##### No 1 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5JCP_A:AUTOPDB; Probability=99.8; Identities=98%; Resolution=2.1A; MatchedRegionTemplate=1145-1323; Arf-GAP with Rho-GAP domain, ANK; RhoA, RhoGAP, ARAP3, SIGNALING PROTEIN; HET: GDP, ALF; {Homo sapiens}
----AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ-
##### No 2 #####
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>sequence1; MatchedRegionQuery=3-184
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6V6U_A:AUTOPDB; Probability=99.9; Identities=97%; Resolution=1.16A; MatchedRegionTemplate=4-185; Transforming protein RhoA (E.C.3.6.5.2); GTPase, Switch I, Switch II; HET: DIO, GDP; {Homo sapiens}
--SMAAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
##### No 3 #####
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>sequence1; MatchedRegionQuery=2-184
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3LW8_A:AUTOPDB; Probability=99.9; Identities=96%; Resolution=1.85A; MatchedRegionTemplate=-1-181; Transforming protein RhoA, IpgB2; IpgB2, RhoA, GTPase, GEF, GEF-GTPase-complex; HET: GDP; {Homo sapiens}
-LGSAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
##### No 4 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4MIT_A:AUTOPDB; Probability=99.9; Identities=51%; Resolution=2.35A; MatchedRegionTemplate=13-192; Rho family GTPase (E.C.3.6.5.2), Serine/threonine; G domain, p21 binding domain; HET: MG, GTP; {Entamoeba histolytica}
---EKPTSIKLVVVGDGAVGKTCLLISYSIRKFPEDYIPTVFDNYVVSLTAGTRQIQLALWDTAGLEEYDQLRPLSYSSASIFLICFSVTSSVSYDNVITKWHPEVIHFAPKVPIILVGT
KLDTRNDPAIVKRLTEQGMTVINTAKGEELKNRIKAVKYIECSAKTSENLKTVFDEAVKTVLM-
##### No 5 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4MIT_D:AUTOPDB; Probability=99.9; Identities=51%; Resolution=2.35A; MatchedRegionTemplate=11-190; Rho family GTPase (E.C.3.6.5.2), Serine/threonine; G domain, p21 binding domain; HET: GTP, MG; {Entamoeba histolytica}
---EKPTSIKLVVVGDGAVGKTCLLISYSIRKFPEDYIPTVFDNYVVSLTAGTRQIQLALWDTAGLEEYDQLRPLSYSSASIFLICFSVTSSVSYDNVITKWHPEVIHFAPKVPIILVGT
KLDTRNDPAIVKRLTEQGMTVINTAKGEELKNRIKAVKYIECSAKTSENLKTVFDEAVKTVLM-
##### No 6 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3SEA_A:AUTOPDB; Probability=99.9; Identities=29%; Resolution=2.0A; MatchedRegionTemplate=4-168; GTP-binding protein Rheb; globular, Hydrolase; HET: GDP, GNP; {Homo sapiens}
-----SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG
NKKDLHMERVI------------SYEEGKALAESWN-AAFLESSAKENQTAVDVFRRIILEAE--
##### No 7 #####
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>sequence1; MatchedRegionQuery=4-184
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6BCB_F:AUTOPDB; Probability=99.8; Identities=97%; Resolution=1.401A; MatchedRegionTemplate=5-185; Transforming protein RhoA, Rho guanine; Rho GTPase Guanine Nucleotide Exchange; HET: GSP, EDO; {Homo sapiens}
---MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
##### No 8 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-----CPNVP
IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6JMG_A:AUTOPDB; Probability=99.8; Identities=21%; Resolution=2.701A; MatchedRegionTemplate=26-196; DnaJ homolog subfamily C member; small GTPase, HYDROLASE; HET: GTP; {Xenopus laevis}
----KALRIKVISMGNAEVGKSCIIKRYCEKRFVPKYQATIGIDYGVTKVHIKDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGHKETFESLDGWLAEMKQELGPQGNIDNIV
FAVCANKIDSTKHRSVD------------ESEGRLWSESKG-FLYFETSAQSGEGINEMFQAFYSAIV--
##### No 9 #####
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>sequence1; MatchedRegionQuery=3-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD-GVREVFEMATRAALQA
>2CLS_A:AUTOPDB; Probability=99.8; Identities=44%; Resolution=2.31A; MatchedRegionTemplate=15-196; RHO-RELATED GTP-BINDING PROTEIN RHO6; NUCLEOTIDE-BINDING, GTP-BINDING PROTEIN RHO6, MEMBRANE; HET: GTP; {HOMO SAPIENS}
--QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGC
KTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN-
##### No 10 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2ATX_B:AUTOPDB; Probability=99.8; Identities=53%; Resolution=2.65A; MatchedRegionTemplate=22-200; small GTP binding protein TC10; TC10, GTPase, P-loop, alpha-beta, HYDROLASE; HET: GNP; {Homo sapiens}
----GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGT
QIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT-
##### No 11 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD-GVREVFEMATRAALQA
>3Q3J_B:AUTOPDB; Probability=99.8; Identities=45%; Resolution=1.971A; MatchedRegionTemplate=36-215; Plexin-A2, Rho-related GTP-binding protein Rho6; Ras-binding domain, plexin, small gtpase; HET: GNP; {Homo sapiens}
----VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGC
KTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN-
##### No 12 #####
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>sequence1; MatchedRegionQuery=7-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3X1X_A:AUTOPDB; Probability=99.8; Identities=30%; Resolution=1.0A; MatchedRegionTemplate=2-166; Ras-related protein Rap-1b; SIGNAL TRANSDUCTION, SIGNALING PROTEIN; HET: GNP; {Rattus norvegicus}
------REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVG
NKCDLEDERVVG------------KEQGQNLARQWSNCAFLESSAKSKINVNEIFYDLVRQIN--
##### No 13 #####
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>sequence1; MatchedRegionQuery=3-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2A5J_A:AUTOPDB; Probability=99.8; Identities=29%; Resolution=1.501A; MatchedRegionTemplate=15-183; Ras-related protein Rab-2B; GTPase, Signal transduction, Structural Genomics; HET: GDP; {Homo sapiens}
--PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIG
NKSDLESRRDVK------------REEGEAFAREH-GLIFMETSAKTACNVEEAFINTAKEIYR-
##### No 14 #####
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>sequence1; MatchedRegionQuery=3-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-A-DIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIIL
VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4DJT_B:AUTOPDB; Probability=99.8; Identities=23%; Resolution=1.8A; MatchedRegionTemplate=2-170; GTP-binding nuclear protein GSP1; Structural Genomics, Seattle Structural Genomics; HET: GDP; {Encephalitozoon cuniculi}
--ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLAR-WVKEFQAVVGNEAPIVV
CANKIDIKNRQKISK------------KLVMEVLKGK-NYEYFEISAKTAHNFGLPFLHLARIFT--
##### No 15 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2OV2_D:AUTOPDB; Probability=99.8; Identities=56%; Resolution=2.1A; MatchedRegionTemplate=1-177; Ras-related C3 botulinum toxin substrate; GTPase RAC3, small GTP binding; HET: EDO, GCP; {Homo sapiens}
-----MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGT
KLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL--
##### No 16 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3REF_B:AUTOPDB; Probability=99.8; Identities=46%; Resolution=1.95A; MatchedRegionTemplate=31-199; Rho-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling protein; HET: GDP, SO4; {Entamoeba histolytica}
----GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGL
KVDLRKDGSDDV----------TKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFS-
##### No 17 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG-VREVFEMATRAALQA
>1GWN_C:AUTOPDB; Probability=99.8; Identities=50%; Resolution=2.1A; MatchedRegionTemplate=46-226; RHO-RELATED GTP-BINDING PROTEIN RHOE; GTPASE, INACTIVE GTPASE, SIGNAL TRANSDUCTION; HET: GTP; {Mus musculus}
---NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC
KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN-
##### No 18 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIEV-DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-----CPNV
PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6HH2_A:AUTOPDB; Probability=99.8; Identities=27%; Resolution=1.449A; MatchedRegionTemplate=9-181; Ras-related protein Rab-7L1; Rab GTPase, membrane trafficking, SIGNALING; HET: GDP; {Homo sapiens}
---SRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGLERFTSMTRLYYRDASAAVIMFDVTNATTFSNSQR-WKQDLDSKLTLPNGEPV
PALLLANKSDLSPWAVSR-------------DQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMR-
##### No 19 #####
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>sequence1; MatchedRegionQuery=7-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3X1Z_A:AUTOPDB; Probability=99.8; Identities=30%; Resolution=1.25A; MatchedRegionTemplate=2-166; Ras-related protein Rap-1b; SIGNAL TRANSDUCTION, SIGNALING PROTEIN; HET: GNP; {Rattus norvegicus}
------REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFAAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVG
NKCDLEDERVVG------------KEQGQNLARQWSNCAFLESSAKSKINVNEIFYDLVRQIN--
##### No 20 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4U5X_A:AUTOPDB; Probability=99.8; Identities=47%; Resolution=1.9A; MatchedRegionTemplate=8-182; OsRac1; Small GTPase, Rac, Plant; HET: GOL, GNP; {Oryza sativa subsp. japonica}
-----TRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGSVVNLGLWDTAGLEDYSRLRPLSYRGADVFILSFSLISRASYENVQKKWMPELRRFAPGVPVVLVGT
KLDLREDRAYLAD--HPASSIITTEQGEELRKLIGAVAYIECSSKTQRNIKAVFDTAIKVVL--
##### No 21 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2Q3H_A:AUTOPDB; Probability=99.8; Identities=46%; Resolution=1.73A; MatchedRegionTemplate=64-243; Ras homolog gene family, member; GTPase, Structural Genomics, Structural Genomics; HET: GDP; {Homo sapiens}
---AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGT
QSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQ-
##### No 22 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG-VREVFEMATRAALQA
>1M7B_A:AUTOPDB; Probability=99.8; Identities=50%; Resolution=2.0A; MatchedRegionTemplate=24-204; Rho-related GTP-binding protein RhoE; small GTPase, SIGNALING PROTEIN; HET: GTP; {Homo sapiens}
---NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC
KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN-
##### No 23 #####
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>sequence1; MatchedRegionQuery=3-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH--FCPNVPIILV
GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2GF0_B:AUTOPDB; Probability=99.8; Identities=27%; Resolution=1.9A; MatchedRegionTemplate=5-172; GTP-binding protein Di-Ras1; DIRAS, GDP/GTP binding, GTP hydrolysis; HET: GDP; {Homo sapiens}
--PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLV
GNKCDETQREVDT-------------REAQAVAQEWK-CAFMETSAKMNYNVKELFQELLTLET--
##### No 24 #####
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>sequence1; MatchedRegionQuery=3-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD-GVREVFEMATRAALQA
>2REX_D:AUTOPDB; Probability=99.8; Identities=44%; Resolution=2.3A; MatchedRegionTemplate=11-192; Plexin-B1, Rho-related GTP-binding protein Rho6; complex, Structural Genomics Consortium, SGC; HET: GNP, UNX; {Homo sapiens}
--QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGC
KTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN-
##### No 25 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3REG_B:AUTOPDB; Probability=99.8; Identities=46%; Resolution=1.801A; MatchedRegionTemplate=37-205; Rho-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling protein; HET: GSP; {Entamoeba histolytica}
----GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGL
KVDLRKDGSDDVT----------KQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFS-
##### No 26 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2FN4_A:AUTOPDB; Probability=99.8; Identities=30%; Resolution=1.65A; MatchedRegionTemplate=28-195; Ras-related protein R-Ras; RRAS, GDP/GTP binding, GTP hydrolysis; HET: GDP; {Homo sapiens}
---PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG
NKADLESQRQVP------------RSEASAFGASH-HVAYFEASAKLRLNVDEAFEQLVRAVRK-
