUS; HET: GDP, FLC; 2.1A {METHANOCALDOCOCCUS JANNASCHII} Probab=99.55 E-value=1.9e-18 Score=114.61 Aligned_cols=156 Identities=14% Similarity=0.130 Sum_probs=95.4 Template_Neff=11.700 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLSY--P 78 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~ 78 (184) +.++|+++|++++|||+|++++..........++...... ..........+.+||++|...... ....+. . T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 80 (166) T 2WJH_B 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKK-EGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (166) T ss_dssp CEEEEEEEESTTSSHHHHHHHHSCSCCEEEECTTSCSEEE-EEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHS T ss_pred CCeeEEEECCCCCCHHHHHHHHhCCCCcccCCCCccceee-EEEEEECCeEEEEEECCCccccCccchhHHHHHHHHHhc Confidence 4689999999999999999999876544322222111111 111112234688999999754321 222222 2 Q sequence1 79 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFG 158 (184) Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184) .++++++++|......... +...+.. ...|+++|+||.|+......... ...++...+ .+ T Consensus 81 ~~~~v~~v~d~~~~~~~~~----~~~~~~~--~~~~~i~v~~k~D~~~~~~~~~~-------------~~~l~~~~~-~~ 140 (166) T 2WJH_B 81 KPDLVVNIVDATALERNLY----LTLQLME--MGANLLLALNKMDLAKSLGIEID-------------VDKLEKILG-VK 140 (166) T ss_dssp CCSEEEEEEEGGGHHHHHH----HHHHHHH--TTCCEEEEEECHHHHHHTTCCCC-------------HHHHHHHHS-CC T ss_pred CCCEEEEEEehhHhHHHHH----HHHHHHH--cCCCEEEEEEcHHHchhccchhc-------------HHHHHHHHC-CE Confidence 4678899988876543222 2222211 25789999999999764321110 111122222 57 Q sequence1 159 YMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 159 ~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) ++.+|+.++.++.+++.++.+.+.+ T Consensus 141 ~~~~s~~~~~~v~~~~~~l~~~~~~ 165 (166) T 2WJH_B 141 VVPLSAAKKMGIEELKKAISIAVKD 165 (166) T ss_dssp EEECBTTTTBCHHHHHHHHHHHHSC T ss_pred EEEcccccccCHHHHHHHHHHHHhc Confidence 8899999999999999988877643
##### No 269 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1EGA_B GTP-BINDING PROTEIN ERA; ERA, GTPASE, RNA-BINDING, RAS-LIKE, HYDROLASE; HET: SO4; 2.4A {Escherichia coli} SCOP: c.37.1.8, d.52.3.1 Probab=99.55 E-value=1.9e-18 Score=125.73 Aligned_cols=162 Identities=15% Similarity=0.081 Sum_probs=96.3 Template_Neff=10.500 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY---------DRLR 73 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~ 73 (184) +...+..+|+++|.+|+|||||++++.+...........................+.+||+||.... .... T Consensus 3 ~~~~~~~~V~viG~~~~GKStlin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~ 82 (301) T 1EGA_B 3 IDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAA 82 (301) T ss_dssp -CCCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCCSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCT T ss_pred CccccceEEEEECCCCCCHHHHHHHHhCCcccccCCCCCCccceEEEEEecCCeEEEEEeCCCCCchHHHHHHHHHHHHH Confidence 3456788999999999999999999987654322211111111111111223467899999996321 1122 Q sequence1 74 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 153 (184) Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184) ..++..+|++++++|.+..... . ..+...+.. ...|+++|+||+|+......... ........ T Consensus 83 ~~~~~~~d~vi~vvd~~~~~~~--~-~~~l~~l~~--~~~p~ilV~nK~Dl~~~~~~~~~------------~~~~~~~~ 145 (301) T 1EGA_B 83 SSSIGDVELVIFVVEGTRWTPD--D-EMVLNKLRE--GKAPVILAVNKVDNVQEKADLLP------------HLQFLASQ 145 (301) T ss_dssp TSCCCCEEEEEEEEETTCCCHH--H-HHHHHHHHS--SSSCEEEEEESGGGCSCHHHHHH------------HHHHHTTT T ss_pred HHhhcCCCEEEEEEeCCCCCCc--h-HHHHHHHHc--CCCCEEEEEechhccCchhhhHH------------HHHHHHhc Confidence 2344678999999988753211 1 222222222 35789999999999864311000 00001111 Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) .....++++||+++.|+++++.++.+.+ T Consensus 146 ~~~~~~~~vSa~~~~gi~~l~~~l~~~~ 173 (301) T 1EGA_B 146 MNFLDIVPISAETGLNVDTIAAIVRKHL 173 (301) T ss_dssp SCCSEEEEECTTTTTTHHHHHHHHHHTC T ss_pred CCcccEEEeecCcCCCHHHHHHHHHHhC Confidence 2235688999999999999998876654
##### No 270 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3IEU_A GTP-binding protein era; ERA, GTPase, KH domain, GDP; HET: GDP, SO4; 2.8A {Escherichia coli K-12} Probab=99.55 E-value=1.9e-18 Score=125.73 Aligned_cols=162 Identities=15% Similarity=0.081 Sum_probs=96.3 Template_Neff=10.500 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY---------DRLR 73 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~ 73 (184) +...+..+|+++|.+|+|||||++++.+...........................+.+||+||.... .... T Consensus 3 ~~~~~~~~V~viG~~~~GKStlin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~ 82 (301) T 3IEU_A 3 IDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAA 82 (301) T ss_dssp -CCCEEEEEEEECSTTSSHHHHHHHHHCCSEEEECTTCCCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCT T ss_pred CccccceEEEEECCCCCCHHHHHHHHhCCcccccCCCCCCccceEEEEEecCCeEEEEEeCCCCCchHHHHHHHHHHHHH Confidence 3456788999999999999999999987654322211111111111111223467899999996321 1122 Q sequence1 74 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 153 (184) Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184) ..++..+|++++++|.+..... . ..+...+.. ...|+++|+||+|+......... ........ T Consensus 83 ~~~~~~~d~vi~vvd~~~~~~~--~-~~~l~~l~~--~~~p~ilV~nK~Dl~~~~~~~~~------------~~~~~~~~ 145 (301) T 3IEU_A 83 SSSIGDVELVIFVVEGTRWTPD--D-EMVLNKLRE--GKAPVILAVNKVDNVQEKADLLP------------HLQFLASQ 145 (301) T ss_dssp TSCCCCEEEEEEEEETTCCCHH--H-HHHHHHHHT--SSSCEEEEEECGGGCSSTTTHHH------------HHHHHHTS T ss_pred HHhhcCCCEEEEEEeCCCCCCc--h-HHHHHHHHc--CCCCEEEEEechhccCchhhhHH------------HHHHHHhc Confidence 2344678999999988753211 1 222222222 35789999999999864311000 00001111 Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) .....++++||+++.|+++++.++.+.+ T Consensus 146 ~~~~~~~~vSa~~~~gi~~l~~~l~~~~ 173 (301) T 3IEU_A 146 MNFLDIVPISAETGLNVDTIAAIVRKHL 173 (301) T ss_dssp SCCSEEEECCTTTCTTHHHHHHHHHHTC T ss_pred CCcccEEEeecCcCCCHHHHHHHHHHhC Confidence 2235688999999999999998876654
##### No 271 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3LVQ_E Arf-GAP with SH3 domain, ANK; Arf, GAP, GDP, ASAP3, UPLC1; HET: GDP; 3.38A {Homo sapiens} Probab=99.54 E-value=2.5e-18 Score=132.64 Aligned_cols=163 Identities=20% Similarity=0.262 Sum_probs=109.0 Template_Neff=11.300 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) ....+|+++|..++|||+|++++....+... .++.... . .........+.+||++|++.+...+..++..+|++++ T Consensus 320 ~~~~~i~v~G~~~~GKs~l~~~~~~~~~~~~-~~t~~~~-~--~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~ad~vll 395 (497) T 3LVQ_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFN-V--ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497) T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEE-E--EEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEE T ss_pred ccceEEEEeCCCCCCHHHHHHHHhCCCCCCC-CCeeceE-E--EEEEeeceEEEEEECCCCHHHHHHHHHHhcCCCEEEE Confidence 4567999999999999999999886654321 1111111 1 1112234578899999998887778888889999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184) |+|+++..++......+....... ....|+++|+||.|+........ .. ............ ..++++|+ T Consensus 396 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilv~nK~D~~~~~~~~~-~~--------~~~~~~~~~~~~-~~~~~~s~ 465 (497) T 3LVQ_E 396 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE-IQ--------EKLGLTRIRDRN-WYVQPSCA 465 (497) T ss_dssp EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHH-HH--------HHTTCTTCCSSC-EEEEECBT T ss_pred EEECCChHhHHHHHHHHHHHHHHcCCCCCCEEEEEECCCCCCCCCHHH-HH--------HHHHHHHHHHcC-CCEEECcC Confidence 999998776766655444443322 12689999999999876321111 00 011111111112 56889999 Q sequence1 165 KTKDGVREVFEMATRAAL 182 (184) Q Consensus 165 ~~~~~i~~~~~~~~~~~~ 182 (184) +++.|+.++|..+.+.+. T Consensus 466 ~~~~~v~~l~~~i~~~~~ 483 (497) T 3LVQ_E 466 TSGDGLYEGLTWLTSNYK 483 (497) T ss_dssp TTTBTHHHHHHHHHHHCC T ss_pred CcCCCHHHHHHHHHHHHH Confidence 999999999998887654
##### No 272 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3R9X_A GTPase Era, Ribosomal RNA small; GTPase, KH domain, ribosome, biogenesis; HET: MRD, GNP; 2.8A {Aquifex aeolicus} Probab=99.54 E-value=2.5e-18 Score=125.39 Aligned_cols=164 Identities=18% Similarity=0.131 Sum_probs=96.8 Template_Neff=10.600 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT-VFENYVADIEVDGKQVELALWDTAGLEDY----------DR 71 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~ 71 (184) +......+|+++|.+|+|||||++++.+.......... +................+.+||+||.... .. T Consensus 4 ~~~~~~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 83 (307) T 3R9X_A 4 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE 83 (307) T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH T ss_pred cccccCeEEEEEcCCCCCHHHHHHHHhCCCccccCCCCCCccceEEEEEEccCCEEEEEEECCCCCChhhccHHHHHHHH Confidence 45567789999999999999999999876543221111 11111111111113457889999997542 22 Q sequence1 72 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA 151 (184) Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (184) .....+..+|++++|+|+++..+.... ..+..... ....|+++|+||+|+........... .... T Consensus 84 ~~~~~~~~~d~vl~VvD~~~~~~~~~~-~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~------------~~l~ 148 (307) T 3R9X_A 84 IAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIK--PLNKPVIVVINKIDKIGPAKNVLPLI------------DEIH 148 (307) T ss_dssp HHHHHHHHCSEEEEEEETTTCSCHHHH-HHCCCCCG--GGCCCEEEEEECGGGSSSGGGGHHHH------------HHHH T ss_pred HHHHHHccCCEEEEEEECCCCCCHHHH-HHHHHHHH--HhCCCEEEEEECcccCCcHHHHHHHH------------HHHH Confidence 333455678999999999875433222 11111111 12689999999999986431110000 0000 Q sequence1 152 NRI-GAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 152 ~~~-~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) ... ....++.+||+++.|+.+++.++...+ T Consensus 149 ~~~~~~~~i~~iSa~~~~~i~~l~~~i~~~~ 179 (307) T 3R9X_A 149 KKHPELTEIVPISALKGANLDELVKTILKYL 179 (307) T ss_dssp HHCTTCCCEEECCTTTCTTHHHHHHHHHTTC T ss_pred HHcCCCCcEEEeeCCCCCCHHHHHHHHHHhC Confidence 111 125788999999999999988776654
##### No 273 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5M04_A GTPase ObgE/CgtA (E.C.3.6.5.-); GTPase, ObgE, CgtA, hydrolase; HET: GDP; 1.85A {Escherichia coli DH5[alpha]} Probab=99.54 E-value=2.6e-18 Score=128.06 Aligned_cols=161 Identities=19% Similarity=0.209 Sum_probs=98.1 Template_Neff=8.600 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-TVFENYVADIEVDGKQVELALWDTAGLEDY-------DRLRPLSYP 78 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~ 78 (184) ...+|+++|.+++|||||++++..........+ ++.......+.. .....+.+||+||.... ...+..++. T Consensus 178 ~~~~V~lvG~~~aGKStLl~~l~~~~~~~~~~~~tt~~~~~~~~~~-~~~~~i~i~D~pG~~~~~~~~~~l~~~~l~~l~ 256 (360) T 5M04_A 178 LLADVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRM-DNEKSFVVADIPGLIEGAAEGAGLGIRFLKHLE 256 (360) T ss_dssp CCCSEEEECCTTSSHHHHHHHHCSBCCEEESCSCSSSCCCEEEEEE-ETTEEEEEEEHHHHHTTSSSCTHHHHHHHHTGG T ss_pred hcccEEEEcCCCCCHHHHHHHHHcCCCcccCCCCCCccCeEEEEEe-cCCCeEEEeccCCcccchhcCcchHHHHHHHHh Confidence 346899999999999999999986543221111 111111111111 12457899999996432 223445567 Q sequence1 79 DTDVILMCFSIDSPD---SLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN 152 (184) Q Consensus 79 ~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~---~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184) .++++++|+|+++.. .+... ..+...+.... ...|+++|+||+|+.......... ..++. T Consensus 257 ~~d~il~VvD~~~~~~~~~~~~~-~~~~~~L~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~-------------~~l~~ 322 (360) T 5M04_A 257 RCRVLLHLIDIDPIDGTDPVENA-RIIISELEKYSQDLATKPRWLVFNKIDLLDKVEAEEKA-------------KAIAE 322 (360) T ss_dssp GCCEEEEEEESSCTTSCCHHHHH-HHHHHHHHHHCHHHHTSCEEEEEECGGGSCHHHHHHHH-------------HHHHH T ss_pred hCCEEEEEEECCCCCCCCHHHHH-HHHHHHHHHhchhhcCCCEEEEEeCcccCCHHHHHHHH-------------HHHHH Confidence 899999999998643 33332 22333332221 258999999999997642211110 01111 Q sequence1 153 RIG-AFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 153 ~~~-~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ... ...++++||+++.++.+++.++.+.+. T Consensus 323 ~l~~~~~i~~vSa~~g~gi~~L~~~i~~~l~ 353 (360) T 5M04_A 323 ALGWEDKYYLISAASGLGVKDLCWDVMTFII 353 (360) T ss_dssp HTTCCSCCEECCTTTCTTHHHHHHHHHHHHH T ss_pred HhCCCCeEEEeeCCCCCCHHHHHHHHHHHHH Confidence 111 146889999999999999998887654
##### No 274 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4ARZ_B GTP-BINDING PROTEIN GTR1, GTP-BINDING PROTEIN; HYDROLASE, GTPASE, CELL GROWTH; HET: GTP, GDP; 3.1A {SACCHAROMYCES CEREVISIAE} Probab=99.54 E-value=2.6e-18 Score=127.29 Aligned_cols=173 Identities=13% Similarity=0.149 Sum_probs=103.1 Template_Neff=9.100 Q sequence1 2 AMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL---RPL 75 (184) Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---~~~ 75 (184) .+.....++|+++|..++||||+++++.+...+... .++.... . ... .....+.+||+||+..+... +.. T Consensus 3 ~~~~~~~~kIll~G~~~sGKSSli~~l~~~~~~~~~~~~~~T~~~~-~--~~~-~~~~~~~i~D~pG~~~~~~~~~~~~~ 78 (341) T 4ARZ_B 3 LEATDSKAMVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPS-L--EHF-STLIDLAVMELPGQLNYFEPSYDSER 78 (341) T ss_dssp --CCCBSCCCEEEEETTSSHHHHHHHHHHHTHHHHHCCCCCTCCSG-G--GCS-SBSCCCEEEEECSCSSSCCCCHHHHH T ss_pred CccccCCceEEEECCCCCCHHHHHHHHHhcCCcccccccCCCCCce-e--eec-cccCeEEEEeCCCCcccCCCccCHHH Confidence 345677899999999999999999999876543221 1111111 0 011 12257899999998877655 666 Q sequence1 76 SYPDTDVILMCFSIDSP--DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 153 (184) Q Consensus 76 ~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184) ++..++++++|+|+.+. ..+..... +........+..|+++++||.|+................. .......... T Consensus 79 ~~~~~daiI~ViD~~~~~~~~~~~l~~-~i~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~i~~~~--~~~l~~~~~~ 155 (341) T 4ARZ_B 79 LFKSVGALVYVIDSQDEYINAITNLAM-IIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRT--GEELLELGLD 155 (341) T ss_dssp HHHHCSEEEEEEETTSCCHHHHHHHHH-HHHHHHHHSCSCEEEEEEECCTTCCHHHHHHHHHHHHHHH--HTHHHHTTCC T ss_pred HHhccCEEEEEEcCCCchHHHHHHHHH-HHHHHHHHCCCCcEEEEEeccCCCCHhhHHHHHHHHHHHH--HHHHHHcCCC Confidence 78899999999999863 22222211 2222222235789999999999976432111111100000 0000000001 Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) .....++.+|+.++ ++.++|+.+++.++ T Consensus 156 ~~~i~~~~tS~~d~-si~eafs~vi~~li 183 (341) T 4ARZ_B 156 GVQVSFYLTSIFDH-SIYEAFSRIVQKLI 183 (341) T ss_dssp CCCEEEEECCTTSS-HHHHHHHHHHHHHC T ss_pred CceEEEEEccCCch-hHHHHHHHHHHHHh Confidence 12367889999999 99999988877654
##### No 275 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5KSZ_A Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GCP; 2.5A {Homo sapiens} Probab=99.53 E-value=3e-18 Score=130.16 Aligned_cols=161 Identities=16% Similarity=0.168 Sum_probs=104.0 Template_Neff=10.800 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE---NYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184) ....++|+++|.+++|||+|++++....+.......... .....+...+....+.+||++|++.+.. ++..++ T Consensus 239 ~~~~~~i~v~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~~~~d 314 (424) T 5KSZ_A 239 QRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESEFLTE----AEIICD 314 (424) T ss_dssp CCSEEEEEEECSTTSSHHHHHHHHTTCCHHHHTTCCGGGCCSEEEEEEEETTEEEEEEEEEECCCSCCCS----STTCSS T ss_pred cCCcEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCccccceEEEEEEeCCCcEEEEEEEeCCchHHHHH----HHccCC Confidence 345789999999999999999999876544321111110 0111223334456788999999764432 456899 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYM 160 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (184) ++++|+|+++..++......+...... ...|+++|+||+|+...... .......++...+. ..++ T Consensus 315 ~vi~v~d~~~~~s~~~~~~~~~~~~~~--~~~pvivv~nK~D~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 380 (424) T 5KSZ_A 315 VVCLVYDVSNPKSFEYCARIFKQHFMD--SRIPCLIVAAKSDLHEVKQE------------YSISPTDFCRKHKMPPPQA 380 (424) T ss_dssp EEEEEEETTCTTTHHHHHHHCCCCCTT--SSSCEEEEEECTTSCCCCCC------------SSSCHHHHHHHTTCCCCEE T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhC--CCCCEEEEEeCCCCCCccCC------------CHHHHHHHHHHhCCCCcEE Confidence 999999999876666553333332221 46899999999998763211 01111222223222 2356 Q sequence1 161 ECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) .+|++++.|+.+++.++.+.+++ T Consensus 381 ~~Sa~~~~~i~~~~~~i~~~~~~ 403 (424) T 5KSZ_A 381 FTCNTADAPSKDIFVKLTTMAMY 403 (424) T ss_dssp CCSCSSSSCCCHHHHHHHHHHHC T ss_pred EecCCcCCCHHHHHHHHHHHHhh Confidence 89999999999999998887653
##### No 276 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3C5H_A Glucocorticoid receptor DNA-binding factor 1; ras, gtpase, glucorticoid receptor, Structural; HET: GNP; 1.8A {Homo sapiens} Probab=99.53 E-value=3.2e-18 Score=121.96 Aligned_cols=89 Identities=16% Similarity=0.153 Sum_probs=58.0 Template_Neff=9.900 Q sequence1 80 TDVILMCFSIDSP--DSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184) Q Consensus 80 ~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184) +|++++|+|+++. .++......+....... ....|+++|+||+|+....... ....+...... T Consensus 163 ~d~vi~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~--------------~~~~~~~~~~~ 228 (255) T 3C5H_A 163 VDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIR--------------DAHTFALSKKN 228 (255) T ss_dssp CCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHH--------------HHHHHHHTSSS T ss_pred CcEEEEEEECCCcccCCHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCChhhHh--------------HHHHHHHHcCC Confidence 8899999999987 66665544333333322 1368999999999998643211 11111112123 Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ..++.+|+.++.++.+++.++.+.+. T Consensus 229 ~~~~~iSa~~~~gi~~l~~~i~~~~~ 254 (255) T 3C5H_A 229 LQVVETSARSNVNVDLAFSTLVQLID 254 (255) T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHHH T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHHh Confidence 57889999999999999999887654
##### No 277 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2CJW_B GTP-BINDING PROTEIN GEM; G-PROTEIN, NUCLEOTIDE-BINDING, GTP-BINDING, SMALL GTPASE; HET: GDP, CAS; 2.1A {HOMO SAPIENS} Probab=99.53 E-value=3.5e-18 Score=115.27 Aligned_cols=166 Identities=25% Similarity=0.287 Sum_probs=96.4 Template_Neff=12.400 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY-VP-TVFENYVADIEVDGKQVELALWDTAGLEDYD-RLRPLSYPDTD 81 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~ 81 (184) .....+|+++|..++|||||++++......... .+ ............++....+.++|++|..... ..+..+...+| T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (192) T 2CJW_B 3 GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192) T ss_dssp TCCEEEEEEEECTTSSHHHHHHHHHTC------------CCEEEEEEEETTEEEEEEEECCCCC-------CTTHHHHCS T ss_pred CceeEEEEEECCCCCCHHHHHHHHhcCcccCCCCcccccceEEEEEEEeCCeEEEEEEEEccccCCCchhhHHHhcccCC Confidence 346789999999999999999999864332111 11 1111112222223333445566665543222 23444556789 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184) ++++|+|+++..++......+....... ....|+++|+||.|+....... .......+... .+.++ T Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~------------~~~~~~~~~~~-~~~~~ 149 (192) T 2CJW_B 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVS------------VSEGRACAVVF-DCKFI 149 (192) T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSC------------HHHHHHHHHHH-TCEEE T ss_pred EEEEEEeCCChHhHHHHHHHHHHHHHhcCCCCCCEEEEEeCcccccceeec------------HHHHHHHHHHh-CCcEE Confidence 9999999988666655544333332221 2368999999999997632110 01111111222 25788 Q sequence1 161 ECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) .+|++++.++.+++.++.+.+.+ T Consensus 150 ~~s~~~~~~i~~~~~~l~~~~~~ 172 (192) T 2CJW_B 150 ETSAAVQHNVKELFEGIVRQVRL 172 (192) T ss_dssp EEBTTTTBSHHHHHHHHHHHHHH T ss_pred EeccccCCCHHHHHHHHHHHHHh Confidence 99999999999999988877653
##### No 278 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5X4B_A GTPase Der; Ribosome biogenesis, Rossmann fold, GTPase; HET: GDP; 1.5A {Bacillus subtilis (strain 168)} Probab=99.53 E-value=3.6e-18 Score=112.07 Aligned_cols=152 Identities=15% Similarity=0.159 Sum_probs=91.1 Template_Neff=12.500 Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLE--------DYDRLRPLSYPD 79 (184) Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~ 79 (184) +.+++++|+.|+|||++++++.............................+.+||++|.. .....+..+... T Consensus 2 ~~~i~v~G~~g~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 81 (162) T 5X4B_A 2 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 81 (162) T ss_dssp CSEEEEECCSSSSHHHHHHHHBSCC----------CCSCSEEEEEETTEEEEEEEGGGCCCCSCCHHHHHHHHHHHHHHH T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccCCCCCCCceeeEEEEEeecCceEEEEEECCCCCCCChHHHHHHHHHHHHHHhc Confidence 568999999999999999999876543221111111111111122234578899999943 223334445677 Q sequence1 80 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 159 (184) Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184) ++++++++|..+ .+......+...... ...|+++|+||.|+...... ...++.. ....+ T Consensus 82 ~~~~i~v~d~~~--~~~~~~~~~~~~~~~--~~~~~~~v~~k~d~~~~~~~----------------~~~~~~~-~~~~~ 140 (162) T 5X4B_A 82 ADVIIFMVNGRE--GVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRAN----------------IYDFYSL-GFGEP 140 (162) T ss_dssp CSEEEEEEETTT--CSCHHHHHHHHHHTT--CCSCEEEEEECCCSGGGGGG----------------GGGGGGG-SSSCE T ss_pred CCEEEEEEeCCc--cchhHHHHHHHHHHH--cCCCEEEEEeccccHhHHHH----------------HHHHHHh-CCCCe Confidence 899999988764 233332333333322 25889999999998642211 0011111 22568 Q sequence1 160 MECSAKTKDGVREVFEMATRA 180 (184) Q Consensus 160 ~~~s~~~~~~i~~~~~~~~~~ 180 (184) +++|+.++.++.+++.++.+. T Consensus 141 ~~~s~~~~~~i~~~~~~l~~~ 161 (162) T 5X4B_A 141 YPISGTHGLGLGDLLDAVAEH 161 (162) T ss_dssp EECBTTTTBSHHHHHHHHHHT T ss_pred EEeecccCCCHHHHHHHHHhh Confidence 899999999999999988764
##### No 279 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6VP6_B Leucine-rich repeat serine/threonine-protein kinase 2; Kinase, GTPase, SIGNALING PROTEIN; HET: GDP, TPO; 3.47A {Homo sapiens} Probab=99.53 E-value=3.9e-18 Score=144.12 Aligned_cols=124 Identities=25% Similarity=0.406 Sum_probs=0.0 Template_Neff=9.500 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV--YVPTVFENYV-ADIEVD---GKQVELALWDTAGLEDYDRLRPLS 76 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~--~~~t~~~~~~-~~~~~~---~~~~~~~i~D~~g~~~~~~~~~~~ 76 (184) +...+..+|+++|.+++|||||++++....+... ..++....+. ...... ...+.+.+||++|++.+......+ T Consensus 3 ~~~~~~~kI~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 82 (1201) T 6VP6_B 3 AVPYNRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHF 82 (1201) T ss_dssp -------------------------------------------------------------------------------- T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHhcCCCcccccccCeeEEEEEEEEEEEcCCCCceEEEEEEEcCCCHHHHhhcHhh Confidence 4556789999999999999999999987665432 1122211111 111111 223678999999988887777778 Q sequence1 77 YPDTDVILMCFSIDS-PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 127 (184) Q Consensus 77 ~~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~ 127 (184) +..+|++++|+|+++ ...+... ..+...+.......|+++|+||+|+... T Consensus 83 ~~~~d~iIlV~D~s~~~~~~~~~-~~~~~~i~~~~~~~piilV~nK~Dl~~~ 133 (1201) T 6VP6_B 83 MTQRALYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDE 133 (1201) T ss_dssp ---------------------------------------------------- T ss_pred hccCCEEEEEEeCCCchHHHHHH-HHHHHHHHHhcCCCCEEEEEECCCCCCH Confidence 889999999999998 3433333 3344433332346899999999999863
##### No 280 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1SUL_B Probable GTP-binding protein YsxC; GTP, GTPase, GTP-binding, HYDROLASE; 2.0A {Bacillus subtilis} SCOP: c.37.1.8 Probab=99.53 E-value=3.9e-18 Score=116.45 Aligned_cols=161 Identities=12% Similarity=0.118 Sum_probs=94.8 Template_Neff=11.000 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLE----------DYDRLRP 74 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~ 74 (184) ....++|+++|.+|+|||||++++..........+........... .....+.+||++|.. .+..... T Consensus 20 ~~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~ 97 (195) T 1SUL_B 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--IINDELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195) T ss_dssp CSCCCEEEEEESCHHHHHHHHHHHTTCSSSCCCCCSTTCTTCEEEE--EETTTEEEEECCCSCCSSCCHHHHHHHHHHHH T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHhcccccCCCCCCCCcceEEEEE--EECCeEEEEeCCCCCCCCCCHHHHHHHHHHHH Confidence 4567899999999999999999998765433222211111111111 112367899999963 2222222 Q sequence1 75 LSY---PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA 151 (184) Q Consensus 75 ~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (184) .+. ..++++++++|.......... .+...+.. ...|+++|+||+|+............. ...+ T Consensus 98 ~~~~~~~~~~~ii~v~d~~~~~~~~~~--~~~~~~~~--~~~piiiv~~k~D~~~~~~~~~~~~~~---------~~~~- 163 (195) T 1SUL_B 98 TYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVV---------RQTL- 163 (195) T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHH---------HHHH- T ss_pred HHHhchhhccEEEEEEeCCCCCChhHH--HHHHHHHH--hCCCEEEEEecHhhCCcchHHHHHHHH---------HHHc- Confidence 222 347789999888764332222 23333322 258999999999997643221111100 0000 Q sequence1 152 NRIGAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 152 ~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) .......++++|+.++.++.++|..+.+.+ T Consensus 164 ~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~ 193 (195) T 1SUL_B 164 NIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195) T ss_dssp TCCTTSEEEECCTTTCTTHHHHHHHHHHHH T ss_pred CCCCCCceEEEECCCccCHHHHHHHHHHHH Confidence 111125789999999999999999887765
##### No 281 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1SVI_A GTP-binding protein YsxC; YsxC, ENGB, GTPase, GTP-binding protein; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 Probab=99.53 E-value=3.9e-18 Score=116.45 Aligned_cols=161 Identities=12% Similarity=0.118 Sum_probs=91.4 Template_Neff=11.000 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLE----------DYDRLRP 74 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~ 74 (184) ....++|+++|.+|+|||||++++..........+........... .....+.+||++|.. .+..... T Consensus 20 ~~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~ 97 (195) T 1SVI_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--IINDELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195) T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEE--EETTTEEEEECCCBCCCSSCHHHHHHHHHHHH T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHhcccccCCCCCCCCcceEEEEE--EECCeEEEEeCCCCCCCCCCHHHHHHHHHHHH Confidence 4567899999999999999999998765433222211111111111 112367899999963 2222222 Q sequence1 75 LSY---PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA 151 (184) Q Consensus 75 ~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (184) .+. ..++++++++|.......... .+...+.. ...|+++|+||+|+............. ...+ T Consensus 98 ~~~~~~~~~~~ii~v~d~~~~~~~~~~--~~~~~~~~--~~~piiiv~~k~D~~~~~~~~~~~~~~---------~~~~- 163 (195) T 1SVI_A 98 TYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVV---------RQTL- 163 (195) T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHH---------HHHH- T ss_pred HHHhchhhccEEEEEEeCCCCCChhHH--HHHHHHHH--hCCCEEEEEecHhhCCcchHHHHHHHH---------HHHc- Confidence 222 347789999888764332222 23333322 258999999999997643221111100 0000 Q sequence1 152 NRIGAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 152 ~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) .......++++|+.++.++.++|..+.+.+ T Consensus 164 ~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~ 193 (195) T 1SVI_A 164 NIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195) T ss_dssp TCCTTSEEEECCTTTCTTHHHHHHHHHHHH T ss_pred CCCCCCceEEEECCCccCHHHHHHHHHHHH Confidence 111125789999999999999999887765
##### No 282 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3J8G_X PROTEIN/RNA Complex; Ribosome assembly, EngA, Der, YphC; 5.0A {Escherichia coli K12} Probab=99.53 E-value=4e-18 Score=131.75 Aligned_cols=163 Identities=20% Similarity=0.153 Sum_probs=98.3 Template_Neff=10.600 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRP---------- 74 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~---------- 74 (184) ....++|+++|.+|+|||||++++.+...........................+.+||++|......... T Consensus 199 ~~~~~~i~iiG~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 278 (490) T 3J8G_X 199 QSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKT 278 (490) T ss_dssp TSSCCBEEEEECSSSCHHHHHHHHHCSSCCCCCCCCCCSSSSCCCEEEETTEEEECCSSSSSSCCSSCCCSSSSHHHHHH T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCceeccEEEEeEECCEEEEEEECCCccccCCcchHHHHHHHHHH Confidence 4567899999999999999999998765432221111111111111222345688999999764432211 Q sequence1 75 -LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 153 (184) Q Consensus 75 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184) ..+..+|++++|+|+++..+.... ..+..... ...|+++|+||+|+........ ..... ...... T Consensus 279 ~~~~~~~d~~llv~d~~~~~~~~~~-~~~~~~~~---~~~~vilv~nK~Dl~~~~~~~~-~~~~~---------~~~~~~ 344 (490) T 3J8G_X 279 LQAIEDANVVMLVIDAREGISDQDL-SLLGFILN---SGRSLVIVVNKWDGLSQEVKEQ-VKETL---------DFRLGF 344 (490) T ss_dssp HHHHHHCSEEEEEECSSSCSCHHHH-HHHHHHHH---HTSEEEEEEESCSSSCSSCSTH-HHHHH---------HHHHCC T ss_pred HHHHHhCCEEEEEeecCCCCCHHHH-HHHHHHHH---cCCeEEEEEEcccCCCHHHHHH-HHHHH---------HHHhCC Confidence 125678999999999875443332 22222221 3688999999999986431111 10000 000111 Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) .....++++||+++.|+.+++.++...+ T Consensus 345 ~~~~~~~~iSa~~~~~i~~l~~~l~~~~ 372 (490) T 3J8G_X 345 IDFARVHFISALHGSGVGNLFESVREAY 372 (490) T ss_dssp CSCCCCCEECTTTCSSHHHHHHHHHHHH T ss_pred CCCCeEEEeccCCCCChHHHHHHHHHHH Confidence 2235788999999999999998887665
##### No 283 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5DN8_A GTPase Der; GTP-binding protein, GDP, Complex, Structural; HET: GDP; 1.76A {Coxiella burnetii (strain RSA 493 / Nine Mile phase I)} Probab=99.52 E-value=4.6e-18 Score=129.77 Aligned_cols=163 Identities=17% Similarity=0.136 Sum_probs=95.7 Template_Neff=11.000 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLR----------- 73 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----------- 73 (184) .....+|+++|.+|+|||||++++.+...........................+.+||+||........ T Consensus 175 ~~~~~~i~viG~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 254 (446) T 5DN8_A 175 KEVGIKIAMIGRPNVGKSTLINRLLGEERVIVYDQPGTTRDSIYIPFARNDENYTLIDTAGIRRRAKIQDYVEKFSMIKS 254 (446) T ss_dssp --CCEEEEEECSTTSSHHHHHHHHTTSTTEEECC-------TTEEEEEETTEEEEEECTTCHHHHHHHC----CCCHHHH T ss_pred cccCcEEEEEcCCCCChHHHHHHHhCCCeeEeeCCCCccccceEEEeEECCeEEEEEECCCcCCccccchHHHHHHHHHH Confidence 356789999999999999999999876543221111101111111122233568899999965432211 Q sequence1 74 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 153 (184) Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184) ..++..+|++++|+|.++..+.... ..+..... ...|+++|+||+|+........... ........ T Consensus 255 ~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~----------~~~~~~~~ 320 (446) T 5DN8_A 255 LQAMHAADVVIFLLDARQGVTEQDL-RLLNRIVE---AGVSLIIAVNKWDGLNIEERDNVRN----------AIDRRMPF 320 (446) T ss_dssp HHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH---HTCEEEEEEECCTTCCHHHHHHHHH----------HHHHHCGG T ss_pred HHHHhhCCEEEEEccCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeCccCCCHHHHHHHHH----------HHHHhCCc Confidence 1235678999999999875443322 22222221 3588999999999976432111000 00011111 Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) .....++++||+++.++.+++.++.+.+ T Consensus 321 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 348 (446) T 5DN8_A 321 VDFARRYFISALHGTGVGKLFRAIQESY 348 (446) T ss_dssp GTTSEEEECCTTTCTTTTHHHHHHHHHH T ss_pred ccccceEecccCCCCCHHHHHHHHHHHH Confidence 2235688899999999999998877654
##### No 284 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1LNZ_A SPO0B-associated GTP-binding protein; GTPase, Obg, stringent factor, stress; HET: G4P; 2.6A {Bacillus subtilis} SCOP: c.37.1.8, b.117.1.1 Probab=99.52 E-value=5e-18 Score=125.89 Aligned_cols=158 Identities=19% Similarity=0.231 Sum_probs=95.6 Template_Neff=9.200 Q sequence1 9 KKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGLED-------YDRLRPLSYPDT 80 (184) Q Consensus 9 ~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~ 80 (184) .+|+++|.+++|||||++++........ +..++.......+.. .....+.+||+||+.. +...+..++..+ T Consensus 159 ~~V~lvG~~~~GKSsLl~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~i~D~pG~~~~~~~~~~l~~~~l~~~~~~ 237 (342) T 1LNZ_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVET-DDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342) T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEEC-SSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC T ss_pred eeEEEEecCCCCHHHHHHHHHcCCCcccCCccccccCcEEEEEc-CCCCeEEEEecCCCCcccccCCccHHHHHHHHhcC Confidence 4899999999999999999986543211 111111111111111 1235788999999754 223344456788 Q sequence1 81 DVILMCFSIDSPDSLENIP--EKWTPEVKHF---CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIG 155 (184) Q Consensus 81 ~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~---~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184) +++++|+|+++..++.... ..+...+... ....|+++|+||+|+.......... ...+ . . T Consensus 238 ~~li~VvD~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~------------~~~~-~--~ 302 (342) T 1LNZ_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAF------------KEKL-T--D 302 (342) T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHH------------HHHC-C--S T ss_pred CEEEEEEeCCCCCCCChHHHHHHHHHHHHHcCccccCCCEEEEEeCcCCCcHHHHHHHH------------HHHh-c--C Confidence 9999999998754333221 1111222211 1248999999999997532110000 0000 0 1 Q sequence1 156 AFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 156 ~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) .+.++++||+++.++.+++.++.+.+. T Consensus 303 ~~~~~~vSa~~g~gi~el~~~l~~~~~ 329 (342) T 1LNZ_A 303 DYPVFPISAVTREGLRELLFEVANQLE 329 (342) T ss_dssp CCCBCCCSSCCSSTTHHHHHHHHHHHT T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHh Confidence 256889999999999999998887664
##### No 285 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4CSU_9 50S RIBOSOMAL PROTEIN L28, 50S; (P)PPGPP, OBG, RIBOSOME ASSEMBLY, STRINGENT; 5.5A {ESCHERICHIA COLI} Probab=99.52 E-value=5e-18 Score=127.94 Aligned_cols=161 Identities=19% Similarity=0.183 Sum_probs=97.4 Template_Neff=9.300 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDY-------DRLRPLSYP 78 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~ 78 (184) ...+|+++|.+++|||||+++++.........+... ......... .....+.+||+||.... ...+..++. T Consensus 158 ~~~~V~lvG~~~aGKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~~~ 236 (390) T 4CSU_9 158 LLADVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRM-DNEKSFVVADIPGLIEGAAEGAGLGIRFLKHLE 236 (390) T ss_dssp STTSEEEECCTTCCHHHHHHHTCSSCCCBCCCSCSSCCCEEEEEEC-SSSCEEEEEESSSSCCCGGGSCSSSHHHHHHHH T ss_pred ccccEEEecCCCCCHHHHHHHHHcCCCccCCCCCCCCcCceEEEEe-cCCceEEEEcCCCCccchHhccchHHHHHHHHh Confidence 346899999999999999999987643221111111 111111111 12457899999996432 223445567 Q sequence1 79 DTDVILMCFSIDSPD---SLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN 152 (184) Q Consensus 79 ~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~---~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184) .++++++|+|++... .+... ..+...+..... ..|+++|+||+|+........... .+.. T Consensus 237 ~~d~il~VvD~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~nK~D~~~~~~~~e~~~-------------~l~~ 302 (390) T 4CSU_9 237 RCRVLLHLIDIDPIDGTDPVENA-RIIISELEKYSQDLATKPRWLVFNKIDLLDKVEAEEKAK-------------AIAE 302 (390) T ss_dssp TCSEEEEEEECSSCCSSCHHHHH-HHHHHHHHHHCHHHHHSSCCCEEECCSSSCSSHHHHHHH-------------HHHH T ss_pred cCCEEEEEEeCCCCCCCCHHHHH-HHHHHHHHHhcHhhcCCcEEEEEECcccCCHHHHHHHHH-------------HHHH Confidence 899999999998653 33332 233333322211 589999999999976421111111 0111 Q sequence1 153 RIG-AFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 153 ~~~-~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ... ...++.+|++++.++.+++.++.+.+. T Consensus 303 ~~~~~~~~~~vSa~~~~gi~el~~~l~~~~~ 333 (390) T 4CSU_9 303 ALGWEDKYYLISAASGLGVKDLCWDVMTFII 333 (390) T ss_dssp HTCSSCCCEECSCCCCSSHHHHHHHHHHHHH T ss_pred HhCCCCcEEEeecCCCCCHHHHHHHHHHHHH Confidence 111 146889999999999999988877653
##### No 286 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5U4V_A Rho GTPase-activating protein 5; GTPase, pseudoGTPase, G domain, Rho; 2.6A {Homo sapiens} Probab=99.52 E-value=5.2e-18 Score=114.45 Aligned_cols=134 Identities=20% Similarity=0.240 Sum_probs=67.9 Template_Neff=9.800 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGL--EDYDRLRPLSYPDT 80 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~--~~~~~~~~~~~~~~ 80 (184) ......++|+++|..++||| +...+ ...... ..+..++..+.+.+||++|+ +.+...+..+ ..+ T Consensus 3 ~~~~~~~ki~vlG~~~vGKt-~~~~~-~~~~~~-----------~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~-~~a 68 (176) T 5U4V_A 3 STNIDKVNLFILGKDGLAQE-LANEI-RTQSTD-----------DEYALDGKIYELDLRPVDAKSPYFLSQLWTAA-FKP 68 (176) T ss_dssp ----CEEEEEEECSTTHHHH-HHHHH-HTTCBT-----------TBEEETTEEEEEEEEEECC----------------C T ss_pred CCCcceEEEEEECCCcccHH-HHHHH-HHhcCC-----------CEEEECCEEEEEEEEEcCCCCchhhhhHHhhh-cCC Confidence 34567799999999999999 33222 111111 11223445678899999998 5555545444 889 Q sequence1 81 DVILMCFSIDSPDSLENIPEKWTPEVKHF--------CPNVPIILV-GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA 151 (184) Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--------~~~~~~~vv-~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (184) +++++|+| ++.++.....++..+.... ....|+++| +||+|+...... .....+..++ T Consensus 69 ~~~i~v~d--~~~Sf~~~~~~~~~i~~~~~~~~~~~~~~~~p~vlV~gnK~Dl~~~~~~-----------v~~~~~~~~a 135 (176) T 5U4V_A 69 HGCFCVFN--SIESLSFIGEFIGKIRTEASQIRKDKYMANLPFTLILANQRDSISKNLP-----------ILRHQGQQLA 135 (176) T ss_dssp EEEEEEES--SHHHHHHHHHHHHHHHHHHHCC-----CTTCCEEEEEEC-------CHH-----------HHHHHHHHHH T ss_pred CEEEEEec--CHHHHHHHHHHHHHHHHHhhHhhhhhhcCCCCEEEEEeecCCCCccccc-----------hHHHHHHHHH Confidence 99999999 7777887755554443221 246788887 999998721111 1122233333 Q sequence1 152 NRIGAFGYMECSA 164 (184) Q Consensus 152 ~~~~~~~~~~~s~ 164 (184) ..++ ..++++|+ T Consensus 136 ~~~~-~~~~e~Sa 147 (176) T 5U4V_A 136 NKLQ-CPFVDVPA 147 (176) T ss_dssp HHHT-CCEEEEC- T ss_pred HHcC-CCEEEcCC Confidence 4444 56888988
##### No 287 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6OJF_A Leucine-rich repeat serine/threonine-protein kinase 2; Parkinson's disease, LRRK2, GTPase, Dimer; HET: GDP; 1.6A {Homo sapiens} Probab=99.52 E-value=5.2e-18 Score=116.48 Aligned_cols=169 Identities=21% Similarity=0.314 Sum_probs=100.9 Template_Neff=11.500 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENY-VADIEV---DGKQVELALWDTAGLEDYDRLRPLSY 77 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~--~~t~~~~~-~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~ 77 (184) ....+++|+++|.+++|||||++++......... .++..... ...... ......+.+||+||+..+...+..++ T Consensus 16 ~~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~ 95 (206) T 6OJF_A 16 VPYNRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFM 95 (206) T ss_dssp --CCSCEEEEESCTTSSHHHHHHHHTCSSSCSSCSSCSSCSEEEEEEEECCCSSSCCCEEEEEEEECSHHHHHTTSHHHH T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHhcCCccccCccCCccceEeEEeeceecCcCCCeEEEEEEecCCChhhhhcchhhc Confidence 4567899999999999999999999876543211 11110000 111111 11245789999999888777777888 Q sequence1 78 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI--- 154 (184) Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 154 (184) ..+|++++|+|.+...........+...+.......|+++++||.|+............. ........ T Consensus 96 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nk~D~~~~~~~~~~~~~~---------~~~~~~~~~~~ 166 (206) T 6OJF_A 96 TQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEAQRAACMSKI---------TKELLNKRGFP 166 (206) T ss_dssp HSSEEEEEEEEGGGCTHHHHTHHHHHHHHHHHCTTCCEEEEEECGGGCCHHHHHHHHHHH---------HHHTTTCTTSC T ss_pred cCCeEEEEEEECCCChHHHHhHHHHHHHHHHhCCCCCEEEEEehhhcCcHHHHHHHHHHH---------HHHHHHhcCCC Confidence 899999999999875422222223333332222468999999999998743221111100 00111111 Q sequence1 155 GAFGYMECSAKTKD-GVREVFEMATRAA 181 (184) Q Consensus 155 ~~~~~~~~s~~~~~-~i~~~~~~~~~~~ 181 (184) ....++.+|+..+. ++.++++.+.+.+ T Consensus 167 ~~~~~~~~s~~~~~~~~~~l~~~i~~~~ 194 (206) T 6OJF_A 167 AIRDYHFVNATEESDALAKLRKTIINES 194 (206) T ss_dssp CEEEEEECCTTSCCHHHHHHHHHHHHHH T ss_pred ccceeeEEecCCCCHHHHHHHHHHHHHH Confidence 11345678888876 8888777665544
##### No 288 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6OJF_B Leucine-rich repeat serine/threonine-protein kinase 2; Parkinson's disease, LRRK2, GTPase, Dimer; HET: GDP; 1.6A {Homo sapiens} Probab=99.52 E-value=5.2e-18 Score=116.48 Aligned_cols=169 Identities=21% Similarity=0.314 Sum_probs=100.9 Template_Neff=11.500 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENY-VADIEV---DGKQVELALWDTAGLEDYDRLRPLSY 77 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~--~~t~~~~~-~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~ 77 (184) ....+++|+++|.+++|||||++++......... .++..... ...... ......+.+||+||+..+...+..++ T Consensus 16 ~~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~ 95 (206) T 6OJF_B 16 VPYNRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFM 95 (206) T ss_dssp --CCSCEEEEESSTTSSHHHHHHHHHCCTTCCCCCSSSSCSEEEEEEECCCSSCSCCCCEEEEEEECSHHHHHTTSHHHH T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHhcCCccccCccCCccceEeEEeeceecCcCCCeEEEEEEecCCChhhhhcchhhc Confidence 4567899999999999999999999876543211 11110000 111111 11245789999999888777777888 Q sequence1 78 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI--- 154 (184) Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 154 (184) ..+|++++|+|.+...........+...+.......|+++++||.|+............. ........ T Consensus 96 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nk~D~~~~~~~~~~~~~~---------~~~~~~~~~~~ 166 (206) T 6OJF_B 96 TQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEAQRAACMSKI---------TKELLNKRGFP 166 (206) T ss_dssp HHSEEEEEEEEGGGCTHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHH---------HHHTTTCTTSC T ss_pred cCCeEEEEEEECCCChHHHHhHHHHHHHHHHhCCCCCEEEEEehhhcCcHHHHHHHHHHH---------HHHHHHhcCCC Confidence 899999999999875422222223333332222468999999999998743221111100 00111111 Q sequence1 155 GAFGYMECSAKTKD-GVREVFEMATRAA 181 (184) Q Consensus 155 ~~~~~~~~s~~~~~-~i~~~~~~~~~~~ 181 (184) ....++.+|+..+. ++.++++.+.+.+ T Consensus 167 ~~~~~~~~s~~~~~~~~~~l~~~i~~~~ 194 (206) T 6OJF_B 167 AIRDYHFVNATEESDALAKLRKTIINES 194 (206) T ss_dssp EEEEEEECCTTSCCHHHHHHHHHHHHHH T ss_pred ccceeeEEecCCCCHHHHHHHHHHHHHH Confidence 11345678888876 8888777665544
##### No 289 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3IEV_A GTP-binding protein era/RNA complex; ERA, GTPase, KH domain, anti-SD; HET: GNP; 1.9A {Aquifex aeolicus} Probab=99.50 E-value=8.1e-18 Score=122.84 Aligned_cols=161 Identities=18% Similarity=0.142 Sum_probs=95.4 Template_Neff=10.600 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-TVFENYVADIEVDGKQVELALWDTAGLEDY----------DRLRP 74 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~~~~ 74 (184) ....+|+++|.+|+|||||++++.+......... .+................+.+||+||.... ..... T Consensus 8 ~~~~~v~i~G~~~~GKStlin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 87 (308) T 3IEV_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308) T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH T ss_pred ccCeEEEEECCCCCCHHHHHHHHhCCCcceecCCCCCceeEEEEEecCCCCceEEEEECCCCCCccccchhhHHHHHHHH Confidence 4567999999999999999999987654322111 111111111111113357889999997542 22233 Q sequence1 75 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI 154 (184) Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184) ..+..+|++++|+|+++..+.... ..+..... ....|+++++||+|+........... . ...... T Consensus 88 ~~~~~ad~vllvvD~~~~~~~~~~-~~~~~~~~--~~~~p~ilv~nK~D~~~~~~~~~~~~---------~---~l~~~~ 152 (308) T 3IEV_A 88 QSLEEADVILFMIDATEGWRPRDE-EIYQNFIK--PLNKPVIVVINKIDKIGPAKNVLPLI---------D---EIHKKH 152 (308) T ss_dssp HHHHHCSEEEEEEETTTBSCHHHH-HHCCCCCG--GGCCCEEEEEECGGGSSSGGGGHHHH---------H---HHHHHC T ss_pred HHHhhCCEEEEEEECCCCCCcchH-HHHHHHhh--hcCCCEEEEEEccccCCcchhHHHHH---------H---HHHHHC Confidence 455678999999999865333222 11111121 12588999999999986431110000 0 000011 Q sequence1 155 -GAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 155 -~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) ....++.+||+++.|+.+++..+...+ T Consensus 153 ~~~~~~~~iSa~~~~~i~~l~~~l~~~~ 180 (308) T 3IEV_A 153 PELTEIVPISALKGANLDELVKTILKYL 180 (308) T ss_dssp TTCCCEEECBTTTTBSHHHHHHHHHHHS T ss_pred CcccceeeccccCCCCHHHHHHHHHHhC Confidence 125788999999999999988776654
##### No 290 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3R7W_B GTP-binding protein GTR1, GTP-binding protein; Rag GTPases, Gtr1p, Gtr2p, mTOR; HET: MSE, GNP; 2.773A {Saccharomyces cerevisiae} Probab=99.50 E-value=8.3e-18 Score=124.17 Aligned_cols=165 Identities=13% Similarity=0.163 Sum_probs=97.8 Template_Neff=9.000 Q sequence1 10 KLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL---RPLSYPDTDVI 83 (184) Q Consensus 10 ~i~i~G~~~~GKtsli~~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---~~~~~~~~~~~ 83 (184) ||+++|..++||||+++++.+...+... .++.... .. .. .....+.+||+||+..+... +..++..++++ T Consensus 1 kIll~G~~~sGKSSli~~l~~~~~~~~~~~~~~T~~~~-~~--~~-~~~~~~~i~D~pG~~~~~~~~~~~~~~~~~~dai 76 (331) T 3R7W_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPS-LE--HF-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL 76 (331) T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCC-CE--EE-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE T ss_pred CEEEECCCCCCHHHHHHHHhhcCCccccccCCCCCCce-ee--ec-ccCCceEEEECCCCcccCCCcCCHHHHHhccCEE Confidence 6899999999999999999876543211 1111111 00 01 12257899999998776554 66678899999 Q sequence1 84 LMCFSIDSP--DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184) Q Consensus 84 i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184) ++|+|+.+. ..+....+.+.. .....+..|+++++||.|+................. . ............+.++. T Consensus 77 I~ViD~~~~~~~~~~~l~~~i~~-~~~~~~~~~vivvinK~D~~~~~~~~~~~~~i~~~~-~-~~L~~~~~~~~~i~~~~ 153 (331) T 3R7W_B 77 VYVIDSQDEYINAITNLAMIIEY-AYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRT-G-EELLELGLDGVQVSFYL 153 (331) T ss_dssp EEECCCSSCTTHHHHHHHHHHHH-HHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHH-H-HTTSSSSCSCCCEEEEC T ss_pred EEEEcCCcchHHHHHHHHHHHHH-HHHHCCCCcEEEEEecccCCChhhhHHHHHHHHHHH-H-HHHHHcCCCCceeEEEE Confidence 999999864 222222222222 222235789999999999976432111111100000 0 00000000112367889 Q sequence1 162 CSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~ 182 (184) +|+.++ ++.++|+++++.++ T Consensus 154 tS~~d~-si~eafs~vi~~li 173 (331) T 3R7W_B 154 TSIFDH-SIYEAFSRIVQKLI 173 (331) T ss_dssp CCSSSS-HHHHHHHHHHTTSS T ss_pred ecCCCc-cHHHHHHHHHHHHh Confidence 999999 99999988877654
##### No 291 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3PQC_A Probable GTP-binding protein engB; Rossmann Fold, GTPase, GTP binding; HET: GDP, PEG; 1.9A {Thermotoga maritima} Probab=99.50 E-value=8.6e-18 Score=114.53 Aligned_cols=163 Identities=18% Similarity=0.225 Sum_probs=94.2 Template_Neff=11.400 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED----------YDRLRP 74 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~ 74 (184) ....++++++|+.++|||||++++.+........... . ............+.+||++|... +..... T Consensus 20 ~~~~~ki~i~G~~~~GKssl~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~ 96 (195) T 3PQC_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPG-K--TRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195) T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCC-C--CCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHH T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHhCCCcceecCCCC-c--eEEEEEEEeCCEEEEEECCCCCccccChhHHHHHHHHHH Confidence 3556799999999999999999998665322111100 0 11111112245788999999532 223344 Q sequence1 75 LSYPDTDVILMCFSIDSPDS-LENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 153 (184) Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184) .++..++++.+++++.+... .......+...+.. ...|+++|+||+|+........... ........ T Consensus 97 ~~~~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~--~~~p~ivv~~K~D~~~~~~~~~~~~----------~~~~~~~~ 164 (195) T 3PQC_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS--LNIPFTIVLTKMDKVKMSERAKKLE----------EHRKVFSK 164 (195) T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHH----------HHHHHHHS T ss_pred HHHHhcccCcEEEEEeeCCCCCChHHHHHHHHHHH--CCCCEEEEEeCHHHcChhHHHHHHH----------HHHHHHHH Confidence 45566666666666555221 11111122222221 2588999999999976422111111 11111122 Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) .+..+++++|+.++.++.++++++...+. T Consensus 165 ~~~~~~~~~s~~~~~~v~~l~~~i~~~~~ 193 (195) T 3PQC_A 165 YGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195) T ss_dssp SCCSCEEECCTTTCTTHHHHHHHHHHHHC T ss_pred hCCCeEEEeeCCCCCCHHHHHHHHHHHHh Confidence 23367899999999999999999887654
##### No 292 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6OT0_A Smoothened homolog, Guanine nucleotide-binding protein; GPCR, Complex, Hedgehog signaling, SIGNALING; HET: CO1; 3.9A {Homo sapiens} Probab=99.49 E-value=1.1e-17 Score=124.65 Aligned_cols=128 Identities=16% Similarity=0.203 Sum_probs=79.6 Template_Neff=10.000 Q sequence1 56 VELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD----------SLENIPEKWTPEVKHFC-PNVPIILVGNKKDL 124 (184) Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~~~~vv~nK~D~ 124 (184) +.+.+||++|+..+...|..++..++++++|+|+++.. ++......+........ ...|+++++||.|+ T Consensus 194 ~~~~i~D~~g~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 273 (354) T 6OT0_A 194 LHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHASMKLFDSICNNKWFTDTSIILFLNKKDL 273 (354) T ss_dssp EEEEECCCCCCSSSCCSGGGGSCSCSEEEEEECSTTSSSBCTTSSCCBHHHHHHHHHHHHHTCTTCSSCEEEEEECCCTT T ss_pred eEEEEEEeCCCcchHHHHHHhcCCCCEEEEEEEhhhcCcccccCccccHhHHHHHHHHHHhcCHhhcCCEEEEEecccch Confidence 45779999999888788888889999999999998866 45444444443332221 26899999999998 Q sequence1 125 RNDEHTRRELAKMKQE---PVKPEEGRDMANR----------IGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 125 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----------~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) .........+...... .........+... ...+.++++||+++.|+.++|.++...+++ T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 345 (354) T 6OT0_A 274 FEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCSTDTKNVQFVFDAVTDVIIK 345 (354) T ss_dssp HHHHHHHSCTTTTCSCCCSCSCHHHHHHHHHHHHHTTCCSCSSCCCBCCCCCSSTHHHHHHHHHHHHHHHHH T ss_pred hHHHHccCCceecccCcCCCCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCHHHHHHHHHHHHHHHHH Confidence 7642110000000000 0000000001000 013568899999999999999988877653
##### No 293 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3W5I_B Ferrous iron transport protein B; G PROTEIN, IRON TRANSPORT, GTPASE; HET: SO4; 2.15A {Gallionella capsiferriformans} Probab=99.49 E-value=1.1e-17 Score=115.16 Aligned_cols=154 Identities=18% Similarity=0.192 Sum_probs=90.6 Template_Neff=10.700 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDY------DRLRPLSYPD 79 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~------~~~~~~~~~~ 79 (184) ...+|+++|..++|||||++.+..........+..... ....... ....+.+||+||.... ...+..++.. T Consensus 2 ~~~~I~vvG~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiD~pg~~~~~~~~~~~~~~~~~~~~ 79 (204) T 3W5I_B 2 QFKRIALLGMPNTGKSTLFNRMTGGAARVGNWPGITVELLSGKILL--GADMVEIIDLPGIYDLHGFSDDEQVVRHFLHD 79 (204) T ss_dssp -CEEEEEEECTTSSHHHHHHHHTTTCCEEECCTTCSSCEEEEEEEE--TTEEEEEEECCCCSCTTCCSHHHHHHHHHHHH T ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccCCCCCCceeeeeEEEEE--CCceEEEEECCCCcccCCCCchHHHHHHHHhh Confidence 45789999999999999999998765433222211111 1111111 2236789999986432 1233334433 Q sequence1 80 --TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184) Q Consensus 80 --~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184) +|++++|+|.++...... +...+.. ...|+++|+||.|+........ ....++...+ + T Consensus 80 ~~~d~ii~v~d~~~~~~~~~----~~~~l~~--~~~~~v~V~nK~D~~~~~~~~~-------------~~~~~~~~~~-~ 139 (204) T 3W5I_B 80 NVPDLALVILNATQIERQMS----LLLQLKQ--LNMNIVVLLNMSDEAKQYGITI-------------DSRKMSELLQ-I 139 (204) T ss_dssp SCCSEEEEEEEGGGHHHHHH----HHHHHHH--TTCCEEEEEECHHHHHHTTCEE-------------CHHHHHHHHT-S T ss_pred cCCCEEEEEEechhHHHHHH----HHHHHHH--cCCcEEEEEeCHHHhhhcCCcc-------------cHHHHHHHhC-C Confidence 789999999876433221 1122211 2588999999999987432110 0111122222 5 Q sequence1 158 GYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) +++.+|++++.|+.+++.++.+.+. T Consensus 140 ~~~~~Sa~~~~~i~~~~~~l~~~~~ 164 (204) T 3W5I_B 140 PVFQLSGKYGTGYQEALQAVTRALR 164 (204) T ss_dssp CEEECCC---TTHHHHHHHHHHHTS T ss_pred CEEEeeCCCCCCHHHHHHHHHHHcc Confidence 6889999999999999998877654
##### No 294 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3W5J_A Ferrous iron transport protein B; G PROTEIN, IRON TRANSPORT, GTPASE; HET: GDP; 1.932A {Gallionella capsiferriformans} Probab=99.49 E-value=1.3e-17 Score=115.00 Aligned_cols=154 Identities=18% Similarity=0.188 Sum_probs=89.4 Template_Neff=10.500 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYD------RLRPLSYPD 79 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~~ 79 (184) +..+|+++|..++|||||++++....+.....+..... ....+.. ....+.+||+||..... ..+..++.. T Consensus 2 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 79 (204) T 3W5J_A 2 QFKRIALLGMPNTGKSTLFNRMTGGAARVGNWPGITVELLSGKILL--GADMVEIIDLPGIYDLHGFSDDEQVVRHFLHD 79 (204) T ss_dssp CCEEEEEEESTTSSHHHHHHHHHSSCCEECCCTTCCCCEEEEEEEE--TTEEEEEEECCCCSCTTCCSHHHHHHHHHHHH T ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccCCCCCcceeeeeEEEEE--CCceEEEEECCCccccCCCCchHHHHHHHHhh Confidence 45789999999999999999999775433222211111 1111111 23467899999975432 222333333 Q sequence1 80 --TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184) Q Consensus 80 --~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184) ++++++|+|.++...... +...+.. ...|+++|+||+|+........ ....++... .. T Consensus 80 ~~~d~il~v~d~~~~~~~~~----~~~~l~~--~~~~~vlv~nK~D~~~~~~~~~-------------~~~~~~~~~-~~ 139 (204) T 3W5J_A 80 NVPDLALVILNATQIERQMS----LLLQLKQ--LNMNIVVLLNMSDEAKQYGITI-------------DSRKMSELL-QI 139 (204) T ss_dssp SCCSEEEEEEEGGGHHHHHH----HHHHHHH--TTCCEEEEEESHHHHHHTTCEE-------------CHHHHHHHH-TS T ss_pred cCCCEEEEEEechhHHHHHH----HHHHHHH--cCCCEEEEEeCHHHhhhcCCcc-------------cHHHHHHHh-CC Confidence 688999988875332211 1111211 2578999999999986432110 011111122 25 Q sequence1 158 GYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) .++.+|++++.|+.++|.++.+.+. T Consensus 140 ~~~~~Sa~~~~gi~~~~~~l~~~~~ 164 (204) T 3W5J_A 140 PVFQLSGKYGTGYQEALQAVTRALR 164 (204) T ss_dssp CEEECC----CCHHHHHHHHHHHHS T ss_pred CEEEeeCCCCCCHHHHHHHHHHHcc Confidence 6889999999999999998877654
##### No 295 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3IBY_D Ferrous iron transport protein B; G protein, G domain, iron; 2.5A {Legionella pneumophila} Probab=99.49 E-value=1.4e-17 Score=118.49 Aligned_cols=152 Identities=13% Similarity=0.130 Sum_probs=93.9 Template_Neff=10.700 Q sequence1 9 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------------LRPLS 76 (184) Q Consensus 9 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------------~~~~~ 76 (184) .+|+++|.+|+|||||++++.+........+...... ...........+.+||+||...... ..... T Consensus 2 ~~i~lvG~~~~GKStl~n~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~ivD~pG~~~~~~~~~~~~~~~~~~~~~~~ 80 (256) T 3IBY_D 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEK-KTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256) T ss_dssp CEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSSEE-EEEEEEETTEEEEEEECCCCSCSCCC----CHHHHHHHHHHH T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCeeee-EEEEEEECCeEEEEEECCCCcccccccCCCCHHHHHHHHHHh Confidence 5799999999999999999987654322222111111 1111112234788999999764332 12223 Q sequence1 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184) Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184) ...+|++++|+|.++......... .+. ....|+++++||+|.......... ...++...+ T Consensus 81 ~~~~d~ii~v~d~~~~~~~~~l~~----~l~--~~~~p~viv~nk~D~~~~~~~~~~-------------~~~l~~~l~- 140 (256) T 3IBY_D 81 DLEYDCIINVIDACHLERHLYLTS----QLF--ELGKPVVVALNMMDIAEHRGISID-------------TEKLESLLG- 140 (256) T ss_dssp HSCCSEEEEEEEGGGHHHHHHHHH----HHG--GGTSCEEEEEECHHHHHHTTCEEC-------------HHHHHHHHT- T ss_pred ccCCCEEEEEEeccchhHHHHHHH----HHH--HhCCCEEEEEechHHHHHcCCccC-------------HHHHHHHHC- Confidence 345899999999987543333211 111 136899999999998764322111 111122223 Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) .+++.+|+.++.|+.+++..+.+.+ T Consensus 141 ~~~~~~sa~~~~gi~~l~~~i~~~~ 165 (256) T 3IBY_D 141 CSVIPIQAHKNIGIPALQQSLLHCS 165 (256) T ss_dssp SCEEECBGGGTBTHHHHHHHHTTCC T ss_pred CcEEEeecCCCCCHHHHHHHHHHHh Confidence 6789999999999999988776654
##### No 296 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2QU8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, plasmodium falciparum, Structural; HET: GDP; 2.01A {Plasmodium falciparum} Probab=99.48 E-value=1.4e-17 Score=116.44 Aligned_cols=168 Identities=18% Similarity=0.113 Sum_probs=98.2 Template_Neff=10.900 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR---------LRPL 75 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~ 75 (184) ..+.++|+++|..++|||+|++++..........+...... ...........+.+||++|...... .+.. T Consensus 26 ~~~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~~ 104 (228) T 2QU8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNL-YVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228) T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CE-EEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHH T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCccccee-EEEEEecCCcEEEEEECCCCCCccccCcchhHHHHHHH Confidence 45678999999999999999999986654322111111111 1111223346789999999764321 2333 Q sequence1 76 SYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR- 153 (184) Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 153 (184) +...+|++++|+|+++..++.... ..+...........|+++|+||.|+........... .....+... T Consensus 105 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~~K~D~~~~~~~~~~~~---------~~~~~~~~~~ 175 (228) T 2QU8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNK---------LLIKQILDNV 175 (228) T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHH---------HHHHHHHHHC T ss_pred HHhhCCEEEEEEeCchhcCCCHHHHHHHHHHHhhhcCCCcEEEEEEchHhCCccccccchH---------HHHHHHHHhc Confidence 445689999999998755443211 111121211124689999999999876432111000 000111111 Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ...+.++.+|++++.++.+++.++.+.+. T Consensus 176 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 204 (228) T 2QU8_A 176 KNPIKFSSFSTLTGVGVEQAKITACELLK 204 (228) T ss_dssp CSCEEEEECCTTTCTTHHHHHHHHHHHHH T ss_pred CCCceEEEeeccCCCCHHHHHHHHHHHHh Confidence 11257889999999999999999887664
##### No 297 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3IBY_B Ferrous iron transport protein B; G protein, G domain, iron; 2.5A {Legionella pneumophila} Probab=99.48 E-value=1.4e-17 Score=118.46 Aligned_cols=152 Identities=13% Similarity=0.138 Sum_probs=93.9 Template_Neff=10.700 Q sequence1 9 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------------LRPLS 76 (184) Q Consensus 9 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------------~~~~~ 76 (184) .+|+++|.+|+|||+|++++.+........+..... ............+.+||+||...+.. ..... T Consensus 2 ~~i~lvG~~~~GKstl~~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~i~D~pG~~~~~~~~~~~~~~~~~~~~~~~ 80 (256) T 3IBY_B 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVE-KKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256) T ss_dssp CEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSE-EEEEEEEETTEEEEEEECCCCSCSCCCSSSCCHHHHHHHHHHH T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeeccCCCCcee-eEEEEEEECCeEEEEEECCCccccccccCCCCHHHHHHHHHHH Confidence 589999999999999999998765432222111111 11111112234788999999764432 12223 Q sequence1 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184) Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184) ...+|++++|+|.+.......... .+.. ...|+++++||+|.......... ...+....+ T Consensus 81 ~~~~d~ii~v~d~~~~~~~~~l~~----~l~~--~~~p~ivv~nk~D~~~~~~~~~~-------------~~~l~~~~~- 140 (256) T 3IBY_B 81 DLEYDCIINVIDACHLERHLYLTS----QLFE--LGKPVVVALNMMDIAEHRGISID-------------TEKLESLLG- 140 (256) T ss_dssp HSCCSEEEEEEEGGGHHHHHHHHH----HHHT--TCSCEEEEEECHHHHHHTTCCBC-------------HHHHHHHHT- T ss_pred ccCCCEEEEEEecccHHHHHHHHH----HHHH--hCCCEEEEEecHHHHHHcCCcCC-------------HHHHHHHHC- Confidence 345899999999987543333221 1111 35889999999999764321110 111222223 Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) .+++.+|+.++.|+.+++.++.+.+ T Consensus 141 ~~~~~~sa~~~~gv~~l~~~i~~~~ 165 (256) T 3IBY_B 141 CSVIPIQAHKNIGIPALQQSLLHCS 165 (256) T ss_dssp SCEEECBGGGTBSHHHHHHHHHTCC T ss_pred CcEEEeecCCCCCHHHHHHHHHHHh Confidence 6789999999999999988877654
##### No 298 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3PQC_B Probable GTP-binding protein engB; Rossmann Fold, GTPase, GTP binding; HET: PEG, GDP; 1.9A {Thermotoga maritima} Probab=99.48 E-value=1.5e-17 Score=113.37 Aligned_cols=163 Identities=17% Similarity=0.225 Sum_probs=91.3 Template_Neff=11.300 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED----------YDRLRP 74 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~ 74 (184) ....++|+++|..|+|||||++++.+........... . ............+.+||++|... +...+. T Consensus 20 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~ 96 (195) T 3PQC_B 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPG-K--TRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195) T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHTTTTBCCCSCCCC-C--SSCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHH T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceecCCCC-C--eEEEEEEEeCCEEEEEEcCCCCccccchhhHHHHHHHHH Confidence 4566899999999999999999998765432211110 0 01111112234678999999532 223344 Q sequence1 75 LSYPDTDVILMCFSIDSPD-SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 153 (184) Q Consensus 75 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184) .++..++.+.+++.+.+.. ........+...+.. ...|+++|+||.|+............ ....... T Consensus 97 ~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nk~D~~~~~~~~~~~~~----------~~~~~~~ 164 (195) T 3PQC_B 97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS--LNIPFTIVLTKMDKVKMSERAKKLEE----------HRKVFSK 164 (195) T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHH----------HHHHHHT T ss_pred HHHHhhhcCcEEEEEeeCCCCCCHHHHHHHHHHHH--cCCCEEEEeecHHHcChhHHHHHHHH----------HHHHHHH Confidence 4555544444444444321 111111122222221 25899999999999764211111110 1111112 Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) .....++.+|+.++.++.++++++...+. T Consensus 165 ~~~~~~~~~sa~~~~~v~~l~~~i~~~i~ 193 (195) T 3PQC_B 165 YGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195) T ss_dssp TCCCCEEECCTTTCTTHHHHHHHHHHHHH T ss_pred hCCceEEEccCCCCCCHHHHHHHHHHHhh Confidence 22357889999999999999999887654
##### No 299 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5DO9_C Guanine nucleotide-binding protein G(q) subunit; GTP-Binding Protein alpha subunits, Gq-G11; HET: ALF, GDP; 2.6A {Mus musculus} Probab=99.48 E-value=1.7e-17 Score=121.75 Aligned_cols=129 Identities=19% Similarity=0.216 Sum_probs=79.9 Template_Neff=9.700 Q sequence1 55 QVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI----------DSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKD 123 (184) Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D 123 (184) ...+.+||++|+..+...+..++..++++++|+|+ .+...+......+..+.... ....|+++++||+| T Consensus 162 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~iiiv~nK~D 241 (314) T 5DO9_C 162 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 241 (314) T ss_dssp SCEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEEGGGGGCBCSSSSSCBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH T ss_pred CeEEEEEEcCCCchhhHHHHHHhcCCCEEEEEEehHHhchhhcCCCCcchhHHHHHHHHHHhhCHHHhccEEEEEeecHH Confidence 35788999999887777788888899999999998 55455555444444444321 12689999999999 Q sequence1 124 LRNDEHTRRELAKMKQE----PVKPEEGRDMA---------NRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 124 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) ................. .........+. .....+.++.+|++++.|+.++|.++.+.+++ T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~f~~l~~~~~~ 314 (314) T 5DO9_C 242 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 314 (314) T ss_dssp HHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHCCCCCTC T ss_pred HHHHHHhcccHHHhCCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCeeEEEEecCCCHHHHHHHHHHHHHHhhC Confidence 87643110000000000 00000000000 00123578899999999999999999887653
##### No 300 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1UDX_A the GTP-binding protein Obg; GTP-binding protein, Obg, TGS domain; 2.07A {Thermus thermophilus} SCOP: d.242.1.1, b.117.1.1, c.37.1.8 Probab=99.48 E-value=1.7e-17 Score=126.10 Aligned_cols=157 Identities=22% Similarity=0.242 Sum_probs=95.3 Template_Neff=9.200 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRL-------RPLSYP 78 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~~ 78 (184) ...+|+++|.+++|||||++++..........+... ......+.. .....+.+||+||+...... +..++. T Consensus 156 ~~~~V~lvG~~~aGKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~D~pG~~~~~~~~~~l~~~~l~~l~ 234 (416) T 1UDX_A 156 LIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEV-SEEERFTLADIPGIIEGASEGKGLGLEFLRHIA 234 (416) T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEEC-SSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHT T ss_pred cceeEEEEcCCCCCHHHHHHHHhhcCCCccCCCCCccCCceEEEEe-cCCceEEEEecCCccCCccCCCCCcHHHHHHHh Confidence 456899999999999999999987653222111111 111111111 12457889999997654322 225667 Q sequence1 79 DTDVILMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIG 155 (184) Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184) .++++++|+|+++. .+... ..+...+... ....|+++|+||+|+........ .. ..... . T Consensus 235 ~~d~il~VvD~~~~-~~~~~-~~~~~~l~~~~~~~~~~p~ivV~nK~Dl~~~~~~~~-~~-------------~~l~~-~ 297 (416) T 1UDX_A 235 RTRVLLYVLDAADE-PLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKA-LA-------------DALAR-E 297 (416) T ss_dssp SSSEEEEEEETTSC-HHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHH-HH-------------HHHHT-T T ss_pred ccCEEEEEEeCCCC-HHHHH-HHHHHHHHhcCHHHhcCCeEEEecccccCcHHHHHH-HH-------------HHHHH-C Confidence 88999999999872 22222 2223222221 12589999999999976321110 00 00001 1 Q sequence1 156 AFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 156 ~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) ...++++|++++.++.+++..+...+ T Consensus 298 ~~~~~~iSa~~~~gi~~l~~~i~~~~ 323 (416) T 1UDX_A 298 GLAVLPVSALTGAGLPALKEALHALV 323 (416) T ss_dssp TSCEEECCTTTCTTHHHHHHHHHHHH T ss_pred CCcEEEecCCCCCCHHHHHHHHHHHH Confidence 25688999999999999988776654
##### No 301 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1SHZ_D Guanine Nucleotide-Binding Protein Galpha(13):Galpha(i1) Chimera; SIGNAL TRANSDUCTION, PROTEIN COMPLEX, SIGNALING; HET: ALF, GDP; 2.85A {Mus musculus, Rattus norvegicus} SCOP: a.66.1.1, c.37.1.8 Probab=99.48 E-value=1.8e-17 Score=122.91 Aligned_cols=128 Identities=17% Similarity=0.227 Sum_probs=78.9 Template_Neff=9.600 Q sequence1 56 VELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD----------SLENIPEKWTPEVKHF-CPNVPIILVGNKKDL 124 (184) Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~ 124 (184) ..+.+||++|+..+...+..++..++++++|+|+++.. .+......+....... ....|+++++||+|+ T Consensus 180 ~~l~i~D~~G~~~~~~~~~~~~~~~~~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 259 (340) T 1SHZ_D 180 LHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQTNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 259 (340) T ss_dssp EEEEEEECCCSHHHHTTTGGGCSSCSEEEEEEESTTSSCBCSSSTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHH T ss_pred eEEEEEECCCCchhhHHHHHHccCCCEEEEEEeHHHHcHhhccCcCCcHHHHHHHHHHHHHcChhhcCCeEEEEeccHHH Confidence 46779999999888777888888999999999999865 4444444444333221 126889999999999 Q sequence1 125 RNDEHTRRELAKMKQ---EPVKPEEGRDMAN--------R--IGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 125 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--------~--~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) ............... ..........+.. . ...+.++.+|+.++.++.++|+.+.+.+++ T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~i~~~i~~ 331 (340) T 1SHZ_D 260 FEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 331 (340) T ss_dssp HHHHHHHSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEECCCTTCHHHHHHHHHHHHHHHHH T ss_pred HHHHHhcCChhHcCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCCeeEEEEEcCCCHHHHHHHHHHHHHHHHH Confidence 863210000000000 0000000000000 0 013568899999999999999998887754
##### No 302 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6HLU_A PROTEIN; GTPase, LRRK2, Roco proteins, hydrolase; 3.29A {Chlorobaculum tepidum} Probab=99.47 E-value=1.9e-17 Score=137.42 Aligned_cols=160 Identities=21% Similarity=0.269 Sum_probs=97.4 Template_Neff=10.400 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI---------EVDGKQVELALWDTAGLEDYDRLRPLS 76 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~---------~~~~~~~~~~i~D~~g~~~~~~~~~~~ 76 (184) .+.++|+++|.+|+|||||++++.+..+.....++......... ........+.+||++|++.+...+..+ T Consensus 478 ~~~~kv~lvG~~g~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 557 (974) T 6HLU_A 478 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 557 (974) T ss_dssp CCEEEEEEECSSTTTHHHHHTTSSCC----------CCCCEEEEGGGSTTCTTCGGGTTCEEEEECCSSCCTTTTTCTHH T ss_pred cceeEEEEECCCCCCHHHHHHHHhCCCCCCcccccceeeEEeeecCCCCCCCCCcccceEEEEEEecCcCchhhhhcccc Confidence 45689999999999999999999877654332222111111000 001123468999999999998888888 Q sequence1 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184) Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184) +..++++++|+|..+.... ..|...+.......|+++|+||.|......... .......... . T Consensus 558 ~~~~~~~ilV~d~~~~~~~----~~~~~~l~~~~~~~~vilV~~k~D~~~~~~~~~------------~~~~~~~~~~-~ 620 (974) T 6HLU_A 558 MTRSSVYMLLLDSRTDSNK----HYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQ------------KKINERFPAI-E 620 (974) T ss_dssp HHSSEEEEEEECSSTTTTS----HHHHHHHHHHTCSSCEEEEECCTTTCTTCCCCH------------HHHHHHSGGG-T T ss_pred cCCCeEEEEEEeCCCcchH----HHHHHHHHHHCCCCCEEEEeeccccCccccccH------------HHHHHHhhhh-c Confidence 8899999999998865432 334444443334689999999999876432110 0001111111 1 Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ..++.+|++++.++.+++.++.+.+. T Consensus 621 ~~~~~isa~~~~~~~~l~~~l~~~~~ 646 (974) T 6HLU_A 621 NRFHRISCKNGDGVESIAKSLKSAVL 646 (974) T ss_dssp TCEEECCC-----CCSHHHHHHHHHT T ss_pred cceeecccCCCCCHHHHHHHHHHhhc Confidence 46888999999999999988877654
##### No 303 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3A1W_A Iron(II) transport protein B; FeoB, iron transporter, small GTPase; 1.9001A {Thermotoga maritima} Probab=99.47 E-value=2e-17 Score=109.90 Aligned_cols=156 Identities=16% Similarity=0.109 Sum_probs=93.6 Template_Neff=11.700 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD------RLRPLSYP- 78 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~- 78 (184) .+.++|+++|..++|||||++++..........+.. ...............+.+||++|..... ..+..+.. T Consensus 3 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (168) T 3A1W_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGV-TVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (168) T ss_dssp -CEEEEEEECCSSSSHHHHHHHHHTTCEEEEECTTS-SCEEEEEEEEETTEEEEEEECCCCSCTTSSSHHHHHHHHHHHT T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCceeeCCCCc-eecceeeEEEeCCEEEEEEeCCCCCCCCCchhhHHHHHHHHHh Confidence 457899999999999999999998654322111111 0011111122234578899999976432 12233332 Q sequence1 79 -DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184) Q Consensus 79 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184) .+|++++|+|..+...... .+.... ....|+++|+||+|+......... ...+....+ . T Consensus 82 ~~~~~i~~v~d~~~~~~~~~---~~~~~~---~~~~~~i~v~~k~d~~~~~~~~~~-------------~~~~~~~~~-~ 141 (168) T 3A1W_A 82 GDADLVILVADSVNPEQSLY---LLLEIL---EMEKKVILAMTAIDEAKKTGMKID-------------RYELQKHLG-I 141 (168) T ss_dssp TCSSEEEEEEESSSCHHHHH---HHHHHH---HHCSCEEEEEECHHHHHC----CC-------------HHHHHHHHT-S T ss_pred CCCCEEEEEEECCCchhhHH---HHHHHH---HcCCCEEEEEEcHHHhcccchHHH-------------HHHHHHHhC-C Confidence 6899999999887542221 112222 125789999999998764321110 001111122 5 Q sequence1 158 GYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) .++++|++.+.+++++++++.+.+. T Consensus 142 ~~~~~s~~~~~~i~~~~~~l~~~~~ 166 (168) T 3A1W_A 142 PVVFTSSVTGEGLEELKEKIVEYAQ 166 (168) T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHC T ss_pred CEEEeeeccCCCHHHHHHHHHHHHh Confidence 6889999999999999998877654
##### No 304 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1ZCA_A Galphai/12; GTP-binding, Lipoprotein, Membrane, Palmitate, Transducer; HET: GDP, ALF; 2.9A {Mus musculus} SCOP: c.37.1.8, a.66.1.1 Probab=99.47 E-value=2.1e-17 Score=123.34 Aligned_cols=128 Identities=20% Similarity=0.139 Sum_probs=80.2 Template_Neff=9.500 Q sequence1 56 VELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD----------SLENIPEKWTPEVKHFC-PNVPIILVGNKKDL 124 (184) Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~~~~vv~nK~D~ 124 (184) +.+.+||++|+..+...|..++..++++++|+|+++.. ++......+..+..... ...|+++++||+|+ T Consensus 199 ~~l~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~piiiv~nK~Dl 278 (359) T 1ZCA_A 199 IPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRLVESMNIFETIVNNKLFFNVSIILFLNKMDL 278 (359) T ss_dssp EEEEEEEECCSHHHHTTGGGTTTTCSEEEEEEETTCTTCBCSSSSSSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHH T ss_pred eEEEEEECCCCchhHhhHHHHhcCCCEEEEEEecccchhhhccCCCCccHHHHHHHHHHHHhCccccCCCEEEEEeCcch Confidence 56789999999888778888888999999999999765 45544444444332221 26899999999998 Q sequence1 125 RNDEHTRRELAKMKQEP----VKPEEGRDMANR---------IGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 125 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---------~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) ...........+..... ........+... ...+.++.+|+.++.++.++|.++...+++ T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~i~~ 350 (359) T 1ZCA_A 279 LVEKVKSVSIKKHFPDFKGDPHRLEDVQRYLVQCFDRKRRNRSKPLFHHFTTAIDTENIRFVFHAVKDTILQ 350 (359) T ss_dssp HHHHHHHSCSTTTCTTCCSCTTCHHHHHHHHHHHHHHTCSCTTSCCCEEECCTTCHHHHHHHHHHHHHHHHH T ss_pred hhHHhhcCCHHHhCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCeeeEEEeeCCCchhHHHHHHHHHHHHHH Confidence 76422111000000000 000000001000 123568899999999999999998877653
##### No 305 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4FMC_F ROrf2, Ras-related protein Rab-1A; alpha-beta fold, Rab1-GAP, Rab1, PROTEIN; HET: PGE, AF3, GDP; 2.8A {Escherichia coli} Probab=99.47 E-value=2.1e-17 Score=101.87 Aligned_cols=115 Identities=32% Similarity=0.605 Sum_probs=38.5 Template_Neff=13.200 Q sequence1 11 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI 89 (184) Q Consensus 11 i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 89 (184) |+++|++++|||++++++..........+..... .......++....+.+||++|...+...+..+...++++++++++ T Consensus 1 i~~~G~~~~GKs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (117) T 4FMC_F 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 80 (117) T ss_dssp CCCCCCTTSSSHHH---HHC------CCCCCSEEC--------------CCCEECCSGGGSC----------------CT T ss_pred CEEECCCCCCHHHHHHHHhCCCCCcccCCCceeeEEEEEEEECCEEEEEEEEeCCCchHhHHHHHHHhccCCEEEEEeeC Confidence 5789999999999999988665433222211111 112222233345788999999887776777777889999999999 Q sequence1 90 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 125 (184) Q Consensus 90 ~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~ 125 (184) ++..++......+...........|+++++||.|+. T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~ 116 (117) T 4FMC_F 81 TDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 116 (117) T ss_dssp TC-CTTGGGTTSTTTHHHHSC--------------- T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCCEEEEEecccCC Confidence 876555444333333222223467899999999974
##### No 306 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4TMW_B eIF5B; Translation factor, GTPase, Subunit joining; HET: GTP; 1.55A {Chaetomium thermophilum} Probab=99.47 E-value=2.2e-17 Score=122.21 Aligned_cols=119 Identities=19% Similarity=0.173 Sum_probs=77.6 Template_Neff=11.000 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADI----------------EVDGKQVELALWDTAGL 66 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~----------------~~~~~~~~~~i~D~~g~ 66 (184) .....++|+++|..++|||||+++|..........+...... ...+ ........+.+||+||+ T Consensus 6 ~~~~~~~I~v~G~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~pG~ 85 (345) T 4TMW_B 6 DNLRSPICCILGHVDTGKTKLLDKIRQTNVQEGEAGGITQQIGATYFPVEAIKQKTAVVNKDGKFEFKVPGLLIIDTPGH 85 (345) T ss_dssp GGBCCCEEEEEESTTSSHHHHHHHHHTCCHHHHSGGGCCCSCEEEEEEHHHHHHHTGGGCTTSCCCCCSSEEEEEECCCS T ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHhhcCcCCCCCCcccceeEeEEcCHHHHhhhcceecCCCCeeccCCcEEEEECCCC Confidence 356678999999999999999999987654322111110000 0000 01111235899999999 Q sequence1 67 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184) Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184) +.+...+..++..+|++++|+|+++....... +.+. .+.. ...|+++++||+|+.. T Consensus 86 ~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~~~-e~l~-~~~~--~~~p~ivv~nK~D~~~ 141 (345) T 4TMW_B 86 ESFSNLRSRGSSLCNIAILVVDIMHGLEPQTI-ESLR-LLRE--RKTPFVVALNKIDRLY 141 (345) T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHH-HHHH--TTCCEEEEEECGGGST T ss_pred HHHhHHHHhchhcCCEEEEEEeCCCCCCHHHH-HHHH-HHHH--cCCCEEEEEeChhhcc Confidence 88887787888899999999999874332221 2222 2221 2578999999999875
##### No 307 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1PUI_A Probable GTP-binding protein engB; STRUCTURAL GENOMICS, NYSGXRC T16, GTPASE; HET: SO4; 2.0A {Escherichia coli} SCOP: c.37.1.8 Probab=99.47 E-value=2.2e-17 Score=114.19 Aligned_cols=163 Identities=14% Similarity=0.091 Sum_probs=92.8 Template_Neff=10.800 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLED----------YDRL 72 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~----------~~~~ 72 (184) .....++|+++|..++|||||++++................. ...... ...+.+||++|... +... T Consensus 22 ~~~~~~~v~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~D~~g~~~~~~~~~~~~~~~~~ 98 (210) T 1PUI_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV---ADGKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210) T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEE---ETTEEEEECCCCC------CCHHHHHHH T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCceeEEEEEEe---CCCeEEEeCCCCCcccCCHHHHHHHHHH Confidence 356778999999999999999999887643221111110110 111111 12578999999532 2222 Q sequence1 73 RPLSYPD---TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 149 (184) Q Consensus 73 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (184) ...++.. ++++++|+|.++.... ....+...... ...|+++|+||+|+.............. .. T Consensus 99 ~~~~~~~~~~~d~ii~v~d~~~~~~~--~~~~~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~~~---------~~ 165 (210) T 1PUI_A 99 LGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVR---------EA 165 (210) T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHH---------HH T ss_pred HHHHHHhCCCccEEEEEeeCCCCCCH--HHHHHHHHHHH--CCCcEEEEEeCHHhCChhHHHHHHHHHH---------HH Confidence 2223333 8999999999864221 11222222221 4689999999999987432211111100 00 Q sequence1 150 MANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 150 ~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) .......+.++.+|+.++.++.+++.++.+.+. T Consensus 166 l~~~~~~~~~~~~S~~~~~~~~~l~~~i~~~~~ 198 (210) T 1PUI_A 166 VLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210) T ss_dssp HGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC T ss_pred HHhcCCCCeEEEeecCcccCHHHHHHHHHHHHh Confidence 011112367899999999999999998887654
##### No 308 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3A1S_B Iron(II) transport protein B; FeoB, iron transporter, small GTPase; HET: MPD, MSE, GDP; 1.5A {Thermotoga maritima} Probab=99.47 E-value=2.2e-17 Score=117.45 Aligned_cols=155 Identities=16% Similarity=0.114 Sum_probs=95.1 Template_Neff=11.000 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD------RLRPLSYP- 78 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~- 78 (184) .+.++|+++|.+|+|||||++++..........+...... ...........+.+||+||..... ..+..++. T Consensus 3 ~~~~~i~vvG~~~~GKstl~~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~i~D~pG~~~~~~~~~~~~~~~~~~~~ 81 (258) T 3A1S_B 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEK-KEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258) T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSSCEE-EEEEEEETTEEEEEEECCCCSSSSCCSHHHHHHHHHHHH T ss_pred CcceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCCCcee-EEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHHc Confidence 4678999999999999999999987654222111111111 111111123478899999976432 23333433 Q sequence1 79 -DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184) Q Consensus 79 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184) .+|++++|+|.++...... .+.... ....|+++|+||+|+.......... ..+....+ . T Consensus 82 ~~~d~ii~v~d~~~~~~~~~---~~~~~~---~~~~~~ivv~nk~D~~~~~~~~~~~-------------~~l~~~~~-~ 141 (258) T 3A1S_B 82 GDADLVILVADSVNPEQSLY---LLLEIL---EMEKKVILAMTAIDEAKKTGMKIDR-------------YELQKHLG-I 141 (258) T ss_dssp SCCSEEEEEEESSSCHHHHH---HHHHHH---TTTCCEEEEEECHHHHHHTTCCBCH-------------HHHHHHHC-S T ss_pred CCCCEEEEEecCCCHHHHHH---HHHHHH---hcCCcEEEEeecHHHHHHcCCcccH-------------HHHHHHHC-C Confidence 6899999999987542211 112222 1258999999999987643221110 11112222 5 Q sequence1 158 GYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) +++.+|+.++.|+.+++.++.+.+ T Consensus 142 ~~~~~sa~~~~~~~~l~~~l~~~~ 165 (258) T 3A1S_B 142 PVVFTSSVTGEGLEELKEKIVEYA 165 (258) T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH T ss_pred CEEEeecCCCCCHHHHHHHHHHHH Confidence 788999999999999998876654
##### No 309 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5DI3_B ADP-ribosylation factor-like protein 13B, ARF-like; G-protein, ADP ribosylation like protein; HET: GNP; 2.5A {Chlamydomonas reinhardtii} Probab=99.47 E-value=2.3e-17 Score=117.47 Aligned_cols=118 Identities=18% Similarity=0.266 Sum_probs=80.8 Template_Neff=11.400 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) ...++|+++|.+|+|||||++++........ .++.... ..........+.+||+||...+...+..++..+|++++ T Consensus 2 ~~~~~i~vvG~~~~GKssl~~~l~~~~~~~~-~~~~~~~---~~~~~~~~~~~~l~D~pg~~~~~~~~~~~~~~~~~~l~ 77 (263) T 5DI3_B 2 PRKITIALLGLDNAGKTTLLNSIQGEVDRDT-TPTFGFN---STTLNEGKYKIEVFDLGGGKNIRGVWKKYLAEVHAIVY 77 (263) T ss_dssp CEEEEEEEESCTTSCHHHHHHHTTTCCSCCC-CCCCSCC---EEEEEETTEEEEEEECCCSTTTGGGGGGTGGGCSEEEE T ss_pred CCcEEEEEECCCCCCHHHHHHHHcCCCCCCC-CCceEEe---EEEEecCCEEEEEEECCCCHHHHHHHHHHcCCCCEEEE Confidence 3568999999999999999999886533211 1111111 11112234578899999988777777778889999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRND 127 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~ 127 (184) |+++++..++......+...+... ....|+++++||.|+... T Consensus 78 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~D~~~~ 120 (263) T 5DI3_B 78 VVDAADPGRFEESKMTMAEVLENQFMRDKPICIFANKQDLPTA 120 (263) T ss_dssp EEETTCGGGHHHHHHHHHHHHTSGGGTTCCEEEEEECTTSTTC T ss_pred EEECCChHhHHHHHHHHHHHHHHHhcCCCcEEEEEECccCCCh Confidence 999987655555444444443222 235889999999998764
##### No 310 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3DPU_B Rab family protein; RocCOR, G-domain, COR, GTP-binding, Nucleotide-binding; 2.9A {Chlorobaculum tepidum} Probab=99.47 E-value=2.3e-17 Score=128.92 Aligned_cols=160 Identities=21% Similarity=0.272 Sum_probs=0.0 Template_Neff=10.500 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DI--------EVDGKQVELALWDTAGLEDYDRLRPLS 76 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~-~~--------~~~~~~~~~~i~D~~g~~~~~~~~~~~ 76 (184) .+..||+++|.+|+|||||+++|....+.....++....... .. ........+.+||++|++.+...+..+ T Consensus 39 ~~~~ki~lvG~~~~GKTsL~~~L~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~f 118 (535) T 3DPU_B 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535) T ss_dssp -------------------------------------------------------------------------------- T ss_pred ceEEEEEEECCCCCCHHHHHHHHcCCCCCCcccCccceEEEeeecCCCCCCCCccccceEEEEEEecCCcccchhhcccc Confidence 467899999999999999999998776543222221111110 00 001245688999999999888888888 Q sequence1 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184) Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184) +...+++++|+|..+.... ..|...+....+..|+++|+||+|......... .......... . T Consensus 119 l~~~~~~ilv~d~~~~~~~----~~wl~~i~~~~~~~~vilV~tk~D~~~~~~~~~------------~~~~~~~~~~-~ 181 (535) T 3DPU_B 119 MTRSSVYMLLLDSRTDSNK----HYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQ------------KKINERFPAI-E 181 (535) T ss_dssp -------------------------------------------------------------------------------- T ss_pred ccCCEEEEEEEeCCCcchH----HHHHHHHHHHcCCCcEEEEEEcccCCCCcchhH------------HHHHHhCchh-h Confidence 8889999999998765322 334444433335689999999999876321100 0000000111 1 Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ..++.+|+.++.++.+++..+.+.+. T Consensus 182 ~~~~~~s~~~~~~i~~l~~~i~~~~~ 207 (535) T 3DPU_B 182 NRFHRISCKNGDGVESIAKSLKSAVL 207 (535) T ss_dssp -------------------------- T ss_pred ceeeEccCCCCCCHHHHHHHHHHHHh Confidence 35778899999999988887776553
##### No 311 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6VP8_A Leucine-rich repeat serine/threonine-protein kinase 2; Kinase, GTPase, SIGNALING PROTEIN; HET: TPO; 3.5A {Homo sapiens} Probab=99.47 E-value=2.3e-17 Score=139.49 Aligned_cols=122 Identities=25% Similarity=0.420 Sum_probs=72.8 Template_Neff=9.500 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV--YVPTVFENY-VADIEVD---GKQVELALWDTAGLEDYDRLRPLSYP 78 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~--~~~t~~~~~-~~~~~~~---~~~~~~~i~D~~g~~~~~~~~~~~~~ 78 (184) ..+..+|+++|.+++|||||++++....+... ..++....+ ....... .....+.+||+||+..+......++. T Consensus 2 ~~~~~kI~ivG~~~~GKSSLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~i~DtpG~~~~~~~~~~~l~ 81 (1198) T 6VP8_A 2 PYNRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMT 81 (1198) T ss_dssp BCCEEEEEEEECTTCCHHHHHHHHC--------------CCEEEEEEC---------CEEEEEECCSCCTHHHHCC---- T ss_pred CCccEEEEEECCCCCCHHHHHHHHhcCCCcccCcccCeeeEEEEEEEEEecCCCCceEEEEEEEcCCCHHHHhhcHHhcc Confidence 35678999999999999999999987665432 111211111 1111111 22367899999998888777778888 Q sequence1 79 DTDVILMCFSIDS-PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 127 (184) Q Consensus 79 ~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~ 127 (184) .+|++++|+|+++ ...+... ..+...+.......|+++|+||+|+... T Consensus 82 ~~d~illV~D~s~~~~~~~~~-~~~l~~i~~~~~~~piiiV~NK~Dl~~~ 130 (1198) T 6VP8_A 82 QRALYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDE 130 (1198) T ss_dssp -CEEEEEEEETTTCHHHHHHT-HHHHHHHHHHHTTSCEEEEEECGGGSCH T ss_pred cCCEEEEEEECCCchHHHHHH-HHHHHHHHHhcCCCCEEEEEECCCCCCH Confidence 9999999999988 3333333 2333333322246899999999999763
##### No 312 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3AH8_A Guanine nucleotide-binding protein G(i) subunit; Heterotrimeric G protein, GTPase, Galpha-q; HET: GDP; 2.9A {Chromobacterium sp.} Probab=99.47 E-value=2.3e-17 Score=122.93 Aligned_cols=129 Identities=18% Similarity=0.216 Sum_probs=79.4 Template_Neff=9.400 Q sequence1 55 QVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI----------DSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKD 123 (184) Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~-~~~~~~vv~nK~D 123 (184) ...+.+||++|++.+...+..++.+++++++|+|+ .+..++......+........ ...|+++++||+| T Consensus 194 ~~~i~i~D~~G~~~~~~~~~~~~~~~d~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piivv~nK~D 273 (355) T 3AH8_A 194 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 273 (355) T ss_dssp TEEEEEEECTTCCSCGGGTGGGGTTCSEEEEEEESGGGGCCCTTTTSCCHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH T ss_pred CeEEEEEECCCCcchHHHHHHHHcCCCEEEEEeeHHHcccccCCCCCCCcHHHHHHHHHHHHhCcccCCCCEEEEeeChH Confidence 35778999999888877787788889999999998 544445444444444433221 2689999999999 Q sequence1 124 LRNDEHTRREL----AKMKQEPVKPEEGRDM--------A-NRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 124 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) +.........+ ...............+ . .....+.++.+|++++.++.++|.++.+.+++ T Consensus 274 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~lf~~i~~~i~~ 346 (355) T 3AH8_A 274 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 346 (355) T ss_dssp HHHHHTTTSCSGGGSTTCCSCSSCHHHHHHHHHHHHHHTCCCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHccCCHHHhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCcceEEEEeCCChHHHHHHHHHHHHHHHH Confidence 98643100000 0000000000000000 0 00123568899999999999999998887654
##### No 313 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2G3Y_A GTP-binding protein GEM; GEM, small GTPase, GDP, inactive; HET: GDP; 2.4A {Homo sapiens} SCOP: c.37.1.8 Probab=99.47 E-value=2.4e-17 Score=113.88 Aligned_cols=165 Identities=24% Similarity=0.285 Sum_probs=97.1 Template_Neff=11.100 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY-VPT-VFENYVADIEVDGKQVELALWDTAGLEDYD-RLRPLSYPDTD 81 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~ 81 (184) ....++|+++|..++|||||++++......... ... ...........++....+.++|++|..... .....+...++ T Consensus 34 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d 113 (211) T 2G3Y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211) T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCCCCCCHHHHHHHCCCCCCS T ss_pred CCceEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCcccceEEEEEEECCeEEEEEEEECCCCCCchHHHHHHHhcCCC Confidence 456789999999999999999999864322111 111 111112222233334455666776543222 23444456689 Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160 (184) Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184) ++++|+++++...+......+....... ....|+++|+||+|+.......... ........ ...++ T Consensus 114 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~v~nk~D~~~~~~~~~~~------------~~~~~~~~-~~~~~ 180 (211) T 2G3Y_A 114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSE------------GRACAVVF-DCKFI 180 (211) T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHH------------HHHHHHHH-TCEEE T ss_pred EEEEEEECCChHhHHHHHHHHHHHHHhCCCCCCCEEEEEeCccccccccCCHHH------------HHHHHHHH-CCCEE Confidence 9999999987655444433222222111 2368999999999997532111000 00011111 25788 Q sequence1 161 ECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ++|+.++.|+.+++.++.+.+. T Consensus 181 ~~sa~~~~gi~~l~~~l~~~~~ 202 (211) T 2G3Y_A 181 ETSAAVQHNVKELFEGIVRQVR 202 (211) T ss_dssp ECBTTTTBSHHHHHHHHHHHHH T ss_pred EeeCCCCCCHHHHHHHHHHHHH Confidence 9999999999999999888765
##### No 314 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1WF3_A GTP-binding protein; GTP-binding protein, GTPase, RIKEN Structural; HET: GNP, GOL; 1.88A {Thermus thermophilus} SCOP: d.52.3.1, c.37.1.8 Probab=99.46 E-value=2.6e-17 Score=120.00 Aligned_cols=160 Identities=18% Similarity=0.121 Sum_probs=91.6 Template_Neff=10.000 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR--------LRPL 75 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~ 75 (184) ...+..+++++|.+++|||||++++.+...........................+.++|+||...... .... T Consensus 3 ~~~~~~~v~vvG~~~~GKStlin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~i~DtpG~~~~~~~~~~~~~~~~~~ 82 (301) T 1WF3_A 3 EKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301) T ss_dssp CCCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHH T ss_pred CCceeEEEEEECCCCCCHHHHHHHHhCCCcCCCCCCCCCccceEEEEEEeCCeEEEEEECCCCCCchhHhhHhhHHHHHH Confidence 45677899999999999999999998765432211111111111111122346789999999654321 2223 Q sequence1 76 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIG 155 (184) Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184) .+..+|++++|+|+....+... ..+...+.......|+++|+||+|+....... ... .. .... T Consensus 83 ~l~~~d~ii~vvd~~~~~~~~~--~~~~~~l~~~~~~~p~ilV~nK~Dl~~~~~~~--~~~----------~~---~~~~ 145 (301) T 1WF3_A 83 ALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPEEA--MKA----------YH---ELLP 145 (301) T ss_dssp HTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHHHH--HHH----------HH---HTST T ss_pred HHccCCEEEEEecCCCCCChHH--HHHHHHHHHhcCCCCEEEEEeCccccCCHHHH--HHH----------HH---HHCC Confidence 4567899999999876432221 11222222222357899999999987543110 000 00 0011 Q sequence1 156 AFGYMECSAKTKDGVREVFEMATRA 180 (184) Q Consensus 156 ~~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184) ...++.+|+.++.++.++...+... T Consensus 146 ~~~~~~~Sa~~~~~v~~l~~~l~~~ 170 (301) T 1WF3_A 146 EAEPRMLSALDERQVAELKADLLAL 170 (301) T ss_dssp TSEEEECCTTCHHHHHHHHHHHHTT T ss_pred CCCCeecccCCcccHHHHHHHHHHh Confidence 1346677888887777776655443
##### No 315 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4FID_A G protein alpha subunit; RAS-LIKE DOMAIN, ALL-HELICAL DOMAIN, GTP; HET: GDP; 2.62A {Entamoeba histolytica} Probab=99.46 E-value=2.9e-17 Score=121.76 Aligned_cols=128 Identities=14% Similarity=0.146 Sum_probs=78.8 Template_Neff=9.700 Q sequence1 56 VELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDL 124 (184) Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~~~~vv~nK~D~ 124 (184) +.+.+||++|++.+...|..++..++++++|+|++ +..++......+........ ...|+++++||.|+ T Consensus 161 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~dl~~~~~~~~~~~~~~s~~~~~~~~~~i~~~~~~~~~~iilv~nK~Dl 240 (340) T 4FID_A 161 IPFHLIDVGGQRSERKKWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDL 240 (340) T ss_dssp CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHH T ss_pred eeEEEEEcCCCcccHHHHHHhhcCCCEEEEEEEhhHhcchhhcCCCcccHHHHHHHHHHHHcCHHhcCCeEEEEccchHH Confidence 56789999999888888888889999999999998 44445444444444333221 25789999999999 Q sequence1 125 RNDEHTRRELAKMKQ---EPVKPEEGRD-----MAN---------------------RIGAFGYMECSAKTKDGVREVFE 175 (184) Q Consensus 125 ~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~---------------------~~~~~~~~~~s~~~~~~i~~~~~ 175 (184) ...........+... .......+.. +.. ....+.++++||+++.|+..