##### No 27 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5C2K_A:AUTOPDB; Probability=99.8; Identities=97%; Resolution=1.42A; MatchedRegionTemplate=9-188; Transforming protein RhoA,Rac GTPase-activating protein; GTPase activation, fusion protein, small; HET: GDP; {Homo sapiens}
---MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ-
##### No 28 #####
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>sequence1; MatchedRegionQuery=6-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4YON_B:AUTOPDB; Probability=99.8; Identities=57%; Resolution=1.95A; MatchedRegionTemplate=3-178; pREX1, Rac1(G12V); Protein binding; {Homo sapiens}
-----MQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT
KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV---
##### No 29 #####
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>sequence1; MatchedRegionQuery=7-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1GUA_A:AUTOPDB; Probability=99.8; Identities=30%; Resolution=2.0A; MatchedRegionTemplate=2-166; RAP1A, C-RAF1, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER; ONCOGENE PROTEIN/KINASE/EFFECTOR PROTEIN GTP-BINDING-PROTEIN, COMPLEX; HET: GNP; {Homo sapiens}
------REYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVG
NKCDLEDERVVG------------KEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN--
##### No 30 #####
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>sequence1; MatchedRegionQuery=4-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4GZL_A:AUTOPDB; Probability=99.8; Identities=58%; Resolution=2.0A; MatchedRegionTemplate=28-205; Ras-related C3 botulinum toxin substrate; Rossmann fold, GTP binding, membrane; HET: GNP; {Homo sapiens}
---FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT
KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV---
##### No 31 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5VCU_A:AUTOPDB; Probability=99.8; Identities=54%; Resolution=1.85A; MatchedRegionTemplate=9-185; Ras-related c3 botulinum toxin substrate; SSGCID, RAS, botulinum toxin, GTP; HET: GDP; {Naegleria fowleri}
-----MESIKCVVVGDGAVGKTALLIAYSSGCFPEDYVPTVFDNYNKNIPYGDGIVSIALYDTAGQEDYDRLRPLSYPDTDVFLVCFSLENPNSLENCHSKWAEELKHYNPDTPIVLVGT
KLDLKKDEEYVKKLKEKKISPVTTEQGQEMKDKIKACGYIECSAKTMENLTEAFNMAIDIAM--
##### No 32 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4RKE_A:AUTOPDB; Probability=99.8; Identities=29%; Resolution=2.0006A; MatchedRegionTemplate=2-169; GH01619p; GTP hydrolysis, hydrolase; HET: 1PE, GNP; {Drosophila melanogaster}
---SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGLEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIG
NKSDLDSRREVK------------KEEGEAFAREH-GLVFMETSARTAANVEEAFINTAKEIYE-
##### No 33 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH----FCPNVPI
ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5LDD_C:AUTOPDB; Probability=99.8; Identities=26%; Resolution=2.496A; MatchedRegionTemplate=11-183; Mon1, Ccz1, Rab small monomeric; heterodimeric GEF protein, endosomal maturation; HET: SO4; {Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)}
----KKVLLKVIILGDSGVGKTSLMNQYVNKKFSASYKATIGADFLTREVMVDDRQVTMQLWDTAGQERFQSLGVAFYRGADCCVLVFDVNNAKSFDALDSWRDEFLIQASPRDPENFPF
VVLGIKIDVEESKRVIS-----------TKRAQTFCQSKGGIPYFETSAKEAINVEEAFQVIARNALM-
##### No 34 #####
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>sequence1; MatchedRegionQuery=3-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5YOZ_A:AUTOPDB; Probability=99.8; Identities=26%; Resolution=NMR; MatchedRegionTemplate=10-176; Rab5a; Rab, GTPase, early endocytosis, GTP; {Leishmania donovani}
--LMEATSAKIVMLGESGAGKSSIALRFTRNEFLANQETTIGAAFLSKTVMIDGRALKYEIWDTAGLERFRSLAPIYYRGASGALVVYDITNSESLKKAQTWIKELRANADPSLIIVLVG
NKKDLGSLRQVS------------FEDGQRLAAEEQLAAFYEASAKDNNNVEQVFLDLAAK----
##### No 35 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG-VREVFEMATRAALQA
>2V55_D:AUTOPDB; Probability=99.8; Identities=50%; Resolution=3.705A; MatchedRegionTemplate=38-217; RHO-ASSOCIATED PROTEIN KINASE 1 (E.C.2.7.11.1); SERINE/THREONINE-PROTEIN KINASE, RHOE, KINASE, ROCK-I; HET: GTP, ANP; {HOMO SAPIENS}
----QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC
KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN-
##### No 36 #####
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>sequence1; MatchedRegionQuery=4-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3B13_B:AUTOPDB; Probability=99.8; Identities=57%; Resolution=3.006A; MatchedRegionTemplate=6-183; Dedicator of cytokinesis protein 2; protein-ptotein complex, lymphocyte chemotaxis, signal; {Homo sapiens}
---SGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT
KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV---
##### No 37 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5UB8_A:AUTOPDB; Probability=99.8; Identities=29%; Resolution=2.35A; MatchedRegionTemplate=20-184; Likely rab family GTP-binding protein; G-PROTEIN, RAB, GDP, P-LOOP, GTPASE; HET: GDP; {Candida albicans (strain SC5314 / ATCC MYA-2876)}
-----EYLYKIVLIGDSGVGKSNLLSRFTRDEFNLESRSTIGVEFATRTLEIDGKRVKAQIWDTAGQERYRAITSAYYRGAVGALIVYDIAKTESYESVSRWLKELKEHADANIIIELVG
NKSDLDHLRAV------------PTEEAKNFAMENN-LLFTEASALSSDNVDLSFHQLLKNIY--
##### No 38 #####
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>sequence1; MatchedRegionQuery=7-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5DIS_B:AUTOPDB; Probability=99.8; Identities=27%; Resolution=2.85A; MatchedRegionTemplate=9-170; Exportin-1, GTP-binding nuclear protein Ran; FG-repeats, Nucleoporin, Nup214, Exportin, transport; HET: GTP, GLC, PRO; {Homo sapiens}
------VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCG
NKVDIKDRKVKAK--------------SIVFHRK-KNLQYYDISAKSNYNFEKPFLWLARKLIG-
##### No 39 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6P0I_B:AUTOPDB; Probability=99.8; Identities=32%; Resolution=1.18A; MatchedRegionTemplate=20-187; Ras-related protein Ral-A; Ral GTPase, RalA, covalent inhibitor; HET: NL7, GOL, GDP, EDO; {Homo sapiens}
---NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG
NKSDLEDKRQVS------------VEEAKNRAEQW-NVNYVETSAKTRANVDKVFFDLMREIRA-
##### No 40 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1Z0F_A:AUTOPDB; Probability=99.8; Identities=29%; Resolution=2.15A; MatchedRegionTemplate=17-184; RAB14, member RAS oncogene family; Rab GTPase, Rab14, Vesicular trafficking; HET: GDP; {Homo sapiens}
---NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG
NKADLEAQRDVT------------YEEAKQFAEEN-GLLFLEASAKTGENVEDAFLEAAKKIYQ-
##### No 41 #####
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>sequence1; MatchedRegionQuery=6-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1MH1_A:AUTOPDB; Probability=99.8; Identities=58%; Resolution=1.38A; MatchedRegionTemplate=3-180; RAC1, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER; GTP-BINDING, GTPASE, SMALL G-PROTEIN, RHO; HET: GNP; {Homo sapiens}
-----PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT
KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC-
##### No 42 #####
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>sequence1; MatchedRegionQuery=3-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH--FCPNVPIILV
GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2GF0_C:AUTOPDB; Probability=99.8; Identities=28%; Resolution=1.9A; MatchedRegionTemplate=8-175; GTP-binding protein Di-Ras1; DIRAS, GDP/GTP binding, GTP hydrolysis; HET: GDP; {Homo sapiens}
--PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLV
GNKCDETQREVDTR-------------EAQAVAQEWK-CAFMETSAKMNYNVKELFQELLTLET--
##### No 43 #####
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>sequence1; MatchedRegionQuery=3-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3BWD_D:AUTOPDB; Probability=99.8; Identities=49%; Resolution=1.53A; MatchedRegionTemplate=7-185; Rac-like GTP-binding protein ARAC6; G domain, GTP-binding, Lipoprotein, Membrane; HET: GDP; {Arabidopsis thaliana}
--MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGT
KLDLRDDKQFFID--HPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ-
##### No 44 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4LHW_B:AUTOPDB; Probability=99.8; Identities=30%; Resolution=1.55A; MatchedRegionTemplate=5-171; Ras-related protein Rab-8A; Small GTPase, PROTEIN TRANSPORT; HET: GNP; {Homo sapiens}
----HDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG
NKCDVNDKRQVS------------KERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKA-
##### No 45 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2J1L_A:AUTOPDB; Probability=99.8; Identities=51%; Resolution=2.5A; MatchedRegionTemplate=45-223; RHO-RELATED GTP-BINDING PROTEIN RHOD (E.C.3.6.5.2); GTPASE, MEMBRANE, GTP-BINDING, PRENYLATION, HYDROLASE; HET: GDP; {HOMO SAPIENS}
----GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGC
KTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALS-
##### No 46 #####
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>sequence1; MatchedRegionQuery=3-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2J0V_B:AUTOPDB; Probability=99.8; Identities=48%; Resolution=1.78A; MatchedRegionTemplate=1-177; RAC-LIKE GTP-BINDING PROTEIN ARAC7; NUCLEOTIDE-BINDING PROTEIN, ROP9, ATRAC7, MEMBRANE; HET: GDP; {ARABIDOPSIS THALIANA}
--MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGT
KLDLRDDKGYLADHTN----VITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ-
##### No 47 #####
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>sequence1; MatchedRegionQuery=7-184
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3RAP_R:AUTOPDB; Probability=99.8; Identities=33%; Resolution=2.2A; MatchedRegionTemplate=2-167; G PROTEIN RAP2A; G PROTEIN, RAS, GTPASE, RAP2; HET: GTP; {Homo sapiens}
------REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVG
NKVDLESEREVS------------SSEGRALAEEWG-CPFMETSAKSKTMVDELFAEIVRQMNYA
##### No 48 #####
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>sequence1; MatchedRegionQuery=7-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILV
GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2KE5_A:AUTOPDB; Probability=99.8; Identities=33%; Resolution=NMR; MatchedRegionTemplate=13-178; Ras-related protein Ral-B; Ral, Cancer, Signalling, G protein; HET: MG, GNP; {Homo sapiens}
------ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVV
GNKSDLEERRQVP------------VEEARSKAEEWG-VQYVETSAKTRANVDKVFFDLMREIRT-
##### No 49 #####
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>sequence1; MatchedRegionQuery=3-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDG-KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVP
IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6FF8_A:AUTOPDB; Probability=99.8; Identities=22%; Resolution=2.13A; MatchedRegionTemplate=22-196; Ras-related protein Rab-32; small GTPase, Rab, GTP, vesicle; HET: GTP; {Homo sapiens}
--ETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGLERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIP
AVLLANKCDQNKDSSQS------------PSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILV-
##### No 50 #####
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>sequence1; MatchedRegionQuery=8-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1D5C_A:AUTOPDB; Probability=99.8; Identities=29%; Resolution=2.3A; MatchedRegionTemplate=11-171; RAB6 GTPASE; G-PROTEIN, GTPASE, RAB, RAB6, VESICULAR; HET: MSE, GDP; {Plasmodium falciparum}
-------KYKLVFLGEQAVGKTSIITRFMYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVG
NKTDLGDLRKVT------------YEEGMQKAQEY-NTMFHETSAKAGHNIKVLFKKTASK----
##### No 51 #####
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>sequence1; MatchedRegionQuery=4-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6L6O_A:AUTOPDB; Probability=99.8; Identities=26%; Resolution=1.8A; MatchedRegionTemplate=21-186; Rab5a; Intracellular trafficking, GTPase, ENDOCYTOSIS; HET: GDP; {Leishmania donovani}