+|. T Consensus 241 ~~~k~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~ 320 (340) T 4FID_A 241 FEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFM 320 (340) T ss_dssp HHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHH T ss_pred HHHHhccCCHHHhCCCCCCCCcHHHHHHHHHHHHHHHhhhhhhcccCCCCCCcCCCCCCceEEEEeeecCCHHHHHHHHH Confidence 764211100000000 0000000000 000 01224578999999999999999 Q sequence1 176 MATRAALQ 183 (184) Q Consensus 176 ~~~~~~~~ 183 (184) .+.+.+++ T Consensus 321 ~i~~~i~~ 328 (340) T 4FID_A 321 LAVDVIMK 328 (340) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH Confidence 88776653
##### No 316 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4N0D_A Guanine nucleotide-binding protein G(i) subunit; Rossmann fold, Guanine nucleotide binding; HET: GSP; 1.55A {Rattus norvegicus} Probab=99.46 E-value=2.9e-17 Score=122.48 Aligned_cols=129 Identities=17% Similarity=0.210 Sum_probs=77.8 Template_Neff=9.200 Q sequence1 55 QVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDS----------LENIPEKWTPEVKHF-CPNVPIILVGNKKD 123 (184) Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D 123 (184) ...+.+||++|++.+...+..++..++++++|+|+.+..+ +......+....... ....|+++|+||.| T Consensus 195 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~D 274 (356) T 4N0D_A 195 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 274 (356) T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH T ss_pred CeEEEEEEeCCCccchhHHHHHccCCCEEEEEEehhHcCcccccCcccchhHHHHHHHHHHHcCHhhcCCeEEEEecchh Confidence 3568899999988777777778889999999999998652 222222222222111 13579999999999 Q sequence1 124 LRNDEHTRRELAKMKQE---PVKPEEGRDMANRI----------GAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 124 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) +.........+...... .........+.... ..+.++++|+.++.|+.++|..+.+.+++ T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Sa~~~~~v~~lf~~l~~~i~~ 347 (356) T 4N0D_A 275 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIL 347 (356) T ss_dssp HHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH T ss_pred HhHHHHccCCceeccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHH Confidence 98743211000000000 00000011111000 13568899999999999999998887654
##### No 317 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1SVS_A Guanine nucleotide-binding protein G(i), alpha-1; Gi alpha subunit, K180P mutation; HET: GNP; 1.5A {Rattus norvegicus} SCOP: c.37.1.8 Probab=99.46 E-value=3.1e-17 Score=122.19 Aligned_cols=129 Identities=16% Similarity=0.215 Sum_probs=77.9 Template_Neff=9.200 Q sequence1 55 QVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD----------SLENIPEKWTPEVKHF-CPNVPIILVGNKKD 123 (184) Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D 123 (184) ...+.+||++|++.+...+..++..++++++|+|+.+.. .+......+...+... ....|+++|+||.| T Consensus 192 ~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI~V~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piIlV~nK~D 271 (353) T 1SVS_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353) T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH T ss_pred CeEEEEEEeCCCccchhHHHHHcCCCCEEEEEEehhHcCccccCCcccchhHHHHHHHHHHHcChhhCCCeEEEEeccch Confidence 356889999998887777777888999999999999865 2333222233222211 13689999999999 Q sequence1 124 LRNDEHTRRELAKMK---QEPVKPEEGRDMANR----------IGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 124 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----------~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) +.........+.... ...........+... ...+.++.+|+.++.++.++|.++.+.+++ T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~i~~ 344 (353) T 1SVS_A 272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 344 (353) T ss_dssp HHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH T ss_pred hhHHHHhcCCcccccCCcCCCCCHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHH Confidence 986421100000000 000000000000000 013568899999999999999998887754
##### No 318 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3DPU_A Rab family protein; RocCOR, G-domain, COR, GTP-binding, Nucleotide-binding; 2.9A {Chlorobaculum tepidum} Probab=99.46 E-value=3.3e-17 Score=128.04 Aligned_cols=159 Identities=21% Similarity=0.255 Sum_probs=95.0 Template_Neff=10.500 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIE--------VDGKQVELALWDTAGLEDYDRLRPLS 76 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~-~~~--------~~~~~~~~~i~D~~g~~~~~~~~~~~ 76 (184) ....||+++|.+|+|||||++++..........++....... ... .+.....+.+||++|++.+...+..+ T Consensus 39 ~~~~ki~lvG~~~~GKTsL~~~L~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~f 118 (535) T 3DPU_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535) T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH T ss_pred cceEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCccceeeeeeecCCCCcccCCCCCEEEEEEEeCCCCcchhhhhhhh Confidence 467899999999999999999998776543222222111110 000 11245678999999999888888888 Q sequence1 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184) Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184) +...+++++|+|+.+.... ..|...+....+..|+++|+||.|......... . ......... . T Consensus 119 ~~~~~~~ilv~d~~~~~~~----~~wl~~i~~~~~~~~vilV~tk~D~~~~~~~~~--~----------~~~~~~~~~-~ 181 (535) T 3DPU_A 119 MTRSSVYMLLLDSRTDSNK----HYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQ--K----------KINERFPAI-E 181 (535) T ss_dssp HHSSEEEEEEECGGGGGGH----HHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCH--H----------HHHHHCGGG-T T ss_pred cCCCcEEEEEEeCCChhhH----HHHHHHHHHHCCCCCEEEEEECcccCChhhcCH--H----------HHHHHHHHh-C Confidence 8889999999998765322 344444444345689999999999876321100 0 000000111 1 Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) ..++.+|+.++.++.+++..+.+.+ T Consensus 182 ~~~~~~s~~~~~~i~~l~~~i~~~~ 206 (535) T 3DPU_A 182 NRFHRISCKNGDGVESIAKSLKSAV 206 (535) T ss_dssp TCEEECCC-----CTTHHHHHHHHH T ss_pred CcEEEecCCCCCCHHHHHHHHHHHH Confidence 3577889999999998888776654
##### No 319 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4EKC_C Guanine nucleotide-binding protein G(q) subunit; GTP-binding protein fold, Regulator, G; HET: ALF, GDP; 7.4A {Mus musculus} Probab=99.45 E-value=3.5e-17 Score=121.65 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=78.9 Template_Neff=9.600 Q sequence1 56 VELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI----------DSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDL 124 (184) Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~ 124 (184) ..+.+||++|.+.+...+..++..++++++|+|+ .+...+......+....... ....|+++++||+|+ T Consensus 187 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~ 266 (347) T 4EKC_C 187 VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 266 (347) T ss_dssp CEEEEEEECCSGGGTTTGGGGCTTEEEEEEEEETTTTSCBCSSSSSCBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHH T ss_pred eeEEEEEeCCCcccchhHHHhccCCCEEEEEEEhhhhCccccCCCCcchHHHHHHHHHHHHcCHHHhCCeEEEEeechHH Confidence 5778999999888877888888899999999998 54445555444444433321 126899999999999 Q sequence1 125 RNDEHTRR--------------ELAKMKQEPVKPEEGRDMA-NRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 125 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) ........ ....... .. ........ .....+.++++|++++.|+.++|.++.+.+++ T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l-~~~~~~~~~~~~~~i~~~~~Sa~~~~~i~~lf~~i~~~~~~ 338 (347) T 4EKC_C 267 LEEKIMYSHLVDYFPEYDGPQRDAQAARE-FI-LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 338 (347) T ss_dssp HHHHTTTSCGGGTSTTCCSCSSCHHHHHH-HH-HHHHHTSCCCSSSCCEEEECCTTCHHHHHHHHHHHHHHHHH T ss_pred HHHHHhccchHHhCCCCCCCcCCHHHHHH-HH-HHHHHhcCCCCCCeEEEEEEeCCCHHHHHHHHHHHHHHHHH Confidence 86421000 0000000 00 00000000 00123568899999999999999998887653
##### No 320 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1ZCB_A G alpha i/13; GTP-binding, Lipoprotein, Membrane, Transducer, SIGNALING; HET: GDP; 2.0A {Mus musculus} SCOP: a.66.1.1, c.37.1.8 Probab=99.45 E-value=3.7e-17 Score=122.15 Aligned_cols=128 Identities=19% Similarity=0.139 Sum_probs=50.1 Template_Neff=9.700 Q sequence1 56 VELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD----------SLENIPEKWTPEVKHFC-PNVPIILVGNKKDL 124 (184) Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~~~~vv~nK~D~ 124 (184) ..+.+||++|++.+...|..++..++++++|+|+++.. .+......+........ ...|+++|+||.|+ T Consensus 201 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iilv~nK~D~ 280 (362) T 1ZCB_A 201 VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280 (362) T ss_dssp EEEEEEEECCCTSCTT--------------CC------EEEETEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHH T ss_pred EEEEEEeCCCCcchHHHHHHHhcCCCEEEEEEehhhcchhccCCCCCCCHHHHHHHHHHHHhCcchhcCCEEEEeechhH Confidence 56779999999888778888889999999999999853 23333233333322211 26889999999998 Q sequence1 125 RNDEHTRRELAKMKQEP----VKPEEGRDMAN----------RIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 125 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----------~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) ................. ........+.. ....+.++++|+.++.|+.++|.++.+.+++ T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~Sa~~~~~i~~lf~~i~~~i~~ 353 (362) T 1ZCB_A 281 LEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362) T ss_dssp HHHHT-TTCCGGTCT----------TCCHHHHHHH---------HTTEEEECCTTCHHH----------HHHH T ss_pred HHHHHhcCCHHHhCCCCCCCCCCHHHHHHHHHHHHHHHccCccCCceEEEEeeCCChHHHHHHHHHHHHHHHH Confidence 75321110000000000 00001111110 1122457889999999999999988877653
##### No 321 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5M7H_A GTPase Der; GTPase, EngA, HYDROLASE; HET: PO4, GNP; 3.15A {Bacillus subtilis (strain 168)} Probab=99.45 E-value=3.9e-17 Score=124.42 Aligned_cols=164 Identities=16% Similarity=0.155 Sum_probs=97.4 Template_Neff=11.000 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV--PTVFENYVADIEVDGKQVELALWDTAGLED----------YD-R 71 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~-~ 71 (184) .....+++++|.+|+|||||++++.......... +++...... ........+.+||++|... +. . T Consensus 172 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~ 249 (436) T 5M7H_A 172 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDT--SFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVL 249 (436) T ss_dssp CTTCEEEEEECSSSSSHHHHHHHHHHSTTEECCC---CCTTCSSE--EEEETTEEEEESCSHHHHHBTTBCCSCHHHHHH T ss_pred ccceEEEEEECCCCCChHHHHHHHhCCCeeEeeCCCCCccccEEE--EEEECCEEEEEEcCCCccCCCccccchHHHHHH Confidence 3456899999999999999999998765432211 111111111 1222345789999999532 11 1 Q sequence1 72 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA 151 (184) Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (184) ........+|++++|+|.++. +......+....... ..|+++|+||+|+....... .... ........ T Consensus 250 ~~~~~~~~~d~ii~v~d~~~~--~~~~~~~~~~~~~~~--~~piilv~nK~D~~~~~~~~--~~~~------~~~~~~~~ 317 (436) T 5M7H_A 250 RALKAIDRSEVVAVVLDGEEG--IIEQDKRIAGYAHEA--GKAVVIVVNKWDAVDKDEST--MKEF------EENIRDHF 317 (436) T ss_dssp HHHHHHHHCSEEEEEEETTTB--CCHHHHHHHHHHHHH--TCEECEEEECTTTSCCCSSC--HHHH------HHHHHHHC T ss_pred HHHHHHhhCCEEEEEeeCCCC--CcHHHHHHHHHHHHc--CCeEEEEEecchhcCCChHh--HHHH------HHHHHHHC Confidence 122345678999999988753 222223333333322 58999999999998743210 0000 00001111 Q sequence1 152 NRIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 152 ~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) .......++++||.++.|+.+++.++.+.+. T Consensus 318 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 348 (436) T 5M7H_A 318 QFLDYAPILFMSALTKKRIHTLMPAIIKASE 348 (436) T ss_dssp CSCSSSCEEECCTTTCCSGGGHHHHHHHHHH T ss_pred cccCCCCEEEecCCCCcchHhHHHHHHHHHH Confidence 1222367889999999999999988776553
##### No 322 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4EKD_A Guanine nucleotide-binding protein G(q) subunit; GTP-binding, Regulator of G protein; HET: GDP, MES; 2.71A {Mus musculus} Probab=99.45 E-value=4.4e-17 Score=121.13 Aligned_cols=128 Identities=18% Similarity=0.217 Sum_probs=79.0 Template_Neff=9.600 Q sequence1 56 VELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI----------DSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDL 124 (184) Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~-~~~~~~vv~nK~D~ 124 (184) ..+.+||++|+..+...+..++..++++++|+|+ .+...+......+..+..... ...|+++++||.|+ T Consensus 187 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~nK~D~ 266 (347) T 4EKD_A 187 VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 266 (347) T ss_dssp CEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEEGGGGGCBCTTSSSCBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHH T ss_pred EEEEEEECCCCcchHHHHHHHhcCCCEEEEEEehHHhcccCCCCCCCChHHHHHHHHHHHHhChhhcCCCEEEEEechHH Confidence 5788999999888877888888899999999998 544445444444444333221 26899999999998 Q sequence1 125 RNDEHTRREL----AKMKQEPVKPEEGRDM--------A-NRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 125 ~~~~~~~~~~----~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) .........+ ...............+ . .....+.++++|+.++.|+.++|.++.+.+++ T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~i~~~~~~ 338 (347) T 4EKD_A 267 LEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 338 (347) T ss_dssp HHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHTTCCCSSCCCEEEECCTTCHHHHHHHHHHHHHHHHH T ss_pred HHHHHhcCCHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCeeeEEEeeCCChHHHHHHHHHHHHHHHH Confidence 7642100000 0000000000000000 0 00123678899999999999999999887754
##### No 323 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3L82_B Telomeric repeat-binding factor 1, F-box; TRFH domain, helix, GTPase domain; 2.4A {Homo sapiens} Probab=99.44 E-value=4.7e-17 Score=114.16 Aligned_cols=168 Identities=8% Similarity=-0.010 Sum_probs=91.1 Template_Neff=9.500 Q sequence1 5 SPIRKKLVIVGDGACGKT-CLLIVNSKDQFP-E-VYVPTV-FENYVA--DIEVDG-----------------K----QVE 57 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKt-sli~~~~~~~~~-~-~~~~t~-~~~~~~--~~~~~~-----------------~----~~~ 57 (184) ..+.+||+++|+...||| ||+.++...... . ...+++ ...... .....+ . .-. T Consensus 13 ~~~~~ki~~~G~gl~~~tt~l~~~l~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~~~~~ 92 (227) T 3L82_B 13 IQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEHT 92 (227) T ss_dssp CCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC------------- T ss_pred cCCCCeEEeeCCChhhcChhHHHHHhcCCCcccccCCCCCccCcccCcEEEEeCCCcEEEEEEEEecCHHHHHHHHHHhh Confidence 457899999999999986 888888754221 0 011110 000000 000000 0 012 Q sequence1 58 LALWD-----------TAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSL--ENIPEKWTPEVKH--FCPNVPIILVGNK- 121 (184) Q Consensus 58 ~~i~D-----------~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~--~~~~~~~~vv~nK- 121 (184) ..+|| .+|++.++..|..++..+|++++|+|.++...+ ....+.+...+.. .....|+++++|| T Consensus 93 ~~~~~l~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~iIfVvD~s~~~~~~~~~~~~~L~~~l~~~~~~~~~pilvl~NKk 172 (227) T 3L82_B 93 SAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCIS 172 (227) T ss_dssp ------------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEES T ss_pred hHHhHhhhcccCCCCCcCCccchHHHHHHHhccCCEEEEEEecccccccChHHHHHHHHHHhccccCcCCCCEEEEEeCC Confidence 34455 378888888999999999999999999987666 4444444444432 2246899999996 Q sequence1 122 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184) Q Consensus 122 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184) .|+...... ..+.+ ..........+.++++||.++.|+.+.|.|+.+.+.+ T Consensus 173 ~d~~~~~~~-~~i~~----------~l~l~~~~~~~~v~~~Sa~~g~gv~e~~~~L~~~i~~ 223 (227) T 3L82_B 173 QGDVKRMPC-FYLAH----------ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227) T ss_dssp STTSCBCCH-HHHHH----------HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT T ss_pred CCCcCCCCH-HHHHH----------HcCHhHcCCCcEEEECCCCCCccHHHHHHHHHHHHHH Confidence 665332111 11100 0000000112468899999999999999999887653
##### No 324 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6S6A_A Ras-related GTP-binding protein A, Ras-related; small GTPases, mTORC1 activator, roadblock; HET: GTP, GDP, 9JE; 2.63A {Homo sapiens} Probab=99.44 E-value=5e-17 Score=118.84 Aligned_cols=169 Identities=14% Similarity=0.286 Sum_probs=97.9 Template_Neff=10.900 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV--PTVFENYVADIEVDGKQVELALWDTAGLEDY-----DRLRPL 75 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~ 75 (184) +......+|+++|..|+||||+++++.......... .++........... ....+.+||+||...+ ...+.. T Consensus 2 ~~~~~~~~I~vvG~~~sGKStli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~D~pG~~~~~~~~~~~~~~~ 80 (313) T 6S6A_A 2 PNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-GNLVLNLWDCGGLDTFMENYFTSQRDN 80 (313) T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSEEEEEEEEB-TTEEEEEEEECCSHHHHHHHHTTTHHH T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHhcCCCccccCCCcccceeEEEeeeec-CceEEEEEECCCcHHHHHhhhHhhHHH Confidence 345678999999999999999999998765432211 11111111111111 2346899999998765 555666 Q sequence1 76 SYPDTDVILMCFSIDSPDSLENIPEKWTPEV---KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN 152 (184) Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~---~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184) ++..+|++++|++++++...... ..+...+ .......|+++|+||+|+............ . ......+.. T Consensus 81 ~~~~~d~ii~v~d~~~~~~~~~~-~~l~~~l~~~~~~~~~~~vilv~nk~D~~~~~~~~~~~~~-~-----~~~~~~~~~ 153 (313) T 6S6A_A 81 IFRNVEVLIYVFDVESRELEKDM-HYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKE-R-----EEDLRRLSR 153 (313) T ss_dssp HHTTCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCTTTHHHHHHH-H-----HHHHHHTTT T ss_pred hhccCCEEEEEEecCChhHHHHH-HHHHHHHHHHHHhCCCCcEEEEEEcccCCCHHHHHHHHHH-H-----HHHHHHHhc Confidence 77899999999999875543332 2222222 111236889999999999764211110000 0 011111111 Q sequence1 153 RIGAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 153 ~~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) .. ...++.+|+.+ .++...+.++...+ T Consensus 154 ~~-~~~~~~~S~~~-~~~~~~~~~~~~~~ 180 (313) T 6S6A_A 154 PL-ECACFRTSIWD-ETLYKAWSSIVYQL 180 (313) T ss_dssp TS-CEEEEEECTTS-THHHHHHHHHHHTT T ss_pred CC-ceEEEEcccCC-ccHHHHHHHHHHHH Confidence 11 24677788877 57777776655543
##### No 325 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6S6D_A Ras-related GTP-binding protein A, Ras-related; small GTPases, mTORC1 activator, roadblock; HET: GTP, GDP, 9JE; 2.5A {Homo sapiens} Probab=99.44 E-value=5e-17 Score=118.84 Aligned_cols=169 Identities=14% Similarity=0.286 Sum_probs=97.9 Template_Neff=10.900 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV--PTVFENYVADIEVDGKQVELALWDTAGLEDY-----DRLRPL 75 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~ 75 (184) +......+|+++|..|+||||+++++.......... .++........... ....+.+||+||...+ ...+.. T Consensus 2 ~~~~~~~~I~vvG~~~sGKStli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~D~pG~~~~~~~~~~~~~~~ 80 (313) T 6S6D_A 2 PNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-GNLVLNLWDCGGLDTFMENYFTSQRDN 80 (313) T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHSCCCGGGGGGCCCCCSEEEEEEEEB-TTEEEEEEEECCCHHHHHHHTTTTHHH T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHhcCCCccccCCCcccceeEEEeeeec-CceEEEEEECCCcHHHHHhhhHhhHHH Confidence 345678999999999999999999998765432211 11111111111111 2346899999998765 555666 Q sequence1 76 SYPDTDVILMCFSIDSPDSLENIPEKWTPEV---KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN 152 (184) Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~---~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184) ++..+|++++|++++++...... ..+...+ .......|+++|+||+|+............ . ......+.. T Consensus 81 ~~~~~d~ii~v~d~~~~~~~~~~-~~l~~~l~~~~~~~~~~~vilv~nk~D~~~~~~~~~~~~~-~-----~~~~~~~~~ 153 (313) T 6S6D_A 81 IFRNVEVLIYVFDVESRELEKDM-HYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKE-R-----EEDLRRLSR 153 (313) T ss_dssp HHTTEEEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHH-H-----HHHHHHHTT T ss_pred hhccCCEEEEEEecCChhHHHHH-HHHHHHHHHHHHhCCCCcEEEEEEcccCCCHHHHHHHHHH-H-----HHHHHHHhc Confidence 77899999999999875543332 2222222 111236889999999999764211110000 0 011111111 Q sequence1 153 RIGAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 153 ~~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) .. ...++.+|+.+ .++...+.++...+ T Consensus 154 ~~-~~~~~~~S~~~-~~~~~~~~~~~~~~ 180 (313) T 6S6D_A 154 PL-ECACFRTSIWD-ETLYKAWSSIVYQL 180 (313) T ss_dssp TS-CCEEEECCTTS-THHHHHHHHHHHTT T ss_pred CC-ceEEEEcccCC-ccHHHHHHHHHHHH Confidence 11 24677788877 57777776655543
##### No 326 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6S6D_B Ras-related GTP-binding protein A, Ras-related; small GTPases, mTORC1 activator, roadblock; HET: 9JE, GTP, GDP; 2.5A {Homo sapiens} Probab=99.44 E-value=5e-17 Score=118.84 Aligned_cols=169 Identities=14% Similarity=0.286 Sum_probs=97.9 Template_Neff=10.900 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV--PTVFENYVADIEVDGKQVELALWDTAGLEDY-----DRLRPL 75 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~ 75 (184) +......+|+++|..|+||||+++++.......... .++........... ....+.+||+||...+ ...+.. T Consensus 2 ~~~~~~~~I~vvG~~~sGKStli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~D~pG~~~~~~~~~~~~~~~ 80 (313) T 6S6D_B 2 PNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-GNLVLNLWDCGGLDTFMENYFTSQRDN 80 (313) T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHSCCCSGGGSSCCCCCSEECCEEEET-TTEEEEEEEECCSHHHHHHHHTTTHHH T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHhcCCCccccCCCcccceeEEEeeeec-CceEEEEEECCCcHHHHHhhhHhhHHH Confidence 345678999999999999999999998765432211 11111111111111 2346899999998765 555666 Q sequence1 76 SYPDTDVILMCFSIDSPDSLENIPEKWTPEV---KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN 152 (184) Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~---~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184) ++..+|++++|++++++...... ..+...+ .......|+++|+||+|+............ . ......+.. T Consensus 81 ~~~~~d~ii~v~d~~~~~~~~~~-~~l~~~l~~~~~~~~~~~vilv~nk~D~~~~~~~~~~~~~-~-----~~~~~~~~~ 153 (313) T 6S6D_B 81 IFRNVEVLIYVFDVESRELEKDM-HYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKE-R-----EEDLRRLSR 153 (313) T ss_dssp HHSSEEEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCGGGHHHHHHH-H-----HHHHHHHTT T ss_pred hhccCCEEEEEEecCChhHHHHH-HHHHHHHHHHHHhCCCCcEEEEEEcccCCCHHHHHHHHHH-H-----HHHHHHHhc Confidence 77899999999999875543332 2222222 111236889999999999764211110000 0 011111111 Q sequence1 153 RIGAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 153 ~~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) .. ...++.+|+.+ .++...+.++...+ T Consensus 154 ~~-~~~~~~~S~~~-~~~~~~~~~~~~~~ 180 (313) T 6S6D_B 154 PL-ECACFRTSIWD-ETLYKAWSSIVYQL 180 (313) T ss_dssp TS-CCEEEEECTTS-THHHHHHHHHHHTT T ss_pred CC-ceEEEEcccCC-ccHHHHHHHHHHHH Confidence 11 24677788877 57777776655543
##### No 327 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2XTZ_C GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT; HYDROLASE, G-PROTEIN SIGNALING, SELF-ACTIVATION, RAS-LIKE; HET: SO4, CSS, GSP; 2.34A {ARABIDOPSIS THALIANA} Probab=99.44 E-value=5.3e-17 Score=121.02 Aligned_cols=128 Identities=15% Similarity=0.230 Sum_probs=75.6 Template_Neff=9.200 Q sequence1 55 QVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKD 123 (184) Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~~~~vv~nK~D 123 (184) .+.+.+||++|+..+...+..++..++++++|+|++ +..++......+..+..... ...|+++++||.| T Consensus 182 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~dls~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~nK~D 261 (354) T 2XTZ_C 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 261 (354) T ss_dssp ---EEEEECCCSGGGGGGSGGGCTTCSEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHH T ss_pred CcEEEEEEcCCCcchHHHHHHhcCCCCEEEEEEEhHHhccccccCcccChHHHHHHHHHHHHcChhhcCCeEEEEeccHH Confidence 456889999998888777888888999999999998 44445444444443332221 2679999999999 Q sequence1 124 LRNDEHTRREL------AKMKQ---EPVKPEEGRDMANR-I--------------GAFGYMECSAKTKDGVREVFEMATR 179 (184) Q Consensus 124 ~~~~~~~~~~~------~~~~~---~~~~~~~~~~~~~~-~--------------~~~~~~~~s~~~~~~i~~~~~~~~~ 179 (184) +.......... ..... ..........+... + ..+.++++||.++.|+.++|.++.+ T Consensus 262 l~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~i~~ 341 (354) T 2XTZ_C 262 IFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDE 341 (354) T ss_dssp HHHHHHTTSCGGGSGGGTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHTCCGGGTTSCEEEEECCTTCHHHHHHHHHHHHH T ss_pred HHHHHHhcCCcchhhhccccCCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCcCceEEEEEEecCCHHHHHHHHHHHHH Confidence 97642111000 00000 00000001111000 0 1123448999999999999999888 Q sequence1 180 AAL 182 (184) Q Consensus 180 ~~~ 182 (184) .+. T Consensus 342 ~i~ 344 (354) T 2XTZ_C 342 TLR 344 (354) T ss_dssp HHH T ss_pred HHH Confidence 664
##### No 328 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4ARZ_A GTP-BINDING PROTEIN GTR1, GTP-BINDING PROTEIN; HYDROLASE, GTPASE, CELL GROWTH; HET: GTP, GDP; 3.1A {SACCHAROMYCES CEREVISIAE} Probab=99.43 E-value=6.1e-17 Score=118.39 Aligned_cols=170 Identities=16% Similarity=0.259 Sum_probs=95.6 Template_Neff=10.600 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGLEDYDR-----LRPL 75 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~ 75 (184) |.....++|+++|..|+|||++++.+......... ...+.......... .....+.+||+||+..+.. .+.. T Consensus 1 ~~~~~~~ki~l~G~~~sGKSsl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~D~pG~~~~~~~~~~~~~~~ 79 (310) T 4ARZ_A 1 MSSNNRKKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF-LGNMTLNLWDCGGQDVFMENYFTKQKDH 79 (310) T ss_dssp ---CCEEEEEEEECTTSSHHHHHHHHHSCCCSGGGGGGCCCCSEEEEEEEE-TTTEEEEEEEECCCHHHHHHHHTTTHHH T ss_pred CCcCCCeEEEEECCCCCCHHHHHHHHhcCCChhhhccccceeeeEEEEeEe-cCCeEEEEEECCCchHHHHhhhHhcHhh Confidence 45677899999999999999999999875332111 11111111111111 1245789999999876543 4566 Q sequence1 76 SYPDTDVILMCFSIDSPDSLENIPEKWTPE---VKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN 152 (184) Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~---~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184) .+..+|++++|+|+++....... ..+... +....+..|+++++||+|+............... ....... T Consensus 80 ~~~~~d~li~V~d~~~~~~~~~~-~~~~~~l~~l~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~------~l~~~~~ 152 (310) T 4ARZ_A 80 IFQMVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMK------NLSETSS 152 (310) T ss_dssp HTSSCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECTTSSCHHHHHHHHHHHHH------HHHHHHH T ss_pred hccccCEEEEEEeCCChhHHHHH-HHHHHHHHHHHHHCCCCcEEEEEEcccccCHhhHHHHHHHHHH------HHHhhcc Confidence 67889999999999876544333 222222 2222246899999999999864321111111000 0001111 Q sequence1 153 --RIGAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 153 --~~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) ......++.+|+.++ ++.+.+..++..+ T Consensus 153 ~~~~~~~~~~~~S~~~~-~~~~~~~~~~~~~ 182 (310) T 4ARZ_A 153 EFGFPNLIGFPTSIWDE-SLYKAWSQIVCSL 182 (310) T ss_dssp HTSCCSCEEEEECTTST-HHHHHHHHHHTTS T ss_pred ccCCCceEEEecccCch-HHHHHHHHHHHHH Confidence 111246788888776 5555555555443
##### No 329 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6XRS_C GTPase Der; GTPase, KH domain, National Institute; HET: GDP; 2.8A {Neisseria gonorrhoeae (strain NCCP11945)} Probab=99.43 E-value=6.2e-17 Score=124.05 Aligned_cols=162 Identities=13% Similarity=0.130 Sum_probs=91.1 Template_Neff=11.000 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY----------DR-LRP 74 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~-~~~ 74 (184) ....+|+++|.+++|||||++++.............................+.+||+||.... .. ... T Consensus 189 ~~~~~i~iiG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~~~ 268 (458) T 6XRS_C 189 AKHPVFAVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAM 268 (458) T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHHHHTTC---------CEEEEEETTEEEEEECC---------------CCHHHHH T ss_pred cCCCEEEEEcCCCCCHHHHHHHHcCCCccEeeCCCCCccceEEEEEEECCeEEEEEECCCCcCCCCcchhHHHHHHHHHH Confidence 5567999999999999999999987653221111111111111122233457899999994321 11 133 Q sequence1 75 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI 154 (184) Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184) .+...+|++++|+|.++.. ......+...... ...|+++|+||+|+....... .... .....+ ... T Consensus 269 ~~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~-~~~~--------~~~~~~-~~~ 334 (458) T 6XRS_C 269 QAVEAANVAVLVLDAQQDI--ADQDATIAGFALE--AGRALVVAVNKWDGISEERRE-QVKR--------DISRKL-YFL 334 (458) T ss_dssp HHHHHCSEEEEEEETTSCC--CHHHHHHHHHHHH--TTCEEEEEEECGGGCCHHHHH-HHHH--------HHHHHC-GGG T ss_pred HHHHhCCEEEEEeeCCCCc--hHHHHHHHHHHHH--hCCcEEEEEecccCCCHHHHH-HHHH--------HHHHHh-hcC Confidence 3457899999999998632 2211122222221 258999999999997643211 1100 000001 111 Q sequence1 155 GAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 155 ~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) ....++.+|+.++.++.+++.++...+ T Consensus 335 ~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 361 (458) T 6XRS_C 335 DFAKFHFISALKERGIDGLFESIQAAY 361 (458) T ss_dssp TTSCEEECBTTTTBSHHHHHHHHHHHH T ss_pred CcCcEEEcccCCccChhHHHHHHHHHH Confidence 236788999999999999988776654
##### No 330 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6XRS_D GTPase Der; GTPase, KH domain, National Institute; HET: GDP; 2.8A {Neisseria gonorrhoeae (strain NCCP11945)} Probab=99.43 E-value=6.2e-17 Score=124.05 Aligned_cols=162 Identities=13% Similarity=0.130 Sum_probs=91.3 Template_Neff=11.000 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY----------DR-LRP 74 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~-~~~ 74 (184) ....+|+++|.+++|||||++++.............................+.+||+||.... .. ... T Consensus 189 ~~~~~i~iiG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~~~ 268 (458) T 6XRS_D 189 AKHPVFAVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAM 268 (458) T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHTSTTEEECC--------CEEEEEETTEEEEEECC---------------CCHHHHH T ss_pred cCCCEEEEEcCCCCCHHHHHHHHcCCCccEeeCCCCCccceEEEEEEECCeEEEEEECCCCcCCCCcchhHHHHHHHHHH Confidence 5567999999999999999999987653221111111111111122233457899999994321 11 133 Q sequence1 75 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI 154 (184) Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184) .+...+|++++|+|.++.. ......+...... ...|+++|+||+|+....... .... .....+ ... T Consensus 269 ~~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~-~~~~--------~~~~~~-~~~ 334 (458) T 6XRS_D 269 QAVEAANVAVLVLDAQQDI--ADQDATIAGFALE--AGRALVVAVNKWDGISEERRE-QVKR--------DISRKL-YFL 334 (458) T ss_dssp HHHHHCSEEEEEEETTSCC--CHHHHHHHHHHHH--TTCEEEEEEECGGGCCHHHHH-HHHH--------HHHHHT-GGG T ss_pred HHHHhCCEEEEEeeCCCCc--hHHHHHHHHHHHH--hCCcEEEEEecccCCCHHHHH-HHHH--------HHHHHh-hcC Confidence 3457899999999998632 2211122222221 258999999999997643211 1100 000001 111 Q sequence1 155 GAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 155 ~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) ....++.+|+.++.++.+++.++...+ T Consensus 335 ~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 361 (458) T 6XRS_D 335 DFAKFHFISALKERGIDGLFESIQAAY 361 (458) T ss_dssp TTSCEEECBTTTTBSHHHHHHHHHHHH T ss_pred CcCcEEEcccCCccChhHHHHHHHHHH Confidence 236788999999999999988776654
##### No 331 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1NRJ_B Signal recognition particle receptor alpha; Signal recognition particle, Transmembrane, Receptor; HET: GTP; 1.7A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Probab=99.43 E-value=6.7e-17 Score=112.38 Aligned_cols=119 Identities=16% Similarity=0.180 Sum_probs=77.6 Template_Neff=10.800 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPD---- 79 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~---- 79 (184) ......+|+++|.+++|||+|++++............ ........ ....+.+||+||+..+...+..++.. T Consensus 8 ~~~~~~~i~l~G~~~~GKssl~~~l~~~~~~~~~~~~---~~~~~~~~--~~~~~~l~D~pg~~~~~~~~~~~~~~~~~~ 82 (218) T 1NRJ_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ---EPLSAADY--DGSGVTLVDFPGHVKLRYKLSDYLKTRAKF 82 (218) T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCS---SCEEETTG--GGSSCEEEECCCCGGGTHHHHHHHHHHGGG T ss_pred ccCCCCeEEEECCCCCCHHHHHHHHccCCCCCcccCC---CCceEEee--CCCeEEEEeCCCCHHHHHHHHHHHHhhhcc Confidence 3456789999999999999999999876543211110 00111111 23467999999998776666655555 Q sequence1 80 TDVILMCFSID-SPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRND 127 (184) Q Consensus 80 ~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~ 127 (184) ++++++|+|+. ....+......+...+... ....|+++++||+|+... T Consensus 83 ~~~vi~vvd~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~p~~iv~nK~D~~~~ 135 (218) T 1NRJ_B 83 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 135 (218) T ss_dssp EEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC T ss_pred ccEEEEEeeCCCCHHHHHHHHHHHHHHHHHhhhhcccCCeEEEEEechhcCCC Confidence 89999999998 3434444433343333221 236899999999999763
##### No 332 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2XTZ_A GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT; HYDROLASE, G-PROTEIN SIGNALING, SELF-ACTIVATION, RAS-LIKE; HET: SO4, GSP; 2.34A {ARABIDOPSIS THALIANA} Probab=99.43 E-value=7.4e-17 Score=120.25 Aligned_cols=129 Identities=14% Similarity=0.188 Sum_probs=76.3 Template_Neff=9.200 Q sequence1 55 QVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKD 123 (184) Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D 123 (184) .+.+.+||++|+..+...|..++..++++++|+|+. +...+......+..+.... ....|+++++||.| T Consensus 182 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~dls~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~piilv~nK~D 261 (354) T 2XTZ_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 261 (354) T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHH T ss_pred CcEEEEEEcCCCcchHHHHHHhcCCCCEEEEEEEhHHhccccccCcccChHHHHHHHHHHHHcChhhcCCeEEEEeccHH Confidence 456889999999888888888888999999999998 4444444433333333221 12579999999999 Q sequence1 124 LRNDEHTRREL------AKMKQ---EPVKPEEGRDMANR---------------IGAFGYMECSAKTKDGVREVFEMATR 179 (184) Q Consensus 124 ~~~~~~~~~~~------~~~~~---~~~~~~~~~~~~~~---------------~~~~~~~~~s~~~~~~i~~~~~~~~~ 179 (184) +.......... ..... ..........+... ...+.++++||+++.|+.++|.++.+ T Consensus 262 l~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~v~~ 341 (354) T 2XTZ_A 262 IFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDE 341 (354) T ss_dssp HHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHH T ss_pred HHHHHHhcCCcchhhhccccCCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCcCceEEEEEEecCCHHHHHHHHHHHHH Confidence 97642111000 00000 00000011111000 01123448999999999999999888 Q sequence1 180 AALQ 183 (184) Q Consensus 180 ~~~~ 183 (184) .+.+ T Consensus 342 ~i~~ 345 (354) T 2XTZ_A 342 TLRR 345 (354) T ss_dssp HHHH T ss_pred HHHH Confidence 6643
##### No 333 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4FID_B G protein alpha subunit; RAS-LIKE DOMAIN, ALL-HELICAL DOMAIN, GTP; HET: MSE, GDP, MLY; 2.62A {Entamoeba histolytica} Probab=99.42 E-value=8.4e-17 Score=119.33 Aligned_cols=128 Identities=15% Similarity=0.152 Sum_probs=69.8 Template_Neff=9.700 Q sequence1 56 VELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDL 124 (184) Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~~~~vv~nK~D~ 124 (184) +.+.+||++|+..+...|..++..++++++|+|++ +..++......+........ ...|+++++||.|+ T Consensus 161 ~~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~nK~Dl 240 (340) T 4FID_B 161 IPFHLIDVGGQRSERKKWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDL 240 (340) T ss_dssp EEEEEEEEC---------CCCTTSCSEEEEEEEGGGTTCC------CCHHHHHHHHHHTTTTCGGGTTSEEEEEEECHHH T ss_pred eeEEEEEcCCCcccHHHHHHhhcCCCEEEEEEEhhHhcchhhcCCCcccHHHHHHHHHHHHcCHHHcCCeEEEEccchHH Confidence 46789999999888888888889999999999999 44444444443433332211 25789999999999 Q sequence1 125 RNDEHTRRELAKMKQEP---VKPEEGRD-----MA---------------------NRIGAFGYMECSAKTKDGVREVFE 175 (184) Q Consensus 125 ~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~---------------------~~~~~~~~~~~s~~~~~~i~~~~~ 175 (184) ................. .....+.. +. .....+.++++||+++.|+..+|. T Consensus 241 ~~~k~~~~~l~~~f~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~f~ 320 (340) T 4FID_B 241 FEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFM 320 (340) T ss_dssp HHHHHHHSCGGGTSTTCCCCSCHHHHHHHHHHHHHSSSCEEEC------------CCSSSSEEEEECCTTCHHHHHHHHH T ss_pred HHHHhccCCHHHhCCCCCCCCcHHHHHHHHHHHHHHHhhhhhhcccCCCCCCcCCCCCCceEEEEeeecCCHHHHHHHHH Confidence 76421110000000000 00000000 00 001224577999999999999998 Q sequence1 176 MATRAALQ 183 (184) Q Consensus 176 ~~~~~~~~ 183 (184) .+.+.+++ T Consensus 321 ~~~~~i~~ 328 (340) T 4FID_B 321 LAVDVIMK 328 (340) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH Confidence 88776653
##### No 334 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2DBY_A GTP-binding protein; GTP-binding protein, GDP, Structural Genomics; HET: GDP; 1.76A {Thermus thermophilus} Probab=99.42 E-value=8.6e-17 Score=120.48 Aligned_cols=85 Identities=15% Similarity=0.146 Sum_probs=54.1 Template_Neff=9.600 Q sequence1 9 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT-VFENYVADIEVDGKQV-------------------ELALWDTAGLED 68 (184) Q Consensus 9 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~-------------------~~~i~D~~g~~~ 68 (184) ++|+++|.+++|||||++++..........+. +.......+...+..+ .+.+||+||... T Consensus 2 ~~i~ivG~~~~GKSTl~n~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~i~D~pG~~~ 81 (368) T 2DBY_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368) T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC T ss_pred cEEEEECCCCCCHHHHHHHHhccCccccCCCCCcccceEEEEEeCCHHHHHHHHHcCCCCCCCCccCCeEEEEEcCCcCC Confidence 68999999999999999999876542222111 1111111122222112 789999999754 Q sequence1 69 YDR-------LRPLSYPDTDVILMCFSIDSPD 93 (184) Q Consensus 69 ~~~-------~~~~~~~~~~~~i~v~d~~~~~ 93 (184) ... .+..++..+|++++|+|+.+.. T Consensus 82 ~~~~~~~~~~~~l~~~~~ad~ii~Vvd~~~~~ 113 (368) T 2DBY_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDP 113 (368) T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH T ss_pred CccCCcchHHHHHHHHHhhCeEEEeeccCCCC Confidence 322 2335567899999999988753
##### No 335 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1MKY_A Probable GTP-binding protein engA; GTPase, EngA, Der, KH-Domain, tandem; HET: GDP, PO4; 1.9A {Thermotoga maritima} SCOP: c.37.1.8, d.52.5.1 Probab=99.41 E-value=1e-16 Score=122.02 Aligned_cols=164 Identities=18% Similarity=0.129 Sum_probs=94.3 Template_Neff=11.400 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVP-TVFENYVADIEVDGKQVELALWDTAGLEDYDR----------- 71 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------- 71 (184) ....++++++|.+++|||||++++........ ..+ +........... ....+.+||++|...... T Consensus 177 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 254 (439) T 1MKY_A 177 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI--DGRKYVFVDTAGLRRKSRVEPRTVEKYSN 254 (439) T ss_dssp CCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEE--TTEEEEESSCSCC-----------CCSCC T ss_pred hcCCCEEEEEcCCCCcHHHHHHHHhCCcccccCCCCCcccccEEEEEEE--CCEEEEEEECCCCcccccCChhHHHHHhH Confidence 35678999999999999999999886543211 111 111111111111 224678999999764432 Q sequence1 72 -LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 150 (184) Q Consensus 72 -~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184) .....+..+|++++|+|+++..+.... .+....... ..|+++|+||+|+....... .... ....... T Consensus 255 ~~~~~~~~~~d~~ilvid~~~~~~~~~~--~~~~~~~~~--~~pviiv~nK~D~~~~~~~~--~~~~------~~~~~~~ 322 (439) T 1MKY_A 255 YRVVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMERR--GRASVVVFNKWDLVVHREKR--YDEF------TKLFREK 322 (439) T ss_dssp HHHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSTTGGGC--HHHH------HHHHHHH T ss_pred HHHHHHHhhCCEEEEEeeCCCCCCHHHH--HHHHHHHHh--CCCEEEEEechhcCCcchHH--HHHH------HHHHHHH Confidence 122344678999999999875433221 223322222 48999999999998643210 0000 0000111 Q sequence1 151 ANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 151 ~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ........++++|++++.++.+++..+...+. T Consensus 323 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 354 (439) T 1MKY_A 323 LYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA 354 (439) T ss_dssp CGGGTTSCEEECBTTTTBSHHHHHHHHHHHHH T ss_pred hcccCCCCEEEeeCCCCCCHHHHHHHHHHHHH Confidence 11122357889999999999999988776543
##### No 336 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4DCU_A GTPase Der; GTPASE, ENGA, GDP, PROTEIN BINDING; HET: GDP; 2.0A {Bacillus subtilis} Probab=99.41 E-value=1e-16 Score=122.89 Aligned_cols=166 Identities=15% Similarity=0.135 Sum_probs=84.0 Template_Neff=10.800 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD-----------RLR 73 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----------~~~ 73 (184) .....+|+++|.+|+|||||++++.............................+.+||++|..... ... T Consensus 192 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 271 (456) T 4DCU_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456) T ss_dssp ----------CSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEEEET-----TGGGTTTBTTBCCCCSHHHHHHH T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHhCCCccccCCCCCCcccceEEEEEECCEEEEEEECCCCCCCCCcccchhHHHHHHH Confidence 345689999999999999999999876543211110001111111122234578999999953211 112 Q sequence1 74 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 153 (184) Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184) ..+...++++++|+|.++. +......+...+.. ...|+++|+||+|+....... .... .......... T Consensus 272 ~~~~~~~d~vv~v~d~~~~--~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~--~~~~------~~~~~~~~~~ 339 (456) T 4DCU_A 272 LKAIDRSEVVAVVLDGEEG--IIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDEST--MKEF------EENIRDHFQF 339 (456) T ss_dssp HHHHHHCSEEEEEEETTTC--CCHHHHHHHHHHHH--TTCEEEEEEECGGGSCCCSSH--HHHH------HHHHHHHCGG T ss_pred HHHHhhCCEEEEEEeCCCC--CCHHHHHHHHHHHH--hCCCEEEEEeccccCCCCHHH--HHHH------HHHHHHHHHh Confidence 2345678899999987753 22222233333322 258999999999998742210 0000 0000111111 Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) .....++++||.++.|+.+++.++...+. T Consensus 340 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 368 (456) T 4DCU_A 340 LDYAPILFMSALTKKRIHTLMPAIIKASE 368 (456) T ss_dssp GTTSCEEECCTTTCTTGGGHHHHHHHHHH T ss_pred cCCCCEEEccCCCCCCHHHHHHHHHHHHH Confidence 12367889999999999999988776554
##### No 337 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5KH0_B HydF; [FEFE]-HYDROGENASE MATURASE OXIDOREDUCTASE, OXIDOREDUCTASE; HET: SF4; 2.8A {Thermosipho melanesiensis (strain DSM 12029 / CIP 104789 / BI429)} Probab=99.41 E-value=1.1e-16 Score=121.01 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=87.8 Template_Neff=9.800 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR-------LR 73 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~ 73 (184) +....+.+|+++|..++|||||++++.+...... ..+++.......+... ....+.+||++|+..+.. .+ T Consensus 3 ~~~~~~~~I~v~G~~~~GKStLin~l~~~~~~~~~~~~~~t~d~~~~~~~~~-~~~~~~liDt~G~~~~~~~~~~~~~~~ 81 (396) T 5KH0_B 3 ASGGFRKYIAITGRRNVGKSSFMNALIGQEVSIVSNVAGTTTDPVFKSMELS-PVGPITLIDTPGLDDVGELGIKRIKKA 81 (396) T ss_dssp -----CEEEEEEECTTSCHHHHHHHHHTTCCCCC------------CEEECS-SSCEEEEEECC-------------CCT T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhCCCcCeecCCCceecccEEEeeeeC-CCCCEEEEECCCCCCCchHhHHHHHHH Confidence 4567789999999999999999999987654221 1111111111122221 224678999999876543 34 Q sequence1 74 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 153 (184) Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184) ...+..+|++++|++......... +...+... ..|+++++||+|+........ .... T Consensus 82 ~~~~~~~d~vilvvd~~~~~~~~~----~~~~~~~~--~~piivv~NK~D~~~~~~~~~-----------------~~~~ 138 (396) T 5KH0_B 82 KKSLYRADCGILIVDDIPGNFEEQ----IIKLFKEL--EIPYFIAINKIDTIDHENIEK-----------------EYKK 138 (396) T ss_dssp HHHHTTCSEEEEEESSSCCHHHHH----HHHHHHHT--TCCEEEEECCTTTSCTTHHHH-----------------SSGG T ss_pred HHHHhhCCEEEEEEeCCCCChHHH----HHHHHHHc--CCCEEEEEEccccCCHHHHHH-----------------HHHh Confidence 455678899999999865322111 22222221 589999999999875321100 0111 Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) .+ ..++.+|+.++.++.++++++...+ T Consensus 139 ~~-~~~i~iSa~~g~~i~~l~~~i~~~~ 165 (396) T 5KH0_B 139 YN-VPILKVSALKKIGFEKIGKTINSIL 165 (396) T ss_dssp GC-SCEEECBTTTTBSGGGHHHHHHHHS T ss_pred cC-CCEEEeecCcccCHHHHHHHHHHhC Confidence 12 4688999999999999998876543
##### No 338 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5KH0_D HydF; [FEFE]-HYDROGENASE MATURASE OXIDOREDUCTASE, OXIDOREDUCTASE; HET: SF4; 2.8A {Thermosipho melanesiensis (strain DSM 12029 / CIP 104789 / BI429)} Probab=99.41 E-value=1.1e-16 Score=121.01 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=83.5 Template_Neff=9.800 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR-------LR 73 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~ 73 (184) +....+.+|+++|..++|||||++++.+...... ..+++.......+... ....+.+||++|+..+.. .+ T Consensus 3 ~~~~~~~~I~v~G~~~~GKStLin~l~~~~~~~~~~~~~~t~d~~~~~~~~~-~~~~~~liDt~G~~~~~~~~~~~~~~~ 81 (396) T 5KH0_D 3 ASGGFRKYIAITGRRNVGKSSFMNALIGQEVSIVSNVAGTTTDPVFKSMELS-PVGPITLIDTPGLDDVGELGIKRIKKA 81 (396) T ss_dssp -----CEEEEEEECSSSCHHHHHHHHHC------------------CEEECS-SSCEEEEEC--------------CHHH T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhCCCcCeecCCCceecccEEEeeeeC-CCCCEEEEECCCCCCCchHhHHHHHHH Confidence 4567789999999999999999999987654221 1111111111122221 224678999999876543 34 Q sequence1 74 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 153 (184) Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184) ...+..+|++++|++......... +...+... ..|+++++||+|+........ .... T Consensus 82 ~~~~~~~d~vilvvd~~~~~~~~~----~~~~~~~~--~~piivv~NK~D~~~~~~~~~-----------------~~~~ 138 (396) T 5KH0_D 82 KKSLYRADCGILIVDDIPGNFEEQ----IIKLFKEL--EIPYFIAINKIDTIDHENIEK-----------------EYKK 138 (396) T ss_dssp HHHHTTCSEEEEEESSSCCHHHHH----HHHHHHHT--TCCEEEEECCTTTSCTTHHHH-----------------SSST T ss_pred HHHHhhCCEEEEEEeCCCCChHHH----HHHHHHHc--CCCEEEEEEccccCCHHHHHH-----------------HHHh Confidence 455678899999999865322111 22222221 589999999999875321100 0111 Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) .+ ..++.+|+.++.++.++++++...+ T Consensus 139 ~~-~~~i~iSa~~g~~i~~l~~~i~~~~ 165 (396) T 5KH0_D 139 YN-VPILKVSALKKIGFEKIGKTINSIL 165 (396) T ss_dssp TC-SCEEECBTTTTBSGGGHHHHHHHHS T ss_pred cC-CCEEEeecCcccCHHHHHHHHHHhC Confidence 12 4688999999999999998876543
##### No 339 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3GEI_B tRNA modification GTPase mnmE (E.C.3.6.-.-); G protein, G domain, GTPase; HET: GCP; 3.4A {Chlorobium tepidum} Probab=99.40 E-value=1.4e-16 Score=122.97 Aligned_cols=157 Identities=19% Similarity=0.213 Sum_probs=82.4 Template_Neff=8.500 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--------RPLS 76 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 76 (184) ...++|+++|.+|+|||||++++........ ..+.+..... ..........+.