---MEATSAKIVMLGESGAGKSSIALRFTRNEFLANQETTIGAAFLSKTVMIDGRALKYEIWDTAGLERFRSLAPIYYRGASGALVVYDITNSESLKKAQTWIKELRANADPSLIIVLVG
NKKDLGSLRQVS------------FEDGQRLAAEEQLAAFYEASAKDNNNVEQVFLDLAAK----
##### No 52 #####
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>sequence1; MatchedRegionQuery=3-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1YU9_A:AUTOPDB; Probability=99.8; Identities=29%; Resolution=2.07A; MatchedRegionTemplate=3-171; GTP-binding protein; Rab GTPase, Rab4, vesicular trafficking; HET: GNP, SO4; {Homo sapiens}
--ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG
NKKDLDADREVT------------FLEASRFAQEN-ELMFLETSALTGEDVEEAFVQCARKILN-
##### No 53 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4M8N_F:AUTOPDB; Probability=99.8; Identities=30%; Resolution=3.294A; MatchedRegionTemplate=4-171; PlexinC1 Intracellular Region, Ras-related protein; GTPase, GTPase activating protein, Rap; HET: GDP, AF3; {Danio rerio}
----HMREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVG
NKCDLEDERVVG------------KEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINS-
##### No 54 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4M8N_G:AUTOPDB; Probability=99.8; Identities=30%; Resolution=3.294A; MatchedRegionTemplate=3-170; PlexinC1 Intracellular Region, Ras-related protein; GTPase, GTPase activating protein, Rap; HET: AF3, GDP; {Danio rerio}
----HMREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVG
NKCDLEDERVVG------------KEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINS-
##### No 55 #####
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>sequence1; MatchedRegionQuery=4-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2EW1_A:AUTOPDB; Probability=99.8; Identities=25%; Resolution=2.0A; MatchedRegionTemplate=25-191; Ras-related protein Rab-30; G-protein, RAB, GTP analogue, Structural; HET: GNP; {Homo sapiens}
---DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVG
NKIDLAERREVSQQ------------RAEEFSEAQ-DMYYLETSAKESDNVEKLFLDLACRLI--
##### No 56 #####
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>sequence1; MatchedRegionQuery=3-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILV
GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2FG5_A:AUTOPDB; Probability=99.8; Identities=25%; Resolution=2.801A; MatchedRegionTemplate=20-187; Ras-related protein Rab-31; G-PROTEIN, RAB, GTP ANALOGUE, Structural; HET: GNP; {Homo sapiens}
--GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLK-KWVKELKEHGPENIVMAIA
GNKCDLSDIREVP------------LKDAKEYAESIG-AIVVETSAKNAINIEELFQGISRQIP--
##### No 57 #####
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>sequence1; MatchedRegionQuery=3-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4D0G_A:AUTOPDB; Probability=99.8; Identities=31%; Resolution=2.5A; MatchedRegionTemplate=8-176; RAS-RELATED PROTEIN RAB-14, RAB11 FAMILY-INTERACTING; HYDROLASE, RAB14 GTPASE, ENDOSOMAL TRAFFICKING; HET: GTP; {HOMO SAPIENS}
--MSYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGLERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG
NKADLEAQRDVT------------YEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIYQ-
##### No 58 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3TKL_A:AUTOPDB; Probability=99.8; Identities=28%; Resolution=2.183A; MatchedRegionTemplate=18-183; Ras-related protein Rab-1A, LidA protein; Vesicle trafficking, PROTEIN TRANSPORT-PROTEIN BINDING; HET: GTP; {Homo sapiens}
----YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG
NKCDLTTKKVVD------------YTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIK--
##### No 59 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1R2Q_A:AUTOPDB; Probability=99.8; Identities=29%; Resolution=1.05A; MatchedRegionTemplate=17-182; Ras-related protein Rab-5A; RAB, GTPase, GNP, atomic resolution; HET: GOL, GNP; {Homo sapiens}
----KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG
NKADLANKRAVDF------------QEAQSYADD-NSLLFMETSAKTSMNVNEIFMAIAKKLP--
##### No 60 #####
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>sequence1; MatchedRegionQuery=3-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2WWX_A:AUTOPDB; Probability=99.8; Identities=27%; Resolution=1.5A; MatchedRegionTemplate=7-174; RAS-RELATED PROTEIN RAB-1, DRRA; GOLGI APPARATUS, PROTEIN TRANSPORT, ER-GOLGI; {HOMO SAPIENS}
--PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG
IKCDLTTKKVVD------------YTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIK--
##### No 61 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDG-KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVP
IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1KY3_A:AUTOPDB; Probability=99.8; Identities=27%; Resolution=1.35A; MatchedRegionTemplate=10-184; GTP-BINDING PROTEIN YPT7P; G PROTEIN, VESICULAR TRAFFIC, GTP; HET: GDP; {Saccharomyces cerevisiae}
---RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP
FVILGNKIDAEESKKIV-----------SEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ-
##### No 62 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK-DGVREVFEMATRAALQA
>3KKQ_A:AUTOPDB; Probability=99.8; Identities=30%; Resolution=1.2A; MatchedRegionTemplate=23-190; Ras-related protein M-Ras; GTP-binding, GTPase, SIGNALING PROTEIN; HET: GDP; {Mus musculus}
----NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA
NKVDLMHLRKV------------TRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQ-
##### No 63 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3SFV_A:AUTOPDB; Probability=99.8; Identities=28%; Resolution=1.73A; MatchedRegionTemplate=10-176; Ras-related protein Rab-1A, LidA protein; LidA-Rab Complex, Coiled-coil domain, Type; HET: GDP; {Homo sapiens}
----YDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG
NKCDLTTKKVVD------------YTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIKK-