+||++|....... .... T Consensus 231 ~~~~~V~ivG~~~aGKSSLln~L~~~~~~~v~~~~gtt~d~~-~~~~~~~~~~v~liDT~G~~~~~~~i~~~~~~~~~~~ 309 (476) T 3GEI_B 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYI-EECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476) T ss_dssp HHCEEEEEECCTTSSHHHHHHHHC-------------------CCEEEETTEEEEEEC--------------------CC T ss_pred hcCcEEEEECCCcchHHHHHHHHhccchhhhcCCCCCCccee-EEEEEeCCcEEEEEeCCccccCCchhhHHHHHHHHHH Confidence 4467999999999999999999987653221 1111111111 1111112457889999996543211 1124 Q sequence1 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184) Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184) ...+|++++|+|.++...... ...+...... .+..|+++|+||+|+....... . ...... .. T Consensus 310 ~~~ad~vl~vvD~s~~~~~~~-~~~~~~l~~~-~~~~~iivV~nK~Dl~~~~~~~--~-------------~~~~~~-~~ 371 (476) T 3GEI_B 310 MAEADLILYLLDLGTERLDDE-LTEIRELKAA-HPAAKFLTVANKLDRAANADAL--I-------------RAIADG-TG 371 (476) T ss_dssp CSSCSEEEEEEETTTSSSCCT-THHHHHHHHH-CTTSEEEEEEECTTTCSSCHHH--H-------------HHHHHT-TT T ss_pred hhcCCEEEEEeeCCCcCchHH-HHHHHHHHHh-CCCCCEEEEechhHHHhcHHHH--H-------------HHHHcC-CC Confidence 457899999999876322211 1222222211 1357899999999998532110 0 000111 12 Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) ..++.+|++++.|+++++..+.+.+ T Consensus 372 ~~~i~vSa~~g~gi~~L~~~i~~~~ 396 (476) T 3GEI_B 372 TEVIGISALNGDGIDTLKQHMGDLV 396 (476) T ss_dssp SCEEECBTTTTBSHHHHHHHHTTTT T ss_pred CceEEeeccCCCCHHHHHHHHHHHH Confidence 5688899999999999887766543
##### No 340 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2CXX_A Probable GTP-binding protein engB; GTP-binding protein, Structural Genomics, NPPSFA; HET: GDP; 1.7A {Pyrococcus horikoshii} SCOP: c.37.1.8 Probab=99.40 E-value=1.4e-16 Score=108.13 Aligned_cols=157 Identities=15% Similarity=0.168 Sum_probs=89.6 Template_Neff=11.400 Q sequence1 9 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLE-----------DYD----RLR 73 (184) Q Consensus 9 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-----------~~~----~~~ 73 (184) .+|+++|+.++|||+|++++....+.....+..... . .. .....+.+||++|.. .+. ..+ T Consensus 2 ~~i~v~G~~~~GKtsl~~~l~~~~~~~~~~~~~~~~-~--~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 76 (190) T 2CXX_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK-I--IE--IEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190) T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS-C--EE--EEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCCCCCccee-E--EE--EeecCeEEEeeCCcccccCCCHHHHHHHHHHHHHHH Confidence 579999999999999999998776543222111111 0 11 112256789999932 211 122 Q sequence1 74 PLSYPDTDVILMCFSIDSPDSLENIPEKWTP---------EVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVK 143 (184) Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~---------~~~~-~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~ 143 (184) ......+|++++|+|........ ..|.. .... .....|+++++||.|+...... ......... T Consensus 77 ~~~~~~~d~~i~v~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nk~D~~~~~~~--~~~~~~~~~-- 149 (190) T 2CXX_A 77 EDNAKNIDVAVLVVDGKAAPEII---KRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQE--VINFLAEKF-- 149 (190) T ss_dssp HHHGGGCCEEEEEEETTHHHHHH---HHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHH--HHHHHHHHH-- T ss_pred HHccccCCEEEEEEcCCCcHHHH---HHHHHcCCCcccHHHHHHHHHcCCCEEEEEecHHHcccHHH--HHHHHHHhc-- Confidence 33456789999999987632211 11110 0111 1136789999999998753211 000000000 Q sequence1 144 PEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 144 ~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ....... ...++++|++++.|+.+++.++.+.+. T Consensus 150 ----~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 183 (190) T 2CXX_A 150 ----EVPLSEI-DKVFIPISAKFGDNIERLKNRIFEVIR 183 (190) T ss_dssp ----TCCGGGH-HHHEEECCTTTCTTHHHHHHHHHHHHH T ss_pred ----CCCHHHC-CCcEEecccccCCCHHHHHHHHHHHHH Confidence 0000011 135889999999999999998887664
##### No 341 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4A9A_A RIBOSOME-INTERACTING GTPASE 1, TRANSLATION MACHINERY-ASSOCIATED; TRANSLATION, DRG-DFRP COMPLEX, RIBOSOME BINDING; 2.67A {SACCHAROMYCES CEREVISIAE} Probab=99.40 E-value=1.5e-16 Score=119.46 Aligned_cols=155 Identities=15% Similarity=0.057 Sum_probs=95.6 Template_Neff=9.600 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-NYVADIEVDGKQVELALWDTAGLEDYD-------RLRPLSY 77 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~ 77 (184) ...++|+++|.+++|||||++++..........+.... ........ ....+.+||+||..... ......+ T Consensus 70 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~~ 147 (376) T 4A9A_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRY--KGAKIQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376) T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEE--TTEEEEEEECGGGCCC-----CHHHHHHHHH T ss_pred CCceEEEEEecCCCCccHHHHHHhCCCCcccCCccccceeEEEEEEE--CCeEEEEEECCCcccCccCcchHHHHHHHHH Confidence 34568999999999999999999876543221111111 11111111 24578999999976542 2222355 Q sequence1 78 PDTDVILMCFSIDSPDSLENIPEKWTP----------------------------------------------------- 104 (184) Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~----------------------------------------------------- 104 (184) ..+|++++|+|++++.+.......|.. T Consensus 148 ~~~d~ii~v~D~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 227 (376) T 4A9A_A 148 RTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEI 227 (376) T ss_dssp HHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEE T ss_pred hcCCEEEEEEeCCCchHHHHHHHHHHHHccccccCCCccceeeecccCCceeeeCCCcccCCHHHHHHHHHHcCCCCCEE Confidence 788999999999886543221111111 Q sequence1 105 -------------EVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGV 170 (184) Q Consensus 105 -------------~~~~-~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 170 (184) .+.. .....|+++|+||+|+........ . .....++++|++++.|+ T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~--------------~------~~~~~~~~~Sa~~~~~i 287 (376) T 4A9A_A 228 AFRCDATVDDLIDVLEASSRRYMPAIYVLNKIDSLSIEELEL--------------L------YRIPNAVPISSGQDWNL 287 (376) T ss_dssp EECSCCCHHHHHHHHTTTTCEEECEEEEEECGGGSCHHHHHH--------------H------TTSTTEEECCTTTCTTH T ss_pred EEeCCCCHHHHHHHHHhcccccccEEEEEEcCCcCCHHHHHH--------------H------hcCCCeEEeeCCCCcCH Confidence 0100 023589999999999876432100 0 12256888999999999 Q sequence1 171 REVFEMATRAAL 182 (184) Q Consensus 171 ~~~~~~~~~~~~ 182 (184) .+++.++.+.+. T Consensus 288 ~~l~~~l~~~l~ 299 (376) T 4A9A_A 288 DELLQVMWDRLN 299 (376) T ss_dssp HHHHHHHHHHHC T ss_pred HHHHHHHHHHcC Confidence 999888776653
##### No 342 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3GEE_A tRNA modification GTPase mnmE (E.C.3.6.-.-); G protein, GTPase, tRNA modification; HET: GDP, FON; 2.95A {Chlorobium tepidum} Probab=99.40 E-value=1.6e-16 Score=122.71 Aligned_cols=157 Identities=18% Similarity=0.202 Sum_probs=82.4 Template_Neff=8.600 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY-VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--------RPLS 76 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 76 (184) .+.++|+++|.+|+|||||++++......... .+.+..... ..........+.+||++|....... .... T Consensus 231 ~~~~~V~ivG~~~aGKSTLln~L~~~~~~~v~~~~~tt~d~~-~~~~~~~~~~v~liDTaG~~~~~~~i~~~~~~~~~~~ 309 (476) T 3GEE_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYI-EECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476) T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC--------------------CC T ss_pred ccCcEEEEECCCcchHHHHHHHHhcccchhhcCCCCCCcceE-EEEEEeCCcEEEEecCcccccCChhhhHHHHHHHHHh Confidence 44679999999999999999999876532211 111111111 1111122457899999996533211 1124 Q sequence1 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184) Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184) ...+|++++|+|.++...... ...+...... .+..|+++|+||+|+....... .. ..... .. T Consensus 310 ~~~ad~il~VvD~s~~~~~~~-~~~l~~l~~~-~~~~~iivV~nK~Dl~~~~~~~--~~-------------~~~~~-~~ 371 (476) T 3GEE_A 310 MAEADLILYLLDLGTERLDDE-LTEIRELKAA-HPAAKFLTVANKLDRAANADAL--IR-------------AIADG-TG 371 (476) T ss_dssp CSSCSEEEEEEETTTCSSGGG-HHHHHHHHHH-CTTSEEEEEEECTTSCTTTHHH--HH-------------HHHHH-HT T ss_pred hhcCCEEEEEeeCCCcccHHH-HHHHHHHHHh-CCCCCEEEEecchhHhhcHHHH--HH-------------HHHcC-CC Confidence 457899999999886322211 1222222211 1357899999999998642210 00 00011 12 Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) ..++.+|++++.|+++++..+.+.+ T Consensus 372 ~~~~~vSa~~g~gi~~l~~~i~~~~ 396 (476) T 3GEE_A 372 TEVIGISALNGDGIDTLKQHMGDLV 396 (476) T ss_dssp SCEEECBTTTTBSHHHHHHHHTHHH T ss_pred CceEEEEccCCCCHHHHHHHHHHHH Confidence 5688899999999998887766543
##### No 343 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3GEI_A tRNA modification GTPase mnmE (E.C.3.6.-.-); G protein, G domain, GTPase; HET: GCP; 3.4A {Chlorobium tepidum} Probab=99.40 E-value=1.6e-16 Score=122.71 Aligned_cols=157 Identities=18% Similarity=0.202 Sum_probs=82.4 Template_Neff=8.600 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY-VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--------RPLS 76 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 76 (184) .+.++|+++|.+|+|||||++++......... .+.+..... ..........+.+||++|....... .... T Consensus 231 ~~~~~V~ivG~~~aGKSTLln~L~~~~~~~v~~~~~tt~d~~-~~~~~~~~~~v~liDTaG~~~~~~~i~~~~~~~~~~~ 309 (476) T 3GEI_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYI-EECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476) T ss_dssp HHCEEEEEECCTTSSHHHHHHHHC-------------------CCEEEETTEEEEEEC--------------------CC T ss_pred ccCcEEEEECCCcchHHHHHHHHhcccchhhcCCCCCCcceE-EEEEEeCCcEEEEecCcccccCChhhhHHHHHHHHHh Confidence 44679999999999999999999876532211 111111111 1111122457899999996533211 1124 Q sequence1 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184) Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184) ...+|++++|+|.++...... ...+...... .+..|+++|+||+|+....... .. ..... .. T Consensus 310 ~~~ad~il~VvD~s~~~~~~~-~~~l~~l~~~-~~~~~iivV~nK~Dl~~~~~~~--~~-------------~~~~~-~~ 371 (476) T 3GEI_A 310 MAEADLILYLLDLGTERLDDE-LTEIRELKAA-HPAAKFLTVANKLDRAANADAL--IR-------------AIADG-TG 371 (476) T ss_dssp CSSCSEEEEEEETTTSSSCCT-THHHHHHHHH-CTTSEEEEEEECTTTCSSCHHH--HH-------------HHHHT-TT T ss_pred hhcCCEEEEEeeCCCcccHHH-HHHHHHHHHh-CCCCCEEEEecchhHhhcHHHH--HH-------------HHHcC-CC Confidence 457899999999886322211 1222222211 1357899999999998642210 00 00011 12 Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) ..++.+|++++.|+++++..+.+.+ T Consensus 372 ~~~~~vSa~~g~gi~~l~~~i~~~~ 396 (476) T 3GEI_A 372 TEVIGISALNGDGIDTLKQHMGDLV 396 (476) T ss_dssp SCEEECBTTTTBSHHHHHHHHTTTS T ss_pred CceEEEEccCCCCHHHHHHHHHHHH Confidence 5688899999999998887766543
##### No 344 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2DYK_B GTP-binding protein; GTPase, ribosome-binding protein, Structural Genomics; HET: GDP; 1.96A {Thermus thermophilus} Probab=99.40 E-value=1.6e-16 Score=104.40 Aligned_cols=152 Identities=22% Similarity=0.220 Sum_probs=88.0 Template_Neff=12.200 Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-PTVFENYVADIEVDGKQVELALWDTAGLE-------DYDRLRPLSYPD 79 (184) Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-------~~~~~~~~~~~~ 79 (184) +++++++|.+++|||++++++.......... +..... ............+.+||++|.. .+...+...+.. T Consensus 1 ~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 79 (161) T 2DYK_B 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRD-LKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161) T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------C-CEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTT T ss_pred CceEEEECCCCCCHHHHHHHHhCCCCccccCCCCCccc-ceeceEEeCCCeEEEEeCCCcCCccHHHHHHHHHHHHHHhc Confidence 3689999999999999999998664322111 110000 1111111223467889999842 222233344556 Q sequence1 80 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 159 (184) Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184) +++++++++... ++......+...+.. ...|+++++||.|+........ .........+ T Consensus 80 ~~~~~~~~d~~~--~~~~~~~~~~~~~~~--~~~~~iiv~~k~d~~~~~~~~~-----------------~~~~~~~~~~ 138 (161) T 2DYK_B 80 AEVVLFAVDGRA--ELTQADYEVAEYLRR--KGKPVILVATKVDDPKHELYLG-----------------PLYGLGFGDP 138 (161) T ss_dssp CSEEEEEEESSS--CCCHHHHHHHHHHHH--HTCCEEEEEECCCSGGGGGGCG-----------------GGGGSSSCSC T ss_pred CCEEEEEEeCCC--CCCHHHHHHHHHHHH--cCCCEEEEEeCCCCccchhhhH-----------------HHhcCCCCCC Confidence 778888877643 233332333333322 3689999999999875321100 0011122467 Q sequence1 160 MECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 160 ~~~s~~~~~~i~~~~~~~~~~~ 181 (184) +++|+.++.++.+++.++.+.+ T Consensus 139 ~~~s~~~~~~~~~~~~~l~~~~ 160 (161) T 2DYK_B 139 IPTSSEHARGLEELLEAIWERL 160 (161) T ss_dssp EECBTTTTBSHHHHHHHHHHHC T ss_pred cccccccccCHHHHHHHHHHhC Confidence 8899999999999999887654
##### No 345 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3R7W_C GTP-binding protein GTR1, GTP-binding protein; Rag GTPases, Gtr1p, Gtr2p, mTOR; HET: GNP; 2.773A {Saccharomyces cerevisiae} Probab=99.38 E-value=2.4e-16 Score=115.07 Aligned_cols=165 Identities=14% Similarity=0.254 Sum_probs=93.2 Template_Neff=10.700 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGLEDYDR-----LRPLSYPD 79 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~ 79 (184) .+++|+++|..|+||||+++.+.+....... .+.+.......... .....+.+||+||+..+.. .+..++.. T Consensus 2 ~~~kv~l~G~~~sGKSsl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~~ 80 (307) T 3R7W_C 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF-LGNMTLNLWDCGGQDVFMENYFTKQKDHIFQM 80 (307) T ss_dssp CCEEEEEECCTTSCHHHHHHHHHSCCCTTGGGGCCCCCSEEEEEEEE-TTTEEEEEEEECCSHHHHHHHHTTTHHHHHTT T ss_pred CCeEEEEECCCCCCHHHHHHHHhcCCChhhhccccceeeeEEEeeEe-cCceEEEEEEcCCChHhHHHhhHHhHhhhhcc Confidence 4689999999999999999999875332111 11110100111111 1234788999999875533 45566788 Q sequence1 80 TDVILMCFSIDSPDSLENIPEKWTP---EVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN--RI 154 (184) Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~---~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 154 (184) +|++++|+|+++....... ..+.. .+....+..|+++++||+|+............... ....... .. T Consensus 81 ~d~li~V~d~~~~~~~~~~-~~~~~~l~~l~~~~~~~~vivv~nK~D~~~~~~~~~~~~~~~~------~l~~~~~~~~~ 153 (307) T 3R7W_C 81 VQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMK------NLSETSSEFGF 153 (307) T ss_dssp EEEEEEEEETTCTTHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECTTSSCHHHHHHHHHHHHH------HHHHHHHTTTC T ss_pred cCEEEEEEeCCChhHHHHH-HHHHHHHHHHHHHCCCCcEEEEEEccccCCHHHHHHHHHHHHH------HHHhhccccCC Confidence 9999999999875443332 22222 22222246899999999999864322111111000 0001111 11 Q sequence1 155 GAFGYMECSAKTKDGVREVFEMATRA 180 (184) Q Consensus 155 ~~~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184) ....++.+|+.++ ++.+.+..++.. T Consensus 154 ~~~~~~~~S~~~~-~~~~~~~~~~~~ 178 (307) T 3R7W_C 154 PNLIGFPTSIWDE-SLYKAWSQIVCS 178 (307) T ss_dssp CSCEEEEECTTST-HHHHHHHHHHHT T ss_pred CceEEEecccCch-HHHHHHHHHHHH Confidence 1246778888865 555655555543
##### No 346 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4Q5I_B Ferrous iron transport protein B; G PROTEIN, IRON TRANSPORT, GTPASE; 2.8A {Escherichia coli} Probab=99.37 E-value=2.8e-16 Score=112.99 Aligned_cols=151 Identities=15% Similarity=0.127 Sum_probs=89.6 Template_Neff=9.800 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRL----------RPL 75 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~ 75 (184) +.++|+++|.+|+|||||++++.+........+... ......+ ......+.+||+||....... ... T Consensus 2 ~~~~I~l~G~~~~GKSslin~l~~~~~~~~~~~g~t~~~~~~~~--~~~~~~~~ivDtpG~~~~~~~~~~~~~~e~~~~~ 79 (270) T 4Q5I_B 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQF--STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (270) T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEE--ECSSCEEEEEECCCCSCSCCSSSCCCHHHHHHHH T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEE--EeCCCeEEEEECCCccCcCCcCCCCChHHHHHHH Confidence 467999999999999999999987654221111111 1111111 122346889999997543211 111 Q sequence1 76 S--YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 153 (184) Q Consensus 76 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184) + ...+|++++|+|.++... ....+.... ....|+++++||+|+......... ...+... T Consensus 80 ~~~~~~~d~ii~vvda~~~~~---~~~~~~~l~---~~~~p~ivvlnk~D~~~~~~~~~~-------------~~~l~~~ 140 (270) T 4Q5I_B 80 YILSGDADLLINVVDASNLER---NLYLTLQLL---ELGIPCIVALNMLDIAEKQNIRIE-------------IDALSAR 140 (270) T ss_dssp HHHHTCSSEEEEEEEGGGHHH---HHHHHHHHH---HTTCCEEEEEECHHHHHHTTEEEC-------------HHHHHHH T ss_pred HHHhCCCCEEEEEEecccchh---HHHHHHHHH---HhCCCEEEEEechHHHHHcCchHH-------------HHHHHHH Confidence 1 246889999999876432 111111111 236899999999999864322111 0111112 Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATR 179 (184) Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~ 179 (184) .+ .+++.+|+.++.++.+++..+.+ T Consensus 141 ~~-~~~v~~sa~~~~gi~~l~~~i~~ 165 (270) T 4Q5I_B 141 LG-CPVIPLVSARGRGIEALKLAIDR 165 (270) T ss_dssp HT-SCEEECCCGGGHHHHHHHHHHHT T ss_pred HC-CCEEEeecCCCCCHHHHHHHHHH Confidence 22 56888999999999888876654
##### No 347 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6RLB_E PROTEIN; dynein, cilia, intraflagellar transport, complex; 4.5A {Homo sapiens} Probab=99.37 E-value=2.9e-16 Score=117.00 Aligned_cols=166 Identities=18% Similarity=0.213 Sum_probs=99.7 Template_Neff=9.200 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEV--DGKQVELALWDTAGLEDYDRLRPLSYPD-- 79 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~-- 79 (184) .....+|+|+|..++|||||++++...... ..++....+.. .... ......+.+||++|...+..++..++.. T Consensus 28 ~~~~~~v~ivG~~~sGKSsli~~~~~~~~~--~~~t~~l~y~~~~~~~~~~~~~~~~~iwdl~g~~~~~~ll~~~l~~~~ 105 (351) T 6RLB_E 28 EIAEKFVFFIGSKNGGKTTIILRCLDRDEP--PKPTLALEYTYGRRAKGHNTPKDIAHFWELGGGTSLLDLISIPITGDT 105 (351) T ss_dssp CSSCCEEEEEECTTSSHHHHHHHHTTCCCC--CCSCCSSCCEEEEECCSSSCCCEEEEEEEEESSSSHHHHHTSSCCGGG T ss_pred cCCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCceeceEEEEEecCCCCCCCceEEEEEeCCCcchhHHccccCCCCc Confidence 345788999999999999999998866421 12222122211 1111 1224578999999987776666655554 Q sequence1 80 --TDVILMCFSIDSPDSLENIPEKWTPEVKHFC--------------------------------------PNVPIILVG 119 (184) Q Consensus 80 --~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------------~~~~~~vv~ 119 (184) .+++++|+|++.+.++......|...+.... ...|+++|+ T Consensus 106 ~~~~~~iiv~D~s~p~~~~~~l~~wl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~iPivIV~ 185 (351) T 6RLB_E 106 LRTFSLVLVLDLSKPNDLWPTMENLLQATKSHVDKVIMKLGKTNAKAVSEMRQKIWNNMPKDHPDHELIDPFPVPLVIIG 185 (351) T ss_dssp STTEEEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCTHHHHHHHHHHTTTSSSSSCCCCCSSCCCSCEEEEE T ss_pred hhceEEEEEeeCCCcchHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCCCCcccccCCCCCEEEEe Confidence 6799999999988765444444443332211 138999999 Q sequence1 120 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 120 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) ||+|+...... ... .........++..++ ..++++|+ .+.++..++..+.+.+ T Consensus 186 ~K~D~~~~~~~-~~~------~~i~~~lR~~a~~~g-a~l~~tS~-~~~~v~~l~~~l~~~~ 238 (351) T 6RLB_E 186 SKYDVFQDFES-EKR------KVICKTLRFVAHYYG-ASLMFTSK-SEALLLKIRGVINQLA 238 (351) T ss_dssp ECGGGGGGSCH-HHH------HHHHHHHHHHHHHHT-CEEECCCS-SCTHHHHHHHHHTTST T ss_pred echHhhccCCH-HHH------HHHHHHHHHHHHHcC-CEEEEEcC-CHHHHHHHHHHHHHHH Confidence 99999764211 000 011122223333433 56778884 4467777666655544
##### No 348 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6SC2_F DYNC2H1 variant protein; dynein, cilia, intraflagellar transport, complex; HET: ADP, ATP; 3.9A {Homo sapiens} Probab=99.37 E-value=2.9e-16 Score=117.00 Aligned_cols=166 Identities=18% Similarity=0.213 Sum_probs=99.7 Template_Neff=9.200 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEV--DGKQVELALWDTAGLEDYDRLRPLSYPD-- 79 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~-- 79 (184) .....+|+|+|..++|||||++++...... ..++....+.. .... ......+.+||++|...+..++..++.. T Consensus 28 ~~~~~~v~ivG~~~sGKSsli~~~~~~~~~--~~~t~~l~y~~~~~~~~~~~~~~~~~iwdl~g~~~~~~ll~~~l~~~~ 105 (351) T 6SC2_F 28 EIAEKFVFFIGSKNGGKTTIILRCLDRDEP--PKPTLALEYTYGRRAKGHNTPKDIAHFWELGGGTSLLDLISIPITGDT 105 (351) T ss_dssp CCCCCEEEEEECTTSSHHHHHHHHTTCCCC--CCSCCSSEEEEEEECCSSSCCCEEEEEEEEESSSSHHHHHTSSCCGGG T ss_pred cCCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCceeceEEEEEecCCCCCCCceEEEEEeCCCcchhHHccccCCCCc Confidence 345788999999999999999998866421 12222122211 1111 1224578999999987776666655554 Q sequence1 80 --TDVILMCFSIDSPDSLENIPEKWTPEVKHFC--------------------------------------PNVPIILVG 119 (184) Q Consensus 80 --~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------------~~~~~~vv~ 119 (184) .+++++|+|++.+.++......|...+.... ...|+++|+ T Consensus 106 ~~~~~~iiv~D~s~p~~~~~~l~~wl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~iPivIV~ 185 (351) T 6SC2_F 106 LRTFSLVLVLDLSKPNDLWPTMENLLQATKSHVDKVIMKLGKTNAKAVSEMRQKIWNNMPKDHPDHELIDPFPVPLVIIG 185 (351) T ss_dssp GGGEEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCTHHHHHHHHHHTTTSCSSSCCCCCSSCCCSCEEEEE T ss_pred hhceEEEEEeeCCCcchHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCCCCcccccCCCCCEEEEe Confidence 6799999999988765444444443332211 138999999 Q sequence1 120 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 120 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) ||+|+...... ... .........++..++ ..++++|+ .+.++..++..+.+.+ T Consensus 186 ~K~D~~~~~~~-~~~------~~i~~~lR~~a~~~g-a~l~~tS~-~~~~v~~l~~~l~~~~ 238 (351) T 6SC2_F 186 SKYDVFQDFES-EKR------KVICKTLRFVAHYYG-ASLMFTSK-SEALLLKIRGVINQLA 238 (351) T ss_dssp ECGGGGGGSCH-HHH------HHHHHHHHHHHHHHT-CEEECCSS-SCTHHHHHHHHHTTTT T ss_pred echHhhccCCH-HHH------HHHHHHHHHHHHHcC-CEEEEEcC-CHHHHHHHHHHHHHHH Confidence 99999764211 000 011122223333433 56778884 4467777666655544
##### No 349 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3I8S_B Ferrous iron transport protein B; GTPase, GPCR, iron uptake, Feo; 1.8A {Escherichia coli} Probab=99.37 E-value=3e-16 Score=113.06 Aligned_cols=152 Identities=14% Similarity=0.130 Sum_probs=89.4 Template_Neff=9.800 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-NYVADIEVDGKQVELALWDTAGLEDYDRL----------RPL 75 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~ 75 (184) +.++|+++|.+|+|||||++++++........+.... .....+. .....+.+||+||....... ... T Consensus 2 ~~~~I~l~G~~~~GKSslin~l~~~~~~~~~~~g~t~~~~~~~~~--~~~~~~~lvDtpG~~~~~~~~~~~~~~e~~~~~ 79 (274) T 3I8S_B 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFS--TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274) T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTTCEEEEESTTSSCEEEEEEEE--CSSCEEEEEECCCCSCSCCSSSCCCHHHHHHHH T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceEEeeEEEEE--eCCCeEEEEECCCccccCCcCCCCCHHHHHHHH Confidence 4689999999999999999999876532211111111 1111111 12346889999997543211 111 Q sequence1 76 S--YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 153 (184) Q Consensus 76 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184) + ...+|++++|+|.++... ... +...+. ....|+++|+||+|+......... ...+... T Consensus 80 ~~~~~~~d~ii~vvd~~~~~~---~l~-l~~~l~--~~~~p~ivvlnk~D~~~~~~~~~~-------------~~~l~~~ 140 (274) T 3I8S_B 80 YILSGDADLLINVVDASNLER---NLY-LTLQLL--ELGIPCIVALNMLDIAEKQNIRIE-------------IDALSAR 140 (274) T ss_dssp HHHHTCSSEEEEEEEGGGHHH---HHH-HHHHHH--HHTCCEEEEEECHHHHHHTTCCBC-------------HHHHHHH T ss_pred HHHhCCCCEEEEEEeccchHH---HHH-HHHHHH--HhCCCEEEEeechHHHHHcCchHH-------------HHHHHHH Confidence 1 246889999988876322 111 111111 135899999999999864322111 1111122 Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRA 180 (184) Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184) .+ .+++++|+.++.|+.++++.+.+. T Consensus 141 lg-~~~v~vsa~~~~gi~~l~~~i~~~ 166 (274) T 3I8S_B 141 LG-CPVIPLVSTRGRGIEALKLAIDRY 166 (274) T ss_dssp HT-SCEEECCCGGGHHHHHHHHHHHTC T ss_pred HC-CCEEEccCCCCCCHHHHHHHHHHH Confidence 22 578889999999999888766543
##### No 350 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4NCF_A Eukaryotic translation initiation factor 5B; Translation initiation, GTPase, eIF5B/IF2, Subunit; HET: GDP; 3.015A {Saccharomyces cerevisiae} Probab=99.37 E-value=3.5e-16 Score=120.29 Aligned_cols=119 Identities=18% Similarity=0.129 Sum_probs=72.2 Template_Neff=10.100 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVD----------------GKQVELALWDTAGL 66 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~----------------~~~~~~~i~D~~g~ 66 (184) ...++++|+++|..++|||||++++..........+..... ....+..+ .....+.+||+||+ T Consensus 6 ~~~~~~~V~viG~~~~GKTtLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtpG~ 85 (457) T 4NCF_A 6 KDLRSPICCILGHVDTGKTKLLDKIRQTNVQGGEAGGITQQIGATYFPIDAIKAKTKVMAEYEKQTFDVPGLLVIDTPGH 85 (457) T ss_dssp -CCCCCEEEEEECTTSSHHHHHHHHHSCCCC---CCCCEECSSCEE-EHHHHHHHTSGGGGTSCCCCCSSEEEEECSSSS T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHcCCCCCccccCCCccceeeEEEecccchhhhccceeeeeccccCCcEEEEeCCCC Confidence 34667899999999999999999997654332211111000 00000000 11124779999999 Q sequence1 67 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184) Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184) +.+...+..+...+|++++|+|+++....+ ..+. ...+.. ...|+++++||+|+.. T Consensus 86 ~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~-~~e~-l~~~~~--~~~p~ivv~nK~D~~~ 141 (457) T 4NCF_A 86 ESFSNLRSRGSSLCNIAILVIDIMHGLEQQ-TIES-IKLLRD--RKAPFVVALNKIDRLY 141 (457) T ss_dssp GGGSSCTTTHHHHCSEEEEEEETTTCSCHH-HHHH-HHHHTC--CEE---EEEECGGGST T ss_pred HHHHHHHHHHhcCCCEEEEEEECCCCCCHH-HHHH-HHHHHH--hCCCEEEEEecCCCCC Confidence 988888888888999999999998632211 1112 222222 2578999999999875
##### No 351 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4TMX_A eIF5B; Translation factor, GTPase, monovalent cation; HET: GTP, EDO; 1.5A {Chaetomium thermophilum} Probab=99.36 E-value=4.4e-16 Score=115.37 Aligned_cols=118 Identities=19% Similarity=0.149 Sum_probs=74.9 Template_Neff=10.900 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIE----------------VDGKQVELALWDTAGLE 67 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~----------------~~~~~~~~~i~D~~g~~ 67 (184) ....++|+++|..++|||||+++|................. ...+. .......+.+||+||++ T Consensus 7 ~~~~~~I~viG~~~sGKStLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~pG~~ 86 (345) T 4TMX_A 7 NLRSPICCILGHVNTGKTKLLDKIRQTNVQEGEAGGITQQIGATYFPVEAIKQKTAVVNKDGKFEFKVPGLLIIDTPGHE 86 (345) T ss_dssp GBCCCEEEEEESTTSSHHHHHHHHHTCCHHHHSGGGCCCSCEEEEEEHHHHHHHTGGGSTTSCSCCCCSEEEEEECCCSG T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhhcccccCcCCcceecceeEEcCHHHHhhhceeecCCCCccccCCcEEEEECCCCH Confidence 45678899999999999999999986644322111000000 00000 01112348899999988 Q sequence1 68 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184) Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184) .+...+..++..+|++++|+|+.+...... .+.+ ..+.. ...|+++++||+|+.. T Consensus 87 ~~~~~~~~~~~~~d~~ilvvd~~~~~~~~~-~~~l-~~~~~--~~~p~ivv~nK~D~~~ 141 (345) T 4TMX_A 87 SFSNLRSRGSSLCNIAILVVDIMHGLEPQT-IESL-RLLRE--RKTPFVVALNKIDRLY 141 (345) T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHH-HHHHH--HTCCEEEEEECGGGST T ss_pred HHHHHHHHHhhcCCEEEEEEecCCCCCHHH-HHHH-HHHHH--cCCCEEEEEEcHHhcc Confidence 887777777888999999999876432211 1122 12221 2578999999999875
##### No 352 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6AU6_A Guanine nucleotide-binding protein G(s) subunit; G protein, GDP, active conformation; HET: GDP, GOL; 1.7A {Homo sapiens} Probab=99.35 E-value=4.7e-16 Score=116.94 Aligned_cols=127 Identities=17% Similarity=0.175 Sum_probs=78.6 Template_Neff=9.200 Q sequence1 56 VELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDS----------PDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDL 124 (184) Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~ 124 (184) +.+.+||++|+..+...|..++..++++++|+|+++ ...+......+..+.... ....|+++++||.|+ T Consensus 200 ~~l~i~D~~g~~~~~~~~~~~~~~~~~ii~v~Dls~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iilv~nK~D~ 279 (377) T 6AU6_A 200 VNFHMFDVGGQRDERRKWIQSFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 279 (377) T ss_dssp EEEEEEEECCSGGGGGGGGGGCSSCSEEEEEEEGGGTTCBCTTTSCSBHHHHHHHHHHHHHTCGGGTTCCEEEEEECHHH T ss_pred EEEEEEEeCCChhHHHHHHHHccCCcEEEEEEechhcccccccCcCccHHHHHHHHHHHHHhChhhhcCeEEEEccChHH Confidence 567899999998887788888889999999999997 344444444444333221 126889999999999 Q sequence1 125 RNDEHTR--RELAKMKQEPV----------------KPEEGRDM-----ANR-------IGAFGYMECSAKTKDGVREVF 174 (184) Q Consensus 125 ~~~~~~~--~~~~~~~~~~~----------------~~~~~~~~-----~~~-------~~~~~~~~~s~~~~~~i~~~~ 174 (184) ....... ..+........ ....+..+ ... ...+.++++|++++.++..+| T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f 359 (377) T 6AU6_A 280 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF 359 (377) T ss_dssp HHHHHHHCSSCGGGTSGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHHHSSCTTCCEEEEECCTTCHHHHHHHH T ss_pred HHHHHHcCCccHHHHCccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHcccCCCCceeEEEeeeecCHHHHHHHH Confidence 8643210 00100000000 00011111 000 112567889999999999999 Q sequence1 175 EMATRAAL 182 (184) Q Consensus 175 ~~~~~~~~ 182 (184) ..+.+.+. T Consensus 360 ~~i~~~i~ 367 (377) T 6AU6_A 360 NDCRDIIQ 367 (377) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH Confidence 88877654
##### No 353 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4B43_A TRANSLATION INITIATION FACTOR IF-2; TRANSLATION, INITIATION, GTP HYDROLYSIS MECHANISM; HET: GOL; 1.937A {THERMUS THERMOPHILUS} Probab=99.35 E-value=4.9e-16 Score=116.24 Aligned_cols=163 Identities=22% Similarity=0.223 Sum_probs=90.1 Template_Neff=9.900 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) ....+|+++|..++|||||++++..........+..... ............+.+||+||+..+...+..+...+|++++ T Consensus 71 ~~~~~I~viG~~~~GKStLi~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~il 149 (363) T 4B43_A 71 RRPPVVVIMGHVDHGLTTLLDYLRKSRIAEKEAGGITQH-VGAFEVKTPQGTVVFIDTPGAEAFTTIRQRGAKVADIAVI 149 (363) T ss_dssp BCCCEEEEEECGGGSHHHHHHHHHHTTSTTCSSSCCCCC-CSEEEEEETTEEEEEESSCCCCC---------CCCSEEEE T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCcchhcCCceee-eEEEEEEcCCceEEEEECCChHHHHHHHHHHHhcCCEEEE Confidence 456789999999999999999998654432211111111 1111111123468899999998887777777888999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184) |+|.++.. .... ..+...+.. ...|+++++||+|+....... ......... ..........+++++|+. T Consensus 150 vvd~~~~~-~~~~-~~~~~~~~~--~~~piivvinK~D~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~ii~vSa~ 218 (363) T 4B43_A 150 VIAADDGI-MPQT-EEAIAHAKA--AGAKLIFAINKIDLPQADPEK-VKRQLMERG------FVPEEYGGDAIVIPISAK 218 (363) T ss_dssp EEETTTCC-CHHH-HHHHHHHHH--TTCEEEEEEECTTSTTCCHHH-HHHHHHHTT------CCBGGGTSSBCEEECCTT T ss_pred EEECCCCC-chhH-HHHHHHHHH--cCCcEEEEEECcCCCCCCHHH-HHHHHHHcC------CChHHhCCCeEEEECcCC Confidence 99987632 1112 122222222 257899999999986532110 000000000 000000112568899999 Q sequence1 166 TKDGVREVFEMATRA 180 (184) Q Consensus 166 ~~~~i~~~~~~~~~~ 180 (184) ++.|+.++++++... T Consensus 219 ~g~gi~~l~~~l~~~ 233 (363) T 4B43_A 219 TGQGVQDLLEMILLL 233 (363) T ss_dssp TCTTHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHH Confidence 999999888776543
##### No 354 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5YT0_A Probable translation initiation factor IF-2; translation initiation factor, ribosomal stalk; HET: GDP; 1.89A {Aeropyrum pernix K1} Probab=99.35 E-value=5.7e-16 Score=115.76 Aligned_cols=118 Identities=21% Similarity=0.159 Sum_probs=72.8 Template_Neff=10.500 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE----NYVA-------------DIEVDGKQVELALWDTAGLE 67 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~----~~~~-------------~~~~~~~~~~~~i~D~~g~~ 67 (184) ..+.++|+++|..++|||||+++|............... .... ..........+.+||+||+. T Consensus 13 ~~~~~~I~viG~~~~GKStLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~ 92 (364) T 5YT0_A 13 RLRQPIVVVLGHVDHGKTTLLDKIRRTAVAAKEAGGITQHIGASIVPADVIEKIAEPLKKVIPVKLVIPGLLFIDTPGHE 92 (364) T ss_dssp -CCCCEEEEEECTTSSHHHHHHHHHHHHHHTC---CCEEETTEEEEEHHHHHHHTGGGTTTSCCCCCSCEEEEESSCSHH T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHhhccccccccCCccccceeEEcCHHHHHHHhhHhhhccCcccccCCeEEEeCCCcH Confidence 456789999999999999999999765432111100000 0000 00000111358899999998 Q sequence1 68 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184) Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184) .+...+..+...+|++++|+|+.+.. ......+...+.. ...|+++++||+|+.. T Consensus 93 ~~~~~~~~~~~~~d~~ilVvd~~~~~--~~~t~~~l~~~~~--~~~p~ivvinK~D~~~ 147 (364) T 5YT0_A 93 LFSNLRRRGGSVADFAILVVDIMEGF--KPQTYEALELLKE--RRVPFLIAANKIDRIP 147 (364) T ss_dssp HHHTTBCCC-BSCSEEEEEEETTTCC--CHHHHHHHHHHHH--HTCCEEEEEECGGGST T ss_pred HHHHHHHHHHhhCCEEEEEEecccCC--cHHHHHHHHHHHH--cCCCEEEEEEchhcCC Confidence 88777777888999999999998632 1111122222222 2578899999999865
##### No 355 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4N3N_A Eukaryotic translation initiation factor 5B-like; Translation initiation, GTPase, eIF5B/IF2, Subunit; 2.752A {Chaetomium thermophilum var. thermophilum} Probab=99.34 E-value=5.8e-16 Score=122.83 Aligned_cols=118 Identities=19% Similarity=0.149 Sum_probs=72.8 Template_Neff=8.700 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY---VADI--------------EVDGKQVELALWDTAGLE 67 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~---~~~~--------------~~~~~~~~~~i~D~~g~~ 67 (184) ..+.++|+++|..++|||||++++..........+...... .... ........+.+||+||++ T Consensus 7 ~~r~p~V~VlG~v~~GKTTLl~~l~~~~~~~~~~~git~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPGh~ 86 (603) T 4N3N_A 7 NLRSPICCILGHVDTGKTKLLDKIRQTNVQEGEAGGITQQIGATYFPVEAIKQKTAVVNKDGKFEFKVPGLLIIDTPGHE 86 (603) T ss_dssp CCCCCEEEEEC----CHHHHHHHHHCCCCC---CCCCEEETTEEEEEHHHHHHHHGGGCSSCCSCCCCSEEEEECCSSSG T ss_pred CCCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcCCcccccceeEEeehHHhhhceeeecCCCCeeccCCcEEEEeCCCCH Confidence 45678899999999999999999987654322111111100 0000 011112458899999999 Q sequence1 68 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184) Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184) .+...+......+|++++|+|+.+....+ ..+. ...+.. ...|+++++||+|+.. T Consensus 87 ~f~~~~~~~~~~aDiaIlVvd~~~g~~~q-t~e~-l~~l~~--~~~p~IvviNK~D~~~ 141 (603) T 4N3N_A 87 SFSNLRSRGSSLCNIAILVVDIMHGLEPQ-TIES-LRLLRE--RKTPFVVALNKIDRLY 141 (603) T ss_dssp GGCSCGGGGGGTCSEEEEEEETTTCCCHH-HHHH-HHHHHH--HTCCEEEEEECGGGST T ss_pred HHHHHHHhhhccCCEEEEEEeCCCCCCHH-HHHH-HHHHHH--hCCCEEEEEeCCCCCc Confidence 99888888889999999999998643221 1122 222222 2578999999999875
##### No 356 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3GEH_A tRNA modification GTPase mnmE (E.C.3.6.-.-); G protein, GTPase, tRNA modification; HET: FON, GDP; 3.2A {Nostoc sp. PCC} Probab=99.34 E-value=6.2e-16 Score=119.15 Aligned_cols=150 Identities=21% Similarity=0.238 Sum_probs=86.9 Template_Neff=9.000 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVP-TVFENYVADIEVDGKQVELALWDTAGLEDYDR--------LRPLS 76 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~ 76 (184) ..++|+++|.+++|||||++++........ ..+ ++.......+.. ....+.+||+||...... ....+ T Consensus 223 ~~~~v~ivG~~~aGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~v~l~DtpG~~~~~~~~e~~~~~~~~~~ 300 (462) T 3GEH_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVV--GGIPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462) T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEE--TTEEEEECC--------------------CC T ss_pred cCceEEEECCCCCChHHHHHHHhcCCceeecCCCCCccceEEEEEEE--CCeeEEEEeCCCCCCCcHHHHHHHHHHHHHH Confidence 468999999999999999999987654211 111 111111111121 245688999999754321 12234 Q sequence1 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184) Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184) +..+|++++|+|......... ..+...+ ...|+++|+||+|+........ . .. .... T Consensus 301 ~~~ad~il~vid~~~~~~~~~--~~~~~~~----~~~~iivv~nK~Dl~~~~~~~~------------~---~~--~~~~ 357 (462) T 3GEH_A 301 ANTADLVLLTIDAATGWTTGD--QEIYEQV----KHRPLILVMNKIDLVEKQLITS------------L---EY--PENI 357 (462) T ss_dssp CCSCSEEEEEEETTTCSCHHH--HHHHHHH----TTSCEEEEEECTTSSCGGGSTT------------C---CC--CTTC T ss_pred HccCCEEEEEEeCCCCCCccc--HHHHHHh----cCCCEEEEEeCCchhhHHHHhc------------C---cC--Cccc Confidence 577899999999887433211 1121111 3578999999999976432110 0 00 0112 Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) ..++.+|++++.|+.+++..+.+.+ T Consensus 358 ~~~~~iSa~~g~gi~~l~~~i~~~l 382 (462) T 3GEH_A 358 TQIVHTAAAQKQGIDSLETAILEIV 382 (462) T ss_dssp CCEEEEBTTTTBSHHHHHHHHHHHH T ss_pred CcEEEeecCCCCCHHHHHHHHHHHH Confidence 5788999999999999888776654
##### No 357 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4B3X_A TRANSLATION INITIATION FACTOR IF-2; TRANSLATION, INITIATION, GTP HYDROLYSIS MECHANISM; HET: GOL; 1.95A {THERMUS THERMOPHILUS} Probab=99.34 E-value=6.9e-16 Score=115.41 Aligned_cols=163 Identities=23% Similarity=0.221 Sum_probs=96.8 Template_Neff=10.100 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) ...++|+++|..++|||||++++..........+.... .............+.+||+||+..+...+..+...+|++++ T Consensus 71 ~~~~~i~i~G~~~~GKStL~~~l~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~il 149 (363) T 4B3X_A 71 RRPPVVVIMGHVDHGKTTLLDYLRKSRIAEKEGGGITQ-HVGAFEVKTPQGTVVFIDTPGHEAFTTIRQRGAKVADIAVI 149 (363) T ss_dssp BCCCEEEEEECTTTTHHHHHHHHHHHHHSSCCSSCCCC-CCSEEEEEETTEEEEEECCSSSSSSSTTCCCCSCCCSEEEE T ss_pred cCCCEEEEECCCCCChhHHHHHHcCCCCCCCCCCCcee-EEEEEEEEcCCceEEEEECCCCcchHHHHHhhcccCCEEEE Confidence 35678999999999999999998865433221111111 11111122223467899999998887777777888999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184) |+|.++.. ......+...+.. ...|+++++||+|+...... ........ .............++++|+. T Consensus 150 vvd~~~~~--~~~~~~~l~~~~~--~~~piivv~nK~D~~~~~~~-~~~~~l~~------~~~~~~~~~~~~~~v~vSa~ 218 (363) T 4B3X_A 150 VIAADDGI--MPQTEEAIAHAKA--AGAKLIFAINKIDLPQADPE-KVKRQLME------RGFVPEEYGGDAIVIPISAK 218 (363) T ss_dssp EEETTTCS--CHHHHHHHHHHHH--TTCEEEEEEECTTSTTCCHH-HHHHHHHH------TTCCBGGGTSSBEEEECCTT T ss_pred EEECCCCC--cHHHHHHHHHHHH--hCCCEEEEEECCCCCCCCHH-HHHHHHHH------cCCChHHhCCCccEEECcCC Confidence 99987532 1111122222222 25789999999998653211 00000000 00000001112568899999 Q sequence1 166 TKDGVREVFEMATRA 180 (184) Q Consensus 166 ~~~~i~~~~~~~~~~ 180 (184) ++.|+.++++++... T Consensus 219 ~g~~i~~l~~~l~~~ 233 (363) T 4B3X_A 219 TGQGVQDLLEMILLL 233 (363) T ss_dssp TCTTHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHH Confidence 999999988776543
##### No 358 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4N3G_A Eukaryotic translation initiation factor 5B-like; Translation initiation, GTPase, eIF5B/IF2, Subunit; HET: LAC; 3.203A {Chaetomium thermophilum var. thermophilum} Probab=99.33 E-value=8.4e-16 Score=121.97 Aligned_cols=119 Identities=18% Similarity=0.150 Sum_probs=0.0 Template_Neff=8.800 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY---VADI--------------EVDGKQVELALWDTAGL 66 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~---~~~~--------------~~~~~~~~~~i~D~~g~ 66 (184) ...+.++|+++|..++|||||++++..........+...... .... ........+.+||+||+ T Consensus 6 ~~~r~~~I~vlG~~~~GKTtLl~~l~~~~~~~~~~~git~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPGh 85 (603) T 4N3G_A 6 DNLRSPICCILGHVDTGKTKLLDKIRQTNVQEGEAGGITQQIGATYFPVEAIKQKTAVVNKDGKFEFKVPGLLIIDTPGH 85 (603) T ss_dssp -------------------------------------------------------------------------------- T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCCccceeeEEeeHHHHhhceeeecCCCCeeccCCeEEEEECCCC Confidence 345678899999999999999999987654322111111000 0000 01111245889999999 Q sequence1 67 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184) Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184) +.+...+......+|++++|+|+++....+ ..+.+ ..+.. ...|+++++||+|+.. T Consensus 86 ~~f~~~~~~~~~~aDiaIlVVd~~~g~~~q-t~e~i-~~l~~--~~~p~IvviNK~D~~~ 141 (603) T 4N3G_A 86 ESFSNLRSRGSSLCNIAILVVDIMHGLEPQ-TIESL-RLLRE--RKTPFVVALNKIDRLY 141 (603) T ss_dssp ------------------------------------------------------------ T ss_pred HHHHHHHHHchhcCCEEEEEEecCCCCCHH-HHHHH-HHHHH--cCCCEEEEEeChhccc Confidence 999888888889999999999998643221 11222 22222 2578999999999875
##### No 359 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6EG8_I Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit; G protein Heterotrimer GDP GPCR; HET: GDP; 2.8A {Homo sapiens} Probab=99.32 E-value=9.4e-16 Score=115.49 Aligned_cols=127 Identities=16% Similarity=0.183 Sum_probs=78.5 Template_Neff=9.400 Q sequence1 56 VELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDS----------PDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDL 124 (184) Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~-~~~~~~vv~nK~D~ 124 (184) +.+.+||++|+..+...|..++..++++++|+|+++ ..++......+........ ...|+++|+||.|+ T Consensus 204 ~~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~dls~y~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~nK~Dl 283 (381) T 6EG8_I 204 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 283 (381) T ss_dssp EEEEEEEECSSCCSSCGGGGGGTTCSEEEEEEETTCTTCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCCEEEEEECHHH T ss_pred eEEEEEECCCCcchHHHHHHHhcCCCEEEEEEEcccccccccCCCCCchHHHHHHHHHHHHcCHhHcCCCEEEEEeCchH Confidence 567799999998888888888899999999999987 4445544444444433221 26889999999999 Q sequence1 125 RNDEHT--RRELAKMKQEPVK----------------PEEGRDM-----AN-------RIGAFGYMECSAKTKDGVREVF 174 (184) Q Consensus 125 ~~~~~~--~~~~~~~~~~~~~----------------~~~~~~~-----~~-------~~~~~~~~~~s~~~~~~i~~~~ 174 (184) ...... ...+......... ...+..+ .. ....+.++++||.++.++.++| T Consensus 284 ~~~k~~~~~~~~~~~f~~y~~~~~~~~~~~~~~~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f 363 (381) T 6EG8_I 284 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF 363 (381) T ss_dssp HHHHHHHCSSCHHHHCGGGSSCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHTTSCTTSSCEEEEECCTTCHHHHHHHH T ss_pred HHHHHHcCCCCHHHhCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCccCCeEEEEEEecCChHHHHHHH Confidence 764321 0000000000000 0001111 00 0112457799999999999999 Q sequence1 175 EMATRAAL 182 (184) Q Consensus 175 ~~~~~~~~ 182 (184) ..+.+.+. T Consensus 364 ~~i~~~i~ 371 (381) T 6EG8_I 364 NDCRDIIQ 371 (381) T ss_dssp HHTHHHHH T ss_pred HHHHHHHH Confidence 88877553
##### No 360 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3TR5_A Peptide chain release factor 3; Protein synthesis, TRANSLATION; HET: MSE, GDP; 2.11A {Coxiella burnetii} Probab=99.32 E-value=1e-15 Score=119.77 Aligned_cols=118 Identities=19% Similarity=0.131 Sum_probs=75.8 Template_Neff=9.300 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT----------V----------F-ENYVADIEVDGKQVELALWDT 63 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t----------~----------~-~~~~~~~~~~~~~~~~~i~D~ 63 (184) .....+|+++|.+++|||||+++|..........+. . . ...............+.+||+ T Consensus 10 ~~~~~~i~iiG~~~~GKTtL~~~Ll~~~~~~~~~~~v~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDt 89 (528) T 3TR5_A 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDT 89 (528) T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECC T ss_pred hhhCeEEEEEcCCCCCHHHHHHHHhcccCCccccccccCCCCcceeecccchHHHHhCCeeeceeeEeeeCCcEEEEEEC Confidence 356789999999999999999999753221100000 0 0 000001111222457889999 Q sequence1 64 AGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184) Q Consensus 64 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184) ||+..+...+...+..+|++++|+|+.+. +......+...... ...|+++++||+|... T Consensus 90 pG~~df~~~~~~~l~~~D~~IlViD~~~g--~~~~t~~l~~~~~~--~~~piivviNK~D~~~ 148 (528) T 3TR5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKG--VEPRTIKLMEVCRL--RHTPIMTFINKMDRDT 148 (528) T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTC--SCHHHHHHHHHHHT--TTCCEEEEEECTTSCC T ss_pred CCCCCcHHHHHHHHHhCCEEEEEEECCCC--CcHHHHHHHHHHHH--cCCCEEEEEeCCCCCC Confidence 99988877777788899999999999872 22222222222222 3578999999999964
##### No 361 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3PEN_A Translation initiation factor 2 subunit; RNA, Met, Archaeal Proteins, Binding; HET: 5GP, GDP; 2.3005A {Sulfolobus solfataricus} Probab=99.32 E-value=1.1e-15 Score=115.53 Aligned_cols=168 Identities=16% Similarity=0.073 Sum_probs=99.7 Template_Neff=10.800 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP--TV-FEN--------YVA-----D---IEVDGKQVELALWDT 63 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~--t~-~~~--------~~~-----~---~~~~~~~~~~~i~D~ 63 (184) +...+..+|+++|..++|||||+++|........... .. ... ... . .........+.+||+ T Consensus 3 ~~~~~~~~I~v~G~~~~GKStLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDt 82 (403) T 3PEN_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403) T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHhccccccccCCceeeEeEecCCCCCceeecCcccccCCCCCCccceeEEEEEeC Confidence 4557789999999999999999999986432211000 00 000 000 0 000111246899999 Q sequence1 64 AGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVK 143 (184) Q Consensus 64 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~ 143 (184) ||+..+...+......+|++++|+|..+........+.+. ..... ...|+++++||+|+...........+... T Consensus 83 pG~~~~~~~~~~~~~~~d~~ilvid~~~~~~~~~~~~~l~-~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~i~~---- 156 (403) T 3PEN_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFV-ALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQ---- 156 (403) T ss_dssp CCSGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHH-HHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHH---- T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEeCCCCCCChhhHHHHH-HHHHh-CCCEEEEEEEcccCCCHHHHHHHHHHHHH---- Confidence 9998877667777788999999999887543333322222 22211 24689999999998764321111111000 Q sequence1 144 PEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRA 180 (184) Q Consensus 144 ~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184) .... .......++++|+.++.++.++++.+... T Consensus 157 --~~~~--~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 189 (403) T 3PEN_A 157 --FTKG--TWAENVPIIPVSALHKINIDSLIEGIEEY 189 (403) T ss_dssp --HHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHH T ss_pred --HHcC--CCccCCCEEEcccccccCHHHHHHHHHHH Confidence 0000 01122578899999999998888776543
##### No 362 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4N3S_A Domains1-3; Translation initiation, GTPase, eIF5B/IF2, Subunit; HET: EDO, GOL; 1.832A {Saccharomyces cerevisiae} Probab=99.31 E-value=1.2e-15 Score=117.50 Aligned_cols=118 Identities=17% Similarity=0.110 Sum_probs=68.1 Template_Neff=10.000 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEV----------------DGKQVELALWDTAGLE 67 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~----------------~~~~~~~~i~D~~g~~ 67 (184) ..+.++|+++|..++|||||++++..........+..... ....+.. ......+.+||+||++ T Consensus 7 ~~~~~~V~viG~~~~GKTtLl~~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtpG~~ 86 (457) T 4N3S_A 7 DLRSPICCILGHVDTGKTKLLDKIRQTNVQGGEAGGITQQIGATYFPIDAIKAKTKVMAEYEKQTFDVPGLLVIDTPGHE 86 (457) T ss_dssp CCCCCEEEEECC------CHHHHHTCCCC-----CCCEECSSEEEEEHHHHHHHHGGGGGTCCCCCCSSEEEEECCSSSG T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCccccceeEEeehhHHHHhHhhHHHhhhccCCCCcEEEEeCCCCH Confidence 4567899999999999999999997654322111100000 0000000 0112247799999999 Q sequence1 68 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184) Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184) .+...+..++..+|++++|+|+++....+ ..+ +...+.. ...|+++++||+|+.. T Consensus 87 ~~~~~~~~~~~~~D~iIlVvd~~~~~~~~-~~e-~l~~l~~--~~~p~ivvinK~D~~~ 141 (457) T 4N3S_A 87 SFSNLRSRGSSLCNIAILVIDIMHGLEQQ-TIE-SIKLLRD--RKAPFVVALNKIDRLY 141 (457) T ss_dssp GGCSCGGGHHHHCSEEEEEEETTTBCCHH-HHH-HHHHHHH--HTCCEEEEEECGGGST T ss_pred HHHHHHHHhhhcCCEEEEEEeCCCCCCHH-HHH-HHHHHHH--cCCCEEEEEecccccc Confidence 88888888888999999999988632211 111 2222222 2678999999999875
##### No 363 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1XZP_A Probable tRNA modification GTPase trmE; GTP-binding, THF-binding, tRNA-modification, HYDROLASE; HET: SO4; 2.3A {Thermotoga maritima} SCOP: c.37.1.8, d.250.1.2, a.24.25.1 Probab=99.31 E-value=1.3e-15 Score=117.98 Aligned_cols=151 Identities=21% Similarity=0.236 Sum_probs=91.9 Template_Neff=8.600 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVP-TVFENYVADIEVDGKQVELALWDTAGLEDYD---------RLRPL 75 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~ 75 (184) ..++|+++|.+++|||||++.+.+...... ..+ ++......... .....+.+||+||..... ..... T Consensus 242 ~~~~V~ivG~~~aGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~e~~~~~~~~~ 319 (482) T 1XZP_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIV--IRGILFRIVDTAGVRSETNDLVERLGIERTLQ 319 (482) T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEE--ETTEEEEEEESSCCCSSCCTTCCCCCHHHHHH T ss_pred cCceEEEECCCCCCHHHHHHHHhcCCcceecCCCCceEeeEeeeeE--ECCeEEEEEeCCCCCCCChHHHHHHhHHHHHH Confidence 567999999999999999999987543211 111 11111111111 123567899999975432 12233 Q sequence1 76 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIG 155 (184) Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184) +...+|++++|+|.+...... . ..+...+ ...|+++|+||+|+........ .. . .+ . . T Consensus 320 ~~~~ad~vi~V~d~~~~~~~~-~-~~~l~~~----~~~p~iiV~NK~Dl~~~~~~~~-i~---------~---~l-~--~ 377 (482) T 1XZP_A 320 EIEKADIVLFVLDASSPLDEE-D-RKILERI----KNKRYLVVINKVDVVEKINEEE-IK---------N---KL-G--T 377 (482) T ss_dssp HHHHCSEEEEEEETTSCCCHH-H-HHHHHHH----TTSSEEEEEEECSSCCCCCHHH-HH---------H---HH-T--C T ss_pred HHHhCCEEEEEEeCCCCCCHH-H-HHHHHHH----cCCcEEEEEeCCCcCccCCHHH-HH---------H---Hh-C--C Confidence 556789999999998754322 1 1121111 2578999999999876321100 00 0 00 0 1 Q sequence1 156 AFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 156 ~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) ...++.+|++++.++.+++..+.+.+ T Consensus 378 ~~~~i~vSa~~g~gi~~L~~~i~~~~ 403 (482) T 1XZP_A 378 DRHMVKISALKGEGLEKLEESIYRET 403 (482) T ss_dssp STTEEEEEGGGTCCHHHHHHHHHHHT T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH Confidence 24678899999999999888776543
##### No 364 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2E87_A Hypothetical protein PH1320; GTP-binding, GTPase, Obg, bundle, GDP; HET: SO4, GDP; 2.35A {Pyrococcus horikoshii} Probab=99.30 E-value=1.6e-15 Score=113.33 Aligned_cols=156 Identities=20% Similarity=0.197 Sum_probs=89.0 Template_Neff=9.000 Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGLEDYD---------RLRPLSY 77 (184) Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~ 77 (184) ..+++++|.+|+|||||++.+........ ...++...... ........+.+||+||..... ....... T Consensus 167 ~~~v~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~T~~~~~~--~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~~~ 244 (357) T 2E87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVG--QFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357) T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEE--EEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCCCcEEEE--EeEcCCEEEEEEeCCCCCCCChhhhcHHHHHHHHHHH Confidence 45799999999999999999876432211 11111111111 122234568899999964211 0011111 Q sequence1 78 PDTDVILMCFSIDSPDSLE--NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIG 155 (184) Q Consensus 78 ~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184) ..+|++++|+|++...... .....+ ..+.......|+++|+||+|+....... . ...+....+ T Consensus 245 ~~ad~il~v~D~s~~~~~~~~~~~~~l-~~i~~~~~~~pvivV~nK~Dl~~~~~~~-~-------------~~~~~~~~~ 309 (357) T 2E87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLF-EEVHGEFKDLPFLVVINKIDVADEENIK-R-------------LEKFVKEKG 309 (357) T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHH-HHHHHHTTTSCEEEEECCTTTCCHHHHH-H-------------HHHHHHHTT T ss_pred HhcCEEEEEEeCCCcCCCCHHHHHHHH-HHHHHhhCCCCEEEEEeChHhCCHHHHH-H-------------HHHHHHHcC Confidence 2368899999988754321 111111 1111112357999999999997643210 0 001111112 Q sequence1 156 AFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 156 ~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) ..++.+|++++.|++++++++.+.+ T Consensus 310 -~~~~~iSa~~~~gi~~l~~~i~~~l 334 (357) T 2E87_A 310 -LNPIKISALKGTGIDLVKEEIIKTL 334 (357) T ss_dssp -CCCEECBTTTTBTHHHHHHHHHHHH T ss_pred -CCCEEeEcCCCcCHHHHHHHHHHHH Confidence 4678899999999999998877654
##### No 365 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5LMV_a 30S ribosomal protein S2, 30S; ribosome, translation, initiation factors, 30S; HET: G7M, 4SU, OMC, 5MU, PSU; 4.9A {Thermus thermophilus HB8} Probab=99.30 E-value=1.7e-15 Score=119.65 Aligned_cols=163 Identities=23% Similarity=0.241 Sum_probs=97.8 Template_Neff=9.200 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) .+.++|+++|..++|||||++++..........+..... ............+.+||+||++.+...+......+|++++ T Consensus 71 ~~~~~V~ivG~~~~GKSTLl~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~vIl 149 (571) T 5LMV_a 71 RRPPVVVIMGHVDHGKTTLLDYLRKSRIAEKEAGGITQH-VGAFEVKTPQGTVVFIDTPGHEAFTTIRQRGAKVADIAVI 149 (571) T ss_dssp CCCCCEEECCCTTSSHHHHHHHHHHHHHCCCCCCSCSCC-CCCEEEECSSCEEEECCSSTTTTSSCSCCSSCCCSSEEEE T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCccccccCCccee-eEEEEeecCCceEEEEeCCCchHHHHHHHHhhccCCEEEE Confidence 456789999999999999999998655432221111111 1111222223468899999998887777777888999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184) |++..+.. ..... .+...+.. ...|+++++||+|+...... ........ .............++++|++ T Consensus 150 Vvda~~g~-~~~t~-e~l~~~~~--~~~piiVviNK~D~~~~~~~-~~~~~l~~------~~~~~~~~~~~~~~v~vSa~ 218 (571) T 5LMV_a 150 VIAADDGI-MPQTE-EAIAHAKA--AGAKLIFAINKIDLPQADPE-KVKRQLME------RGFVPEEYGGDAIVIPISAK 218 (571) T ss_dssp EECSSSCS-CHHHH-HHHHHHHH--HCCCCEEEECCCSSTTCCHH-HHHHHHHH------HTCCBTTTSSSBEEEECBTT T ss_pred EEeCCCCC-CHHHH-HHHHHHHH--hCCCEEEEEECCCCCCCCHH-HHHHHHHH------cCCCchhcCCCccEEEeecC Confidence 99987632 11111 12222222 25789999999998653211 00000000 00000001112568889999 Q sequence1 166 TKDGVREVFEMATRA 180 (184) Q Consensus 166 ~~~~i~~~~~~~~~~ 180 (184) ++.|+.+++.++... T Consensus 219 ~g~gi~~l~~~i~~~ 233 (571) T 5LMV_a 219 TGQGVQDLLEMILLL 233 (571) T ss_dssp TTBSHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHH Confidence 999999888776543
##### No 366 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1G7S_A TRANSLATION INITIATION FACTOR IF2/EIF5B; translational GTPase, TRANSLATION; HET: GDP; 2.0A {Methanothermobacter thermautotrophicus} SCOP: b.43.3.1, c.37.1.8, c.20.1.1 Probab=99.29 E-value=1.8e-15 Score=119.92 Aligned_cols=117 Identities=16% Similarity=0.163 Sum_probs=75.5 Template_Neff=9.100 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY---V--------------ADIEVDGKQVELALWDTAGLED 68 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~---~--------------~~~~~~~~~~~~~i~D~~g~~~ 68 (184) .+.++|+++|..++|||||+.++..........+...... . ...........+.+||+||++. T Consensus 3 ~r~~~I~vlG~~~sGKTTLl~~L~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPGh~~ 82 (594) T 1G7S_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594) T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCccccccCCccceeeeeEEEehhhhccchhchhhccccccCCCcEEEEeCCCCHH Confidence 4578999999999999999999876543221111100000 0 0011111235688999999998 Q sequence1 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184) Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184) +...+......+|++++|+|+++. +......+...+.. ...|+++++||+|+.. T Consensus 83 f~~~~~~~~~~~D~~ilVvda~~g--~~~qt~e~l~~l~~--~~~p~IvviNK~D~~~ 136 (594) T 1G7S_A 83 FTTLRKRGGALADLAILIVDINEG--FKPQTQEALNILRM--YRTPFVVAANKIDRIH 136 (594) T ss_dssp CTTSBCSSSBSCSEEEEEEETTTC--CCHHHHHHHHHHHH--TTCCEEEEEECGGGST T ss_pred HHHHHHHHHhcCCEEEEEEeCCCC--CcHHHHHHHHHHHh--cCCCEEEEEecccccC Confidence 888888788899999999998763 22221222233322 2588999999999865
##### No 367 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5ADY_6 50S RIBOSOMAL PROTEIN L32, 50S; RIBOSOME, RIBOSOME RESCUE; HET: GNP; 4.5A {ESCHERICHIA COLI K-12} Probab=99.29 E-value=1.9e-15 Score=115.36 Aligned_cols=156 Identities=21% Similarity=0.196 Sum_probs=91.4 Template_Neff=8.700 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-TVFENYVADIEVDGKQVELALWDTAGLEDYDR--L------RPLSY 77 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--~------~~~~~ 77 (184) ..++|+++|.+++|||||++++........... ++.......+... ....+.+||++|...... . ....+ T Consensus 196 ~~~~V~ivG~~naGKSSLln~L~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~~f~~tl~~~ 274 (426) T 5ADY_6 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVA-DVGETVLADTVGFIRHLPHDLVAAFKATLQET 274 (426) T ss_dssp CCCBEEEECBTTSSHHHHHHHHHTCCCCCCSSSSCCCSCCEEECCCT-TTSCCEEECCCCBCTTCCHHHHHHHHHHHHHH T ss_pred CCCEEEEEccCCCchHHHHHHHhcCCccccccCCccccccceeEecC-CCCeEEEEeCCCchhcCCHHHHHHHHHHHHHH Confidence 457899999999999999999987543221111 1111111111111 123578999999643210 1 11224 Q sequence1 78 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184) Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184) ..+|++++|+|.+++...... ..+...+... ....|+++|+||+|+........ . ... ... T Consensus 275 ~~ad~il~ViD~s~~~~~~~~-~~~~~~l~~l~~~~~pii~V~NK~Dl~~~~~~~~------------~----~~~-~~~ 336 (426) T 5ADY_6 275 RQATLLLHVIDAADVRVQENI-EAVNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRI------------D----RDE-ENK 336 (426) T ss_dssp HHCSEEEEEECSSCTTHHHHH-HHHHHHHHHTSCTTSCEEEEECCHHHHTCCSCCC------------C----CSS-SSC T ss_pred HhCCEEEEEeecCChhHHHHH-HHHHHHHHHhcccCCCEEEEEEchhcCCCCcccc------------c----ccc-cCC Confidence 678999999999875322111 2222222211 12589999999999986432100 0 000 012 Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) ..++.+|++++.|+.+++..+...+ T Consensus 337 ~~~v~iSa~~g~gi~~L~~~i~~~l 361 (426) T 5ADY_6 337 PNRVWLSAQTGAGIPQLFQALTERL 361 (426) T ss_dssp CCCCBCCTTTTTTHHHHHHHHHHHS T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh Confidence 4577899999999999998877654
##### No 368 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2QTH_A GTP-binding protein; beta-alpha-barrels, GTP-binding, Nucleotide-binding, NUCLEOTIDE BINDING; HET: GDP, ACT; 2.0A {Sulfolobus solfataricus P2} Probab=99.29 E-value=2e-15 Score=112.99 Aligned_cols=163 Identities=16% Similarity=0.112 Sum_probs=90.3 Template_Neff=8.800 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-PTVFENYVADIEVDGKQVELALWDTAGLEDY--DRLRP------LS 76 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~~------~~ 76 (184) ...++|+++|..++|||||++++.......... .++.......+.. ....+.+||++|.... ...+. .. T Consensus 177 ~~~~~V~vvG~~~aGKSsLin~L~~~~~~~~~~~~~T~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~l~~~~~~tl~~ 254 (364) T 2QTH_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI--NNRKIMLVDTVGFIRGIPPQIVDAFFVTLSE 254 (364) T ss_dssp --CCEEEEEEBTTSSHHHHHHHHHTC-----------CCSCEEEEEE--TTEEEEEEECCCBCSSCCGGGHHHHHHHHHG T ss_pred cCCCEEEEEccCCCchHHHHHHHhCCCcccCCcccccCCCeeEEEEe--CCeEEEEEeCCcccCCCCHHHHHHHHHHHHH Confidence 345789999999999999999998654321111 1111111111111 2246789999996432 11111 12 Q sequence1 77 YPDTDVILMCFSIDSPDSL-ENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR- 153 (184) Q Consensus 77 ~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 153 (184) ...+|++++|+|.+.+... ......+...+... ....|+++|+||+|+....... .... ....... T Consensus 255 ~~~ad~il~VvD~s~~~~~~~~~~~~~~~~l~~l~~~~~piivV~NK~D~~~~~~~~-~~~~----------~~~~~~~~ 323 (364) T 2QTH_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYK-KLDL----------VEKLSKEL 323 (364) T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHH-HHHH----------HHHHHHHH T ss_pred HhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHHhCCCCCCEEEEEECHHhCChhHHH-HHHH----------HHHHHHHh Confidence 4568999999998875432 11112222222221 1258999999999998643210 0000 0000000 Q sequence1 154 -IGAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 154 -~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) .....++.+||+++.|+.++++++.+.+ T Consensus 324 ~~~~~~~v~iSa~~g~gi~~L~~~i~~~l 352 (364) T 2QTH_A 324 YSPIFDVIPISALKRTNLELLRDKIYQLA 352 (364) T ss_dssp CSCEEEEEECBTTTTBSHHHHHHHHHHHH T ss_pred cCCCCcEEEeeCCCCCCHHHHHHHHHHHH Confidence 0124578899999999999998887654
##### No 369 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5XKT_B Urease accessory protein UreG; SIMIBI Class GTPase, HYDROLASE; HET: GNP; 1.8A {Klebsiella pneumoniae subsp. rhinoscleromatis SB3432} Probab=99.28 E-value=2.3e-15 Score=102.54 Aligned_cols=86 Identities=15% Similarity=0.149 Sum_probs=55.3 Template_Neff=12.100 Q sequence1 78 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184) Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184) ..+|++++|+|.++..++.. ..... ...|+++|+||+|+...... ...... .. ........ T Consensus 113 ~~~d~~i~v~d~~~~~~~~~------~~~~~--~~~~i~~v~nk~D~~~~~~~--~~~~~~------~~---~~~~~~~~ 173 (200) T 5XKT_B 113 ELADLTIYVIDVAEGEKIPR------KGGPG--ITRSDFLVINKTDLAPYVGA--SLKVMA------SD---TQRMRGDR 173 (200) T ss_dssp TTCSEEEEEEEGGGCTTHHH------HCCHH--HHHSSEEEEECGGGHHHHTC--CHHHHH------HH---HHHHHTTS T ss_pred hhCCceEEEEECCCCccccC------CCCCC--CccceEEEEEchhcchhccc--cHHHHH------HH---HHHhcCCC Confidence 45789999999987654433 11111 25899999999999865321 111000 00 01111236 Q sequence1 158 GYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) .++++|+.++.|+.+++.++.+.+. T Consensus 174 ~~~~~Sa~~~~~~~~l~~~l~~~~~ 198 (200) T 5XKT_B 174 PWTFTNLKQGDGLSTIIAFLEDKGM 198 (200) T ss_dssp CEEECBTTTTBTHHHHHHHHHHHTT T ss_pred CeEEcccCCCCcHHHHHHHHHHccc Confidence 7899999999999999999887664
##### No 370 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5UCV_A Probable GTP-binding protein EngB; SSGCID, GDP, YsxC, engB, ribosome; HET: GOL, GDP; 1.8A {Neisseria gonorrhoeae (strain NCCP11945)} Probab=99.28 E-value=2.7e-15 Score=104.68 Aligned_cols=163 Identities=11% Similarity=0.032 Sum_probs=86.6 Template_Neff=9.400 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLEDY------DRLRP---- 74 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~------~~~~~---- 74 (184) ...++|+++|.+++|||||++.+..........+.. .......+... ....+||+||.... +..+. T Consensus 29 ~~~~~I~vvG~~~~GKSsll~~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~lvDt~G~~~~~~~~~~~~~~~~~~~ 105 (217) T 5UCV_A 29 DTPLEIAFVGRSNAGKSSAINTLTNHVRLAYVSKTPGRTQHINFFELQ---NGNFMVDLPGYGYAQVPEAVRAHWVNLLG 105 (217) T ss_dssp CCSSEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEECT---TSCEEEECCCBCCTTSCHHHHHHHHHHHH T ss_pred CCCcEEEEEeCCCCCHHHHHHHHhCCccceecCCCCCcceeeeEEEec---CCEEEEECCCCCcccCCHHHHHHHHHHHH Confidence 456789999999999999999998753211000000 00001111111 13468999996321 11121 Q sequence1 75 LSYP---DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA 151 (184) Q Consensus 75 ~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (184) .+.. .++++++++|..... ......+...+.. ...|+++|+||+|+.............. ....... T Consensus 106 ~~~~~~~~~~~iv~vid~~~~~--~~~~~~~l~~~~~--~~~pviiV~nK~D~~~~~~~~~~~~~~~------~~~~~~~ 175 (217) T 5UCV_A 106 DYLRHRKQLIGLVLIMDARHPL--KELDIRMLDFFHT--TGRPVHILLSKADKLSKNEQIKTLSQVK------KLLKPYS 175 (217) T ss_dssp HHHHHCTTEEEEEEEEETTSCC--CHHHHHHHHHHHT--TCCCEEEEEECGGGSCHHHHHHHHHHHH------HHHGGGG T ss_pred HHHHhcCCeeEEEEEecCCCCC--CHHHHHHHHHHHH--hCCCEEEEEeChhhCCHHHHHHHHHHHH------HHHHhcc Confidence 1111 367888888877542 1111112222221 3588999999999986432211111000 0000000 Q sequence1 152 NRIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 152 ~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ....+.++.+|+.++.|+.+++.++...+. T Consensus 176 -~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 205 (217) T 5UCV_A 176 -DRQNISVQLFSSLKKQGIDEANRTVGSWFD 205 (217) T ss_dssp -GTSCEEEEECBTTTTBSHHHHHHHHHHHHH T ss_pred -ccCCCcEEEeeCCCcCCHHHHHHHHHHHhh Confidence 112367899999999999999887766543
##### No 371 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4W7G_A Dynein Light Intermediate Chain; molecular motor, G protein, intracellular; 2.1A {Chaetomium thermophilum} Probab=99.27 E-value=2.9e-15 Score=116.92 Aligned_cols=172 Identities=8% Similarity=0.088 Sum_probs=103.0 Template_Neff=7.100 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPE---------VYVPTVFENYVA-DIEVD---GKQVELALWDTA-GLEDYD 70 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~---------~~~~t~~~~~~~-~~~~~---~~~~~~~i~D~~-g~~~~~ 70 (184) .....+|+|+|..++|||+|+++|....... ...++....+.. .+... .....+.+|+++ |...+. T Consensus 49 ~~~~k~IlVLG~~~sGKSsLl~~L~~~~~~~~~~~~~~~~~~~~t~al~Y~~~dv~d~~~ed~~arl~iw~l~~g~~~f~ 128 (552) T 4W7G_A 49 RLPEKNIILLGGTVDSQREFFEALSSNDRRTLDRSSSRSPPVANSFALGYTYYDVLDADHEDTLARISIYTLTDPSPAFA 128 (552) T ss_dssp CCCEEEEEEEECCHHHHHHHHHHHHSTTBC---------------CCCEEEEEEEECTTSCSEEEEEEEEEECSCCHHHH T ss_pred CCCCeEEEEECCCCCCHHHHHHHHcCCCchhcCcccCCCCCCCCceeeeEEEEEEecCCCCCcceEEEEEEcCCCCHHHH Confidence 3456789999999999999999998765321 111111111111 11111 134688999995 766777 Q sequence1 71 RLRPLSYPD----TDVILMCFSIDSPDSLENIPEKWTPEVKHFC------------------------------------ 110 (184) Q Consensus 71 ~~~~~~~~~----~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------------------------------ 110 (184) .++..++.. .+++++|+|+..+.++......|...+.... T Consensus 129 ~LL~~~l~~~si~~t~vvIvlD~s~P~s~~~~L~~Wl~~L~~~~~~l~~e~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 208 (552) T 4W7G_A 129 SLLQPILTPDSIPNTLIVILLDWSQPWKWMRQLREWILLLRTVLVSLSHECKATMEEVMLSWRDRGRGGGINLDGSMTAP 208 (552) T ss_dssp GGGGGGCCTTTGGGEEEEEEEETTCGGGHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTSTTSSSSBCTTSCBC-- T ss_pred HHhhHhcCcccCCCeEEEEEEcCCChHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC Confidence 677666665 7899999999998877544445544433211 Q sequence1 111 ------------------PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 172 (184) Q Consensus 111 ------------------~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 172 (184) ...|++||+||+|+............. ......+....++..++ ..++++|++.+.++.. T Consensus 209 ~~~~~~~~pl~~g~~~~~lgiPliVV~~KsD~~~~le~~~~~~ee-~~d~I~q~LR~i~lk~G-AsLiytS~~~~~nl~~ 286 (552) T 4W7G_A 209 TADAEPALPLGPGEWEDGLGLPLCVVCQNAEKMEYLEKTQGWKEE-EFDVVLQFMRTVLLKHG-ASLIYTTPSVPSQLPS 286 (552) T ss_dssp -------CCCCTTTTTTCCSSCEEEEEECTHHHHHHHHHSCCCHH-HHHHHHHHHHHHHHTTT-CEEEECCTTSCCSHHH T ss_pred CCCCCCCCCCCCCccccCCCCCEEEEEeCHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHcC-CEEEEECCCCcchHHH Confidence 258999999999998632111000000 00111222333444443 5788999999888887 Q sequence1 173 VFEMAT 178 (184) Q Consensus 173 ~~~~~~ 178 (184) ++..++ T Consensus 287 L~h~~l 292 (552) T 4W7G_A 287 LIHSSL 292 (552) T ss_dssp HHHHHT T ss_pred HHHHHh Confidence 765443
##### No 372 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4KJZ_B Translation initiation factor IF-2; Translation Initiation Factor/IF2 Superfamily, GTPase; HET: GDP; 2.8A {Thermus thermophilus} Probab=99.27 E-value=3e-15 Score=115.74 Aligned_cols=162 Identities=23% Similarity=0.245 Sum_probs=90.5 Template_Neff=9.700 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) ...+.|+++|..++|||||++++..........+..... ............+.+||+||++.+...+......+|++++ T Consensus 70 ~~~~~v~iiG~~~~GKStLl~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~D~vil 148 (473) T 4KJZ_B 70 RRPPVVVIMGHVDHGKTTLLDYLRKSRIAEKEAGGITQH-VGAFEVKTPQGTVVFIDTPGHEAFTTIRQRGAKVADIAVI 148 (473) T ss_dssp BCCCEEEEECCTTTTHHHHHHHHHTTTCC-------CCC-SSEEEEEETTEEEEEECCC-----CCHHHHHSCCCSEEEE T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhcCCCcchhcCCceee-EEEEEEEcCCCeEEEEECCCcHHHHHHHHHHhhcCCEEEE Confidence 456789999999999999999987654332211111111 1111122223468899999998877777777788999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184) |+|+.+... ... ..+...+.. ...|+++++||+|+...... ........ .............++++|++ T Consensus 149 Vvd~~~~~~-~~~-~e~l~~~~~--~~~piivviNK~D~~~~~~~-~~~~~l~~------~~~~~~~~~~~~~~v~iSa~ 217 (473) T 4KJZ_B 149 VIAADDGIM-PQT-EEAIAHAKA--AGAKLIFAINKIDLPQADPE-KVKRQLME------RGFVPEEYGGDAIVIPISAK 217 (473) T ss_dssp EEETTTCSC-HHH-HHHHHHHHH--TTCEEEEEEECCSSTTCCHH-HHHHHHHH------TTCCBGGGTCSBCEEEECTT T ss_pred EEecCCCCC-HHH-HHHHHHHHH--hCCCEEEEEecccCCCCCHH-HHHHHHHH------CCCCcHHhCCceEEEEeecC Confidence 999876321 111 112222221 25789999999998653211 00000000 00000000112568899999 Q sequence1 166 TKDGVREVFEMATR 179 (184) Q Consensus 166 ~~~~i~~~~~~~~~ 179 (184) ++.|+.+++.++.. T Consensus 218 ~g~gi~~l~~~l~~ 231 (473) T 4KJZ_B 218 TGQGVQDLLEMILL 231 (473) T ss_dssp TCTTHHHHHHHHHH T ss_pred CCCCHHHHHHHHHH Confidence 99999998877654
##### No 373 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4KJZ_C Translation initiation factor IF-2; Translation Initiation Factor/IF2 Superfamily, GTPase; HET: GDP; 2.8A {Thermus thermophilus} Probab=99.26 E-value=3.6e-15 Score=115.29 Aligned_cols=162 Identities=23% Similarity=0.236 Sum_probs=89.1 Template_Neff=9.700 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184) ...+.|+++|..++|||||++++..........+..... ............+.+||+||++.+...+......+|++++ T Consensus 70 ~~~~~v~iiG~~~~GKStLl~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~D~~il 148 (473) T 4KJZ_C 70 RRPPVVVIMGHVDHGKTTLLDYLRKSRIAEKEAGGITQH-VGAFEVKTPQGTVVFIDTPGHEAFTTIRQRGAKVADIAVI 148 (473) T ss_dssp BCCCEEECEECTTTTHHHHHHHHHHHHCC-------CCC-CSEEEEEETTEEEEEECCSSCCTTCSHHHHHSCCCSBCE- T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCCCCeeee-EEEEEEEeCCceEEEEECCCchhHHHHHHHHhccCCEEEE Confidence 456789999999999999999988654332211111111 1111112223468899999998887777777788999999 Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184) Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184) |+++.+... .... .+...+.. ...|+++++||+|+...... ........ .............++++|++ T Consensus 149 Vvd~~~~~~-~~~~-~~l~~~~~--~~~piivviNK~D~~~~~~~-~~~~~l~~------~~~~~~~~~~~~~~v~iSa~ 217 (473) T 4KJZ_C 149 VIAADDGIM-PQTE-EAIAHAKA--AGAKLIFAINKIDLPQADPE-KVKRQLME------RGFVPEEYGGDAIVIPISAK 217 (473) T ss_dssp EEETTTCSC-TTHH-HHHHC----------CEEEECTTSTTCCHH-HHHHHHHH------TTCCBGGGTCSB-CEEECTT T ss_pred EEeCCCCCc-HHHH-HHHHHHHH--hCCCEEEEEEcccCCCCCHH-HHHHHHHH------cCCChHHhCCCccEEEeecC Confidence 999876321 1111 11122211 25789999999998653211 00000000 00000000112568899999 Q sequence1 166 TKDGVREVFEMATR 179 (184) Q Consensus 166 ~~~~i~~~~~~~~~ 179 (184) ++.|+.+++.++.. T Consensus 218 ~g~gi~~l~~~l~~ 231 (473) T 4KJZ_C 218 TGQGVQDLLEMILL 231 (473) T ss_dssp TCTTHHHHHHHHHH T ss_pred CCCCHHHHHHHHHH Confidence 99999988877654
##### No 374 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3WBI_A Eukaryotic translation initiation factor 5B; flexible, eukaryotic translation initiation, eIF1A; 2.35A {Saccharomyces cerevisiae} Probab=99.26 E-value=3.9e-15 Score=118.27 Aligned_cols=118 Identities=17% Similarity=0.107 Sum_probs=60.7 Template_Neff=8.700 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIE----------------VDGKQVELALWDTAGLE 67 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~----------------~~~~~~~~~i~D~~g~~ 67 (184) ..+.++|+++|..++|||||++++..........+..... ....+. .......+.+||+||++ T Consensus 6 ~~r~~~V~VlG~~d~GKTtLl~~L~~~~~~~~e~~git~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iDtPGh~ 85 (606) T 3WBI_A 6 DLRSPICCILGHVDTGKTKLLDKIRQTNVQGGEAGGITQQIGATYFPIDAIKAKTKVMAEYEKQTFDVPGLLVIDTPGHE 85 (606) T ss_dssp CBCCCEEEEECCGGGTHHHHHHHHHCSEETTEECTTCEEETTEEEEEHHHHHHHHGGGGGTSCCCCCSSEEEEECC---- T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCCCCccccceeEEEechhhhhhhhHhhhhccccccCCcEEEEeCCCCH Confidence 3567899999999999999999997654322211111000 000000 01112347799999999 Q sequence1 68 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184) Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184) .+...+......+|++++|+|+.+....+ ..+. ...+.. ...|+++++||+|+.. T Consensus 86 ~f~~~~~~g~~~aDiaILVvd~~~g~~~q-t~e~-l~~l~~--~~~p~IVv~NKiD~~~ 140 (606) T 3WBI_A 86 SFSNLRSRGSSLCNIAILVIDIMHGLEQQ-TIES-IKLLRD--RKAPFVVALNKIDRLY 140 (606) T ss_dssp ----------CCCSEEEEEEETTTCCCHH-HHHH-HHHHTC--CEE---EEEECGGGST T ss_pred HHHhHHHHHhccCCEEEEEEeCCCCCCHH-HHHH-HHHHHH--hCCCEEEEEeCCCCCC Confidence 99888888889999999999998742221 1122 222222 2578999999999875
##### No 375 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2QTF_A GTP-binding protein; beta-alpha-barrels, GTP-binding, Nucleotide-binding, NUCLEOTIDE BINDING; HET: ACT; 2.0A {Sulfolobus solfataricus P2} Probab=99.25 E-value=4.3e-15 Score=111.26 Aligned_cols=163 Identities=16% Similarity=0.117 Sum_probs=90.4 Template_Neff=8.800 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-PTVFENYVADIEVDGKQVELALWDTAGLEDYD--RLRPL------S 76 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~------~ 76 (184) ...++|+++|.+++|||||++++.......... .++.......... ....+.+||++|..... ..+.. . T Consensus 177 ~~~~~V~vvG~~naGKStLin~L~~~~~~~~~~~~~T~~~~~~~~~~--~~~~~~l~Dt~G~~~~~p~~l~~~~~~tl~~ 254 (364) T 2QTF_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI--NNRKIMLVDTVGFIRGIPPQIVDAFFVTLSE 254 (364) T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEE--TTEEEEEEECCCBCSSCCGGGHHHHHHHHHG T ss_pred cCCCEEEEEecccccHHHHHHHHhCCCCCCcCCCCCCCCCeEEEEEe--CCcEEEEEcCCChhcCCCHHHHHHHHHHHHH Confidence 345789999999999999999998654321111 1111111111111 22467899999964321 11111 2 Q sequence1 77 YPDTDVILMCFSIDSPDSL-ENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI 154 (184) Q Consensus 77 ~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184) ...+|++++|+|.+.+... ......+...+... ....|+++|+||+|+....... .... ........ T Consensus 255 ~~~aD~il~ViD~s~~~~~~~~~~~~~~~~l~~l~~~~~piiiV~nK~D~~~~~~~~-~~~~----------~~~~~~~~ 323 (364) T 2QTF_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYK-KLDL----------VEKLSKEL 323 (364) T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHH-HHHH----------HHHHHHHH T ss_pred HhcCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCCCCCCEEEEEECHHhCCHHHHh-hHHH----------HHHHHHHh Confidence 4568999999998875422 11112222222221 2258999999999998643211 0000 00000000 Q sequence1 155 --GAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 155 --~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) ....++++|++++.|+.++++.+...+ T Consensus 324 ~~~~~~~v~iSa~~g~gi~~L~~~i~~~l 352 (364) T 2QTF_A 324 YSPIFDVIPISALKRTNLELLRDKIYQLA 352 (364) T ss_dssp CSCEEEEEECBTTTTBSHHHHHHHHHHHH T ss_pred CCCCCCEEEeeCCCCCCHHHHHHHHHHHh Confidence 124578899999999999998877654
##### No 376 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3P1J_D GTPase IMAP family member 2; immunity, structural genomics consortium, gtpase; HET: UNX; 2.58A {Homo sapiens} Probab=99.25 E-value=4.7e-15 Score=101.55 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=65.1 Template_Neff=12.200 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYD--------RL---R 73 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~---~ 73 (184) .+.++|+++|..|+|||+|++++..........+... ...............+.+||++|..... .+ + T Consensus 3 ~~~~~i~v~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~ 82 (209) T 3P1J_D 3 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 82 (209) T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHTSCCSCC-----CCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCcceeEEEEEEEEECCeEEEEEeCCCCCCCCCCHHHHHHHHHHHH Confidence 4568999999999999999999987654332211110 1111111122234568899999976432 11 1 Q sequence1 74 PLSYPDTDVILMCFSIDSPDSLE-NIPEKWTPEVKHFCPNVPIILVGNKKDLRND 127 (184) Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~ 127 (184) ......++++++|+++....... .....+...........|+++++||.|+... T Consensus 83 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~d~~~~ 137 (209) T 3P1J_D 83 LLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 137 (209) T ss_dssp HHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEEC------- T ss_pred HhcCCCCCEEEEEEEHhhCCHHHHHHHHHHHHHHCCCCCCCCEEEEEccccCCCh Confidence 22233458999999987544332 2222222222222246789999999998764
##### No 377 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3KXI_A GTP-binding protein (HflX); SsGBP, HflX, GTPase, Mg++ ion; HET: GDP; 2.65A {Sulfolobus solfataricus} Probab=99.25 E-value=5e-15 Score=110.93 Aligned_cols=163 Identities=16% Similarity=0.108 Sum_probs=91.2 Template_Neff=8.800 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-PTVFENYVADIEVDGKQVELALWDTAGLEDYD--RLRPL------S 76 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~------~ 76 (184) ...++|+++|.+++|||||++++.......... .++.......... ....+.+||++|..... ..+.. . T Consensus 177 ~~~~~V~vvG~~naGKStLin~L~~~~~~~~~~~~~T~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~l~~~~~~tl~~ 254 (364) T 3KXI_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI--NNRKIMLVDTVGFIRGIPPQIVDAFFVTLSE 254 (364) T ss_dssp CSSCEEEEECBTTSSHHHHHHHHTTCC------------CCEEEEEE--TTEEEEEEECCCBCSSCCGGGHHHHHHHHHG T ss_pred cCCCEEEEEecCCCchHHHHHHHhCCCccCCCcccccCCCeeEEEEe--CCeEEEEEcCCCccCCCCHHHHHHHHHHHHH Confidence 345789999999999999999988654321111 1111111111111 23467899999964321 11111 2 Q sequence1 77 YPDTDVILMCFSIDSPDSL-ENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR- 153 (184) Q Consensus 77 ~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 153 (184) ...+|++++|+|.+.+.+. ......+...+... ....|+++|+||+|+....... .... ...+... T Consensus 255 ~~~aD~il~ViD~s~~~~~~~~~~~~~~~~l~~l~~~~~piiiV~nK~D~~~~~~~~-~~~~----------~~~~~~~~ 323 (364) T 3KXI_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYK-KLDL----------VEKLSKEL 323 (364) T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHTTCCSCCEEEEEECTTSCCSCHHH-HHHH----------HHHHHHHH T ss_pred hhcCCEEEEEEECCCChhHHHHHHHHHHHHHHHhCccCCCEEEEEeCHHHCChhHHH-HHHH----------HHHHHHHh Confidence 4568999999998875432 11112222222221 2258999999999998643211 0000 0000000 Q sequence1 154 -IGAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 154 -~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) .....++++||+++.|+.++++.+...+ T Consensus 324 ~~~~~~~i~iSa~~g~gi~~L~~~i~~~l 352 (364) T 3KXI_A 324 YSPIFDVIPISALKRTNLELLRDKIYQLA 352 (364) T ss_dssp CSCEEEEEECCTTTTTTHHHHHHHHHHHH T ss_pred cCCCCeEEEeeCCCCCCHHHHHHHHHHHH Confidence 0124578899999999999998877654
##### No 378 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4RD4_A Translation initiation factor 2 subunit; Rossmann fold, TRANSLATION; HET: GNP; 1.3A {Sulfolobus solfataricus} Probab=99.24 E-value=6.2e-15 Score=111.95 Aligned_cols=168 Identities=15% Similarity=0.095 Sum_probs=98.6 Template_Neff=10.800 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVF--ENYVA-DI------------------------EVD 52 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~---~~t~~--~~~~~-~~------------------------~~~ 52 (184) +...+..+|+++|..++|||||++++++....... ..... ..+.. .. ... T Consensus 4 ~~~~~~~~I~v~G~~~~GKStLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (415) T 4RD4_A 4 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEP 83 (415) T ss_dssp CCCCCCEEEEEECSTTSSHHHHHHHHHSCCCCCSHHHHHHTSCCSCEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCC T ss_pred CcCCCCeEEEEEcCCCCCHHHHHHHHhCCCCcCCchHHhcCCeeEEeeeeeeeeecccCCCCcceecCcccccCCCCCCc Confidence 45677899999999999999999999764221110 00000 00000 00 000 Q sequence1 53 GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRR 132 (184) Q Consensus 53 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~ 132 (184) .....+.+||+||++.+...+......+|++++|+|..+........+.+.. +... ...|+++++||+|+........ T Consensus 84 ~~~~~i~l~D~pG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~~~~~~l~~-~~~~-~~~~~ivv~nK~D~~~~~~~~~ 161 (415) T 4RD4_A 84 KFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVA-LGII-GVKNLIIVQNKVDVVSKEEALS 161 (415) T ss_dssp EEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHH-HHHH-TCCCEEEEEECGGGSCHHHHHH T ss_pred ccceeEEEEeCCCCHHHHHHHHHHhhcCCEEEEEEECCCCCCchhHHHHHHH-HHHh-CCCEEEEEEecccCCCHHHHHH Confidence 1124688999999887766666677789999999998865323333222221 2111 2358999999999876432111 Q sequence1 133 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRA 180 (184) Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184) ...+... ..... ......++.+|+.++.++.++++++.+. T Consensus 162 ~~~~i~~------~~~~~--~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 201 (415) T 4RD4_A 162 QYRQIKQ------FTKGT--WAENVPIIPVSALHKINIDSLIEGIEEY 201 (415) T ss_dssp HHHHHHH------HHTTS--TTTTCCEEECBTTTTBSHHHHHHHHHHH T ss_pred HHHHHHH------HHhcC--CcccCCEEEccCCCccCHHHHHHHHHHH Confidence 1111000 00000 0112568889999999999888876554
##### No 379 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4RJL_A Translation initiation factor 2 subunit; gamma subunit, g-protein, translation, translation; HET: FMT, 7PG, GCP; 1.6401A {Sulfolobus solfataricus} Probab=99.24 E-value=6.2e-15 Score=111.95 Aligned_cols=168 Identities=15% Similarity=0.095 Sum_probs=98.6 Template_Neff=10.800 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVF--ENYVA-DI------------------------EVD 52 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~---~~t~~--~~~~~-~~------------------------~~~ 52 (184) +...+..+|+++|..++|||||++++++....... ..... ..+.. .. ... T Consensus 4 ~~~~~~~~I~v~G~~~~GKStLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (415) T 4RJL_A 4 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEP 83 (415) T ss_dssp CCCCCCEEEEEECSTTSSHHHHHHHHHSCCCCCSHHHHHHTSCCSCEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCC T ss_pred CcCCCCeEEEEEcCCCCCHHHHHHHHhCCCCcCCchHHhcCCeeEEeeeeeeeeecccCCCCcceecCcccccCCCCCCc Confidence 45677899999999999999999999764221110 00000 00000 00 000 Q sequence1 53 GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRR 132 (184) Q Consensus 53 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~ 132 (184) .....+.+||+||++.+...+......+|++++|+|..+........+.+.. +... ...|+++++||+|+........ T Consensus 84 ~~~~~i~l~D~pG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~~~~~~l~~-~~~~-~~~~~ivv~nK~D~~~~~~~~~ 161 (415) T 4RJL_A 84 KFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVA-LGII-GVKNLIIVQNKVDVVSKEEALS 161 (415) T ss_dssp EEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHH-HHHH-TCCCEEEEEECGGGSCHHHHHH T ss_pred ccceeEEEEeCCCCHHHHHHHHHHhhcCCEEEEEEECCCCCCchhHHHHHHH-HHHh-CCCEEEEEEecccCCCHHHHHH Confidence 1124688999999887766666677789999999998865323333222221 2111 2358999999999876432111 Q sequence1 133 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRA 180 (184) Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184) ...+... ..... ......++.+|+.++.++.++++++.+. T Consensus 162 ~~~~i~~------~~~~~--~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 201 (415) T 4RJL_A 162 QYRQIKQ------FTKGT--WAENVPIIPVSALHKINIDSLIEGIEEY 201 (415) T ss_dssp HHHHHHH------HHTTS--TTTTCCEEECBTTTTBSHHHHHHHHHHH T ss_pred HHHHHHH------HHhcC--CcccCCEEEccCCCccCHHHHHHHHHHH Confidence 1111000 00000 0112568889999999999888876554
##### No 380 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3L2O_B S-phase kinase-associated protein 1/F-box only; small G protein fold, Ubl; 2.8A {Homo sapiens} Probab=99.23 E-value=6.3e-15 Score=108.18 Aligned_cols=162 Identities=8% Similarity=-0.040 Sum_probs=99.7 Template_Neff=9.900 Q sequence1 7 IRKKLVIVGD--GACGKTCLLIVNSKDQFPEVYVPTVFENYV------ADIEVDGK-QVELALWDTA------------- 64 (184) Q Consensus 7 ~~~~i~i~G~--~~~GKtsli~~~~~~~~~~~~~~t~~~~~~------~~~~~~~~-~~~~~i~D~~------------- 64 (184) ...+++++|+ .++|| +++.++..... ..++...... ..+.+.-. ...+.+||++ T Consensus 100 ~~~ki~~~g~~l~~~gk-s~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~ 175 (312) T 3L2O_B 100 NEPRFAMFGPGLEELNT-SLVLSLMSSEE---LCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREE 175 (312) T ss_dssp CCCEEEEECTHHHHSSS-CHHHHHTTCGG---GCCEECCSTTTCSSSCCCEEEEETTTEEEEEEECSCCCC--------- T ss_pred CCCchhhcCCCccccCh-HHHHHHhcCCC---cccCCCCCCCccCcccccEEEEeCCCCeEEEEEEEeccHHHHHHhHHH Confidence 4568899999 99999 77777765433 1111111110 00111111 2678899998 Q sequence1 65 --------------------GLEDYDRLRPLSYPDTDVILMCFSIDSPDSL--ENIPEKWTPEVKH--FCPNVPIILVGN 120 (184) Q Consensus 65 --------------------g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~--~~~~~~~~vv~n 120 (184) |++.+...+..++..++++++|+|+++..++ ......+...+.. .....|+++++| T Consensus 176 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~vi~v~D~t~~~~~~~~~~~~~l~~~~~~~~~~~~~pivvv~n 255 (312) T 3L2O_B 176 HTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSC 255 (312) T ss_dssp ---------------------CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEE T ss_pred hhHHHhHhhccccCCCcCCCCcceeHHHHHHHHhhCCEEEEEEeccccccccchHHHHHHHHHhccccccCCCcEEEEEe Confidence 8888888888899999999999999987776 5554444444432 123689999999 Q sequence1 121 KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 121 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) |.|.............. .........+.++++|++++.|+.++|.++.+.+. T Consensus 256 k~~d~~~~~~~~~~~~~----------l~~~~~~~~~~~~~~Sa~~~~~v~e~~~~L~~~~~ 307 (312) T 3L2O_B 256 ISQGDVKRMPCFYLAHE----------LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312) T ss_dssp ESSTTSCBCCHHHHHHH----------TTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC T ss_pred cCCCCccCCCHHHHHHH----------hChhhcCCCeEEEECcCCCCccHHHHHHHHHHHHH Confidence 75543211100100000 00000011256889999999999999999988764
##### No 381 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5O8W_A Elongation factor 1-alpha, Elongation factor; PROTEIN-PROTEIN COMPLEX, TRANSLATION, COVALENT MODIFICATION; HET: GLN, MSE, PGE, MLZ, M3L; 1.67A {Saccharomyces cerevisiae} Probab=99.23 E-value=7.1e-15 Score=113.41 Aligned_cols=158 Identities=12% Similarity=0.068 Sum_probs=89.1 Template_Neff=10.200 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY------------------------V-------PTVFENYVADIEV 51 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~------------------------~-------~t~~~~~~~~~~~ 51 (184) +.....++|+++|..++|||||+++|+........ . ...... ...... T Consensus 2 ~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~-~~~~~~ 80 (466) T 5O8W_A 2 GKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITID-IALWKF 80 (466) T ss_dssp CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCS-CSCEEE T ss_pred CCCCCcEEEEEEcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCchHHHHHhcCCHHHHhcCceee-eeEEEE Confidence 45677899999999999999999998743110000 0 000000 000011 Q sequence1 52 DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDS------LENIPEKWTPEVKHFCPNVP-IILVGNKKDL 124 (184) Q Consensus 52 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~-~~vv~nK~D~ 124 (184) ......+.+||+||+..+...+..+...+|++++|+|...... .....+ +...+.. ...| +++++||+|+ T Consensus 81 ~~~~~~~~liD~PG~~~~~~~~~~~~~~~d~~ilVvd~~~~~~~~~~~~~~~~~~-~l~~~~~--~~~~~~ivvinK~D~ 157 (466) T 5O8W_A 81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAFT--LGVRQLIVAVNKMDS 157 (466) T ss_dssp ECSSEEEEEEECCCCTTHHHHHHHSSCCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHHH--TTCCEEEEEEECGGG T ss_pred ecCCeEEEEEECCCChHHHHHHHHHHccCCEEEEEEEcCCCccccccCCCChHHH-HHHHHHH--hCCCEEEEEEECccC Confidence 1123468899999998887777777789999999999876421 111111 1222221 1345 8999999998 Q sequence1 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRI----GAFGYMECSAKTKDGVRE 172 (184) Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~~i~~ 172 (184) ...... ...... .......... ....++++|+.++.++.+ T Consensus 158 ~~~~~~--~~~~~~------~~i~~~l~~~~~~~~~~~~i~iSa~~g~~i~~ 201 (466) T 5O8W_A 158 VKWDES--RFQEIV------KETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (466) T ss_dssp GTTCHH--HHHHHH------HHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB T ss_pred CCCCHH--HHHHHH------HHHHHHHHHhCCCcccCCEeeCCccCCccccc Confidence 742110 000000 0000111111 125688899999988854
##### No 382 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3J5Y_B Eukaryotic peptide chain release factor; Translation termination, eRF1, eRF3, tRNAleu; 9.7A {Oryctolagus cuniculus} Probab=99.23 E-value=7.3e-15 Score=112.07 Aligned_cols=162 Identities=15% Similarity=0.123 Sum_probs=91.3 Template_Neff=10.600 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT-----------------------------VFENY-VADIEVDGK 54 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t-----------------------------~~~~~-~~~~~~~~~ 54 (184) ..+..+|+++|..++|||||+++|............ ..... ......... T Consensus 3 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~ 82 (428) T 3J5Y_B 3 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 82 (428) T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHTTTSSCHHHHHHHHHHHHHTTCGGGTTGGGTCCSHHHHHHTSCSSCEEEEEECS T ss_pred CCCcEEEEEEeCCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCcchHHHHHHcCCHHHHHcCceEEEEEEEEEcC Confidence 356789999999999999999988743221110000 00000 000011122 Q sequence1 55 QVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD---SLE---NIPEKWTPEVKHFCPNVP-IILVGNKKDLRND 127 (184) Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~-~~vv~nK~D~~~~ 127 (184) ...+.+||+||++.+...+...+..+|++++|+|+.... ++. ...+. ..... ....| +++++||+|+... T Consensus 83 ~~~i~liD~pG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~e~~~~~~~~~~~~-l~~~~--~~~~~~iivv~nK~D~~~~ 159 (428) T 3J5Y_B 83 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREH-AMLAK--TAGVKHLIVLINKMDDPTV 159 (428) T ss_dssp SEEEEEEECCSSSSCHHHHHHHHHTCSEEEEEEECSTTHHHHHTSTTSSHHHH-HHHHH--HTTCCSEEEEEESCSSTTC T ss_pred CcEEEEEeCCCchhhHHHHHHHHccCCEEEEEEECCCCcccccccCCChhHHH-HHHHH--HhCCCEEEEEEECCCCCCC Confidence 356789999999888777777778899999999987642 111 11111 11111 12456 8999999998653 Q sequence1 128 EHTRRELAKMKQEPVKPEEGRDMANRI-----GAFGYMECSAKTKDGVREVFE 175 (184) Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~~~~~ 175 (184) ........... .....+.... ....++++|+.++.|+.+++. T Consensus 160 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~~i~~~~~ 206 (428) T 3J5Y_B 160 NWSIERYEECK------EKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKEQSD 206 (428) T ss_dssp SSCHHHHHHHH------HHHHHHHHHHHCCCSSSEEEEECCSSSCTTTSSCCS T ss_pred CCcHHHHHHHH------HHHHHHHHHcCCCCccCcEEEECCccccccCcCccc Confidence 21111111100 0011111111 125688999999999887753
##### No 383 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3P1J_C GTPase IMAP family member 2; immunity, structural genomics consortium, gtpase; HET: UNX; 2.58A {Homo sapiens} Probab=99.22 E-value=8e-15 Score=100.41 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=64.7 Template_Neff=12.200 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYD--------RL---R 73 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~---~ 73 (184) .+.++|+++|..|+|||+|++++..........+... ...............+.+||++|..... .+ + T Consensus 3 ~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~ 82 (209) T 3P1J_C 3 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 82 (209) T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHC---------------CCEEEEEEC--CEEEEEECCGGGGSSCCCHHHHHHHHHHH T ss_pred CcceEEEEEcCCCCCcchHHHHHccchhhccccCCCcccceeeEEEeEECCeEEEEEeCCCCCCcchhHHHHHHHHHHHH Confidence 4568999999999999999999987655432221111 1111111222234578899999976432 11 1 Q sequence1 74 PLSYPDTDVILMCFSIDSPDSLE-NIPEKWTPEVKHFCPNVPIILVGNKKDLRND 127 (184) Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~ 127 (184) ......++++++|+++.+..... .....+...........|+++++||.|+... T Consensus 83 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~~k~d~~~~ 137 (209) T 3P1J_C 83 LLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 137 (209) T ss_dssp HHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEEEC---CHH T ss_pred HhcCCCccEEEEEEecccCCHHHHHHHHHHHHHHCcccccCEEEEEEcchhcCCC Confidence 22223458999999987643332 2222222222222246789999999998764
##### No 384 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1F60_A ELONGATION FACTOR EEF1A/ELONGATION FACTOR EEF1BA; protein-protein complex, TRANSLATION; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1, b.44.1.1, c.37.1.8 Probab=99.22 E-value=8.3e-15 Score=112.82 Aligned_cols=120 Identities=13% Similarity=0.010 Sum_probs=73.4 Template_Neff=10.200 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV--------------Y----------V-------PTVFENYVADIEV 51 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~--------------~----------~-------~t~~~~~~~~~~~ 51 (184) +.....++|+++|..++|||||+++|+....... . . ...... ...... T Consensus 2 ~~~~~~~~I~v~G~~~sGKSTLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~t~~-~~~~~~ 80 (458) T 1F60_A 2 GKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITID-IALWKF 80 (458) T ss_dssp CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCS-CSCEEE T ss_pred CCCCCcEEEEEEcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCchHHHHHhcCCHHHHhcCccee-eeEEEE Confidence 3456789999999999999999999874311000 0 0 000000 000011 Q sequence1 52 DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDS------LENIPEKWTPEVKHFCPNVP-IILVGNKKDL 124 (184) Q Consensus 52 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~-~~vv~nK~D~ 124 (184) ......+.+||+||+..+...+..+...+|++++|+|+++... .....+ +...+.. ...| +++++||+|+ T Consensus 81 ~~~~~~~~l~DtPG~~~~~~~~~~~~~~~d~~ilVvd~~~~~~~~~~~~~~~~~~-~l~~~~~--~~~~~iivv~nK~D~ 157 (458) T 1F60_A 81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAFT--LGVRQLIVAVNKMDS 157 (458) T ss_dssp ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHHH--TTCCEEEEEEECGGG T ss_pred ecCCeEEEEEeCCCChHHHHHHHHHHccCCEEEEEEEcCCCchhcccCCCCchHH-HHHHHHH--hCCCEEEEEEECccC Confidence 1123468899999998887777777789999999999876421 111211 2222222 1344 8999999998 Q sequence1 125 RN 126 (184) Q Consensus 125 ~~ 126 (184) .. T Consensus 158 ~~ 159 (458) T 1F60_A 158 VK 159 (458) T ss_dssp GT T ss_pred CC Confidence 74
##### No 385 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1WXQ_A GTP-binding protein; GTP-binding protein, Structural Genomics, RIKEN; 2.6A {Pyrococcus horikoshii} SCOP: c.37.1.8, d.15.10.2 Probab=99.22 E-value=8.5e-15 Score=110.94 Aligned_cols=84 Identities=14% Similarity=0.148 Sum_probs=45.9 Template_Neff=9.500 Q sequence1 9 KKLVIVGDGACGKTCLLIVNSKDQFP-EVYVPTVFENYVA--------------------DIEVDG--KQVELALWDTAG 65 (184) Q Consensus 9 ~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~~t~~~~~~~--------------------~~~~~~--~~~~~~i~D~~g 65 (184) ++|+++|.+++|||||++++...... ..+..++...... .....+ ....+.+||+|| T Consensus 1 ~~i~ivG~~~~GKStl~n~l~~~~~~~~~~~~~t~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~D~pG 80 (397) T 1WXQ_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397) T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC- T ss_pred CeEEEECCCCCCHHHHHHHHhcCCcccccCCCceeeceEEEEeeeCCCcchhhCCCCCCCcceecCCceeecEEEEecCC Confidence 47899999999999999999865332 1111111111000 000111 235789999998 Q sequence1 66 -------LEDYDRLRPLSYPDTDVILMCFSIDSP 92 (184) Q Consensus 66 -------~~~~~~~~~~~~~~~~~~i~v~d~~~~ 92 (184) ...+...+...+..+|++++|+|+... T Consensus 81 l~~~~~~~~~~~~~~l~~~~~~d~il~Vvd~~~~ 114 (397) T 1WXQ_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397) T ss_dssp --------------CCCSSTTCSEEEEEEETTCC T ss_pred CCCChhhCCchHHHHHHHHHhCCEEEEEeccCCC Confidence 444444555567889999999998764
##### No 386 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6RA9_B Elongation Factor 1A2; Moonlighting protein, RNA binding protein; HET: GOL, SO4, GDP, POK, GPE, SEP; 2.7A {Oryctolagus cuniculus} Probab=99.21 E-value=9.4e-15 Score=112.58 Aligned_cols=160 Identities=11% Similarity=0.034 Sum_probs=88.8 Template_Neff=10.300 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY------------------------VPTV-----FENY-VADIEVD 52 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~------------------------~~t~-----~~~~-~~~~~~~ 52 (184) +...