##### No 64 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDG-KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVP
IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1KY2_A:AUTOPDB; Probability=99.8; Identities=27%; Resolution=1.6A; MatchedRegionTemplate=6-180; GTP-BINDING PROTEIN YPT7P; G PROTEIN, VESICULAR TRAFFIC, GTP; HET: GNP; {Saccharomyces cerevisiae}
---RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP
FVILGNKIDAEESKKIV-----------SEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ-
##### No 65 #####
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>sequence1; MatchedRegionQuery=4-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>7BTD_A:AUTOPDB; Probability=99.8; Identities=29%; Resolution=2.0A; MatchedRegionTemplate=4-170; GTP-binding protein Rheb; mTORC1, small GTPase, Rheb, SIGNALING; HET: GNP; {Homo sapiens}
---PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSNDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG
NKKDLHMERVIS------------YEEGKALAESWN-AAFLESSAKENQTAVDVFRRIILEAE--
##### No 66 #####
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>sequence1; MatchedRegionQuery=3-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPI
ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1S8F_B:AUTOPDB; Probability=99.8; Identities=30%; Resolution=1.77A; MatchedRegionTemplate=4002-4174; Ras-related protein Rab-9A; intracellular transport, vesicular trafficking, hemihedral; HET: GDP, BEZ; {Canis lupus familiaris}
--AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF
VILGNKIDISERQVS-------------TEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA-
##### No 67 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3MJH_A:AUTOPDB; Probability=99.8; Identities=30%; Resolution=2.03A; MatchedRegionTemplate=18-182; Ras-related protein Rab-5A (E.C.3.6.5.2), Early; PROTEIN-ZINC FINGER COMPLEX, BETA BETA; HET: GTP; {Homo sapiens}
-----ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG
NKADLANKRAVD------------FQEAQSYADDN-SLLFMETSAKTSMNVNEIFMAIAKKLP--
##### No 68 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5SZH_B:AUTOPDB; Probability=99.8; Identities=28%; Resolution=2.3A; MatchedRegionTemplate=5-171; MICAL C-terminal-like protein, Ras-related protein; Mical-cL, DUF3585, Mical, Rab effector; HET: GNP; {Homo sapiens}
----YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG
NKSDLTTKKVVDN------------TTAKEFADSLG-IPFLETSAKNATNVEQAFMTMAAEIKK-
##### No 69 #####
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>sequence1; MatchedRegionQuery=6-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4KLZ_A:AUTOPDB; Probability=99.8; Identities=27%; Resolution=2.3A; MatchedRegionTemplate=23-188; GTP-binding protein Rit1; small GTPase, molecular switch (GTPase); HET: GDP; {Homo sapiens}
-----SREYKLVMLGAGGVGKSAMTMQFISHRFPEDHDPTIEDAYKIRIRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRRSFHEVREFKQLIYRVRRTDDTPVVLVG
NKSDLKQLRQV------------TKEEGLALAREFS-CPFFETSAAYRYYIDDVFHALVREIRR-
##### No 70 #####
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>sequence1; MatchedRegionQuery=3-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5UQW_B:AUTOPDB; Probability=99.8; Identities=31%; Resolution=1.5A; MatchedRegionTemplate=18-185; GTPase KRas (E.C.3.6.5.-); KRAS, GTPase, HYDROLASE; HET: GDP; {Homo sapiens}
--GSHMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG
NKCDLPSRTVDTK-------------QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRK-
##### No 71 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4DRZ_A:AUTOPDB; Probability=99.8; Identities=29%; Resolution=2.3A; MatchedRegionTemplate=31-198; Ras-related protein Rab-14; RAS, GTPASE, GTP, ONCOGENE, RAB14; HET: GDP; {Homo sapiens}
---NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG
NKADLEAQRDVT------------YEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIYQ-
##### No 72 #####
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>sequence1; MatchedRegionQuery=3-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIEVD-GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH----FCPNVP
IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6HDU_A:AUTOPDB; Probability=99.8; Identities=22%; Resolution=1.793A; MatchedRegionTemplate=6-181; Ras-related protein Rab-38; Rab small GTPase, membrane trafficking; HET: GTP; {Homo sapiens}
--PHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGLERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVS
VVLLANKCDQGKDVLMN-N----------GLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILA-
##### No 73 #####
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>sequence1; MatchedRegionQuery=3-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3OES_A:AUTOPDB; Probability=99.8; Identities=27%; Resolution=2.301A; MatchedRegionTemplate=23-191; GTPase RhebL1; small gtpase, Structural Genomics, Structural; HET: GNP; {Homo sapiens}
--MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVG
NKADLSPEREVQ------------AVEGKKLAESWG-ATFMESSARENQLTQGIFTKVIQEIAR-
##### No 74 #####
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>sequence1; MatchedRegionQuery=3-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6BSX_B:AUTOPDB; Probability=99.8; Identities=30%; Resolution=1.65A; MatchedRegionTemplate=3-170; GTP-binding protein Rheb; mTORC1 G-protein, SIGNALING PROTEIN; HET: E7S, GDP, EDO, ACT; {Homo sapiens}
--MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG
NKKDLHMERVIS------------YEEGKALAESWN-AAFLESSAKENQTAVDVFRRIILEAE--
##### No 75 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3RWO_B:AUTOPDB; Probability=99.8; Identities=29%; Resolution=1.7A; MatchedRegionTemplate=12-179; GTP-binding protein YPT32/YPT11; GTPASES, PROTEIN-GDP COMPLEX, EXOCYTOSIS, GOLGI; HET: GDP; {Saccharomyces cerevisiae}
---DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIG
NKSDLAHLRAVP------------TDEAKNFAMEN-QMLFTETSALNSDNVDKAFRELIVAIFQ-
##### No 76 #####
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>sequence1; MatchedRegionQuery=3-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPII
LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2IWR_A:AUTOPDB; Probability=99.8; Identities=19%; Resolution=1.5A; MatchedRegionTemplate=65-232; CENTAURIN GAMMA 1; ANK REPEAT, ZINC-FINGER, GTP-BINDING, NUCLEOTIDE-BINDING; HET: CAF; {HOMO SAPIENS}
--MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALA
LVGTQDRISASSPRVV----------GDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVT-
##### No 77 #####
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>sequence1; MatchedRegionQuery=7-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1EK0_A:AUTOPDB; Probability=99.8; Identities=27%; Resolution=1.48A; MatchedRegionTemplate=6-172; GTP-BINDING PROTEIN YPT51; G PROTEIN, VESICULAR TRAFFIC, GTP; HET: GNP, GDP; {Saccharomyces cerevisiae}
------TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVG
NKIDMLQEGGERKV---------AREEGEKLAEEKG-LLFFETSAKTGENVNDVFLGIGEKIP--
##### No 78 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5CM8_B:AUTOPDB; Probability=99.8; Identities=32%; Resolution=2.6A; MatchedRegionTemplate=17-182; Ral guanine nucleotide dissociation stimulator-like; Complex G-protein Exchange Factor, signaling; {Mus musculus}
----GPALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITDDESFQATQEFREQILRVKNDESIPFLLVG
NKCDLNDKRKVPL------------SECQLRAQQ-WAVPYVETSAKTRENVDKVFFDLMREIR--
##### No 79 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-----------
--------CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4KU4_A:AUTOPDB; Probability=99.8; Identities=30%; Resolution=1.6A; MatchedRegionTemplate=17-201; Ras-3 from Cryphonectria parasitica; small G protein, GTP/GDP binding; HET: GDP; {Cryphonectria parasitica}
----GKITDKIAMLGEGGVGKTSLTVNLTKHVFSETYDPTLEDSYRRQCVIDGIPSHLEILDTAGQEEYGALREQWIRQNELFVIVFDVTRRSSFEAAERLFEEVIQTKRKLDETRRHPG
DRHPDDLPFAPSLVVLVGNKCDLDTRREVG------------TLEGSSLAKKLG-CGFVETSAKLGTNVEEAFFSVVRADRR-
##### No 80 #####
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>sequence1; MatchedRegionQuery=5-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1ZJ6_A:AUTOPDB; Probability=99.8; Identities=18%; Resolution=2.0A; MatchedRegionTemplate=14-177; ADP-ribosylation factor-like protein 5; ARL, GTP-binding, Transport Protein; HET: SO4, G3D; {Homo sapiens}
----NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN-VEE--IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFA
NKQDVKECMTV-AEISQF---------LKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL---
##### No 81 #####
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>sequence1; MatchedRegionQuery=3-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH----FCPNVPI
ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5Z2M_A:AUTOPDB; Probability=99.8; Identities=26%; Resolution=2.142A; MatchedRegionTemplate=7-179; Oxysterol-binding protein-related protein 1, Ras-related; GTPase, Effector, Complex, ENDOCYTOSIS; HET: GTP; {Mus musculus}
--SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF
VVLGNKIDLENRQVATKR-------------AQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK-
##### No 82 #####
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>sequence1; MatchedRegionQuery=2-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5SZI_A:AUTOPDB; Probability=99.8; Identities=30%; Resolution=2.85A; MatchedRegionTemplate=6-174; Ras-related protein Rab-8A, MICAL C-terminal-like; Mical-cL, DUF3585, Mical, Rab effector; HET: GNP; {Homo sapiens}
-AKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG
NKCDVNDKRQVS------------KERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIK--
##### No 83 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4RKF_B:AUTOPDB; Probability=99.8; Identities=29%; Resolution=1.5A; MatchedRegionTemplate=35-200; Ras-related protein Rab-3; GTP hydrolysis, hydrolase; HET: 1PE, GNP; {Drosophila melanogaster}
----FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGLERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVG
NKCDMEDQRVIS------------FERGRQLADQL-GVEFFETSAKENVNVKAVFERLVDIIC--
##### No 84 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1Z08_A:AUTOPDB; Probability=99.8; Identities=27%; Resolution=1.8A; MatchedRegionTemplate=19-185; Ras-related protein Rab-21; Rab GTPase, Rab21, Vesicular trafficking; HET: GNP; {Homo sapiens}
----RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVG
NKIDLEKERHVS------------IQEAESYAESV-GAKHYHTSAKQNKGIEELFLDLCKRMIE-
##### No 85 #####
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>sequence1; MatchedRegionQuery=7-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1G16_B:AUTOPDB; Probability=99.8; Identities=28%; Resolution=1.8A; MatchedRegionTemplate=20-182; RAS-RELATED PROTEIN SEC4; G protein Rab, SIGNALING PROTEIN; HET: MSE, GDP; {Saccharomyces cerevisiae}
------SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVG
NKSDMETRVVTA-------------DQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQ--
##### No 86 #####
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>sequence1; MatchedRegionQuery=7-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1G17_B:AUTOPDB; Probability=99.8; Identities=28%; Resolution=2.0A; MatchedRegionTemplate=20-182; RAS-RELATED PROTEIN SEC4; G protein Rab, SIGNALING PROTEIN; HET: GNP; {Saccharomyces cerevisiae}
------SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVG
NKSDMETRVVTA-------------DQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQ--
##### No 87 #####
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>sequence1; MatchedRegionQuery=2-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILV
GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1ZBD_A:AUTOPDB; Probability=99.8; Identities=29%; Resolution=2.6A; MatchedRegionTemplate=17-185; RABPHILIN-3A, GUANOSINE-5'-TRIPHOSPHATE; G PROTEIN, EFFECTOR, RABCDR, SYNAPTIC; HET: GTP; {Rattus norvegicus}
-SHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQ-DWSTQIKTYSWDNAQVLLV