+..+|+++|..++|||||+++|+........ .... .... ....... T Consensus 2 ~~~~~~~~v~i~G~~~sGKSTLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~ 81 (461) T 6RA9_B 2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFE 81 (461) T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCSCCSSSHHHHHHHHHHTSSSCCCCCGGGEEE T ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCchHHHHHHccCHHHHhcCceeeeeEEEEE Confidence 45678899999999999999999999743110000 0000 0000 0000111 Q sequence1 53 GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDS------LENIPEKWTPEVKHFCPNVP-IILVGNKKDLR 125 (184) Q Consensus 53 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~-~~vv~nK~D~~ 125 (184) .....+.+||+||++.+...+..+...+|++++|+|+++... .....+ +...+.. ...| +++++||+|+. T Consensus 82 ~~~~~~~liD~pG~~~~~~~~~~~~~~~d~~ilvid~~~~~~~~~~~~~~~~~~-~l~~~~~--~~~~~iivvinK~D~~ 158 (461) T 6RA9_B 82 TTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTRE-HALLAYT--LGVKQLIVGVNKMDST 158 (461) T ss_dssp CSSEEEEEEECSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHTSTTCSHHH-HHHHHHH--TTCCCEEEEEECGGGS T ss_pred cCCeEEEEEeCCCChHHHHHHHHHHccCCEEEEEEEcCCCchhcccCCCchHHH-HHHHHHH--hCCCEEEEEEECcCCC Confidence 123468899999998887777777889999999999876421 111111 1111211 1345 89999999987 Q sequence1 126 NDEHTRRELAKMKQEPVKPEEGRDMANRI----GAFGYMECSAKTKDGVR 171 (184) Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~~i~ 171 (184) .............. ....+.... ....++++|+.++.|+. T Consensus 159 ~~~~~~~~~~~~~~------~l~~~l~~~~~~~~~~~~i~~Sa~~~~~i~ 202 (461) T 6RA9_B 159 EPAYSEKRYDEIVK------EVSAYIKKIGYNPATVPFVPISGWHGDNML 202 (461) T ss_dssp SSTTCHHHHHHHHH------HHHHHHHHHTCCTTSSCEEECCTTTCTTTS T ss_pred CCccCHHHHHHHHH------HHHHHHHHcCCChhcCcEEeCccccccccC Confidence 53211111111000 000011111 11567889999988886
##### No 387 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5OWV_D ATP-binding protein; dynamin, lipid remodelling, membrane tethering; 3.72A {Campylobacter jejuni} Probab=99.21 E-value=1.1e-14 Score=115.44 Aligned_cols=160 Identities=18% Similarity=0.140 Sum_probs=91.0 Template_Neff=7.500 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-PTVFENYV---A---------------------------------- 47 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~-~t~~~~~~---~---------------------------------- 47 (184) ...++|+|+|..|+|||||++++.+....+... +++..... . T Consensus 62 ~~~~~IaViG~~gAGKSTLIN~Llg~~~l~~~~~~~T~~~t~i~~g~~~~~~v~~~dg~~~~~~~e~l~~~~~~~~~~~~ 141 (614) T 5OWV_D 62 DKNVNIAIIGQFSSGKSSLLNLILGRDCLPTGVVPVTFKPTFLRYAKEYFLRVEFEDGSDIITNIEKLAFYTDQRNEVKQ 141 (614) T ss_dssp TSCCCEEEECCSSCSHHHHHHHHHSSCCC------CCCCCEEEEECSSCEEEEEETTSCEEEEEGGGHHHHHSCCSSSCC T ss_pred CCCcEEEEEeCCCCCHHHHHHHHhCCCCCCCCCcccccceeEEecCCceEEEEEEcCCCEEEeeHHHHHhhccccchhcc Confidence 456899999999999999999998765533211 11100000 0 Q sequence1 48 ----DIEVD-GKQVELALWDTAGLEDYDR---LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG 119 (184) Q Consensus 48 ----~~~~~-~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~ 119 (184) .+... .....+.+||+||...... .+..++..++++++|++++...+.... ..+...+.. ...|+++|+ T Consensus 142 ~~~i~i~~p~~~l~~i~ivDTPG~~~~~~~~~~~~~~l~~ad~iI~Vvd~~~~~~~~e~-~~l~~ll~~--~~~~iIiVl 218 (614) T 5OWV_D 142 AKSLHIFAPIPLLEKITLVDTPGLNANENDTLTTLDELKNIHGAIWLSLIDNAGKKSEE-DAIKANLEL--LGENSICVL 218 (614) T ss_dssp EEEEEEEESCTTCSSCCEEECCCCCSCSTHHHHHHHHSCCCCEEEEEECSCCCHHHHHH-HHHHHTTTT--STTSEEEEE T ss_pred ccEEEEEccchhcCCeEEEECCCCCCCCcccHHHHHHHHhcCeEEEEEEccCCCCccHH-HHHHHHHHH--HCCCEEEEE Confidence 00000 0012688999999876544 566777889999999887765433322 233333322 257789999 Q sequence1 120 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD--------GVREVFEMATR 179 (184) Q Consensus 120 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~--------~i~~~~~~~~~ 179 (184) ||.|.............. ...... ....++.+||+.+. |+.++++++.+ T Consensus 219 NK~D~~~~~e~~~v~~~i----------~~~l~~-~~~~ii~iSAk~~~~~~~~~~sgi~~L~~~L~~ 275 (614) T 5OWV_D 219 NQKDKLSAEELDNVLNYA----------KSVFLK-YFNELIAISCKEAKDEQSYEKSNFQSLLDFLTQ 275 (614) T ss_dssp CCGGGC---CHHHHHHHH----------HHHHHC-CSSSSCEEECCCCTTCSSCCSSCHHHHHHHHHH T ss_pred EChhcCCHHHHHHHHHHH----------HHHHHH-hccceEEEecCccccchhhhhcCHHHHHHHHHH Confidence 999997643211110000 000001 12456788888765 77777777765
##### No 388 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5OXF_C ATP-binding protein; dynamin, membrane remodelling, membrane fusion; HET: GDP; 3.94A {Campylobacter jejuni} Probab=99.21 E-value=1.1e-14 Score=115.44 Aligned_cols=160 Identities=18% Similarity=0.140 Sum_probs=91.5 Template_Neff=7.500 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-PTVFENYV---A---------------------------------- 47 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~-~t~~~~~~---~---------------------------------- 47 (184) ...++|+|+|..|+|||||++++.+....+... +++..... . T Consensus 62 ~~~~~IaViG~~gAGKSTLIN~Llg~~~l~~~~~~~T~~~t~i~~g~~~~~~v~~~dg~~~~~~~e~l~~~~~~~~~~~~ 141 (614) T 5OXF_C 62 DKNVNIAIIGQFSSGKSSLLNLILGRDCLPTGVVPVTFKPTFLRYAKEYFLRVEFEDGSDIITNIEKLAFYTDQRNEVKQ 141 (614) T ss_dssp TSCEEEEEECCSSCSHHHHHHHHHSSCCCC---CCCCCCCEEEEECSSCEEEEEETTSCEEEECGGGHHHHHSCCSSSCC T ss_pred CCCcEEEEEeCCCCCHHHHHHHHhCCCCCCCCCcccccceeEEecCCceEEEEEEcCCCEEEeeHHHHHhhccccchhcc Confidence 456899999999999999999998765533211 11100000 0 Q sequence1 48 ----DIEVD-GKQVELALWDTAGLEDYDR---LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG 119 (184) Q Consensus 48 ----~~~~~-~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~ 119 (184) .+... .....+.+||+||...... .+..++..++++++|++++...+.... ..+...+.. ...|+++|+ T Consensus 142 ~~~i~i~~p~~~l~~i~ivDTPG~~~~~~~~~~~~~~l~~ad~iI~Vvd~~~~~~~~e~-~~l~~ll~~--~~~~iIiVl 218 (614) T 5OXF_C 142 AKSLHIFAPIPLLEKITLVDTPGLNANENDTLTTLDELKNIHGAIWLSLIDNAGKKSEE-DAIKANLEL--LGENSICVL 218 (614) T ss_dssp EEEEEEEECCTTSSSEEEEECCCCCSCTTHHHHHHHHSCCCCEEEEEECSCCCHHHHHH-HHHHHTTTS--SCSSCEEEE T ss_pred ccEEEEEccchhcCCeEEEECCCCCCCCcccHHHHHHHHhcCeEEEEEEccCCCCccHH-HHHHHHHHH--HCCCEEEEE Confidence 00000 0012688999999876544 566777889999999887765433322 233333322 257789999 Q sequence1 120 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD--------GVREVFEMATR 179 (184) Q Consensus 120 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~--------~i~~~~~~~~~ 179 (184) ||.|.............. ...... ....++.+||+.+. |+.++++++.+ T Consensus 219 NK~D~~~~~e~~~v~~~i----------~~~l~~-~~~~ii~iSAk~~~~~~~~~~sgi~~L~~~L~~ 275 (614) T 5OXF_C 219 NQKDKLSAEELDNVLNYA----------KSVFLK-YFNELIAISCKEAKDEQSYEKSNFQSLLDFLTQ 275 (614) T ss_dssp CCGGGC---CHHHHHHHH----------HHHHHC-CSSCSCCEECCCCSSCSSCCSSCHHHHHHHHHH T ss_pred EChhcCCHHHHHHHHHHH----------HHHHHH-hccceEEEecCccccchhhhhcCHHHHHHHHHH Confidence 999997643211110000 000001 12456788888765 77777777765
##### No 389 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2XTO_A GTPASE IMAP FAMILY MEMBER 2; IMMUNE SYSTEM, G PROTEIN; HET: GDP; 2.8A {HOMO SAPIENS} Probab=99.21 E-value=1.1e-14 Score=102.15 Aligned_cols=120 Identities=15% Similarity=0.175 Sum_probs=69.4 Template_Neff=11.800 Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYD--------RLRPLSY- 77 (184) Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~- 77 (184) .++|+++|.+|+|||||++++.+........+... ...............+.+||+||..... .+...+. T Consensus 2 ~~~i~v~G~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~i~~~~~~ 81 (240) T 2XTO_A 2 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLL 81 (240) T ss_dssp CEEEEEESSTTSSHHHHHHHHHTSCCSCCCCTTSCCCCSCEEEEEEETTEEEEEEECCGGGGCCSCCTTHHHHHHHHHHH T ss_pred CeEEEEEcCCCCChHHHHHHHhccccccccCCCCccceeeEEEEEEECCEEEEEEECCCCCCCccchHHHHHHHHHHHHh Confidence 57899999999999999999987654322211111 1111111111234578899999976543 1222222 Q sequence1 78 --PDTDVILMCFSIDSPDSLE-NIPEKWTPEVKHFCPNVPIILVGNKKDLRND 127 (184) Q Consensus 78 --~~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~ 127 (184) ..++++++|++.+...... .....+...+.......++++++||.|+... T Consensus 82 ~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~~k~d~~~~ 134 (240) T 2XTO_A 82 SAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 134 (240) T ss_dssp HTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCTTGGGGEEEEEECGGGGSSC T ss_pred cCCCceEEEEEEEcccCCHHHHHHHHHHHHHHCcccccCEEEEEEehhhcCCC Confidence 3448999999987543222 2222222222222235788899999998764
##### No 390 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2WSM_A HYDROGENASE EXPRESSION/FORMATION PROTEIN (HYPB); METAL BINDING PROTEIN; 2.3A {ARCHAEOGLOBUS FULGIDUS} Probab=99.19 E-value=1.4e-14 Score=100.95 Aligned_cols=156 Identities=17% Similarity=0.069 Sum_probs=91.1 Template_Neff=11.000 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT--------VFENY-----VADIEV------------------DG 53 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t--------~~~~~-----~~~~~~------------------~~ 53 (184) .....+|+++|..|+|||||++++............ ..... ...... .. T Consensus 27 ~~~~~~i~i~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (221) T 2WSM_A 27 ESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKF 106 (221) T ss_dssp HHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGG T ss_pred hhCCEEEEEEcCCCCCHHHHHHHHHHHHcCCCeEEEEECCCCChHHHHHHHHcCCeEEEeccCCccccCHHHHHHHHHhh Confidence 356689999999999999999999875321000000 00000 000000 00 Q sequence1 54 KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRE 133 (184) Q Consensus 54 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~ 133 (184) ....+.+||++|...... ..+..+|++++|+|..+...+... +...+ ..+.++|+||.|+...... . T Consensus 107 ~~~~~~iid~~g~~~~~~---~~~~~~d~~v~v~d~~~~~~~~~~---~~~~~-----~~~~ivv~nK~D~~~~~~~--~ 173 (221) T 2WSM_A 107 SDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDVVEK---HPEIF-----RVADLIVINKVALAEAVGA--D 173 (221) T ss_dssp TTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTHHHH---CHHHH-----HTCSEEEEECGGGHHHHTC--C T ss_pred cCCCEEEEeCCCCccccc---chhcCCCeEEEEEECCCcchhHhh---CHHHH-----hhCCEEEEEChHhhchhch--h Confidence 134678899999753322 234677899999999986544322 11111 2455899999999764210 0 Q sequence1 134 LAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ..... .. .........++++|++++.|+++++.++...+. T Consensus 174 ~~~~~------~~---l~~~~~~~~~~~~s~~~~~~i~~l~~~~~~~~~ 213 (221) T 2WSM_A 174 VEKMK------AD---AKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221) T ss_dssp HHHHH------HH---HHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC T ss_pred HHHHH------HH---HHHHCCCCEEEEeecccCCCHHHHHHHHHHHHH Confidence 00000 00 000112257889999999999999999887764
##### No 391 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6BK7_B Adenosylhomocysteinase (E.C.3.3.1.1, 1.8.1.7); Structural Genomics, Center for Structural; 1.83A {Enterococcus faecalis (strain ATCC 700802 / V583)} Probab=99.19 E-value=1.4e-14 Score=109.71 Aligned_cols=120 Identities=17% Similarity=0.044 Sum_probs=76.2 Template_Neff=10.800 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV--PTV---FE-----------NY-VADIEVDGKQVELALWDTAGL 66 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~--~t~---~~-----------~~-~~~~~~~~~~~~~~i~D~~g~ 66 (184) ......+|+++|..++|||||++++.......... ... .. .. ............+.+||+||+ T Consensus 9 ~~~~~~~i~i~G~~~~GKStLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 88 (407) T 6BK7_B 9 SLEKTRNIGIMAHVDAGKTTTTERILYYTGKIHKIGETHEGASQMDWMEQEQERGITITSAATTAQWKGYRVNIIDTPGH 88 (407) T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSCC------------------------CCCCSEEEEEETTEEEEEECCCSS T ss_pred ChhhceEEEEEecCCCChhHHHHHHHHHhCCcccceeccCCcccccchHHHHHHCceeEeeeEEEEeCCEEEEEEeCCCC Confidence 34567899999999999999999988553211100 000 00 00 000011112357899999999 Q sequence1 67 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 127 (184) Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~ 127 (184) ..+...+..++..+|++++|+|+........ ...+.... ....|+++|+||+|+... T Consensus 89 ~~~~~~~~~~~~~~d~~l~vvd~~~~~~~~~-~~~~~~~~---~~~~~~ivv~nK~D~~~~ 145 (407) T 6BK7_B 89 VDFTIEVQRSLRVLDGAVTVLDSQSGVEPQT-ETVWRQAT---EYKVPRIVFCNKMDKIGA 145 (407) T ss_dssp CCCSSHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHH---HTTCCEEEEEECTTSTTC T ss_pred cChHHHHHHHHhhCCEEEEEEECCCCCChhH-HHHHHHHH---HhCCCEEEEEeCccCCCC Confidence 8887777778889999999999987432221 12222222 125889999999999763
##### No 392 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5FG3_A Probable translation initiation factor IF-2; Translation initiaton factor, GTPase, Ribosomal; HET: GDP; 1.9A {Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)} Probab=99.19 E-value=1.6e-14 Score=115.19 Aligned_cols=118 Identities=21% Similarity=0.175 Sum_probs=74.8 Template_Neff=8.500 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN---YVAD--------------IEVDGKQVELALWDTAGLE 67 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~---~~~~--------------~~~~~~~~~~~i~D~~g~~ 67 (184) ..+.+.|+++|..++|||||+.+|................ .... .........+.+||+||++ T Consensus 13 ~~r~~~V~VlGhvdsGKTTLl~~L~~~~~~~~e~g~it~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iDTPGh~ 92 (623) T 5FG3_A 13 RLRQPIVVVLGHVDHGKTTLLDKIRRTAVAAKEAGGITQHIGASIVPADVIEKIAEPLKKVIPVKLVIPGLLFIDTPGHE 92 (623) T ss_dssp CBCCCEEEEECSTTSSHHHHHHHHHHHHHHHCCSSCCCBCSSEEEEEHHHHHHHTGGGTTTSCCCCCSCEEEEESSCSHH T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhcccccccccCCccceeeEEEeeHHHHHHHhhHHhhccCcccccCCEEEEeCCCcH Confidence 3556889999999999999999987654322111100000 0000 0001111357899999999 Q sequence1 68 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184) Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184) .+...+......+|++++|+|+.+.... ...+. ...+.. ...|+++++||+|+.. T Consensus 93 ~f~~~~~~g~~~aD~aILVVda~~g~~~-qT~e~-i~~l~~--~~~P~IVviNKiD~~~ 147 (623) T 5FG3_A 93 LFSNLRRRGGSVADFAILVVDIMEGFKP-QTYEA-LELLKE--RRVPFLIAANKIDRIP 147 (623) T ss_dssp HHHHSEETTEESCSEEEEEEETTTCCCH-HHHHH-HHHHHH--TTCCEEEEEECGGGST T ss_pred HHHHHHHHHhhcCCEEEEEEeCCCCCCH-HHHHH-HHHHHH--cCCCEEEEEEccccCC Confidence 8888888788899999999999863211 11122 222222 2678999999999865
##### No 393 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1KJZ_A eIF2gamma; initiation of translation, TRANSLATION; 1.85A {Pyrococcus abyssi} SCOP: c.37.1.8, b.44.1.1, b.43.3.1 Probab=99.18 E-value=1.9e-14 Score=109.25 Aligned_cols=167 Identities=14% Similarity=0.062 Sum_probs=97.2 Template_Neff=10.700 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENY-VADIE---------------------VDGKQVEL 58 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~---~~t~~~~~-~~~~~---------------------~~~~~~~~ 58 (184) ......+|+++|..++|||||+++|......... ........ ..... .......+ T Consensus 6 ~~~~~~~i~iiG~~~sGKStL~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (410) T 1KJZ_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410) T ss_dssp CCSCCCEEEEESCTTSSHHHHHHHHHTCCCC-CTTTTSSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhCccccCCccccccCcEEEEeeecceeeeCCCCCCcccCCCCCCCCCCccceeeE Confidence 3466789999999999999999999864321110 00000000 00000 00012457 Q sequence1 59 ALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMK 138 (184) Q Consensus 59 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~ 138 (184) .+||+||+..+...+......+|++++|+|..+........+.+ ..+... ...|+++++||+|+.............. T Consensus 86 ~liD~pG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~~~~~~l-~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~i~ 163 (410) T 1KJZ_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MALQII-GQKNIIIAQNKIELVDKEKALENYRQIK 163 (410) T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSSSCCHHHHHHH-HHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHH T ss_pred EEEeCCCCHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHHHHh-CCCeEEEEEeCcccCCHHHHHHHHHHHH Confidence 89999999887766666778899999999987642223332222 222221 2478899999999876322111111100 Q sequence1 139 QEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRA 180 (184) Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184) . ..... ....+.++.+|+.++.++.++++++... T Consensus 164 ~------~~~~~--~~~~~~~i~~S~~~g~~i~~l~~~l~~~ 197 (410) T 1KJZ_A 164 E------FIEGT--VAENAPIIPISALHGANIDVLVKAIEDF 197 (410) T ss_dssp H------HHTTS--TTTTCCEEEEBTTTTBTHHHHHHHHHHH T ss_pred H------HHhcc--CcccCCEEECCcCCCCCHHHHHHHHHHh Confidence 0 00000 0112567889999999999988877654
##### No 394 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1KK1_A eIF2gamma, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER; initiation of translation, TRANSLATION; HET: GNP; 1.8A {Pyrococcus abyssi} SCOP: b.44.1.1, c.37.1.8, b.43.3.1 Probab=99.18 E-value=1.9e-14 Score=109.25 Aligned_cols=167 Identities=14% Similarity=0.062 Sum_probs=97.1 Template_Neff=10.700 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENY-VADIE---------------------VDGKQVEL 58 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~---~~t~~~~~-~~~~~---------------------~~~~~~~~ 58 (184) ......+|+++|..++|||||+++|......... ........ ..... .......+ T Consensus 6 ~~~~~~~i~iiG~~~sGKStL~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (410) T 1KK1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410) T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhCccccCCccccccCcEEEEeeecceeeeCCCCCCcccCCCCCCCCCCccceeeE Confidence 3466789999999999999999999864321110 00000000 00000 00012457 Q sequence1 59 ALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMK 138 (184) Q Consensus 59 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~ 138 (184) .+||+||+..+...+......+|++++|+|..+........+.+ ..+... ...|+++++||+|+.............. T Consensus 86 ~liD~pG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~~~~~~l-~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~i~ 163 (410) T 1KK1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MALQII-GQKNIIIAQNKIELVDKEKALENYRQIK 163 (410) T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHH T ss_pred EEEeCCCCHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHHHHh-CCCeEEEEEeCcccCCHHHHHHHHHHHH Confidence 89999999887766666778899999999987642223332222 222221 2478899999999876322111111100 Q sequence1 139 QEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRA 180 (184) Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184) . ..... ....+.++.+|+.++.++.++++++... T Consensus 164 ~------~~~~~--~~~~~~~i~~S~~~g~~i~~l~~~l~~~ 197 (410) T 1KK1_A 164 E------FIEGT--VAENAPIIPISALHGANIDVLVKAIEDF 197 (410) T ss_dssp H------HHTTS--TTTTCCEEECBTTTTBSHHHHHHHHHHH T ss_pred H------HHhcc--CcccCCEEECCcCCCCCHHHHHHHHHHh Confidence 0 00000 0112567889999999999988877654
##### No 395 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4AC9_A MJ0495-LIKE PROTEIN; SELENOCYSTEINE, TRANSLATION, SECIS ELEMENT, EF-SEC; HET: 5GP, GDP, SO4, CMH, DXC; 3.03A {METHANOCOCCUS MARIPALUDIS} Probab=99.18 E-value=1.9e-14 Score=111.58 Aligned_cols=165 Identities=21% Similarity=0.150 Sum_probs=94.9 Template_Neff=10.100 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQ-------FPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLS 76 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 76 (184) ......+|+++|..++|||||+++|.... ............ ............+.+||+||+.++...+... T Consensus 15 ~~~~~~~v~vlG~~~sGKStL~~~L~~~~~~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~liD~pG~~~~~~~~~~~ 93 (482) T 4AC9_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITID-IGFSAFKLENYRITLVDAPGHADLIRAVVSA 93 (482) T ss_dssp CCCEEEEEEEEESTTSSHHHHHHHHHTC----------------------CCCEEEETTEEEEEECCSSHHHHHHHHHHH T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHhHhccccccccCcHHhhcCeEEE-EEEEEEEeCCeEEEEEeCCCcHHHHHHHHHH Confidence 34568899999999999999999986521 111111100000 0011111223578899999998887777777 Q sequence1 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184) Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184) ...+|++++|+|+++....+.. +. ...... ...|+++++||+|+....... ....... ....... .... T Consensus 94 ~~~~D~~ilvvd~~~~~~~~~~-e~-l~~~~~--~~~~iivv~nK~D~~~~~~~~-~~~~~~~-----~~l~~~~-~~~~ 162 (482) T 4AC9_A 94 ADIIDLALIVVDAKEGPKTQTG-EH-MLILDH--FNIPIIVVITKSDNAGTEEIK-RTEMIMK-----SILQSTH-NLKN 162 (482) T ss_dssp TTTCCEEEEEEETTTBCCHHHH-HH-HHHHHH--TTCCEEEEEECGGGSCHHHHH-HHHHHHH-----HHHTTSS-TTSS T ss_pred HhhCCEEEEEEeCCCCCChhHH-HH-HHHHHH--cCCCEEEEEecCCCCChHHHH-HHHHHHH-----HHHHHhc-CccC Confidence 7889999999998764322211 11 111221 246789999999987643211 1110000 0000000 1112 Q sequence1 157 FGYMECSAKTKDGVREVFEMATRA 180 (184) Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184) ..++++|+.++.|+.++++++... T Consensus 163 ~~~i~iSa~~g~~i~~l~~~L~~~ 186 (482) T 4AC9_A 163 SSIIPISAKTGFGVDELKNLIITT 186 (482) T ss_dssp CCEEECBTTTTBTHHHHHHHHHHH T ss_pred CeEEEeecCCCCChHHHHHHHHHH Confidence 567889999999998887766543
##### No 396 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4AC9_C MJ0495-LIKE PROTEIN; SELENOCYSTEINE, TRANSLATION, SECIS ELEMENT, EF-SEC; HET: 5GP, GDP, SO4, CMH, DXC; 3.03A {METHANOCOCCUS MARIPALUDIS} Probab=99.18 E-value=1.9e-14 Score=111.58 Aligned_cols=165 Identities=21% Similarity=0.150 Sum_probs=96.4 Template_Neff=10.100 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQ-------FPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLS 76 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 76 (184) ......+|+++|..++|||||+++|.... ............ ............+.+||+||+.++...+... T Consensus 15 ~~~~~~~v~vlG~~~sGKStL~~~L~~~~~~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~liD~pG~~~~~~~~~~~ 93 (482) T 4AC9_C 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITID-IGFSAFKLENYRITLVDAPGHADLIRAVVSA 93 (482) T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHGGGGTCCSSCCCCCCCCCCCCC-SSCCEEEETTEEEEEECCSSHHHHHHHHHHH T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHhHhccccccccCcHHhhcCeEEE-EEEEEEEeCCeEEEEEeCCCcHHHHHHHHHH Confidence 34568899999999999999999986521 111111100000 0011111223578899999998887777777 Q sequence1 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184) Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184) ...+|++++|+|+++....+.. +. ...... ...|+++++||+|+....... ....... ....... .... T Consensus 94 ~~~~D~~ilvvd~~~~~~~~~~-e~-l~~~~~--~~~~iivv~nK~D~~~~~~~~-~~~~~~~-----~~l~~~~-~~~~ 162 (482) T 4AC9_C 94 ADIIDLALIVVDAKEGPKTQTG-EH-MLILDH--FNIPIIVVITKSDNAGTEEIK-RTEMIMK-----SILQSTH-NLKN 162 (482) T ss_dssp TTTEEEEEEEEETTTBCCHHHH-HH-HHHHHH--TTCCEEEEEECGGGSCHHHHH-HHHHHHH-----HHHTTSS-SGGG T ss_pred HhhCCEEEEEEeCCCCCChhHH-HH-HHHHHH--cCCCEEEEEecCCCCChHHHH-HHHHHHH-----HHHHHhc-CccC Confidence 7889999999998764322211 11 111221 246789999999987643211 1110000 0000000 1112 Q sequence1 157 FGYMECSAKTKDGVREVFEMATRA 180 (184) Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184) ..++++|+.++.|+.++++++... T Consensus 163 ~~~i~iSa~~g~~i~~l~~~L~~~ 186 (482) T 4AC9_C 163 SSIIPISAKTGFGVDELKNLIITT 186 (482) T ss_dssp CCEEECCTTTCTTHHHHHHHHHHH T ss_pred CeEEEeecCCCCChHHHHHHHHHH Confidence 567889999999998887766543
##### No 397 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4ACA_B TRANSLATION ELONGATION FACTOR SELB; SELENOCYSTEINE, TRANSLATION, SECIS ELEMENT, EF-SEC; HET: 5GP, CMH, SO4, DXC; 3.15A {METHANOCOCCUS MARIPALUDIS} Probab=99.18 E-value=1.9e-14 Score=111.58 Aligned_cols=165 Identities=21% Similarity=0.150 Sum_probs=95.8 Template_Neff=10.100 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQ-------FPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLS 76 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 76 (184) ......+|+++|..++|||||+++|.... ............ ............+.+||+||+.++...+... T Consensus 15 ~~~~~~~v~vlG~~~sGKStL~~~L~~~~~~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~liD~pG~~~~~~~~~~~ 93 (482) T 4ACA_B 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITID-IGFSAFKLENYRITLVDAPGHADLIRAVVSA 93 (482) T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHHHC------------CCCCCCC-SSCCEEEETTEEEEEECCSSHHHHHHHHHHH T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHhHhccccccccCcHHhhcCeEEE-EEEEEEEeCCeEEEEEeCCCcHHHHHHHHHH Confidence 34568899999999999999999986521 111111100000 0011111223578899999998887777777 Q sequence1 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184) Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184) ...+|++++|+|+++....+.. +. ...... ...|+++++||+|+....... ....... ....... .... T Consensus 94 ~~~~D~~ilvvd~~~~~~~~~~-e~-l~~~~~--~~~~iivv~nK~D~~~~~~~~-~~~~~~~-----~~l~~~~-~~~~ 162 (482) T 4ACA_B 94 ADIIDLALIVVDAKEGPKTQTG-EH-MLILDH--FNIPIIVVITKSDNAGTEEIK-RTEMIMK-----SILQSTH-NLKN 162 (482) T ss_dssp TTTCCEEEEEEETTTCCCHHHH-HH-HHHHHH--TTCCEEEEEECGGGSCHHHHH-HHHHHHH-----HHHTTSS-SCTT T ss_pred HhhCCEEEEEEeCCCCCChhHH-HH-HHHHHH--cCCCEEEEEecCCCCChHHHH-HHHHHHH-----HHHHHhc-CccC Confidence 7889999999998764322211 11 111221 246789999999987643211 1110000 0000000 1112 Q sequence1 157 FGYMECSAKTKDGVREVFEMATRA 180 (184) Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184) ..++++|+.++.|+.++++++... T Consensus 163 ~~~i~iSa~~g~~i~~l~~~L~~~ 186 (482) T 4ACA_B 163 SSIIPISAKTGFGVDELKNLIITT 186 (482) T ss_dssp CCEEECBTTTTBTHHHHHHHHHHH T ss_pred CeEEEeecCCCCChHHHHHHHHHH Confidence 567889999999998887766543
##### No 398 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6YXY_EQ bL28m, uL29m, uL30m, bL32m, bL35m; mitoribosome, assembly, LSU, RIBOSOME; HET: ATP, PM8, MG, SPD, NAD, GTP; 3.1A {Trypanosoma brucei brucei} Probab=99.18 E-value=1.9e-14 Score=114.00 Aligned_cols=161 Identities=11% Similarity=0.048 Sum_probs=91.6 Template_Neff=6.500 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD--------------- 70 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------------- 70 (184) ...++|+++|..++|||||+++++.........+......... .......+.+||+||...+. T Consensus 74 ~~~p~IvVIG~~gsGKSSLIn~Ll~~~~~~~~~~~~gtT~~i~--~~~~~~~l~LVDTPG~~~~~~~~l~~~~~e~e~~~ 151 (655) T 6YXY_EQ 74 HSFPEVCFIGKPNVGKSSIISCLLRNPRLGRAGRVRGTTRLLQ--FFNVGDALLLVDTPGYGGWKGRHLPQSVAERASAF 151 (655) T ss_dssp TCCCEEEEEESSSSSHHHHHHHHTTCTTTSCCCSSSCSCCSEE--EEEETTTEEEEECCCSSCCCSCCCSSHHHHHHHHH T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcccCCCCCCCCceEEEE--EEEcCCcEEEEeCCCCCCccccCCcccHHHHHHHH Confidence 4567899999999999999999986643211111100110000 00113367899999965332 Q sequence1 71 RLRPLSY-----PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPE 145 (184) Q Consensus 71 ~~~~~~~-----~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (184) ..+..++ ..+|++++|+|.+.... .....+...+.. ...|+++|+||+|+...... ...... . T Consensus 152 ~ll~~yl~~r~~~~aD~VILVVDas~~~~--~qd~ell~~L~~--~~iPiIVViNK~Dl~~~~~e--~~~~~i------~ 219 (655) T 6YXY_EQ 152 AILFRYLALRSKGPLKRVYWVMEATKPVQ--PRDEEIFVFLRN--EQIPFSIIISKLDYFGGDGA--ALRRQV------E 219 (655) T ss_dssp HHHHHHHHHGGGTTEEEEEEEECSSCCCC--HHHHHHHHHHHH--HTCCEEEEECCGGGTSSCHH--HHHHHH------H T ss_pred HHHHHHHHHccCCCCcEEEEEeeCCCCCC--hHHHHHHHHHHh--CCCCeEEEEeceecCCCChh--HHHHHH------H Confidence 1122233 27899999999986432 221223333322 24789999999999764210 000000 0 Q sequence1 146 EGRDMANRIGAFGYMECSAKTK-----DGVREVFEMATRAA 181 (184) Q Consensus 146 ~~~~~~~~~~~~~~~~~s~~~~-----~~i~~~~~~~~~~~ 181 (184) ........ ....++.+|++++ .|+.+++.++.+.+ T Consensus 220 ei~~~L~~-~~v~ii~VSAktg~~~~~~GI~eL~~~I~~~l 259 (655) T 6YXY_EQ 220 SIYNFLGT-EDVPVLGVRADSSRPERCINMTALQHDITHYC 259 (655) T ss_dssp HHHHHHCC-SSSCEEECBCCSSCGGGCBSCHHHHHHHHHHH T ss_pred HHHHHhcc-CCCCEEEEecCCCCcchhcCHHHHHHHHHHHc Confidence 00111111 2367889999999 88888887776543
##### No 399 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1SKQ_B Elongation factor 1-alpha; Elongation factors, archaea, protein synthesis; HET: GDP; 1.8A {Sulfolobus solfataricus} SCOP: b.43.3.1, c.37.1.8, b.44.1.1 Probab=99.17 E-value=2e-14 Score=109.89 Aligned_cols=161 Identities=13% Similarity=0.122 Sum_probs=88.8 Template_Neff=10.600 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT-----------------------------VFE-NYVADIEVDG 53 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t-----------------------------~~~-~~~~~~~~~~ 53 (184) ...+.++|+++|..++|||||+++|............ ... .......... T Consensus 2 ~~~~~~~i~v~G~~~sGKStLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 81 (435) T 1SKQ_B 2 SQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET 81 (435) T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHBCCCSSHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-----------CEEEC T ss_pred CCCCcEEEEEEeCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCcHHHHHHHhcCHHHHhcCceeeeeEEEEEe Confidence 4567789999999999999999998754211000000 000 0000001112 Q sequence1 54 KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDS-----LENIPEKWTPEVKHFCPNVP-IILVGNKKDLRND 127 (184) Q Consensus 54 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s-----~~~~~~~~~~~~~~~~~~~~-~~vv~nK~D~~~~ 127 (184) ....+.+||+||+..+...+..+...+|++++|+|++.... +......+...... ...| +++++||+|+... T Consensus 82 ~~~~~~liD~pG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~ivv~nK~D~~~~ 159 (435) T 1SKQ_B 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT--MGLDQLIVAVNKMDLTEP 159 (435) T ss_dssp SSCEEEEEECTTSTTHHHHHHHSSSCCSEEEEEEECSTTHHHHHSSSSCHHHHHHHHHHH--TTCCCEEEEEECGGGSSS T ss_pred CCeEEEEEeCCCchhhHHHHHHHHccCCEEEEEEECCCCccccCcCCCCchHHHHHHHHH--cCCCEEEEEEECccCCCC Confidence 23467899999998887777777788999999999886532 11111112222221 1344 9999999998753 Q sequence1 128 EHTRRELAKMKQEPVKPEEGRDMANRI----GAFGYMECSAKTKDGVRE 172 (184) Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~~i~~ 172 (184) ........... .....+.... ....++++|+.++.|+.+ T Consensus 160 ~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~i~iSa~~g~~i~~ 202 (435) T 1SKQ_B 160 PYDEKRYKEIV------DQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 202 (435) T ss_dssp TTCHHHHHHHH------HHHHHHHHHTTCCCTTEEEEECBTTTTBTTTB T ss_pred CCCHHHHHHHH------HHHHHHHHHcCCCccccEEEEeeccccccCCC Confidence 21111111100 0011111111 125678899999988854
##### No 400 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6N0B_C Septin-12; cytoskeleton component septin GTPase, STRUCTURAL; HET: GDP; 1.739A {Homo sapiens} Probab=99.16 E-value=2.5e-14 Score=103.48 Aligned_cols=163 Identities=15% Similarity=0.107 Sum_probs=77.2 Template_Neff=10.800 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-------FENYVA--DIEVDGKQVELALWDTAGLEDY----- 69 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~-------~~~~~~--~~~~~~~~~~~~i~D~~g~~~~----- 69 (184) ......+|+++|..|+|||||++++.+........+.. ...... ....++..+.+.+||++|.... T Consensus 13 ~~~~~~~i~vvG~~g~GKSsli~~l~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 92 (285) T 6N0B_C 13 DPGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 92 (285) T ss_dssp ---CEEEEEEECCTTSSHHHHHTTSSSSCSSBTTBCCGGGSCCSSCCCEEEEEEEECSSCEEEEEEEECTTTTCSSBCTT T ss_pred CCCcceEEEEECCCCCCHHHHHHHHhCCccCCCCCCCCCccccceeEEEEEEEEEeeCCEEEEEEEEECCCCCcCCCCcc Confidence 34567899999999999999999988765432211110 000001 1112223357899999994321 Q sequence1 70 ---------DRLRPLS-------------YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 127 (184) Q Consensus 70 ---------~~~~~~~-------------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~ 127 (184) ...+..+ ...+++++++++..... +......+...+ ....|+++|+||.|.... T Consensus 93 ~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~v~~v~~~~~~-~~~~~~~~~~~l---~~~~~vi~v~~k~D~~~~ 168 (285) T 6N0B_C 93 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRL---HEKVNIIPLIAKADTLTP 168 (285) T ss_dssp TTHHHHHHHHHHHHHHHHHHHSSSCCSCCCCCCCEEEEEECCCSSC-CCHHHHHHHHHH---TTTSCEEEEESSGGGSCH T ss_pred chHHHHHHHHHHHHHHHHHhhccccccCCCCceeEEEEEeCCCCCC-CCHHHHHHHHHH---hhcCCeEEEEeccccCCH Confidence 0001111 12367778887775322 222111222222 235789999999999754 Q sequence1 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) ......... ........ ...++.+|+..+.++.+++.++.+.+ T Consensus 169 ~~~~~~~~~----------~~~~~~~~-~~~~~~~s~~~~~~~~~l~~~l~~~~ 211 (285) T 6N0B_C 169 EECQQFKKQ----------IMKEIQEH-KIKIYEFPETDDEEENKLVKKIKDRL 211 (285) T ss_dssp HHHHHHHHH----------HHHHHHHT-TCCCCCCC-----------CTTTTSC T ss_pred HHHHHHHHH----------HHHHHHHC-CCceecCCCCCchHHHHHHHHHHhcC Confidence 321110000 00011111 14677888888888888777665543
##### No 401 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6UQQ_A Septin-2, Septin-8; cytoskeleton protein, septin, STRUCTURAL PROTEIN; HET: GDP; 2.75A {Homo sapiens} Probab=99.16 E-value=2.5e-14 Score=103.48 Aligned_cols=163 Identities=15% Similarity=0.107 Sum_probs=83.8 Template_Neff=10.800 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-------FENYVA--DIEVDGKQVELALWDTAGLEDY----- 69 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~-------~~~~~~--~~~~~~~~~~~~i~D~~g~~~~----- 69 (184) ......+|+++|..|+|||||++++.+........+.. ...... ....++..+.+.+||++|.... T Consensus 13 ~~~~~~~i~vvG~~g~GKSsli~~l~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 92 (285) T 6UQQ_A 13 DPGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 92 (285) T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHTTSCSSCSSSCCGGGSCCSSCCCEEEEEEEEETTEEEEEEEEECTTTTCSSCCTT T ss_pred CCCcceEEEEECCCCCCHHHHHHHHhCCccCCCCCCCCCccccceeEEEEEEEEEeeCCEEEEEEEEECCCCCcCCCCcc Confidence 34567899999999999999999988765432211110 000001 1112223357899999994321 Q sequence1 70 ---------DRLRPLS-------------YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 127 (184) Q Consensus 70 ---------~~~~~~~-------------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~ 127 (184) ...+..+ ...+++++++++..... +......+...+ ....|+++|+||.|.... T Consensus 93 ~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~v~~v~~~~~~-~~~~~~~~~~~l---~~~~~vi~v~~k~D~~~~ 168 (285) T 6UQQ_A 93 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRL---HEKVNIIPLIAKADTLTP 168 (285) T ss_dssp TTHHHHHHHHHHHHHHHHHHSCSSCCSCCCCCCCEEEEEECCCSSC-CCHHHHHHHHHH---TTTSCEEEEESCGGGSCH T ss_pred chHHHHHHHHHHHHHHHHHhhccccccCCCCceeEEEEEeCCCCCC-CCHHHHHHHHHH---hhcCCeEEEEeccccCCH Confidence 0001111 12367778887775322 222111222222 235789999999999754 Q sequence1 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) ......... ........ ...++.+|+..+.++.+++.++.+.+ T Consensus 169 ~~~~~~~~~----------~~~~~~~~-~~~~~~~s~~~~~~~~~l~~~l~~~~ 211 (285) T 6UQQ_A 169 EECQQFKKQ----------IMKEIQEH-KIKIYEFPETDDEEENKLVKKIKDRL 211 (285) T ss_dssp HHHHHHHHH----------HHHHHHHT-TCCCCCCC---CTTHHHHHHHHHTTC T ss_pred HHHHHHHHH----------HHHHHHHC-CCceecCCCCCchHHHHHHHHHHhcC Confidence 321110000 00011111 14677888888888888777665543
##### No 402 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5CK4_A Putative signal recognition particle protein; Arf-like GTPase, protein translocation, signaling; HET: GDP; 1.89A {Chaetomium thermophilum} Probab=99.16 E-value=2.6e-14 Score=105.13 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=23.0 Template_Neff=10.100 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSK 30 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~ 30 (184) ..+..+|+++|+.|+|||||+++|.. T Consensus 16 ~~~~~~v~ivG~~gsGKSTll~~L~~ 41 (316) T 5CK4_A 16 YTTLPSVLLIGPSGAGKTALLTLFER 41 (316) T ss_dssp -CCSCEEEEECCTTSSHHHHHHHHHC T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhc Confidence 45678999999999999999999985
##### No 403 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5EE0_A Small ubiquitin-related modifier,Obg-like ATPase 1; OSYCHF1, GTP-BINDING PROTEIN, AMP-PNP, YCHF-TYPE; 2.2A {Oryza sativa subsp. japonica} Probab=99.16 E-value=2.7e-14 Score=108.12 Aligned_cols=124 Identities=19% Similarity=0.126 Sum_probs=75.4 Template_Neff=9.800 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGK---------------QVELALWDTAGLE- 67 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~- 67 (184) .....+|+++|.+++|||||+++|+....... ..+++...........+. ...+.+||+||.. T Consensus 22 ~~~~~~I~vvG~~~sGKStLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~D~pG~~~ 101 (395) T 5EE0_A 22 FSSHLKIGIVGLPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYVPDERFDWLCQLYKPKSEVSAYLEINDIAGLVR 101 (395) T ss_dssp SCSCCCEEEECCTTSSHHHHHHHHHHTBCCGGGCTTSCCCTTEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCCC-- T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhcCCCCchhCCCCCCCCceEEEEechHHHHHHHHHhCCCccccceEEEEEcCCccC Confidence 45678999999999999999999986644311 111111111111111111 3468999999973 Q sequence1 68 ------DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT-----PEVKHFCPNVPIILVGNKKDLRNDE 128 (184) Q Consensus 68 ------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~-----~~~~~~~~~~~~~vv~nK~D~~~~~ 128 (184) .+...+..++..+|++++|+++....++......+. ..+.......|+++|+||+|..... T Consensus 102 ~~~~~~~~~~~~~~~l~~ad~ii~Vvd~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iivV~nK~D~~~~~ 173 (395) T 5EE0_A 102 GAHAGEGLGNAFLSHIRAVDGIFHVLRAFEDKEVTHIDDSVDPVRDLETIGEELRLKDIEFVQNKIDDLEKS 173 (395) T ss_dssp ------CCSHHHHHHHTTCSCEEEEEECCCCSSCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CccCCCChHHHHHHHHhhCCEEEEEEeccCCCCCccCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH Confidence 233445556778999999999887543333221111 1111112368899999999998653
##### No 404 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2YWE_A GTP-binding protein lepA; G domain, Beta-barrel, Ferredoxin-like domain; 2.05A {Aquifex aeolicus} Probab=99.16 E-value=2.9e-14 Score=113.33 Aligned_cols=160 Identities=19% Similarity=0.154 Sum_probs=93.4 Template_Neff=8.900 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---------------V-PTVFENYVADIEV---DGKQVELALWDTAG 65 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~---------------~-~t~~~~~~~~~~~---~~~~~~~~i~D~~g 65 (184) ..+..+++++|..++|||||+.+|......... . ..+.......+.. .+....+.+||+|| T Consensus 3 ~~~~rni~IiG~~~~GKSTL~~~Ll~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~~~~~~liDtPG 82 (600) T 2YWE_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600) T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC T ss_pred cccceEEEEEcCCCCCHHHHHHHHHHHhCCCChHHHHhHHhhcchhHHhcCceeeeeEEEEEEECCCCCEEEEEEEeCCC Confidence 456678999999999999999998754221000 0 0000000000011 11346789999999 Q sequence1 66 LEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPE 145 (184) Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (184) +..+...+...+..+|++++|+|+......+.. ..+...+ ....|+++++||+|+...... . .... . . T Consensus 83 h~df~~~~~~~l~~~D~aILvVDa~~g~~~qt~-~~l~~~~---~~~lpiivviNK~D~~~~~~~-~-~~~~----i--~ 150 (600) T 2YWE_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAV---EQDLVIIPVINKIDLPSADVD-R-VKKQ----I--E 150 (600) T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHH---HTTCEEEEEEECTTSTTCCHH-H-HHHH----H--H T ss_pred CcccHHHHHHHHHhCCEEEEEEECCCCCcHHHH-HHHHHHH---HCCCcEEEEEecCCCCCCCHH-H-HHHH----H--H Confidence 998887777778889999999999875433322 2222222 125789999999998653210 0 0000 0 0 Q sequence1 146 EGRDMANRIGAFGYMECSAKTKDGVREVFEMATRA 180 (184) Q Consensus 146 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184) .... .....++.+|++++.|+.++++.+... T Consensus 151 ~~l~----~~~~~~i~~Sa~~g~gi~~ll~~i~~~ 181 (600) T 2YWE_A 151 EVLG----LDPEEAILASAKEGIGIEEILEAIVNR 181 (600) T ss_dssp HTSC----CCGGGCEECBTTTTBSHHHHHHHHHHH T ss_pred HHhC----CCHHHhHHHhhhcCCCHHHHHHHHHHh Confidence 0000 011236778999999998888776543
##### No 405 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2YWF_A GTP-binding protein lepA; G domain, Beta-barrel, Ferredoxin-like domain; HET: GNP; 2.24A {Aquifex aeolicus} Probab=99.16 E-value=2.9e-14 Score=113.33 Aligned_cols=160 Identities=19% Similarity=0.154 Sum_probs=95.7 Template_Neff=8.900 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---------------V-PTVFENYVADIEV---DGKQVELALWDTAG 65 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~---------------~-~t~~~~~~~~~~~---~~~~~~~~i~D~~g 65 (184) ..+..+++++|..++|||||+.+|......... . ..+.......+.. .+....+.+||+|| T Consensus 3 ~~~~rni~IiG~~~~GKSTL~~~Ll~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~~~~~~liDtPG 82 (600) T 2YWF_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600) T ss_dssp GGGEEEEEEEECTTSSHHHHHHHHHHHHTCC-------------------CCCCCSCSEEEEEECTTSCEEEEEEECCCC T ss_pred cccceEEEEEcCCCCCHHHHHHHHHHHhCCCChHHHHhHHhhcchhHHhcCceeeeeEEEEEEECCCCCEEEEEEEeCCC Confidence 456678999999999999999998754221000 0 0000000000011 11346789999999 Q sequence1 66 LEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPE 145 (184) Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (184) +..+...+...+..+|++++|+|+......+.. ..+...+ ....|+++++||+|+...... . .... . . T Consensus 83 h~df~~~~~~~l~~~D~aILvVDa~~g~~~qt~-~~l~~~~---~~~lpiivviNK~D~~~~~~~-~-~~~~----i--~ 150 (600) T 2YWF_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAV---EQDLVIIPVINKIDLPSADVD-R-VKKQ----I--E 150 (600) T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTCSCHHHH-HHHHHHH---HTTCEEEEEEECTTSTTCCHH-H-HHHH----C--C T ss_pred CcccHHHHHHHHHhCCEEEEEEECCCCCcHHHH-HHHHHHH---HCCCcEEEEEecCCCCCCCHH-H-HHHH----H--H Confidence 998887777778889999999999875433322 2222222 125789999999998653210 0 0000 0 0 Q sequence1 146 EGRDMANRIGAFGYMECSAKTKDGVREVFEMATRA 180 (184) Q Consensus 146 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184) .... .....++.+|++++.|+.++++.+... T Consensus 151 ~~l~----~~~~~~i~~Sa~~g~gi~~ll~~i~~~ 181 (600) T 2YWF_A 151 EVLG----LDPEEAILASAKEGIGIEEILEAIVNR 181 (600) T ss_dssp CCCC----CCGGGCEECBTTTTBSHHHHHHHHHHH T ss_pred HHhC----CCHHHhHHHhhhcCCCHHHHHHHHHHh Confidence 0000 011236778999999998888776543
##### No 406 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4D61_i 40S RIBOSOMAL PROTEIN SA, 40S; CRPV IRES, RIBOSOME, TERMINATION, RELEASE; 9.0A {ORYCTOLAGUS CUNICULUS} Probab=99.15 E-value=3e-14 Score=108.72 Aligned_cols=160 Identities=14% Similarity=0.105 Sum_probs=88.6 Template_Neff=10.500 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEV--Y----------------------VPTV-----FEN-YVADIEVDGKQV 56 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~--~----------------------~~t~-----~~~-~~~~~~~~~~~~ 56 (184) +..+|+++|..++|||||+++|........ . .... ... ............ T Consensus 2 ~~~~i~v~G~~~sGKSTli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 81 (426) T 4D61_i 2 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 81 (426) T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHTSSCCHHHHHHTSSCCCCCEEEEECSSC T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCChhHHHHhcCCHHHHHcCceeEEEEEEEEcCCc Confidence 467999999999999999998874211000 0 0000 000 000001111234 Q sequence1 57 ELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDS---L---ENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEH 129 (184) Q Consensus 57 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-~~vv~nK~D~~~~~~ 129 (184) .+.+||+||+..+...+..+...+|++++|+|+.+... + ....+ +...... ...| +++++||+|+..... T Consensus 82 ~i~liDtpG~~~~~~~~~~~~~~~d~~i~vvd~~~~~~e~~~~~~~~~~~-~l~~~~~--~~~~~iivvinK~D~~~~~~ 158 (426) T 4D61_i 82 HFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE-HAMLAKT--AGVKHLIVLINKMDDPTVNW 158 (426) T ss_dssp EEEEEEECCCSSSHHHHHHHCCCCCEEEEEEECSHHHHHHHHHCCCSHHH-HHHHHHH--TTCCEEEEEEECCCTTTTTC T ss_pred EEEEEeCCCChHHHHHHHHHHhcCCEEEEEEECCCCcccCCCCCCcchHH-HHHHHHH--hCCCEEEEEEECCCccCCCC Confidence 67899999998887777777788999999999876421 0 11111 1111111 2456 899999999864221 Q sequence1 130 TRRELAKMKQEPVKPEEGRDMANRI-----GAFGYMECSAKTKDGVREVFE 175 (184) Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~~~~~ 175 (184) .......... ......... ....++++|+.++.|+.++.. T Consensus 159 ~~~~~~~~~~------~l~~~l~~~~~~~~~~~~~i~~Sa~~g~~i~~~~~ 203 (426) T 4D61_i 159 SNERYEECKE------KLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 203 (426) T ss_dssp CSSHHHHHHH------TTTHHHHHSCHHHHHTCCCEECBTTTTBTSSSCCT T ss_pred CHHHHHHHHH------HHHHHHHHcCCCchhcccEEECccCCccCcccccc Confidence 1111111000 000111111 124688999999999887643
##### No 407 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5EE3_B Small ubiquitin-related modifier,Obg-like ATPase 1; osychf1, GTP-BINDING PROTEIN, ATP, AMP-PNP; HET: ANP, EPE; 2.9A {Oryza sativa subsp. japonica} Probab=99.15 E-value=3e-14 Score=107.88 Aligned_cols=124 Identities=19% Similarity=0.126 Sum_probs=73.7 Template_Neff=9.800 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGK---------------QVELALWDTAGLE- 67 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~- 67 (184) .....+|+++|.+++|||||+++|........ ..+++............. ...+.+||+||.. T Consensus 22 ~~~~~~I~vvG~~~sGKStLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~D~pG~~~ 101 (395) T 5EE3_B 22 FSSHLKIGIVGLPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYVPDERFDWLCQLYKPKSEVSAYLEINDIAGLVR 101 (395) T ss_dssp SCSCCEEEEECCTTSSHHHHHHHHHHTCCCGGGCTTCCCCTTEEEEECCCHHHHHHHHHHCCSEEECCEEEEEESHHHHC T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhcCCCCchhCCCCCCCCceEEEEeccHHHHHHHHHhCCCcceecEEEEEEcCCccC Confidence 45678999999999999999999986643211 111111111111111111 3468999999973 Q sequence1 68 ------DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT-----PEVKHFCPNVPIILVGNKKDLRNDE 128 (184) Q Consensus 68 ------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~-----~~~~~~~~~~~~~vv~nK~D~~~~~ 128 (184) .+...+..++..+|++++|+++....++......+. ..+.......|+++|+||+|..... T Consensus 102 ~~~~~~~~~~~~~~~l~~aD~ii~Vvd~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iivV~nK~D~~~~~ 173 (395) T 5EE3_B 102 GAHAGEGLGNAFLSHIRAVDGIFHVLRAFEDKEVTHIDDSVDPVRDLETIGEELRLKDIEFVQNKIDDLEKS 173 (395) T ss_dssp C----CSSCHHHHHHHTTCSEEEEEEECCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CccCCCChHHHHHHHHhhCCEEEEEEeccCCCCCccCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH Confidence 233445556778999999999887544433221211 1111112368899999999998653
##### No 408 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2WSM_B HYDROGENASE EXPRESSION/FORMATION PROTEIN (HYPB); METAL BINDING PROTEIN; 2.3A {ARCHAEOGLOBUS FULGIDUS} Probab=99.15 E-value=3.1e-14 Score=99.18 Aligned_cols=156 Identities=16% Similarity=0.050 Sum_probs=87.8 Template_Neff=11.100 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-------P-TVFENY-----VADIEV------------------D 52 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~-------~-t~~~~~-----~~~~~~------------------~ 52 (184) ......+|+|+|..|+|||||++++.......... + ...... ...... . T Consensus 26 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (221) T 2WSM_B 26 RESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKK 105 (221) T ss_dssp HHTTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECC----------------CEECCCTTCSSCCHHHHHHHTGG T ss_pred HhhCCeEEEEEcCCCCCHHHHHHHHHHHHcCCCeEEEEECCcCChhHHHHHHHcCCEEEEecCCCccccCHHHHHHHHHH Confidence 34567899999999999999999998653110000 0 000000 000000 0 Q sequence1 53 GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRR 132 (184) Q Consensus 53 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~ 132 (184) .....+.+||++|...... .....+|++++|+|..+..++... +.... ..+.++|+||.|+...... T Consensus 106 ~~~~~~~iid~~g~~~~~~---~~~~~~d~~i~v~d~~~~~~~~~~---~~~~~-----~~~~ivv~nk~D~~~~~~~-- 172 (221) T 2WSM_B 106 FSDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDVVEK---HPEIF-----RVADLIVINKVALAEAVGA-- 172 (221) T ss_dssp GTTCSEEEEEEEECSSGGG---GCCCSCSEEEEEEEGGGCTTHHHH---CHHHH-----TTCSEEEEECGGGHHHHTC-- T ss_pred hcCCCEEEEcCCCCccccc---chhcCCCeEEEEEECCccchhHHh---CHHHH-----hhCCEEEEeChHhcchhcc-- Confidence 0134677899999743221 223567899999999876543321 11111 2456899999999864210 Q sequence1 133 ELAKMKQEPVKPEEGRDMAN-RIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ..+. ...... ......++.+|++++.|+++++.++...+. T Consensus 173 ~~~~----------~~~~l~~~~~~~~~~~~s~~~~~gi~~l~~~l~~~~~ 213 (221) T 2WSM_B 173 DVEK----------MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221) T ss_dssp CHHH----------HHHHHHHHCTTSEEEEEBTTTTBSHHHHHHHHHC--- T ss_pred cHHH----------HHHHHHHHCCCCeEEEeecccCCCHHHHHHHHHHHHH Confidence 0000 000001 111256889999999999999998887664
##### No 409 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2GED_A Signal recognition particle receptor beta; protein transport, G protein, signal; HET: SO4; 2.2A {Saccharomyces cerevisiae} Probab=99.15 E-value=3.4e-14 Score=96.69 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=75.9 Template_Neff=11.500 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPD----TD 81 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~----~~ 81 (184) ....+++++|..++|||+|++++............ ........ ....+.+||++|...+...+..++.. ++ T Consensus 46 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~ 120 (193) T 2GED_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ---EPLSAADY--DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK 120 (193) T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------CC--CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEE T ss_pred ccCCEEEEECCCCCCHHHHHHHHccCCCCCCccCC---CcceEEEe--CCCeEEEEECCCChhHHHHHHHHHHhhhcccc Confidence 35679999999999999999998866542211110 00111111 23457899999987666666666666 89 Q sequence1 82 VILMCFSID-SPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRND 127 (184) Q Consensus 82 ~~i~v~d~~-~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~ 127 (184) ++++|++++ ...++......+....... ....|+++++||+|.... T Consensus 121 ~~i~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~vv~~k~D~~~~ 171 (193) T 2GED_A 121 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193) T ss_dssp EEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC T ss_pred EEEEEEECCCCHHhHHHHHHHHHHHHHHhhcccccCCcEEEEEechhhCCC Confidence 999999998 6555555444444433321 136899999999998653
##### No 410 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1KK3_A eIF2gamma, GUANOSINE-5'-DIPHOSPHATE; initiation of translation, TRANSLATION; HET: GDP; 1.9A {Pyrococcus abyssi} SCOP: b.43.3.1, b.44.1.1, c.37.1.8 Probab=99.15 E-value=3.5e-14 Score=107.83 Aligned_cols=167 Identities=14% Similarity=0.072 Sum_probs=96.4 Template_Neff=10.600 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENY-VADIEV---------------------DGKQVEL 58 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~---~~t~~~~~-~~~~~~---------------------~~~~~~~ 58 (184) .....++|+++|..++|||||+++|......... .+...... ...... ......+ T Consensus 6 ~~~~~~~i~iiG~~~~GKStLi~~l~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (410) T 1KK3_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410) T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHTCCCC--CCTTSSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCccccCCccccccCeEeEEeeecceEeeCCCCCCcccCCCCCCCCCCcceeeeE Confidence 3456789999999999999999998864321110 00000000 000000 0012457 Q sequence1 59 ALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMK 138 (184) Q Consensus 59 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~ 138 (184) .+||+||++.+...+......+|++++|+|..+........+.+ ..+... ...|+++++||+|+...........+.. T Consensus 86 ~liD~pG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~~~~~~l-~~~~~~-~~~~iivvinK~D~~~~~~~~~~~~~i~ 163 (410) T 1KK3_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MALQII-GQKNIIIAQNKIELVDKEKALENYRQIK 163 (410) T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSCCHHHHHHH-HHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHH T ss_pred EEEeCCCcHHHHHHHHHHHhcCCEEEEEEECCCCCCChHHHHHH-HHHHHh-CCCeEEEEEEccccCCHHHHHHHHHHHH Confidence 89999998877666666778899999999988653233332222 222211 2478899999999876322111111100 Q sequence1 139 QEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRA 180 (184) Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184) . ..... ......++.+|+.++.++.++++.+... T Consensus 164 ~------~~~~~--~~~~~~~~~~S~~~g~~i~~l~~~l~~~ 197 (410) T 1KK3_A 164 E------FIEGT--VAENAPIIPISALHGANIDVLVKAIEDF 197 (410) T ss_dssp H------HHTTS--TTTTCCEEECBTTTTBTHHHHHHHHHHH T ss_pred H------HHhcc--chhcCCEEecccccCCCHHHHHHHHHHh Confidence 0 00000 0112457889999999999888877654
##### No 411 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1S0U_A Translation initiation factor 2 gamma; translation initiation, GTPase, EF-1A, tRNA; 2.4A {Methanocaldococcus jannaschii} SCOP: c.37.1.8, b.43.3.1, b.44.1.1 Probab=99.13 E-value=4.6e-14 Score=107.15 Aligned_cols=168 Identities=16% Similarity=0.122 Sum_probs=89.1 Template_Neff=10.500 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENY-VADIEV---------------------DGKQVE 57 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~---~~t~~~~~-~~~~~~---------------------~~~~~~ 57 (184) ......++|+++|..++|||||+++|......... ........ ...... ...... T Consensus 3 ~~~~~~~~I~v~G~~~~GKStLi~~L~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (408) T 1S0U_A 3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRR 82 (408) T ss_dssp --CCCCEEEEEESCTTSSHHHHHHHHHSCCCC-------CCCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEE T ss_pred cccCCcEEEEEEcCCCCCHHHHHHHHhCcccccChhHHhcceEeEEEEeeceeccCCCCCCcccCCCCCcccCCCCCceE Confidence 34567889999999999999999999754221110 00000000 000000 001245 Q sequence1 58 LALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKM 137 (184) Q Consensus 58 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~ 137 (184) +.+||+||+..+...+......+|++++|+|.+.........+. ...+... ...++++++||+|+............. T Consensus 83 i~liD~pG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~~~~~~-l~~~~~~-~~~~iivvinK~D~~~~~~~~~~~~~i 160 (408) T 1S0U_A 83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEH-LMALEIL-GIDKIIIVQNKIDLVDEKQAEENYEQI 160 (408) T ss_dssp EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHH-HHHHHHT-TCCCEEEEEECTTSSCTTTTTTHHHHH T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCEEEEEEECCCCCCcHHHHHH-HHHHHHh-CCCcEEEEEEchhcCCHHHHHHHHHHH Confidence 78999999887766666677789999999998764222222222 2222211 234689999999987532211111110 Q sequence1 138 KQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRA 180 (184) Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184) .. ..... ......++.+|+.++.++.++++++.+. T Consensus 161 ~~------~~~~~--~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 195 (408) T 1S0U_A 161 KE------FVKGT--IAENAPIIPISAHHEANIDVLLKAIQDF 195 (408) T ss_dssp HH------HHTTS--TTTTCCEEEC------CHHHHHHHHHHH T ss_pred HH------HHHHh--CCccCCEEECCcccCCCHHHHHHHHHHh Confidence 00 00000 0112467889999999999888877554
##### No 412 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4ZU9_A Elongation factor SelB; Small GTPase, EF-Tu like, TRANSLATION; HET: SO4, GNP, MSE; 3.191A {Aquifex aeolicus VF5} Probab=99.12 E-value=5e-14 Score=111.68 Aligned_cols=161 Identities=16% Similarity=0.068 Sum_probs=95.0 Template_Neff=9.400 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQF---PEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~---~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184) +.++|+++|..++|||||+++|.+... .....+..... ....+..++....+.+||+||++.+...+......+|+ T Consensus 2 ~~~~I~v~G~~~sGKStLi~~L~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~i~liD~pG~~~~~~~~~~~~~~~d~ 81 (582) T 4ZU9_A 2 KYILFATAGHVDHGKTTLIKTLTGIDTDRLPEEKKRGLSIDIGFAYIDFPDINTRLEIIDVPGHERFIKNAIAGICSASG 81 (582) T ss_dssp EEEEEEEEECTTSSHHHHHHHHTSCCSCCSHHHHHHTCCCSCEEEEEEETTTTEEEEEEECCCSGGGHHHHHHHHHTCSE T ss_pred CceEEEEEcCCCCCHHHHHHHHhcccccCCHHHHHcCceeEEEEEEEEcCCCCceEEEEeCCCCHHHHHHHHHHHhcCCE Confidence 467899999999999999999986322 11111111111 11122222223578999999999887777777888999 Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR-IGAFGYME 161 (184) Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 161 (184) +++|++.++.... ...+.+ ..+... ...++++++||+|+...........+ ...+... ....+++. T Consensus 82 ~ilVvda~~g~~~-qt~e~l-~~~~~~-~~~~iivvinK~D~~~~~~~~~~~~~----------i~~~l~~~~~~~~ii~ 148 (582) T 4ZU9_A 82 LILVVDPNEGIMP-QTIEHL-RVAKSF-GIKHGIAVLTKMDKVDEELAHIAEEE----------LIAFLEKEEMNMEIVK 148 (582) T ss_dssp EEEEECTTTCSCH-HHHHHH-HHHHHT-TCCEEEEEECCGGGSCHHHHHHHHHH----------HHHHHHHTTCCCEEEE T ss_pred EEEEEcCCCCCCh-HHHHHH-HHHHHh-CCCEEEEEEecccCCCHHHHHHHHHH----------HHHHHHhcCCCCeEEE Confidence 9999998763211 121222 222111 23446888999998753211000000 0001000 01256888 Q sequence1 162 CSAKTKDGVREVFEMATRA 180 (184) Q Consensus 162 ~s~~~~~~i~~~~~~~~~~ 180 (184) +|+.++.|+.++++++... T Consensus 149 vSa~~g~~i~~l~~~l~~~ 167 (582) T 4ZU9_A 149 VSAVTGQGIEDLKNSIKKL 167 (582) T ss_dssp CBTTTTBTHHHHHHHHHHH T ss_pred eecCCCCCHHHHHHHHHHH Confidence 9999999998887766543
##### No 413 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2GED_B Signal recognition particle receptor beta; protein transport, G protein, signal; HET: SO4; 2.2A {Saccharomyces cerevisiae} Probab=99.12 E-value=5.3e-14 Score=95.68 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=72.9 Template_Neff=11.600 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPD----TD 81 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~----~~ 81 (184) .+..+++++|..++|||++++++............ .....+.. ....+.+||++|...+...+..++.. ++ T Consensus 46 ~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~ 120 (193) T 2GED_B 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ---EPLSAADY--DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK 120 (193) T ss_dssp -CCCEEEEECCTTSSHHHHHHHHC-------------------CCC--CCTTCSEEEETTCCEESCCHHHHHHHHGGGEE T ss_pred CCCCEEEEECCCCCCHHHHHHHHccCCCCCeeecc---ccceEEEe--CCceEEEEeCCCChhHHHhHHHHHHhcccccc Confidence 46789999999999999999998866532211110 00111111 23467899999987776666666666 89 Q sequence1 82 VILMCFSID-SPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRND 127 (184) Q Consensus 82 ~~i~v~d~~-~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~ 127 (184) ++++|++.+ ...++......+....... ....|+++++||.|.... T Consensus 121 ~~l~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vivv~~k~D~~~~ 171 (193) T 2GED_B 121 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193) T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC T ss_pred EEEEEEeCCCCHHHHHHHHHHHHHHHhhcccccccCCeEEEEEechhcCCC Confidence 999999998 5555555444444333221 136889999999998653
##### No 414 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5CYO_A Septin-9; septin 9 gtpase domain, HYDROLASE; HET: GDP; 2.0354A {Homo sapiens} Probab=99.12 E-value=5.4e-14 Score=101.25 Aligned_cols=118 Identities=19% Similarity=0.175 Sum_probs=67.7 Template_Neff=10.700 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-----EN---YVA--DIEVDGKQVELALWDTAGLEDYDRL---- 72 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~-----~~---~~~--~~~~~~~~~~~~i~D~~g~~~~~~~---- 72 (184) .+++|+++|..|+|||||++++.............. .. ... .....+....+.+||+||....... T Consensus 3 ~~~~i~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~ 82 (274) T 5CYO_A 3 FEFNIMVVGQSGLGKSTLINTLFKSKISRKSVQPTSEERIPKTIEIKSITHDIEEKGVRMKLTVIDTPGFGDHINNENCW 82 (274) T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHHHSCCCC-CCEECCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCCCCSSBCTTTT T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCCCcccCCCceEEEEEEEEEeeCCEEEEEEEEEcCCCCcCCCccccH Confidence 468999999999999999999987644322111100 00 000 0111122356899999996543111 Q sequence1 73 ----------RPLSYPD--------------TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128 (184) Q Consensus 73 ----------~~~~~~~--------------~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~ 128 (184) +..++.. +++++++++.+......... .+...+ ....|+++|+||+|..... T Consensus 83 ~~i~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~l---~~~~~vi~Vi~K~D~~~~~ 158 (274) T 5CYO_A 83 QPIMKFINDQYEKYLQEEVNINRKKRIPDTRVHCCLYFIPATGHSLRPLDI-EFMKRL---SKVVNIVPVIAKADTLTLE 158 (274) T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCSSCCCCCCCEEEEEECCCSSCCCHHHH-HHHHHH---HTTSEEEEEETTGGGSCHH T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCCceeEEEEEecCCCCCCCHHHH-HHHHHH---hhhCCeEEEEeccCCCCHH Confidence 2222222 78899998876533222221 111222 2357899999999998643
##### No 415 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4ZKD_A Superkiller protein 7 (Ski7); GTPase, translation, NGD, Ski, hydrolase; HET: GDP; 2.181A {Saccharomyces cerevisiae} Probab=99.12 E-value=5.9e-14 Score=109.31 Aligned_cols=167 Identities=19% Similarity=0.194 Sum_probs=88.1 Template_Neff=10.100 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-------------P-----------------TVFENY-VADIEVD- 52 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~-------------~-----------------t~~~~~-~~~~~~~- 52 (184) ..+..+|+++|..++|||||+++|.......... + ...... ....... T Consensus 16 ~~~~~~I~viG~~~sGKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 95 (499) T 4ZKD_A 16 HPLNLTCLFLGDTNAGKSTLLGHLLYDLNEISMSSMRELQKKSSNLDPSSSNSFKVILDNTKTERENGFSMFKKVIQVEN 95 (499) T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCSCHHHHHHHHHHGGGGSSCSCCTTHHHHCCSHHHHHHTSCCSCEEEEECS T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHhcCCCCCccchhhhhcCCcchhhcCCceeeEEEEEec Confidence 3467899999999999999999998754321000 0 000000 0000000 Q sequence1 53 ---GKQVELALWDTAGLEDYDR---LRPLSYPDTDVILMCFSIDSPD---SLENIP---EKWTPEVKHF----CPNVPII 116 (184) Q Consensus 53 ---~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~~i~v~d~~~~~---s~~~~~---~~~~~~~~~~----~~~~~~~ 116 (184) .....+.+||+||+..+.. ....++..+|++++|+|++... ++.... ..+....... ....|++ T Consensus 96 ~~~~~~~~i~liD~pG~~~~~~~~~~~~~~~~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 175 (499) T 4ZKD_A 96 DLLPPSSTLTLIDTPGSIKYFNKETLNSILTFDPEVYVLVIDCNYDSWEKSLDGPNNQIYEILKVISYLNKNSACKKHLI 175 (499) T ss_dssp TTSCTTEEEEEEECCCSHHHCCCCCHHHHHHHCCSEEEEEEECSTTHHHHTCCSTTSHHHHHHHHHTTTTTTCSSCCCEE T ss_pred CCCCCCccEEEEECCCChhcCChhHhhHHhhcCCCEEEEEEECCCchhhhccCCcchHHHHHHHHHHHhccccccCCEEE Confidence 2345788999999886642 2223347899999999998751 121111 1111111111 1368899 Q sequence1 117 LVGNKKDLRNDEHTR-RELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175 (184) Q Consensus 117 vv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 175 (184) +++||+|+....... ..+........ .....+. .....++++|++++.|+.++++ T Consensus 176 vvinK~D~~~~~~~~~~~i~~~l~~~l--~~~~~~~--~~~~~~i~~Sa~~g~~i~~~~~ 231 (499) T 4ZKD_A 176 ILLNKADLISWDKHRLEMIQSELNYVL--KENFQWT--DAEFQFIPCSGLLGSNLNKTEN 231 (499) T ss_dssp EEEECGGGGTTCHHHHHHHHHHHHHCC--CCCTCCC--GGGEEEEECBTTTTBTTCC--- T ss_pred EEEECccccCCCHHHHHHHHHHHHHHH--HHhcCCC--cccCEEEEcccccccccccccc Confidence 999999987532110 00000000000 0000010 0125788999999999887654
##### No 416 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4ZKE_A Superkiller protein 7 (Ski7); GTPase, translation, NGD, Ski, hydrolase; HET: PGE, GTP; 2.251A {Saccharomyces cerevisiae} Probab=99.12 E-value=5.9e-14 Score=109.31 Aligned_cols=167 Identities=19% Similarity=0.194 Sum_probs=88.1 Template_Neff=10.100 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-------------P-----------------TVFENY-VADIEVD- 52 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~-------------~-----------------t~~~~~-~~~~~~~- 52 (184) ..+..+|+++|..++|||||+++|.......... + ...... ....... T Consensus 16 ~~~~~~I~viG~~~sGKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 95 (499) T 4ZKE_A 16 HPLNLTCLFLGDTNAGKSTLLGHLLYDLNEISMSSMRELQKKSSNLDPSSSNSFKVILDNTKTERENGFSMFKKVIQVEN 95 (499) T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCSCHHHHHHHHHHHHHSCTTTCCTTHHHHCCSHHHHHHTSCCSCEEEEECS T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHhcCCCCCccchhhhhcCCcchhhcCCceeeEEEEEec Confidence 3467899999999999999999998754321000 0 000000 0000000 Q sequence1 53 ---GKQVELALWDTAGLEDYDR---LRPLSYPDTDVILMCFSIDSPD---SLENIP---EKWTPEVKHF----CPNVPII 116 (184) Q Consensus 53 ---~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~~i~v~d~~~~~---s~~~~~---~~~~~~~~~~----~~~~~~~ 116 (184) .....+.+||+||+..+.. ....++..+|++++|+|++... ++.... ..+....... ....|++ T Consensus 96 ~~~~~~~~i~liD~pG~~~~~~~~~~~~~~~~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 175 (499) T 4ZKE_A 96 DLLPPSSTLTLIDTPGSIKYFNKETLNSILTFDPEVYVLVIDCNYDSWEKSLDGPNNQIYEILKVISYLNKNSACKKHLI 175 (499) T ss_dssp TTSCTTEEEEEEECCCSHHHCCCCCHHHHHHHCCSEEEEEEECSTTHHHHTCCSTTCHHHHHHHHHTTSSTTCSSCCCEE T ss_pred CCCCCCccEEEEECCCChhcCChhHhhHHhhcCCCEEEEEEECCCchhhhccCCcchHHHHHHHHHHHhccccccCCEEE Confidence 2345788999999886642 2223347899999999998751 121111 1111111111 1368899 Q sequence1 117 LVGNKKDLRNDEHTR-RELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175 (184) Q Consensus 117 vv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 175 (184) +++||+|+....... ..+........ .....+. .....++++|++++.|+.++++ T Consensus 176 vvinK~D~~~~~~~~~~~i~~~l~~~l--~~~~~~~--~~~~~~i~~Sa~~g~~i~~~~~ 231 (499) T 4ZKE_A 176 ILLNKADLISWDKHRLEMIQSELNYVL--KENFQWT--DAEFQFIPCSGLLGSNLNKTEN 231 (499) T ss_dssp EEEECGGGGTTCHHHHHHHHHHHHHHH--HHTTCCC--GGGEEEEECBTTTTBTTCC--- T ss_pred EEEECccccCCCHHHHHHHHHHHHHHH--HHhcCCC--cccCEEEEcccccccccccccc Confidence 999999987532110 00000000000 0000010 0125788999999999887654
##### No 417 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3WY9_B Elongation factor 1-alpha, 50S ribosomal; multi-domain, GTPase, aminoacyl-tRNA delivery, GTP; HET: GDP; 2.3A {Pyrococcus horikoshii OT3} Probab=99.11 E-value=6.2e-14 Score=107.22 Aligned_cols=159 Identities=15% Similarity=0.108 Sum_probs=87.7 Template_Neff=10.600 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-----------------------------PTVFENYVADIEVDG 53 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~-----------------------------~t~~~~~~~~~~~~~ 53 (184) +...+..+|+++|..++|||||+++++......... ..... ......... T Consensus 2 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~-~~~~~~~~~ 80 (434) T 3WY9_B 2 PKEKPHVNIVFIGHVDHGKSTTIGRLLYDTGNIPETIIKKFEEMGEKGKSFKFAWVMDRLKEERERGITI-DVAHTKFET 80 (434) T ss_dssp ---CCEEEEEEESSTTSSHHHHHHHHHHHHTCCCHHHHHHHC-------CCCHHHHHHHHHHHHHTTCCH-HHHCCEEEE T ss_pred CCCCCcEEEEEEeCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHhhhcCCccHHHHHHhccHHHHhhCccc-chheEEEec Confidence 455678899999999999999999987432110000 00000 000001111 Q sequence1 54 KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRE 133 (184) Q Consensus 54 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~ 133 (184) ....+.+||+||+..+...+......+|++++|+|.++... ... ..+...+... ...++++++||+|+....... T Consensus 81 ~~~~~~liD~pG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~-~~~-~~~l~~~~~~-~~~~~ivv~nK~D~~~~~~~~-- 155 (434) T 3WY9_B 81 PHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATDGVM-PQT-KEHAFLARTL-GIKHIIVTINKMDMVNYDQKV-- 155 (434) T ss_dssp TTEEEEEEECSSSTTHHHHHHHTSSCCSEEEEEEETTTCSC-HHH-HHHHHHHHHT-TCCEEEEEEECGGGGTTCHHH-- T ss_pred CCcEEEEEeCCCcHHHHHHHHHHHhhCCEEEEEEECCCCCC-HHH-HHHHHHHHHh-CCCEEEEEEeccCCCCCCHHH-- Confidence 23467899999998887777777788999999999876321 111 1122222221 234589999999987532110 Q sequence1 134 LAKMKQEPVKPEEGRDMANRI--GAFGYMECSAKTKDGVREV 173 (184) Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~ 173 (184) ..... .....+.... ....++.+|+.++.++.++ T Consensus 156 ~~~~~------~~~~~~~~~~~~~~~~~i~~Sa~~g~~i~~~ 191 (434) T 3WY9_B 156 FEKVK------AQVEKLLKTLGYKDFPVIPTSAWNGDNVVKK 191 (434) T ss_dssp HHHHH------HHHHHHHHHTTCCCCCEEECCTTTCBTTTBC T ss_pred HHHHH------HHHHHHHHHhCCCCCCEEEecccCCCccccc Confidence 00000 0001111111 1256788899998887543
##### No 418 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1R5B_A Eukaryotic peptide chain release factor; TRANSLATION TERMINATION, PEPTIDE RELEASE, GTPASE; 2.35A {Schizosaccharomyces pombe} SCOP: c.37.1.8, b.43.3.1, b.44.1.1 Probab=99.11 E-value=6.7e-14 Score=108.03 Aligned_cols=168 Identities=14% Similarity=0.023 Sum_probs=80.0 Template_Neff=10.500 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFP--EV------------YV----------PT------VFENYVADIEVDGK 54 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~--~~------------~~----------~t------~~~~~~~~~~~~~~ 54 (184) ..+.++|+++|..++|||||+++|...... .. .. .. .............. T Consensus 40 ~~~~~~I~viG~~~sGKStli~~L~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~~~t~~~~~~~~~~~ 119 (467) T 1R5B_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467) T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS T ss_pred CCCcEEEEEEecCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCchhHHHHHhcCCHHHHHcCceeeeEEEEeecC Confidence 346789999999999999999988621100 00 00 00 00000000011112 Q sequence1 55 QVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDS------LENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128 (184) Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~ 128 (184) ...+.+||+||+..+...+......+|++++|+|+++... .....+.+ ..... ....++++++||+|+.... T Consensus 120 ~~~i~liDtpG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~~~~~~~~~~~~l-~~~~~-~~~~~iivv~nK~D~~~~~ 197 (467) T 1R5B_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA-VLART-QGINHLVVVINKMDEPSVQ 197 (467) T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH-HHHHH-TTCSSEEEEEECTTSTTCS T ss_pred CcEEEEEeCCCChhHHHHHHHHHhcCCEEEEEEECCCCcccccccCCCchHHHH-HHHHH-cCCCEEEEEEEcCCCCCCC Confidence 3467899999998887777777889999999999886431 11111111 11111 1223489999999986422 Q sequence1 129 HTRRELAKMKQEPVKP-EEGRDMANRIGAFGYMECSAKTKDGVREVFE 175 (184) Q Consensus 129 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 175 (184) ................ .....+. ......++++|+.++.|+.+++. T Consensus 198 ~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~i~vSa~~g~~i~~~~~ 244 (467) T 1R5B_A 198 WSEERYKECVDKLSMFLRRVAGYN-SKTDVKYMPVSAYTGQNVKDRVD 244 (467) T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCC-HHHHEEEEECBTTTTBTTSSCCC T ss_pred CCHHHHHHHHHHHHHHHHHHcCCC-CCCCceEEEeeeccccccccCCC Confidence 1111111100000000 0000000 00125788999999999887654
##### No 419 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5TY0_A Adenosylhomocysteinase (E.C.3.3.1.1); Structural Genomics, Center for Structural; HET: BGC; 2.22A {Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)} Probab=99.11 E-value=6.8e-14 Score=106.57 Aligned_cols=119 Identities=16% Similarity=0.055 Sum_probs=74.3 Template_Neff=10.800 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-----FENY--------------VADIEV-----DGKQVELA 59 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~-----~~~~--------------~~~~~~-----~~~~~~~~ 59 (184) ......+|+++|..++|||||++++............. .... ...... ......+. T Consensus 7 ~~~~~~~i~iiG~~~~GKStLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (422) T 5TY0_A 7 PLKLYRNIGIAAHVDAGKTTTTERVLYYTGMSHKIGEVHDGAATMDWMVQEQERGITITSAATTCYWSGMDKQFESHRIN 86 (422) T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHHHHC-------------------------CCSEEEEEECCTTSCSCCEEEE T ss_pred chhhCcEEEEEeCCCCChHHHHHHHHHHhCCcccceeccCCcceeecHHHHHHhCCChhheeEeeeccCcccccccceEE Confidence 45667899999999999999999987643211100000 0000 000000 01235789 Q sequence1 60 LWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184) Q Consensus 60 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184) +||+||+..+...+...+..+|++++|+|......... ...+.. +. ....|+++++||+|+.. T Consensus 87 liDtpG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~~-~~~l~~-~~--~~~~~~ivv~nK~D~~~ 149 (422) T 5TY0_A 87 IIDTPGHVDFMIEVERSLRVLDGAVVVFDSVAGVEPQS-ETVWRQ-AN--KYGVPRIVFVNKMDRMG 149 (422) T ss_dssp EECCCSCSSCHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHH-HH--HTTCCEEEEEECTTSTT T ss_pred EEcCCCCccHHHHHHHHHhhCCEEEEEEECCCCCChHH-HHHHHH-HH--HHCCCEEEEEeCCccCC Confidence 99999998887777777888999999999876432221 112221 21 13578899999999875
##### No 420 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3CB4_D GTP-binding protein lepA; GTPAse, OB-fold, GTP-binding, Membrane, Nucleotide-binding; 2.8A {Escherichia coli} Probab=99.11 E-value=6.9e-14 Score=111.20 Aligned_cols=159 Identities=20% Similarity=0.206 Sum_probs=91.3 Template_Neff=8.800 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFP--E---------V-----YVPTVFENYVADIEV---DGKQVELALWDTAGLE 67 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~--~---------~-----~~~t~~~~~~~~~~~---~~~~~~~~i~D~~g~~ 67 (184) +..+++++|..++|||||+++|...... . . ....+.......+.. ++....+.+||+||+. T Consensus 3 ~irni~IiG~~~~GKSTL~~~Ll~~~~~~~~~~~~~~~~d~~~~e~ergiti~~~~~~~~~~~~~~~~~~i~liDtPGh~ 82 (599) T 3CB4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599) T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEECCCCCG T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHhCCCChHHHHHHHHhcchhHHhhCeeeEeEEEEEEeeCCCCCEEEEEEEECCCCh Confidence 4568999999999999999998753110 0 0 000000000000111 1123578999999999 Q sequence1 68 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEG 147 (184) Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 147 (184) .+...+...+..+|++++|+|+.+....+.. ..+..... ...|+++|+||+|+..... ...... . T Consensus 83 df~~~~~~~l~~~D~~ilvvDa~~g~~~qt~-~~l~~~~~---~~lpiivViNKiD~~~~~~-~~~~~~----------i 147 (599) T 3CB4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAME---MDLEVVPVLNKIDLPAADP-ERVAEE----------I 147 (599) T ss_dssp GGHHHHHHHHTTCSEEEEEEESSSCCCHHHH-HHHHHHHH---TTCEEEEEEECCSSTTCCH-HHHHHH----------C T ss_pred HhHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHh---CCCCEEEEEecCCCCCCCH-HHHHHH----------H Confidence 8887787888899999999999875433222 22222221 2578999999999865211 000000 0 Q sequence1 148 RDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 181 (184) Q Consensus 148 ~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184) ..... .....++.+|++++.++.++++++.+.+ T Consensus 148 ~~~l~-~~~~~ii~~Sa~~g~gi~~Lld~I~~~i 180 (599) T 3CB4_D 148 EDIVG-IDATDAVRCSAKTGVGVQDVLERLVRDI 180 (599) T ss_dssp CCCCC-CCCTTCEECCSSSCTTHHHHHHHHHHHS T ss_pred HHHhC-CCCccEEEEecCCCCCHHHHHHHHHHhC Confidence 00000 0113577899999999998888776554
##### No 421 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3VQT_A Peptide chain release factor 3; translation, release factor, GTPase; HET: GDP; 1.8A {Desulfovibrio vulgaris} Probab=99.10 E-value=7.4e-14 Score=110.01 Aligned_cols=118 Identities=16% Similarity=0.116 Sum_probs=75.3 Template_Neff=9.400 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT----------VF-----------ENYVADIEVDGKQVELALWDT 63 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t----------~~-----------~~~~~~~~~~~~~~~~~i~D~ 63 (184) .....+|+++|..++|||||++++..........+. .. ...............+.+||+ T Consensus 28 ~~~~~~I~iiG~~~~GKTtLi~~ll~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDt 107 (548) T 3VQT_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDT 107 (548) T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECC T ss_pred HHhCcEEEEEcCCCCCHHHHHHHHHhhcCCccccccccccccccccccchHHHHHHcCCcceeeeeeeecCCeEEEEEEC Confidence 355689999999999999999998854221100000 00 000001111122357899999 Q sequence1 64 AGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184) Q Consensus 64 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184) ||+..+...+..++..+|++++|+|+.+. +......+...... ...|+++++||+|+.. T Consensus 108 pG~~d~~~~~~~~l~~~D~~llVid~~~~--~~~~~~~~l~~~~~--~~~p~iivinK~D~~~ 166 (548) T 3VQT_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKG--VEAQTRKLMDVCRM--RATPVMTFVNKMDREA 166 (548) T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTB--SCHHHHHHHHHHHH--TTCCEEEEEECTTSCC T ss_pred CCCCcchHHHHHHHhhCCEEEEEEeCCCC--ccHHHHHHHHHHHH--hCCCEEEEEeCCCCCC Confidence 99988887787888899999999999862 22221222222221 3578999999999875
##### No 422 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3VR1_B Peptide chain release factor 3; translation, release factor, GTPase; HET: G4P; 3.0A {Desulfovibrio vulgaris} Probab=99.10 E-value=7.4e-14 Score=110.01 Aligned_cols=118 Identities=16% Similarity=0.116 Sum_probs=75.5 Template_Neff=9.400 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT----------VF-----------ENYVADIEVDGKQVELALWDT 63 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t----------~~-----------~~~~~~~~~~~~~~~~~i~D~ 63 (184) .....+|+++|..++|||||++++..........+. .. ...............+.+||+ T Consensus 28 ~~~~~~I~iiG~~~~GKTtLi~~ll~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDt 107 (548) T 3VR1_B 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDT 107 (548) T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHTTEEEEEETTEEEEEECC T ss_pred HHhCcEEEEEcCCCCCHHHHHHHHHhhcCCccccccccccccccccccchHHHHHHcCCcceeeeeeeecCCeEEEEEEC Confidence 355689999999999999999998854221100000 00 000001111122357899999 Q sequence1 64 AGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184) Q Consensus 64 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184) ||+..+...+..++..+|++++|+|+.+. +......+...... ...|+++++||+|+.. T Consensus 108 pG~~d~~~~~~~~l~~~D~~llVid~~~~--~~~~~~~~l~~~~~--~~~p~iivinK~D~~~ 166 (548) T 3VR1_B 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKG--VEAQTRKLMDVCRM--RATPVMTFVNKMDREA 166 (548) T ss_dssp CCGGGCSHHHHHHTTSCSEEEEEEETTTB--SCHHHHHHHHHHHH--TTCCEEEEEECTTSCC T ss_pred CCCCcchHHHHHHHhhCCEEEEEEeCCCC--ccHHHHHHHHHHHH--hCCCEEEEEeCCCCCC Confidence 99988887787888899999999999862 22221222222221 3578999999999875
##### No 423 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2QNR_B Septin-2; septin, Structural Genomics Consortium, SGC; HET: GDP; 2.6A {Homo sapiens} Probab=99.10 E-value=7.8e-14 Score=101.78 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=61.4 Template_Neff=10.600 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT--------VFE--NYVADIEVDGKQVELALWDTAGLED----- 68 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t--------~~~--~~~~~~~~~~~~~~~~i~D~~g~~~----- 68 (184) .....++|+++|..|+|||||++++....+.....+. ... ........++..+.+.+||+||... T Consensus 14 ~~~~~~~I~vvG~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~DtpG~~~~~~~~ 93 (301) T 2QNR_B 14 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 93 (301) T ss_dssp ---CEEEEEEEEETTSSHHHHHHHHHT-----------CC--CCSHHHHHHTCEEEECCEEE--EEEEEECCT-H----- T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCCCCCCCCeeEEEEEEEEEeeCCEEEEEEEEEcCCCCCCCCcc Confidence 3456789999999999999999999876543221110 000 0011112223345789999999322 Q sequence1 69 --YDRL-------RPLSYP-------------DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184) Q Consensus 69 --~~~~-------~~~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184) +..+ +..++. .+++++++++..... .......+...+ ....|+++|+||+|... T Consensus 94 ~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~d~r~~~~l~~i~~~~~~-~~~~~~~~~~~l---~~~~~vi~v~~k~D~~~ 169 (301) T 2QNR_B 94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG-LKPLDVAFMKAI---HNKVNIVPVIAKADTLT 169 (301) T ss_dssp -HHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCCCCEEEEEECTTSSS-CCHHHHHHHHHH---TTTSCEEEEESCGGGSC T ss_pred cchHHHHHHHHHHHHHHHHHhhCCcccccCCCceeEEEEEECCCCCC-CCHHHHHHHHHH---cccCCEEEEEeCcccCC Confidence 2111 111111 267888887766432 111111111112 34688999999999976 Q sequence1 127 D 127 (184) Q Consensus 127 ~ 127 (184) . T Consensus 170 ~ 170 (301) T 2QNR_B 170 L 170 (301) T ss_dssp H T ss_pred H Confidence 4
##### No 424 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4CRN_P ERF3 IN RIBOSOME BOUND ERF1-ERF3-GDPNP; TRANSLATION, TERMINATION, CRYO-EM; HET: GNP; 9.1A {SACCHAROMYCES CEREVISIAE} Probab=99.09 E-value=8.5e-14 Score=106.41 Aligned_cols=160 Identities=13% Similarity=0.067 Sum_probs=88.1 Template_Neff=10.500 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY------------------------VPTV-----FENY-VADIEVDGK 54 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~------------------------~~t~-----~~~~-~~~~~~~~~ 54 (184) ..+.++|+++|..++|||||+++|+........ .... .... ......... T Consensus 2 ~~~~~~i~v~G~~~sGKSTli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~~~t~~~~~~~~~~~ 81 (430) T 4CRN_P 2 GKDHVSLIFMGHVDAGKSTMGGNLLYLTGSVDKRTIEKYEREAKDAGRQGWYLSWVMDTNKEERNDGKTIEVGKAYFETE 81 (430) T ss_dssp CSCCCCCCEEECSSSCHHHHHHHHHTTTTSSCCTTHHHHTTSCCCCTTTCCSSSCSSHHHHHTTTCTTCSSTTCBCCBCS T ss_pred CCceEEEEEEcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCccHHHHHhcCCHHHHhhCceeeeEEEEEEcC Confidence 356789999999999999999998733110000 0000 0000 000011112 Q sequence1 55 QVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDS---L---ENIPEKWTPEVKHFCPNVP-IILVGNKKDLRND 127 (184) Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-~~vv~nK~D~~~~ 127 (184) ...+.+||+||+.++...+......+|++++|+|+++... + ....+ +...+.. ...| +++++||+|+... T Consensus 82 ~~~i~liD~pG~~~~~~~~~~~~~~~d~~ilVvd~~~~~~~~~~~~~~~~~~-~l~~~~~--~~~~~iivv~nK~D~~~~ 158 (430) T 4CRN_P 82 KRRYTILDAPGHKMYVSEMIGGASQADVGVLVISARKGEYETGFERGGQTRE-HALLAKT--QGVNKMVVVVNKMDDPTV 158 (430) T ss_dssp SCBCCBCBCCSSSSHHHCCCCCSCCCSSCEEEECCSHHHHHHTTTCCSTTSH-HHHTTTT--TCCCCCCEEECCSSTTTT T ss_pred CcEEEEEeCCCchhhHHHHHHHHhcCCEEEEEEeCCCCcccccccCCCchHH-HHHHHHH--hCCCEEEEEEECCCCCCC Confidence 2467899999998887777777889999999999876321 1 11111 1111221 1344 8999999998642 Q sequence1 128 EHTRRELAKMKQEPVKPEEGRDMANRI-----GAFGYMECSAKTKDGVREV 173 (184) Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~~~ 173 (184) ........... .....+.... ....++++|+.++.|+.++ T Consensus 159 ~~~~~~~~~~~------~~l~~~~~~~~~~~~~~~~~i~vSa~~g~~i~~~ 203 (430) T 4CRN_P 159 NWSKERYDQCV------SNVSNFLRAIGYNIKTDVVFMPVSGYSGANLKDH 203 (430) T ss_dssp TTCSCSHHHHH------HHHHHHHSSSSCCCSTTCCCEECBTTTBCSSCSC T ss_pred CCCHHHHHHHH------HHHHHHHHHcCCCCCCCeEEEEcCCCccchhhcC Confidence 11111111000 0011111111 1256888999999988754
##### No 425 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4CXG_A ELONGATION FACTOR 1A, 40S RIBOSOMAL; TRANSLATION, MAMMALIAN 80S RIBOSOME, ELONGATION; HET: M2G, OMC, PHE, 5MC, MIA, 7MG, 1MA, 2MG, 5MU, PSU, H2U; 8.7A {ORYCTOLAGUS CUNICULUS} Probab=99.09 E-value=8.7e-14 Score=106.46 Aligned_cols=120 Identities=14% Similarity=0.105 Sum_probs=71.9 Template_Neff=10.700 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFP---------------------------EVY----VPTVFENYVADIEVD 52 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~---------------------------~~~----~~t~~~~~~~~~~~~ 52 (184) ...+.++|+++|..++|||||++++...... +.. ....... ....... T Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~-~~~~~~~ 80 (437) T 4CXG_A 2 AEKPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERERGITID-LTFMKFE 80 (437) T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGTTHHHHCCSHHHHHHTSCCS-CEEEEEE T ss_pred CCCCcEEEEEEeCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCcchHHHHHHhcCHHHHhcCceee-eeEEEEE Confidence 3456789999999999999999998753100 000 0000000 0000111 Q sequence1 53 GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDS------LENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184) Q Consensus 53 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184) .....+.+||+||+.++...+......+|++++|+|+..... ..... .+....... ...++++++||+|+.. T Consensus 81 ~~~~~~~l~D~pG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~~~~~~~~~~-~~l~~~~~~-~~~~~ivv~nK~D~~~ 158 (437) T 4CXG_A 81 TKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMSTEGQTR-EHLLLARTM-GIEQIIVAVNKMDAPD 158 (437) T ss_dssp CSSCEEEEEECCCSGGGHHHHHHHHHTCSEEEEEEECSTTHHHHHTSTTCHHH-HHHHHHHHT-TCCEEEEEEECTTSTT T ss_pred cCCeEEEEEeCCCchHHHHHHHHHHccCCEEEEEEECCCCccccCcCCCCchH-HHHHHHHHh-CCCEEEEEEECCCCCC Confidence 123467899999998887777777889999999999876431 11111 122222111 2234899999999864
##### No 426 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1R5O_A Eukaryotic peptide chain release factor; TRANSLATION TERMINATION, PEPTIDE RELEASE, GTPASE; HET: GNP; 3.2A {Schizosaccharomyces pombe} SCOP: b.43.3.1, c.37.1.8, b.44.1.1 Probab=99.09 E-value=9.2e-14 Score=107.23 Aligned_cols=167 Identities=14% Similarity=0.085 Sum_probs=79.7 Template_Neff=10.600 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQF--PEVYV----------------------PT------VFENYVADIEVDGK 54 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~--~~~~~----------------------~t------~~~~~~~~~~~~~~ 54 (184) ..+.++|+++|..++|||||+++|..... ..... .. .............. T Consensus 40 ~~~~~~v~vvG~~~sGKSTli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~t~~~~~~~~~~~ 119 (467) T 1R5O_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467) T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSCCC----------------------------CCEEEET T ss_pred CCCcEEEEEEecCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCchhHHHHHhcCCHHHHHhCCcceeeEEEeecC Confidence 45678999999999999999999862211 00000 00 00000000011112 Q sequence1 55 QVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDS---L---ENIPEKWTPEVKHFCPNVP-IILVGNKKDLRND 127 (184) Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-~~vv~nK~D~~~~ 127 (184) ...+.+||+||+.++...+...+..+|++++|+|...... + ....+. ...... ...| +++++||+|+... T Consensus 120 ~~~i~liD~pG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~~~~~~~~~~~~-l~~~~~--~~~~~iivv~nK~D~~~~ 196 (467) T 1R5O_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREH-AVLART--QGINHLVVVINKMDEPSV 196 (467) T ss_dssp TEEEEEECCCC-----------TTSCSEEEEEEECSTTHHHHHTSSSCTHHHH-HHHHHH--TTCSSEEEEEECCSSTTT T ss_pred CcEEEEEeCCCChhHHHHHHHHHhcCCEEEEEEECCCCcccccccCCCchHHH-HHHHHH--cCCCEEEEEEEcCCCCCC Confidence 3467899999998887777777788999999999876431 0 111111 111111 1344 8999999998642 Q sequence1 128 EHTRRELAKMKQEPVKP-EEGRDMANRIGAFGYMECSAKTKDGVREVFE 175 (184) Q Consensus 128 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 175 (184) ................. .....+.. .....++++|+.++.|+.+++. T Consensus 197 ~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~i~vSa~~~~~i~~~~~ 244 (467) T 1R5O_A 197 QWSEERYKECVDKLSMFLRRVAGYNS-KTDVKYMPVSAYTGQNVKDRVD 244 (467) T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCCCT-TSSEEEEECBTTTTBTTSSCCC T ss_pred CCcHHHHHHHHHHHHHHHHHHcCCCC-CCCceEEEeeecccccccCCCc Confidence 21111111100000000 00000000 0125678899999998877653
##### No 427 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6B8D_A Adenosylhomocysteinase (E.C.3.3.1.1, 1.8.1.7); Structural Genomics, Center for Structural; 1.78A {Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)} Probab=99.09 E-value=9.3e-14 Score=105.63 Aligned_cols=119 Identities=15% Similarity=-0.038 Sum_probs=69.7 Template_Neff=10.100 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY------------------VPT-VFENYVADIE-----VDGKQVELA 59 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~------------------~~t-~~~~~~~~~~-----~~~~~~~~~ 59 (184) ......+|+++|..++|||||++++......... .+. +......... .......+. T Consensus 9 ~~~~~~~I~vvG~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 88 (408) T 6B8D_A 9 PIERYRNIGISAHIDAGKTTTTERILFYTGVSHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMSQQFPQHRIN 88 (408) T ss_dssp CGGGEEEEEEEECGGGCHHHHHHHHHHHTTSGGGCBC---------------------CCSEEEEEECCTTSCSCCEEEE T ss_pred ccccCeEEEEEecCCCCccHHHHHHHHhhCCcceeeeecCCCceecchhHHHHhCceeeccceeeecccccccCCCceEE Confidence 3466789999999999999999998644211000 000 0000000000 011246889 Q sequence1 60 LWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184) Q Consensus 60 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184) +||+||+.++...+..++..+|++++|+|+.+..... ... +...+.. ...|+++++||+|+.. T Consensus 89 liDtpG~~~~~~~~~~~l~~~D~iilvvd~~~~~~~~-~~~-~l~~~~~--~~~~~ivv~nk~D~~~ 151 (408) T 6B8D_A 89 VIDTPGHVDFTVEVERSMRVLDGAVMVYCAVGGVQPQ-SET-VWRQANK--YEVPRIAFVNKMDRTG 151 (408) T ss_dssp EECCC-----CHHHHHHHHHCSEEEEEEETTTBSCHH-HHH-HHHHHHH--TTCCEEEEEECTTSTT T ss_pred EEeCCCCCCchHHHHHHHhhCCEEEEEEecCCCCchH-HHH-HHHHHHH--hCCCEEEEEeCCCCCC Confidence 9999999888777777888999999999998643221 111 1221211 2578899999999865
##### No 428 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2XEX_B ELONGATION FACTOR G; GTPASE, TRANSLATION, BIOSYNTHETIC PROTEIN; 1.9A {STAPHYLOCOCCUS AUREUS} Probab=99.09 E-value=9.6e-14 Score=112.15 Aligned_cols=160 Identities=13% Similarity=0.063 Sum_probs=92.9 Template_Neff=9.800 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-T----V-----------FENY-VADIEVDGKQVELALWDTAG 65 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~-t----~-----------~~~~-~~~~~~~~~~~~~~i~D~~g 65 (184) +...+..+|+++|..++|||||++++........... . . .... ............+.+||+|| T Consensus 5 ~~~~~~~~I~iiG~~~~GKStli~~ll~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~liDtpG 84 (693) T 2XEX_B 5 FSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPG 84 (693) T ss_dssp SCSTTEEEEEEEECGGGTHHHHHHHHHHHTTTCCCCC----CGGGGTTTSCC--------CCEEEEEETTEEEEEECCCC T ss_pred CChHhceEEEEEeCCCCChHHHHHHHHHHhCCCccceeecCCCccccchHHHHHHCcccccccEEeEeCCEEEEEEeCCC Confidence 3456778999999999999999999875421110000 0 0 0000 00001111234789999999 Q sequence1 66 LEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPE 145 (184) Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (184) +..+...+..++..+|++++|+|+.+....... ..+.. +.. ...|+++++||+|+...... ....... T Consensus 85 ~~~~~~~~~~~l~~~d~~ilvvD~~~~~~~~~~-~~~~~-~~~--~~~p~ivvinK~D~~~~~~~-~~~~~~~------- 152 (693) T 2XEX_B 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWRQ-ATT--YGVPRIVFVNKMDKLGANFE-YSVSTLH------- 152 (693) T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHH-HHH--TTCCEEEEEECTTSTTCCHH-HHHHHHH------- T ss_pred ccchHHHHHHHHHhcCEEEEEEECCCCCChHHH-HHHHH-HHH--hCCCEEEEEeCcccCCCChh-HHHHHHH------- Confidence 988877777788899999999999874322221 22222 211 35789999999999764211 1100000 Q sequence1 146 EGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179 (184) Q Consensus 146 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~ 179 (184) ..+ . ....++.+|+.++.++.++++.+.. T Consensus 153 --~~l-~--~~~~~~~~s~~~~~~~~~l~~~~~~ 181 (693) T 2XEX_B 153 --DRL-Q--ANAAPIQLPIGAEDEFEAIIDLVEM 181 (693) T ss_dssp --HHH-C--CCEEESEEEESCGGGCCEEEETTTT T ss_pred --HHh-c--CCceeeeeccCCccceeeeEEhhhC Confidence 000 0 1134566777777777766665543
##### No 429 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4H9G_A Elongation factor Tu-A (E.C.3.6.5.3); P-loop, GTPase, GTP Binding, tRNA; HET: SO4, GNP; 1.93A {Thermus thermophilus} Probab=99.09 E-value=9.8e-14 Score=105.20 Aligned_cols=121 Identities=19% Similarity=0.122 Sum_probs=73.5 Template_Neff=10.700 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP----------TV-----F-ENYVADIEVDGKQVELALWDTAGL 66 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~----------t~-----~-~~~~~~~~~~~~~~~~~i~D~~g~ 66 (184) +......+|+++|..++|||||+++|........... .. . ...............+.+||+||+ T Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liD~pG~ 85 (405) T 4H9G_A 6 VRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGH 85 (405) T ss_dssp CCCSCEEEEEEECSTTSSHHHHHHHHHHHHHHHCTTCCCCCHHHHSCSHHHHHHTSCCSCEEEEEECSSCEEEEEECCCS T ss_pred cCCCCcEEEEEEcCCCCCHHHHHHHHHHHHhccCCCceecchhhhcCCHHHHhCCeeeEeEEEEEEcCCcEEEEEeCCCC Confidence 4456788999999999999999999875422110000 00 0 000000111122346789999999 Q sequence1 67 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV-GNKKDLRND 127 (184) Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv-~nK~D~~~~ 127 (184) ..+...+..++..+|++++|+|+++... ....+ +...+.. ...|.++| +||+|+... T Consensus 86 ~~~~~~~~~~~~~~d~~ilvvd~~~~~~-~~~~~-~l~~~~~--~~~~~iiv~inK~D~~~~ 143 (405) T 4H9G_A 86 ADYIKNMITGAAQMDGAILVVSAADGPM-PQTRE-HILLARQ--VGVPYIVVFMNKVDMVDD 143 (405) T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCSC-HHHHH-HHHHHHH--TTCCCEEEEEECGGGCCC T ss_pred hHHHHHHHHHHccCCEEEEEEECCCCCC-chHHH-HHHHHHH--hCCCEEEEEEEcccCCCC Confidence 8887667777788999999999986421 11212 2222222 23555555 799998763
##### No 430 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2QNR_A Septin-2; septin, Structural Genomics Consortium, SGC; HET: MSE, GDP; 2.6A {Homo sapiens} Probab=99.09 E-value=9.8e-14 Score=101.26 Aligned_cols=120 Identities=20% Similarity=0.186 Sum_probs=59.3 Template_Neff=10.600 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP---------TVFEN-YVADIEVDGKQVELALWDTAGLED----- 68 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~---------t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~----- 68 (184) .....++|+++|+.|+|||||++++....+...... +.... ....+..++..+.+.+||+||... T Consensus 14 ~~~~~~~I~vvG~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~DtpG~~~~~~~~ 93 (301) T 2QNR_A 14 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 93 (301) T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC--------- T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHhCCccCccccCCCccceeeeeEEEEEEEEEEeeCCEEEEEEEEecCCCCccccch Confidence 345678999999999999999999987654321110 00000 011111223345789999999432 Q sequence1 69 --YDRL-------RPLSYP-------------DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184) Q Consensus 69 --~~~~-------~~~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184) +..+ +..++. .+++++++++..... +......+...+ ....|+++|+||+|+.. T Consensus 94 ~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vi~~~~~~-~~~~~~~~l~~l---~~~~~vi~V~tK~D~~~ 169 (301) T 2QNR_A 94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG-LKPLDVAFMKAI---HNKVNIVPVIAKADTLT 169 (301) T ss_dssp --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSS-CCHHHHHHHHHH---TTTSCEEEEECCGGGSC T ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCccccCCCceeEEEEEeCCCCCC-CCHHHHHHHHHH---hccCcEEEEEecccCCC Confidence 2111 111111 266888887766422 111111111111 34688999999999976 Q sequence1 127 D 127 (184) Q Consensus 127 ~ 127 (184) . T Consensus 170 ~ 170 (301) T 2QNR_A 170 L 170 (301) T ss_dssp H T ss_pred H Confidence 4
##### No 431 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2C78_A ELONGATION FACTOR TU-A (E.C.3.1.5.1); HYDROLASE, GTPASE, TRANSLATION ELONGATION FACTOR; HET: GNP, PUL; 1.4A {THERMUS THERMOPHILUS} SCOP: c.37.1.8, b.44.1.1, b.43.3.1 Probab=99.09 E-value=9.9e-14 Score=105.14 Aligned_cols=121 Identities=19% Similarity=0.122 Sum_probs=71.4 Template_Neff=10.800 Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP---------------TVF-ENYVADIEVDGKQVELALWDTAGL 66 (184) Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~---------------t~~-~~~~~~~~~~~~~~~~~i~D~~g~ 66 (184) +.....++|+++|..++|||||++++........... ... ...............+.+||+||+ T Consensus 6 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liD~pG~ 85 (405) T 2C78_A 6 VRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGH 85 (405) T ss_dssp ---CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCS T ss_pred cCCCCcEEEEEEcCCCCCHHHHHHHHHHHHhccCCCceecchhhhccCHHHHhcCeeeEEEEEEEEcCCeEEEEeeCCCC Confidence 3456788999999999999999999875422110000 000 000000111122346789999999 Q sequence1 67 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV-GNKKDLRND 127 (184) Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv-~nK~D~~~~ 127 (184) ..+...+..+...+|++++|+|+++... ....+ +...+.. ...|.+++ +||+|+... T Consensus 86 ~~~~~~~~~~~~~~d~~ilvid~~~~~~-~~~~~-~l~~~~~--~~~~~iiv~~nK~D~~~~ 143 (405) T 2C78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPM-PQTRE-HILLARQ--VGVPYIVVFMNKVDMVDD 143 (405) T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHH-HHHHHHH--TTCCCEEEEEECGGGCCC T ss_pred HHHHHHHHHhhccCCEEEEEEeCCCCCC-hhHHH-HHHHHHH--hCCCEEEEEEEcccCCCC Confidence 8887777777789999999999886421 11211 2222221 13455544 799998763
##### No 432 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6UPQ_A Septin-2, Septin-11; cytoskeleton protein, septin, STRUCTURAL PROTEIN; HET: GTP, GDP; 1.86A {Homo sapiens} Probab=99.09 E-value=9.9e-14 Score=99.70 Aligned_cols=118 Identities=19% Similarity=0.208 Sum_probs=65.6 Template_Neff=11.100 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFP-EVYVPTV-------FENY--VADIEVDGKQVELALWDTAGLEDY------- 69 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~~t~-------~~~~--~~~~~~~~~~~~~~i~D~~g~~~~------- 69 (184) ..++|+++|..|+|||||++++...... ....++. .... ...+..++....+.+||+||.... T Consensus 2 ~~~~i~vvG~~g~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~DtpG~~~~~~~~~~~ 81 (274) T 6UPQ_A 2 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 81 (274) T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTCCCCTTCCCCCHHHHTTCCCCCEEEEEEEEETTEEEEEEEEECTTTTTSSBCTTTT T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCccCCcccCCCccccccceEEEEEEEEEEEeCCEEEEEEEEecCCCCccccchHHH Confidence 3578999999999999999998865322 1111110 0000 111122233568899999994321 Q sequence1 70 DRL-------RPLSYP-------------DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128 (184) Q Consensus 70 ~~~-------~~~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~ 128 (184) ... +..++. .+++++++++..... +......+...+ ....|+++|+||+|+.... T Consensus 82 ~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~-~~~~~~~~~~~l---~~~~~vi~v~tK~D~~~~~ 156 (274) T 6UPQ_A 82 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG-LKPLDVAFMKAI---HNKVNIVPVIAKADTLTLK 156 (274) T ss_dssp HHHHHHHHHHHHHHHHHHHSSCGGGCCCCCCCEEEEEECSSSSS-CCHHHHHHHHHH---TTTSCEEEEECCGGGSCHH T ss_pred HHHHHHHHHHHHHHHHHhhCCccccCCCCCeeEEEEEeCCCCCC-CCHHHHHHHHHH---cccCCEEEEEeccCCCCHH Confidence 111 111111 267888887776432 111111111112 3468899999999997643
##### No 433 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1H65_A CHLOROPLAST OUTER ENVELOPE PROTEIN OEP34; GTPASE, CHLOROPLAST, TRANSLOCON; HET: GDP; 2.0A {PISUM SATIVUM} SCOP: c.37.1.8 Probab=99.08 E-value=1.1e-13 Score=99.71 Aligned_cols=121 Identities=12% Similarity=0.055 Sum_probs=71.5 Template_Neff=10.200 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSY-------- 77 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~-------- 77 (184) ....+|+++|.+|+|||++++.+.+...........................+.+||+||..........+. T Consensus 37 ~~~~~i~vvG~~g~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 116 (270) T 1H65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270) T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT T ss_pred CCcEEEEEECCCCCCHHHHHHHHhCCCceecCCCCCcCCceEEEEEeeCCEEEEEEECCCCCCCCcchHHHHHHHHHHHc Confidence 566899999999999999999998765432211111111111111222345788999999754432222111 Q sequence1 78 -PDTDVILMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRND 127 (184) Q Consensus 78 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~vv~nK~D~~~~ 127 (184) ..+|++++|+++++....... ..+...+... ....|+++|+||.|+... T Consensus 117 ~~~~d~il~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 169 (270) T 1H65_A 117 DKTIDVLLYVDRLDAYRVDNLD-KLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270) T ss_dssp TCEECEEEEEEESSCCCCCHHH-HHHHHHHHHHHCGGGGGGEEEEEECCSCCCG T ss_pred CCCCCEEEEEEeCCccCCCHHH-HHHHHHHHHHHChhhhcceEEEEeccccCCC Confidence 568999999998763211111 1222222111 124789999999999764
##### No 434 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5CK3_B SRX domain, Putative signal recognition; GTPase, Longin domain, regulator complex; HET: GOL, GTP; 3.2A {Chaetomium thermophilum} Probab=99.07 E-value=1.2e-13 Score=101.21 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=21.2 Template_Neff=10.200 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKD 31 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~ 31 (184) ...+..+|+++|+.|+|||||++.|... T Consensus 6 ~~~~~~~I~vvG~~gsGKSTlin~L~~~ 33 (307) T 5CK3_B 6 QYTTLPSVLLIGPSGAGKTALLTLFERG 33 (307) T ss_dssp -----CEEEEECCTTSCHHHHHHHHHHT T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHhcC Confidence 3456789999999999999999999853
##### No 435 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6NOT_B Elongation factor G; National Institute of Allergy and; 2.4A {Rickettsia prowazekii (strain Madrid E)} Probab=99.07 E-value=1.3e-13 Score=111.68 Aligned_cols=118 Identities=17% Similarity=-0.023 Sum_probs=70.9 Template_Neff=9.500 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV----------------F-ENYVADIEVDGKQVELALWDTAGLE 67 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~----------------~-~~~~~~~~~~~~~~~~~i~D~~g~~ 67 (184) .....+|+++|..++|||||+++|..........+.. . ...............+.+||+||+. T Consensus 15 ~~~ir~I~iiG~~~~GKTtLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~liDtpG~~ 94 (707) T 6NOT_B 15 LEQIRNIGICAHIDAGKTTTTERILYYTGKSHKIGEVHEGGATMDWMEQEQERGITITSAATTCRWQDKVINIIDTPGHV 94 (707) T ss_dssp GGGEEEEEEECCCC----CHHHHHHHHHHC---------------------------CCSEEEEEETTEEEEEECCCCCS T ss_pred HHhceEEEEEecCCCChHHHHHHHHHHhCCCccceeecCCcceecchHHHHHhCeeeeeceEEeEeCCEEEEEEeCCCcc Confidence 4566799999999999999999998543211100000 0 0000011112223578999999998 Q sequence1 68 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184) Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184) .+...+..++..+|++++|+|+++.... .. ..+...... ...|+++++||.|+.. T Consensus 95 ~~~~~~~~~l~~~D~~ilVvd~~~~~~~-~~-~~~l~~~~~--~~~p~iiv~nK~D~~~ 149 (707) T 6NOT_B 95 DFTIEVERSLRVLDGAVAVFDGVAGVEP-QS-ETVWRQADK--YNVPRMCFVNKMDRMG 149 (707) T ss_dssp BCCHHHHHHHHHCSEEEEEEETTTBSCH-HH-HHHHHHHHT--TTCCEEEEEECTTSTT T ss_pred chHHHHHHHHHhCCEEEEEEEcCCCCCh-hH-HHHHHHHHH--hCCCEEEEEeCCCcCC Confidence 8887788888999999999999863211 11 122222211 3578899999999865
##### No 436 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4H1V_A Dynamin-1-like protein (E.C.3.6.5.5); GTPase domain, GTPase, Cytosol, HYDROLASE; HET: GNP; 2.3A {Homo sapiens} Probab=99.06 E-value=1.4e-13 Score=102.93 Aligned_cols=69 Identities=20% Similarity=0.196 Sum_probs=45.6 Template_Neff=11.000 Q sequence1 57 ELALWDTAGLED-------------YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 123 (184) Q Consensus 57 ~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D 123 (184) .+.+||+||... +...+..++..+|++++|++.+...........+...+. ....|+++|+||+| T Consensus 141 ~l~lvD~PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvv~~~~~~~~~~~~~~~~~~~~--~~~~~viiv~tk~D 218 (369) T 4H1V_A 141 NLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKISREVD--PDGRRTLAVITKLD 218 (369) T ss_dssp SEEEEECCCBCSSCGGGSSCTTHHHHHHHHHHHHTCTTEEEEEEEETTSCGGGCHHHHHHTTTS--SSBSSEEEEEECGG T ss_pred CEEEEECCCcccCCCCCCcchHHHHHHHHHHHHhcCCCEEEEEEEcCCCChhhhHHHHHHHHHC--CCCCeEEEEEEehh Confidence 788999999764 344555667788999999988764322221111222221 13578999999999 Q sequence1 124 LRND 127 (184) Q Consensus 124 ~~~~ 127 (184) .... T Consensus 219 ~~~~ 222 (369) T 4H1V_A 219 LMDA 222 (369) T ss_dssp GCCT T ss_pred hcCC Confidence 8764
##### No 437 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5G06_P EXOSOME COMPLEX COMPONENT RRP45, EXOSOME; HYDROLASE, RNA DECAY, EXOSOME, RNA; 4.2A {SACCHAROMYCES CEREVISIAE} Probab=99.06 E-value=1.5e-13 Score=111.53 Aligned_cols=164 Identities=20% Similarity=0.206 Sum_probs=0.0 Template_Neff=7.800 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-------------YVPTV-----------------FENY-VADIEVD-- 52 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-------------~~~t~-----------------~~~~-~~~~~~~-- 52 (184) .+..+|+++|..++|||||+++|+....... ..+.. .... .....+. T Consensus 265 ~~~~~IvViG~vdsGKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~er~~gvti~~~~~~~~~~ 344 (747) T 5G06_P 265 PLNLTCLFLGDTNAGKSTLLGHLLYDLNEISMSSMRELQKKSSNLDPSSSNSFKVILDNTKTERENGFSMFKKVIQVEND 344 (747) T ss_dssp -------------------------------------------------------------------------------- T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccCCCCHHHHHHHHHHHHHhCCCCcchhhHhhcCCHHHHhhCeeEEEEEEEEeec Confidence 5678999999999999999999886532200 00000 0000 0000001 Q sequence1 53 --GKQVELALWDTAGLEDYD---RLRPLSYPDTDVILMCFSIDSP---DSLENIP---EKWTPEVKH----FCPNVPIIL 117 (184) Q Consensus 53 --~~~~~~~i~D~~g~~~~~---~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~---~~~~~~~~~----~~~~~~~~v 117 (184) .....+.+||+||+..+. ..+..++..+|++++|+|++.. .++.... ..+...+.. .....|+++ T Consensus 345 ~~~~~~~~tiiDtPGh~df~~~~~i~~~~~~~aD~aILVIDas~~~~e~~~~~~~~qt~e~l~l~~~l~~~~~~~~piIV 424 (747) T 5G06_P 345 LLPPSSTLTLIDTPGSIKYFNKETLNSILTFDPEVYVLVIDCNYDSWEKSLDGPNNQIYEILKVISYLNKNSACKKHLII 424 (747) T ss_dssp -------------------------------------------------------------------------------- T ss_pred cccCCceEEEEECCCCHHHhhhhhhchHHHhhCCEEEEEEECCCCCcccccCCChHHHHHHHHHHHHHhhhccCCCCEEE Confidence 234578999999988765 2344445789999999999865 2222111 111111111 113688999 Q sequence1 118 VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD-MANRIGAFGYMECSAKTKDGVREV 173 (184) Q Consensus 118 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~i~~~ 173 (184) ++||+|+...... ........ .. ..... +.-......++++|+.+|+|+..+ T Consensus 425 vvNK~Dl~~~~~~--~~~~i~~e-l~-~~L~~~~g~~~~~i~~ipvSal~G~ni~~~ 477 (747) T 5G06_P 425 LLNKADLISWDKH--RLEMIQSE-LN-YVLKENFQWTDAEFQFIPCSGLLGSNLNKT 477 (747) T ss_dssp --------------------------------------------------------- T ss_pred EEeCCcCCCCCHH--HHHHHHHH-HH-HHHHHHhCCCCCCCcEEecccCCCCchhhh Confidence 9999999763211 11110000 00 00000 000011257899999999998764
##### No 438 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3J25_A Tetracycline resistance protein tetM; antibiotic resistance, TRANSLATION; HET: GCP; 7.2A {Enterococcus faecalis} Probab=99.06 E-value=1.5e-13 Score=110.01 Aligned_cols=116 Identities=15% Similarity=0.035 Sum_probs=73.1 Template_Neff=9.900 Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-----TVFENY------------VADIEVDGKQVELALWDTAGLEDYD 70 (184) Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~-----t~~~~~------------~~~~~~~~~~~~~~i~D~~g~~~~~ 70 (184) ..+|+++|..++|||||++++........... ...... ............+.+||+||+..+. T Consensus 2 ~~~I~iiG~~~~GKTtli~~ll~~~~~~~~~~~~~~~~~~~~~~~~e~~~~iti~~~~~~~~~~~~~i~liDtpG~~~~~ 81 (638) T 3J25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638) T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH T ss_pred ceEEEEEcCCCCCHHHHHHHHHhhcCCCccccCCCCCceeeccHHHHHhhCCcceeeeEEeeeCCeEEEEEeCCCchHHH Confidence 46899999999999999999875532211000 000000 0000111123578999999998887 Q sequence1 71 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 127 (184) Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~ 127 (184) ..+...+..+|++++|+|+.+.. ...... +...+.. ...|+++++||+|+... T Consensus 82 ~~~~~~l~~~D~~llvvd~~~~~-~~~~~~-~l~~~~~--~~~p~iiv~nK~D~~~~ 134 (638) T 3J25_A 82 AEVYRSLSVLDGAILLISAKDGV-QAQTRI-LFHALRK--MGIPTIFFINKIDQNGI 134 (638) T ss_dssp HHHHHHHTTCSEEECCEESSCTT-CSHHHH-HHHHHHH--HTCSCEECCEECCSSSC T ss_pred HHHHHHHhcCCEEEEEEecCCCc-cHHHHH-HHHHHHH--cCCCEEEEEeCcCCCCC Confidence 77777788899999999998732 122222 2222221 25789999999998753
##### No 439 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3MCA_A Elongation factor 1 alpha-like protein; protein protein complex, Translation regulation; 2.74A {Schizosaccharomyces pombe} Probab=99.06 E-value=1.6e-13 Score=109.04 Aligned_cols=119 Identities=15% Similarity=0.055 Sum_probs=60.0 Template_Neff=8.600 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV------------------------P-----TVFEN-YVADIEVDGKQ 55 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~------------------------~-----t~~~~-~~~~~~~~~~~ 55 (184) ...++|+++|..++|||||+++|+......... . ..... ........... T Consensus 175 ~~~~~I~viG~~~sGKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 254 (592) T 3MCA_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592) T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------- T ss_pred CCcEEEEEEcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCChhHHHHhcCCHHHHHhCcceeeeeeEEEeCC Confidence 455799999999999999999987432100000 0 00000 00000111223 Q sequence1 56 VELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD---SLE---NIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184) Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184) ..+.+||+||+..+...+...+..+|++++|+|+.... ++. ...+.+ ...... ...++++++||+|+.. T Consensus 255 ~~i~liDtPG~~~~~~~~~~~~~~aD~~IlVVda~~g~~e~g~~~~~qt~e~l-~l~~~l-~v~~iivviNK~D~~~ 329 (592) T 3MCA_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA-YLLRAL-GISEIVVSVNKLDLMS 329 (592) T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH-HHHHHS-SCCCEEEEEECGGGGT T ss_pred eEEEEEeCCCchHHHHHHHHHHhcCCEEEEEEeCCCCccccCCcccchHHHHH-HHHHHc-CCCEEEEEEeCcccCC Confidence 46789999999888777777778999999999998642 121 111111 111111 2234888999999875
##### No 440 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1H65_B CHLOROPLAST OUTER ENVELOPE PROTEIN OEP34; GTPASE, CHLOROPLAST, TRANSLOCON; HET: MSE, GDP; 2.0A {PISUM SATIVUM} SCOP: c.37.1.8 Probab=99.05 E-value=1.7e-13 Score=98.67 Aligned_cols=121 Identities=12% Similarity=0.055 Sum_probs=71.5 Template_Neff=10.200 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSY-------- 77 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~-------- 77 (184) ....+|+++|..|+|||++++.+.+...........................+.+||+||............ T Consensus 37 ~~~~~i~vvG~~gsGKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~ 116 (270) T 1H65_B 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270) T ss_dssp CCEEEEEEEESSSSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceecCCCCCcCCceEEEEEeeCCEEEEEEECCCCCCCCcccHHHHHHHHHHHc Confidence 566899999999999999999998765432211111111111111222345789999999764432222222 Q sequence1 78 -PDTDVILMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRND 127 (184) Q Consensus 78 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~vv~nK~D~~~~ 127 (184) ..+|++++|+++++....... ..+...+... ....|+++|+||.|+... T Consensus 117 ~~~~d~il~v~d~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 169 (270) T 1H65_B 117 DKTIDVLLYVDRLDAYRVDNLD-KLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270) T ss_dssp TEEESEEEEEEESSCCCCCHHH-HHHHHHHHHHHCGGGGGGEEEEEECCSCCCG T ss_pred cCCCCEEEEEEeCCccCCCHHH-HHHHHHHHHHHChhhhcceEEEEeccccCCC Confidence 578899999998863211111 1222222111 123789999999999764
##### No 441 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6NOT_A Elongation factor G; National Institute of Allergy and; 2.4A {Rickettsia prowazekii (strain Madrid E)} Probab=99.05 E-value=1.7e-13 Score=110.95 Aligned_cols=118 Identities=17% Similarity=-0.023 Sum_probs=71.7 Template_Neff=9.500 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV----------------F-ENYVADIEVDGKQVELALWDTAGLE 67 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~----------------~-~~~~~~~~~~~~~~~~~i~D~~g~~ 67 (184) .....+|+++|..++|||||+++|..........+.. . ...............+.+||+||+. T Consensus 15 ~~~ir~I~ilG~~~~GKTtLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~i~liDtpG~~ 94 (707) T 6NOT_A 15 LEQIRNIGICAHIDAGKTTTTERILYYTGKSHKIGEVHEGGATMDWMEQEQERGITITSAATTCRWQDKVINIIDTPGHV 94 (707) T ss_dssp GGGEEEEEEECCCC---CCHHHHHHHHHHC---------------------------CCSEEEEEETTEEEEEECCCSSS T ss_pred HHhceEEEEEcCCCCCHHHHHHHHHhhcCCCcccccccCCCeeeccCHHHHhcCeEEEEeeeeeecCCeEEEEEECCCCC Confidence 4556799999999999999999998542211100000 0 0000011122234678999999998 Q sequence1 68 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184) Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184) .+...+..++..+|++++|+|+++.... .. ..+...... ...|+++++||.|+.. T Consensus 95 ~~~~~~~~~l~~~D~~ilVvd~~~~~~~-~~-~~~l~~~~~--~~~p~iiv~nK~D~~~ 149 (707) T 6NOT_A 95 DFTIEVERSLRVLDGAVAVFDGVAGVEP-QS-ETVWRQADK--YNVPRMCFVNKMDRMG 149 (707) T ss_dssp SSSHHHHHHHHHCSEEEEEEETTTBSCH-HH-HHHHHHHHH--TTCCEEEEEECTTSTT T ss_pred ChHHHHHHHHHhCCEEEEEEECCCCCCH-HH-HHHHHHHHH--cCCCEEEEEeCCCCCC Confidence 8877787888899999999999873211 11 112222211 3578899999999865
##### No 442 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1XB2_A Mitochondrial Elongation factors Tu and; Protein-protein complex, TRANSLATION; 2.2A {Bos taurus} SCOP: b.43.3.1, b.44.1.1, c.37.1.8 Probab=99.05 E-value=1.7e-13 Score=104.04 Aligned_cols=119 Identities=17% Similarity=0.102 Sum_probs=70.8 Template_Neff=10.600 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPE----------------VYVPTVFENYVADIEVDGKQVELALWDTAGLE 67 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~ 67 (184) ......+|+++|..++|||||+++|....... ......... ............+.+||+||++ T Consensus 10 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~t~~-~~~~~~~~~~~~i~liD~pG~~ 88 (409) T 1XB2_A 10 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITIN-AAHVEYSTAARHYAHTDCPGHA 88 (409) T ss_dssp ---CEEEEEEESCGGGTHHHHHHHHHHHTTC-----------------------------CEEEECSSCEEEEECCSCHH T ss_pred cCCCceEEEEEcCCCCCHHHHHHHHHHHHHcCCCceeeeHHHHhcCHHHHhcCceeE-eeEEEEEcCCcEEEEEeCCCCH Confidence 34677899999999999999999987631100 000000000 0001111122467899999998 Q sequence1 68 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRND 127 (184) Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~~vv~nK~D~~~~ 127 (184) .+...+......+|++++|+|.+.... ... ..+...+.. ...| +++++||+|+... T Consensus 89 ~~~~~~~~~~~~~d~~ilvvd~~~~~~-~~~-~~~l~~~~~--~~~~~~ivvinK~D~~~~ 145 (409) T 1XB2_A 89 DYVKNMITGTAPLDGCILVVAANDGPM-PQT-REHLLLARQ--IGVEHVVVYVNKADAVQD 145 (409) T ss_dssp HHHHHHHHTSSCCSEEEEEEETTTCSC-TTH-HHHHHHHHH--TTCCCEEEEEECCCSCCC T ss_pred HHHHHHHhcccCCCEEEEEEeCCCCCC-hhH-HHHHHHHHH--hCCCEEEEEEccccCCCh Confidence 877666667778999999999876421 111 112222221 2466 8899999998763
##### No 443 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5HCI_E GPN-loop GTPase 1 (E.C.3.6.5.-); GPN-loop GTPase, Chaperone, Assembly, RNA; HET: GDP, GOL; 2.3A {Saccharomyces cerevisiae} Probab=99.05 E-value=1.8e-13 Score=97.21 Aligned_cols=128 Identities=14% Similarity=0.136 Sum_probs=67.5 Template_Neff=11.800 Q sequence1 55 QVELALWDTAGLEDYDRL------RPLSYPD--TDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLR 125 (184) Q Consensus 55 ~~~~~i~D~~g~~~~~~~------~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~ 125 (184) ..++.++|+||....... ...++.. +|+++++++.............+...+... ....|+++|+||.|+. T Consensus 98 ~~~~~iiD~pg~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vV~nk~D~~ 177 (261) T 5HCI_E 98 KFQNCIIDTPGQIECFVWSASGAIITESFASSFPTVIAYIVDTPRNSSPTTFMSNMLYACSILYKTKLPMIVVFNKTDVC 177 (261) T ss_dssp TCSEEEEECCSSHHHHHSSHHHHHHHHHHHHHSCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHHHHTCCEEEEEECTTTS T ss_pred ceeEEEEeCCCCchhhcccchHHHHHHHHhhcCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEhHHhC Confidence 356889999997543221 1112333 788999988876432221112222222111 1257889999999998 Q sequence1 126 NDEHTRRELAKM---KQEP----------VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 126 ~~~~~~~~~~~~---~~~~----------~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ............ .... ........+........++.+|+.++.|+.++++++.+.+. T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~l~~~~~ 247 (261) T 5HCI_E 178 KADFAKEWMTDFESFQAAIKEDQDGYMSSLVNSMSLMLEEFYSQLDVVGVSSFTGDGFDEFMQCVDKKVD 247 (261) T ss_dssp CSHHHHHHHHCHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHHCEEEECCTTTCTTHHHHHHHHHHHHH T ss_pred ChhHhhHHhhchHHHHHHHHhCCCcchHHHHHHHHHHHHHhhccceEEEeecCCCcCHHHHHHHHHHHHH Confidence 643211111100 0000 00000000111112357889999999999999998877654
##### No 444 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5HCN_A GPN-loop GTPase 1 (E.C.3.6.5.-); GPN-loop GTPase, Chaperone, Assembly, RNA; HET: DAO, GCP, GOL; 2.2A {Saccharomyces cerevisiae} Probab=99.05 E-value=1.8e-13 Score=97.21 Aligned_cols=128 Identities=14% Similarity=0.136 Sum_probs=67.5 Template_Neff=11.800 Q sequence1 55 QVELALWDTAGLEDYDRL------RPLSYPD--TDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLR 125 (184) Q Consensus 55 ~~~~~i~D~~g~~~~~~~------~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~ 125 (184) ..++.++|+||....... ...++.. +|+++++++.............+...+... ....|+++|+||.|+. T Consensus 98 ~~~~~iiD~pg~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vV~nk~D~~ 177 (261) T 5HCN_A 98 KFQNCIIDTPGQIECFVWSASGAIITESFASSFPTVIAYIVDTPRNSSPTTFMSNMLYACSILYKTKLPMIVVFNKTDVC 177 (261) T ss_dssp TCSEEEEECCSCSHHHHTSHHHHHHHHHHHTTSCEEEEEEECGGGTTSHHHHHHHHHHHHHHHHHHCCCEEEEECCGGGS T ss_pred ceeEEEEeCCCCchhhcccchHHHHHHHHhhcCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEhHHhC Confidence 356889999997543221 1112333 788999988876432221112222222111 1257889999999998 Q sequence1 126 NDEHTRRELAKM---KQEP----------VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184) Q Consensus 126 ~~~~~~~~~~~~---~~~~----------~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184) ............ .... ........+........++.+|+.++.|+.++++++.+.+. T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~l~~~~~ 247 (261) T 5HCN_A 178 KADFAKEWMTDFESFQAAIKEDQDGYMSSLVNSMSLMLEEFYSQLDVVGVSSFTGDGFDEFMQCVDKKVD 247 (261) T ss_dssp CTTHHHHHHHHHHHHHHHHTCSSTTSCSHHHHHHHHHHHHHHHHEEEEECCTTTCTTHHHHHHHHHHHHH T ss_pred ChhHhhHHhhchHHHHHHHHhCCCcchHHHHHHHHHHHHHhhccceEEEeecCCCcCHHHHHHHHHHHHH Confidence 643211111100 0000 00000000111112357889999999999999998877654
##### No 445 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5IZM_A Selenocysteine-specific elongation factor; elongation factor, selenocysteine, selenocysteine tRNA; HET: MSE, GNP; 3.4A {Homo sapiens} Probab=99.02 E-value=2.9e-13 Score=108.05 Aligned_cols=168 Identities=17% Similarity=0.174 Sum_probs=94.0 Template_Neff=8.800 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFP-------EVYVPTVFENY-VADIEV-----------------------D 52 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~-------~~~~~t~~~~~-~~~~~~-----------------------~ 52 (184) .....++|+++|..++|||||+++|...... ........... ...+.. . T Consensus 23 ~~~~~~~V~vlG~~~sGKSTLi~~L~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (616) T 5IZM_A 23 GRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPG 102 (616) T ss_dssp CCEEEEEEEEEESTTSSHHHHHHHHHHCC---------------CCCSCEEEEEEEECCGGGGCC--------------- T ss_pred CCCccEEEEEEcCCCCCHHHHHHHHhcccchhhhhcChhHHhcCceeEeeeeeeecCCChHHhccChhhcCCCCCCCCCC Confidence 3467789999999999999999999754211 00000000000 000000 1 Q sequence1 53 GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRR 132 (184) Q Consensus 53 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~ 132 (184) .....+.+||+||++.+...+......+|++++|+|++.....+.. +.+.. .. ....|+++++||+|+........ T Consensus 103 ~~~~~itliD~PGh~~~~~~~i~~~~~~D~~IlVida~~g~~~qt~-e~l~~-~~--~~~~~iIVvlnK~Dl~~~~~~~~ 178 (616) T 5IZM_A 103 EPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSA-ECLVI-GQ--IACQKLVVVLNKIDLLPEGKRQA 178 (616) T ss_dssp -CEEEEEEEECCCCGGGHHHHHHHTTSCSEEEEEEESSSCSCHHHH-HHHHH-HH--HHCSEEEEEEECCSSSCTTTHHH T ss_pred CCceEEEEEeCCCCHHHHHHHHHHHhhCCEEEEEEECCCCCChHHH-HHHHH-HH--HhCCEEEEEEecccCCChHHHHH Confidence 1235789999999988766666677789999999998864322211 11211 11 12568999999999876432111 Q sequence1 133 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK----------DGVREVFEMATR 179 (184) Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~----------~~i~~~~~~~~~ 179 (184) ............ ... .......++++|+..+ .++.++++++.. T Consensus 179 ~~~~i~~~l~~~--l~~--~~~~~~~iv~vSa~~g~~~~~~~~~~~gi~~L~~~L~~ 231 (616) T 5IZM_A 179 AIDKMTKKMQKT--LEN--TKFRGAPIIPVAAKPGGPEAPETEAPQGIPELIELLTS 231 (616) T ss_dssp HHHHHHHHHHHH--HHT--SSCTTCCEEECBSCSCC-------CCBSHHHHHHHHHH T ss_pred HHHHHHHHHHHH--HHc--cCCCCCCEEEEecCCCCCCCCcccCCcCHHHHHHHHHh Confidence 111111100000 000 0111256788999988 677777776654
##### No 446 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1D2E_D ELONGATION FACTOR TU (EF-TU); G-PROTEIN, BETA-BARREL, RNA BINDING PROTEIN; HET: GDP; 1.94A {Bos taurus} SCOP: c.37.1.8, b.43.3.1, b.44.1.1 Probab=99.02 E-value=3.1e-13 Score=102.31 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=70.9 Template_Neff=10.600 Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPE----------------VYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD 70 (184) Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 70 (184) +..+|+++|..++|||||+++|....... ...... ...............+.+||+||+..+. T Consensus 2 ~~~~i~v~G~~~sGKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~liD~pG~~~~~ 80 (397) T 1D2E_D 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGI-TINAAHVEYSTAARHYAHTDCPGHADYV 80 (397) T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHHSSCCCCCHHHHHTCCEEEETTE-EEECEEEEEEETTEEEEEEECSSHHHHH T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHcCCCceeeeHHHHhcCHHHHHcCc-eeEEeEEEEEcCCcEEEEEeCCCChHHH Confidence 46789999999999999999987631100 000000 0000001111223467899999998877 Q sequence1 71 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRND 127 (184) Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~~vv~nK~D~~~~ 127 (184) ..+......+|++++|+|..+.. .... ..+...+.. ...| +++++||+|+... T Consensus 81 ~~~~~~~~~~d~~ilvvd~~~~~-~~~~-~~~l~~~~~--~~~~~iivvvnK~D~~~~ 134 (397) T 1D2E_D 81 KNMITGTAPLDGCILVVAANDGP-MPQT-REHLLLARQ--IGVEHVVVYVNKADAVQD 134 (397) T ss_dssp HHHHHTSSCCSEEEEEEETTTCS-CHHH-HHHHHHHHH--TTCCCEEEEEECTTTCCC T ss_pred hHHHHhhcCCCEEEEEEeCCCCC-ChhH-HHHHHHHHH--hCCCEEEEEEecccCCCh Confidence 66666778899999999987642 1111 112222221 2466 8899999998753
##### No 447 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5TV2_A Ornithine aminotransferase, mitochondrial (E.C.2.6.1.13); GTP-binding domain, domain II, Structural; 1.6A {Vibrio vulnificus} Probab=99.01 E-value=3.2e-13 Score=102.33 Aligned_cols=119 Identities=17% Similarity=0.056 Sum_probs=62.1 Template_Neff=11.000 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP--------------------TV---FENY-VADIEVDGKQVELA 59 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~--------------------t~---~~~~-~~~~~~~~~~~~~~ 59 (184) ......+|+++|..++|||||++++..........+ +. .... ............+. T Consensus 6 ~~~~~~~i~iiG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (405) T 5TV2_A 6 PIERYRNIGICAHVDAGKTTTTERILFYTGLSHKIGEVHDGAATMDWMEQEQERGITITSAATTTFWRGMEAQFQDHRVN 85 (405) T ss_dssp CGGGEEEEEEEC-----CHHHHHHHHHHHHHHC-------------------------CCSEEEEEECCTTSCSCCEEEE T ss_pred chhhceEEEEEecCCCCchHHHHHHHHHcCCccccccccCCceeeechHHHHHhCeEEeccceeeeeccchhhhcCcEEE Confidence 345678999999999999999999874321100000 00 0000 00000011235789 Q sequence1 60 LWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184) Q Consensus 60 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184) +||+||+..+...+..++..+|++++|+|.++.... .....+ .... ....|+++++||+|+.. T Consensus 86 l~DtpG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~~-~~~~~l-~~~~--~~~~~~ivv~nK~D~~~ 148 (405) T 5TV2_A 86 IIDTPGHVDFTIEVERSLRVLDGAVVVFCGSSGVEP-QSETVW-RQAD--KYHVPRMVFVNKMDRAG 148 (405) T ss_dssp EECCC-------CHHHHHHHCSEEEEEEETTTCC----CHHHH-HHHH--HTTCCEEEEEECTTSTT T ss_pred EEeCCCCcchHHHHHHHHhhCCEEEEEEEcCCCCCh-hHHHHH-HHHH--HhCCCEEEEEeCcccCC Confidence 999999988777777778889999999998863221 111112 2121 13578899999999865
##### No 448 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >4ZCI_A GTP-binding protein TypA/BipA; BipA, GTPase, Nucleotide, GTP-BINDING PROTEIN; HET: NCO; 2.627A {Escherichia coli (strain K12)} Probab=99.01 E-value=3.5e-13 Score=107.78 Aligned_cols=117 Identities=15% Similarity=0.043 Sum_probs=73.3 Template_Neff=8.300 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-T---V----------FEN-YVADIEVDGKQVELALWDTAGLEDYD 70 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~-t---~----------~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~ 70 (184) ....+|+++|..++|||||+++|+.......... . . ... .............+.+||+||+.++. T Consensus 37 ~~~rnI~IiGhvd~GKTTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~E~ergiTi~~~~~~~~~~~~~inliDTPGh~df~ 116 (635) T 4ZCI_A 37 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 116 (635) T ss_dssp CCEEEEEEEECTTSCHHHHHHHHHHTSCC------------------------CCCSEEEEEETTEEEEEEECCCSSCCS T ss_pred hhCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCccccceeeccchhhHhhCCcceeeEEEEEeCCeEEEEEeCCCcchhH Confidence 4557899999999999999999886432110000 0 0 000 00011111123578999999999888 Q sequence1 71 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184) Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184) ..+...+..+|++++|+|+.+... ......+..... ...|+++++||+|+.. T Consensus 117 ~ev~~~l~~~D~aILVVDa~eg~~-~qt~~~l~~a~~---~~l~~IvviNKiD~~~ 168 (635) T 4ZCI_A 117 GEVERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFA---YGLKPIVVINKVDRPG 168 (635) T ss_dssp SHHHHHHTTCSEEEEEEETTTBSC-GGGHHHHHHHHH---TTCCEEEEEECTTSTT T ss_pred HHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCcEEEEeCCCCCC Confidence 778888889999999999876321 122222222221 2567889999999865
##### No 449 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2J3E_A T7I23.11 PROTEIN; ATTOC33(R130A), DIMERIZATION, GTPASE, PROTEIN TRANSPORT; HET: GDP; 3.2A {ARABIDOPSIS THALIANA} Probab=99.00 E-value=4e-13 Score=95.46 Aligned_cols=122 Identities=15% Similarity=0.062 Sum_probs=70.5 Template_Neff=10.800 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYP------- 78 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~------- 78 (184) ....+|+++|..|+|||++++++.............................+.+||+||............. T Consensus 33 ~~~~~i~v~G~~g~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~pG~~~~~~~~~~~~~~~~~~~~ 112 (249) T 2J3E_A 33 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 112 (249) T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHSSSCSCCCSCCSCCCSCEEEEEEETTEEEEEEECCCSBCSSSBCHHHHHHHHHHTS T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCceecCCCCCCceeeEEEEEeeCCEEEEEEECCCCcCCCCCcHHHHHHHHHHHh Confidence 5678999999999999999999987654322111100111111111123457889999997654322222222 Q sequence1 79 --DTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 127 (184) Q Consensus 79 --~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~~vv~nK~D~~~~ 127 (184) .+|++++|++.+...........+..+.... ....|+++++||.|.... T Consensus 113 ~~~~d~il~v~d~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 165 (249) T 2J3E_A 113 NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 165 (249) T ss_dssp SCCBCEEEEEEETTCCCCCTHHHHHHHHHHHHSCHHHHHTEEEEEECTTCCCT T ss_pred cCCccEEEEEeeCCccCCCHHHHHHHHHHHHHHChhHHhcEEEEEeCccCCCC Confidence 7899999999875321122211121111111 123789999999998764
##### No 450 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >1ZUN_B Sulfate adenylyltransferase subunit 2 (E.C.2.7.7.4); beta barrel, switch domain, heterodimer; HET: GDP, AGS; 2.7A {Pseudomonas syringae} SCOP: b.43.3.1, c.37.1.8, b.44.1.1 Probab=98.99 E-value=4.2e-13 Score=102.74 Aligned_cols=158 Identities=17% Similarity=0.107 Sum_probs=88.3 Template_Neff=10.500 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP------------TVFENY--------------------VADIEVD 52 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~------------t~~~~~--------------------~~~~~~~ 52 (184) ..+.++|+++|..++|||||+++|+.......... .....+ ....... T Consensus 21 ~~~~~~i~i~G~~~sGKSTLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~ 100 (434) T 1ZUN_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434) T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE T ss_pred cCCCEEEEEEeCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCCchHHHHHHcCcHHHHhcCceeEeeeeEee Confidence 45678999999999999999999876532110000 000000 0000111 Q sequence1 53 GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRR 132 (184) Q Consensus 53 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~ 132 (184) .....+.+||+||++.+...+...+..+|++++|+|........ . ......... ....++++++||+|+....... T Consensus 101 ~~~~~~~iiD~pG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~-~-~e~~~~~~~-~~~~~iivv~nK~D~~~~~~~~- 176 (434) T 1ZUN_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-T-RRHSYIASL-LGIKHIVVAINKMDLNGFDERV- 176 (434) T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-H-HHHHHHHHH-TTCCEEEEEEECTTTTTSCHHH- T ss_pred cCCceEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECCCCCCHH-H-HHHHHHHHH-hCCCEEEEEEeCCCCCCCCHHH- Confidence 12346789999999888777777778899999999987532111 1 111111211 1234689999999987522110 Q sequence1 133 ELAKMKQEPVKPEEGRDMANRI----GAFGYMECSAKTKDGVREV 173 (184) Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~~i~~~ 173 (184) ..... .....+.... ....++++|+.++.|+.++ T Consensus 177 -~~~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 214 (434) T 1ZUN_B 177 -FESIK------ADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434) T ss_dssp -HHHHH------HHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC T ss_pred -HHHHH------HHHHHHHHHcCCCcccCeEEEcCCCCCcccccc Confidence 00000 0000011111 1256788999999888764
##### No 451 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >5IZL_A Selenocysteine-specific elongation factor; elongation factor, selenocysteine, selenocysteine tRNA; HET: GCP; 2.72A {Homo sapiens} Probab=98.99 E-value=4.4e-13 Score=107.03 Aligned_cols=168 Identities=17% Similarity=0.174 Sum_probs=93.9 Template_Neff=8.800 Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFP-------EVYVPTVFENY-VADIEV-----------------------D 52 (184) Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~-------~~~~~t~~~~~-~~~~~~-----------------------~ 52 (184) .....++|+++|..++|||||+++|...... ........... ...+.. . T Consensus 23 ~~~~~~~V~vlG~~~sGKSTLi~~L~~~~~~~~~d~~~~~~~~giTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (616) T 5IZL_A 23 GRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPG 102 (616) T ss_dssp CCEEEEEEEEEESSSSSHHHHHHHHHHHC-----------CCCCCCCSCEEEEEEEECCGGGGGGCC-----------CC T ss_pred CCCccEEEEEEcCCCCCHHHHHHHHhcccchhhhhcChHHHHcCceeEecceeeecCCChHHhccChhhcCCCCCCCCCC Confidence 3466789999999999999999999765211 00000000000 000000 1 Q sequence1 53 GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRR 132 (184) Q Consensus 53 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~ 132 (184) .....+.+||+||+..+...+......+|++++|+|++.....+.. +.+.. .. ....|+++++||+|+........ T Consensus 103 ~~~~~itliDtPGh~~~~~~~i~~~~~~D~~IlVvda~~g~~~qt~-e~l~~-~~--~~~~~iIvvlNK~Dl~~~~~~~~ 178 (616) T 5IZL_A 103 EPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSA-ECLVI-GQ--IACQKLVVVLNKIDLLPEGKRQA 178 (616) T ss_dssp CCEEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH-HHHHH-HH--HHCSEEEEEEECCTTSCSTTHHH T ss_pred CCceEEEEEeCCCCHHHHHHHHHHHhhCCEEEEEEECCCCCChHHH-HHHHH-HH--HhCCEEEEEEecccCCChHHHHH Confidence 1235789999999987766666667789999999998864321111 11211 11 12568999999999876322111 Q sequence1 133 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK----------DGVREVFEMATR 179 (184) Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~----------~~i~~~~~~~~~ 179 (184) .+......... .... ......+++++|+.++ .++..+++++.. T Consensus 179 ~~~~i~~~l~~--~l~~--~~~~~~~iv~vSa~~g~~~~~~~~~~~gi~~Ll~~L~~ 231 (616) T 5IZL_A 179 AIDKMTKKMQK--TLEN--TKFRGAPIIPVAAKPGGPEAPETEAPQGIPELIELLTS 231 (616) T ss_dssp HHHHHHHHHHH--HTSS--SSCTTCCEEECBSSCSCC----CCCCBSHHHHHHHHHH T ss_pred HHHHHHHHHHH--HHHc--cCCCCCCEEEeeCCCCCCCCCcccCCCCHHHHHHHHHh Confidence 11111110000 0000 0111256788999887 677777776554
##### No 452 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3P26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational; 2.5A {Saccharomyces cerevisiae} Probab=98.99 E-value=4.6e-13 Score=103.95 Aligned_cols=162 Identities=14% Similarity=0.143 Sum_probs=85.8 Template_Neff=10.200 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPE-------------------------------VYVPTVFENYVADIEVDG 53 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~ 53 (184) ....++|+++|..++|||||+++|+...... ......... ........ T Consensus 30 ~~~~~~i~vvG~~~sGKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~-~~~~~~~~ 108 (483) T 3P26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVS-ICTSHFST 108 (483) T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCC-CCEEEEEC T ss_pred cCCCeEEEEEeCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCchHHHHHhcCChhHHhcCeEEE-eeEeeeec Confidence 3567899999999999999999987532100 000000000 00001111 Q sequence1 54 KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLEN------IPEKWTPEVKHFCPNVPIILVGNKKDLRND 127 (184) Q Consensus 54 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~ 127 (184) ....+.+||+||+.++...+..+...+|++++|+|+... .+.. ....+....... ...++++++||+|+... T Consensus 109 ~~~~i~liDtPG~~~~~~~~~~~~~~~d~~ilvvd~~~~-~~e~~~~~~~~~~~~l~~~~~~-~~~~iivv~nK~D~~~~ 186 (483) T 3P26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN-AFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDW 186 (483) T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC-------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTT T ss_pred CCceEEEEeCCCchHHHHHHHHHHhcCCEEEEEEECCCc-ccccCCCCChhHHHHHHHHHHh-CCCeEEEEEECccCCCc Confidence 234678999999988877777777899999999998764 1111 111111111111 12348899999998753 Q sequence1 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREV 173 (184) Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 173 (184) ... ......... . ..............++++|+.++.|+.++ T Consensus 187 ~~~--~~~~~~~~l-~-~~l~~~~~~~~~~~~i~iSa~~g~~i~~~ 228 (483) T 3P26_A 187 SQQ--RFEEIKSKL-L-PYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483) T ss_dssp CHH--HHHHHHHHH-H-HHHHHHTCCGGGEEEEECCSSSCTTSSSS T ss_pred cHH--HHHHHHHHH-H-HHHHHcCCCccccEEEEccccCCCceeec Confidence 211 000000000 0 00000000001246788999998888553
##### No 453 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3DEF_A T7I23.11 protein (E.C.3.6.5.2); chloroplast, Toc33, GTPase, HYDROLASE; HET: GDP; 1.96A {Arabidopsis thaliana} Probab=98.98 E-value=5.1e-13 Score=95.72 Aligned_cols=122 Identities=15% Similarity=0.061 Sum_probs=70.2 Template_Neff=10.500 Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSY-------- 77 (184) Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~-------- 77 (184) ....+|+++|..|+|||++++++.+...........................+.+||+||............ T Consensus 34 ~~~~~i~v~G~~g~GKSslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~ 113 (262) T 3DEF_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262) T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccccCCCCCCcceeEEEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHh Confidence 567899999999999999999998665432211111111111111122345789999999764322211111 Q sequence1 78 -PDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 127 (184) Q Consensus 78 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~~vv~nK~D~~~~ 127 (184) ..++++++|++.+...........+..+.... ....|+++|+||.|.... T Consensus 114 ~~~~~~il~v~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 166 (262) T 3DEF_A 114 NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262) T ss_dssp TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS T ss_pred cCCCCEEEEEeeccccCCCHHHHHHHHHHHHHHChhhcCCEEEEEecHhhCCc Confidence 26889999999875322222212222111111 124789999999998764
##### No 454 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >3T34_B Dynamin-related protein 1A, LINKER, Dynamin-related; dynamin-like protein 1A, GTPase, membrane; HET: GDP, ALF; 2.405A {Arabidopsis thaliana, synthetic, Arabidopsis thaliana} Probab=98.98 E-value=5.1e-13 Score=99.52 Aligned_cols=69 Identities=22% Similarity=0.190 Sum_probs=44.6 Template_Neff=11.300 Q sequence1 57 ELALWDTAGLED-------------YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 123 (184) Q Consensus 57 ~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D 123 (184) .+.+||+||... +......++..++++++|++.............+...+. ....|+++|+||+| T Consensus 137 ~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiV~tk~D 214 (360) T 3T34_B 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVD--PSGDRTFGVLTKID 214 (360) T ss_dssp CCEEEECCCBCSSCCTTCCSTHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHHC--TTCTTEEEEEECGG T ss_pred CeEEEeCCCCccCCCCCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCCCChhhchHHHHHHHhC--CCCCcEEEEEechh Confidence 788999999753 234555667788999999987653211111112222221 23578999999999 Q sequence1 124 LRND 127 (184) Q Consensus 124 ~~~~ 127 (184) .... T Consensus 215 ~~~~ 218 (360) T 3T34_B 215 LMDK 218 (360) T ss_dssp GCCT T ss_pred hcCC Confidence 9864
##### No 455 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2QAG_C Septin-2, Septin-6, Septin-7; Cell cycle, Cell division, GTP-binding; HET: GDP, GTP; 4.0A {Homo sapiens} Probab=98.97 E-value=6.2e-13 Score=101.50 Aligned_cols=160 Identities=15% Similarity=0.100 Sum_probs=66.8 Template_Neff=10.200 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-------V--ADIEVDGKQVELALWDTAGLEDYDR---- 71 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-------~--~~~~~~~~~~~~~i~D~~g~~~~~~---- 71 (184) ....++|+++|.+|+|||||++.|.+........+...... . ......+..+.+.+|||||...... T Consensus 28 ~~~~~~I~vvG~~g~GKSs~in~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtpG~~~~~~~~~~ 107 (418) T 2QAG_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418) T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSC----C-CCE-----EEEE------EEEEEECC----------- T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCCCCccceEEEEEEEEEEeeCCEEEEEEEEeCCCCCCCCCcccc Confidence 45678999999999999999999987654322111110000 0 0111122334589999999543210 Q sequence1 72 ----------LRPLSY-------------PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128 (184) Q Consensus 72 ----------~~~~~~-------------~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~ 128 (184) .+..++ ..+++++++++.+... +......+...+ ....|+++|+||+|..... T Consensus 108 ~~~i~~~i~~~~~~~~~~~~~~~r~~~~d~~~~~~l~~i~~~~~~-~~~~~~~~l~~l---~~~~~viiV~tK~D~~~~~ 183 (418) T 2QAG_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRL---HEKVNIIPLIAKADTLTPE 183 (418) T ss_dssp CHHHHHHHHHHHHHHTTTSCCCCC---CCC-CCEEEEECCC-CCS-CCHHHHHHHHHH---TTTSEEEEEEESTTSSCHH T ss_pred HHHHHHHHHHHHHHHHHHHhchhhcccCCCceeEEEEEeCCCCCC-CCHHHHHHHHHH---hcCCCEEEEEeccCCCCHH Confidence 001111 1277788887775322 222111122222 2358899999999987543 Q sequence1 129 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179 (184) Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~ 179 (184) ........ ........ ...++.+|+..+.++..++.++.. T Consensus 184 ~~~~~~~~----------i~~~l~~~-~~~~~~~s~~~~~~~~~~~~~l~~ 223 (418) T 2QAG_C 184 ECQQFKKQ----------IMKEIQEH-KIKIYEFPETDDEEENKLVKKIKD 223 (418) T ss_dssp HHHHHHHH----------HHHHHHHH-TCCCCCCC---------------- T ss_pred HHHHHHHH----------HHHHHHHC-CCCeeeccccCCCChHHHHHHHHH Confidence 21110000 00011111 245667777777666666555443
##### No 456 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >2OHF_A GTP-binding protein 9; ATPase GTPase P-loop; HET: ACP; 2.7A {Homo sapiens} Probab=98.96 E-value=6.8e-13 Score=100.73 Aligned_cols=88 Identities=19% Similarity=0.127 Sum_probs=48.7 Template_Neff=9.200 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-TVFENYVADIEVDGKQ---------------VELALWDTAGLE- 67 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~- 67 (184) ....++|+++|.+++|||||++.+++........+ ++.......+...+.. ..+.+||+||.. T Consensus 19 ~~~~~~I~ivG~~~~GKSTl~n~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 98 (396) T 2OHF_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396) T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--- T ss_pred CCCCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccCCcEEEEcCCCHHHHHHHhhcCCccccCcEEEEEEcCCCCC Confidence 34568999999999999999999986544221111 1111111111221111 348899999973 Q sequence1 68 ------DYDRLRPLSYPDTDVILMCFSIDSP 92 (184) Q Consensus 68 ------~~~~~~~~~~~~~~~~i~v~d~~~~ 92 (184) .+...+...+..+|++++|+++.+. T Consensus 99 ~~~~~~~~~~~~l~~ir~aD~ii~Vvd~~~~ 129 (396) T 2OHF_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396) T ss_dssp --------CCHHHHHHHTSSSEEEEEEC--- T ss_pred CcccCcChHHHHHHHHhhCCEEEEEEecCCC Confidence 2334455556789999999998753
##### No 457 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6MQ9_A Septin-12; cytoskeleton component septin GTPase spermatogenesis; HET: GNP; 1.86A {Homo sapiens} Probab=98.96 E-value=7.6e-13 Score=96.57 Aligned_cols=120 Identities=16% Similarity=0.130 Sum_probs=69.2 Template_Neff=10.000 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-------N--YVADIEVDGKQVELALWDTAGLEDYDR---- 71 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~-------~--~~~~~~~~~~~~~~~i~D~~g~~~~~~---- 71 (184) ....++|+++|..|+|||||++++..........+.... . .......++..+.+.+||+||...... T Consensus 21 ~~~~~~I~vvG~~g~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~DtpG~~~~~~~~~~ 100 (295) T 6MQ9_A 21 MGFEFNIMVVGQSGLGKSTMVNTLFKSKVWKSNPPGLGVPTPQTLQLHSLTHVIEEKGVKLKLTVTDTPGFGDQINNDNC 100 (295) T ss_dssp --CEEEEEEEEBTTSSHHHHHHHHHHCTTSSCCCCC----CCCCCSCEEEEEEEEETTEEEEEEEEECCCBCCSSBCTTT T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCeEEEEEEEEEEeeCCEEEEEEEEeCCCCCCCCCCccc Confidence 456789999999999999999999876543221111100 0 011112223345789999999754321 Q sequence1 72 ----------LRPLSYPDT--------------DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 127 (184) Q Consensus 72 ----------~~~~~~~~~--------------~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~ 127 (184) .+..++... |++++|++.+......... .+.+.+ ....|+++|+||+|.... T Consensus 101 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~~~~~i~~~l~vi~~~~~~~~~~~~-~~l~~l---~~~~~vi~Vi~K~D~~~~ 176 (295) T 6MQ9_A 101 WDPILGYINEQYEQYLQEEILITRQRHIPDTRVHCCVYFVPPTGHCLRPLDI-EFLQRL---CRTVNVVPVIARADSLTM 176 (295) T ss_dssp THHHHHHHHHHHHHHHHHHHHHCCGGGCCCCCCCEEEEEECCCSSCCCHHHH-HHHHHH---HTTSCEEEEETTGGGSCH T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCceeEEEEEeCCCCCCCCHHHH-HHHHHH---hhcCCeEEEEeccCCCCH Confidence 222233322 8999998886543222221 222222 234889999999999764 Q sequence1 128 E 128 (184) Q Consensus 128 ~ 128 (184) . T Consensus 177 ~ 177 (295) T 6MQ9_A 177 E 177 (295) T ss_dssp H T ss_pred H Confidence 3
##### No 458 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey) >6MQB_A Septin-12; cytoskeleton component septin GTPase spermatogenesis; HET: GNP; 2.12A {Homo sapiens} Probab=98.96 E-value=7.6e-13 Score=96.57 Aligned_cols=120 Identities=16% Similarity=0.130 Sum_probs=69.4 Template_Neff=10.000 Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-------N--YVADIEVDGKQVELALWDTAGLEDYDR---- 71 (184) Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~-------~--~~~~~~~~~~~~~~~i~D~~g~~~~~~---- 71 (184) ....++|+++|..|+|||||++++..........+.... . .......++..+.+.+||+||...... T Consensus 21 ~~~~~~I~vvG~~g~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~DtpG~~~~~~~~~~ 100 (295) T 6MQB_A 21 MGFEFNIMVVGQSGLGKSTMVNTLFKSKVWKSNPPGLGVPTPQTLQLHSLTHVIEEKGVKLKLTVTDTPGFGDQINNDNC 100 (295) T ss_dssp --CEEEEEEEEBTTSSHHHHHHHHHTCTTSSCCCCCCCSCCCCCCSCEEEEEEEEETTEEEEEEEEECCCBCCSSCCTTT T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCeEEEEEEEEEEeeCCEEEEEEEEeCCCCCCCCCCccc Confidence 456789999999999999999999876543221111100 0 011112223345789999999754321 Q sequence1 72 ----------LRPLSYPDT--------------DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 127 (184) Q Consensus 72 ----------~~~~~~~~~--------------~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~ 127 (184) .+..++... |++++|++.+......... .+.+.+ ....|+++|+||+|.... T Consensus 101 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~~~~~i~~~l~vi~~~~~~~~~~~~-~~l~~l---~~~~~vi~Vi~K~D~~~~ 176 (295) T 6MQB_A 101 WDPILGYINEQYEQYLQEEILITRQRHIPDTRVHCCVYFVPPTGHCLRPLDI-EFLQRL---CRTVNVVPVIARADSLTM 176 (295) T ss_dssp THHHHHHHHHHHHHHHHHHSCTTCCSSCCCCCCCEEEEEECCCSSCCCHHHH-HHHHHH---TTTSCEEEEETTGGGSCH T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCceeEEEEEeCCCCCCCCHHHH-HHHHHH---hhcCCeEEEEeccCCCCH Confidence 222233322 8999998886543222221 222222 234889999999999764 Q sequence1 128 E 128 (184) Q Consensus 128 ~ 128 (184) . T Consensus 177 ~ 177 (295) T 6MQB_A 177 E 177 (295) T ss_dssp H T ss_pred H Confidence 3