GNKCDMEDERVVS------------SERGRQLADHLG-FEFFEASAKDNINVKQTFERLVDVIC--
##### No 88 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH----FCPNVPI
ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1WMS_B:AUTOPDB; Probability=99.8; Identities=30%; Resolution=1.25A; MatchedRegionTemplate=8-178; Ras-related protein Rab-9A; GTPase, PROTEIN TRANSPORT; HET: GDP; {Homo sapiens}
----KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF
VILGNKIDISERQVST-------------EEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA-
##### No 89 #####
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>sequence1; MatchedRegionQuery=4-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2HUP_B:AUTOPDB; Probability=99.8; Identities=27%; Resolution=2.05A; MatchedRegionTemplate=39-206; Crystal structure of human RAB43; G-PROTEIN, RAB, GDP, STRUCTURAL GENOMICS; HET: GDP; {Homo sapiens}
---QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIG
NKSDLSELREVS------------LAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI--
##### No 90 #####
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>sequence1; MatchedRegionQuery=3-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPIIL
VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK-DGVREVFEMATRAALQA
>3C5C_B:AUTOPDB; Probability=99.8; Identities=27%; Resolution=1.85A; MatchedRegionTemplate=34-204; RAS-like protein 12; ras, rasl12, gdp, gtpase, Structural; HET: GDP; {Homo sapiens}
--FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALL
LGNKLDMAQYRQVT------------KAEGVALAGRFG-CLFFEVSACLDFEHVQHVFHEAVREARR-
##### No 91 #####
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>sequence1; MatchedRegionQuery=3-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2GF9_A:AUTOPDB; Probability=99.8; Identities=31%; Resolution=1.53A; MatchedRegionTemplate=30-198; Ras-related protein Rab-3D; G-PROTEIN, RAB, Structural Genomics, Structural; HET: GDP; {Homo sapiens}
--RGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVG
NKCDLEDERVVP------------AEDGRRLADDLG-FEFFEASAKENINVKQVFERLVDVICE-
##### No 92 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK-DGVREVFEMATRAALQA
>1X1R_A:AUTOPDB; Probability=99.8; Identities=30%; Resolution=1.3A; MatchedRegionTemplate=19-186; Ras-related protein M-Ras; GTP-binding, SIGNALING PROTEIN; HET: GDP; {Mus musculus}
----NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA
NKVDLMHLRKV------------TRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQ-
##### No 93 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4FMC_B:AUTOPDB; Probability=99.8; Identities=28%; Resolution=2.8A; MatchedRegionTemplate=8-173; ROrf2, Ras-related protein Rab-1A; alpha-beta fold, Rab1-GAP, Rab1, PROTEIN; HET: AF3, PGE, GDP; {Escherichia coli}
----YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG
NKCDLTTKKVVD------------YTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIK--
##### No 94 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILV
GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2P5S_B:AUTOPDB; Probability=99.8; Identities=30%; Resolution=2.15A; MatchedRegionTemplate=565-736; RAS and EF-hand domain containing; G-PROTEIN, RAB, GDP, STRUCTURAL GENOMICS; HET: GDP; {Homo sapiens}
----SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE-WVDMIEDAAHETVPIMLV
GNKADIRDTAATEGQK------CVPGHFGEKLAMTY-GALFCETSAKDGSNIVEAVLHLAREVK--
##### No 95 #####
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>sequence1; MatchedRegionQuery=6-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1Z0J_A:AUTOPDB; Probability=99.8; Identities=22%; Resolution=1.32A; MatchedRegionTemplate=3-168; Ras-related protein Rab-22A, FYVE-finger-containing Rab5; Rab Effector, Rab GTPase, Rab22; HET: GTP; {Mus musculus}
-----LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAG
NKCDLTDVREVM------------ERDAKDYADSIH-AIFVETSAKNAININELFIEISRRIPS-
##### No 96 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2ERY_B:AUTOPDB; Probability=99.7; Identities=30%; Resolution=1.7A; MatchedRegionTemplate=15-179; Ras-related protein R-Ras2; RRAS2, GDP/GTP binding, GTP hydrolysis; HET: GDP; {Homo sapiens}
-----QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIG
NKADLDHQRQVT------------QEEGQQLARQLK-VTYMEASAKIRMNVDQAFHELVRVIR--
##### No 97 #####
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>sequence1; MatchedRegionQuery=3-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6IF3_B:AUTOPDB; Probability=99.7; Identities=31%; Resolution=1.5A; MatchedRegionTemplate=10-176; Arf-GAP with coiled-coil, ANK repeat; Rab35, ACAP2, complex, cryatal structure; HET: GTP; {Homo sapiens}
--RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGLERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR-WLHEINQNCDDVCRILVG
NKNDDPERKVVE------------TEDAYKFAGQMG-IQLFETSAKENVNVEEMFNCITELVL--
##### No 98 #####
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>sequence1; MatchedRegionQuery=7-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1KAO_A:AUTOPDB; Probability=99.7; Identities=32%; Resolution=1.7A; MatchedRegionTemplate=2-166; RAP2A, GUANOSINE-5'-DIPHOSPHATE; GTP-BINDING PROTEIN, SMALL G PROTEIN; HET: GDP; {Homo sapiens}
------REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVG
NKVDLESEREVS------------SSEGRALAEEWG-CPFMETSAKSKTMVDELFAEIVRQMNY-
##### No 99 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1Z08_C:AUTOPDB; Probability=99.7; Identities=27%; Resolution=1.8A; MatchedRegionTemplate=19-185; Ras-related protein Rab-21; Rab GTPase, Rab21, Vesicular trafficking; HET: GNP; {Homo sapiens}
----RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVG
NKIDLEKERHVS------------IQEAESYAESV-GAKHYHTSAKQNKGIEELFLDLCKRMIE-
##### No 100 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2HUP_A:AUTOPDB; Probability=99.7; Identities=27%; Resolution=2.05A; MatchedRegionTemplate=39-207; Crystal structure of human RAB43; G-PROTEIN, RAB, GDP, STRUCTURAL GENOMICS; HET: GDP; {Homo sapiens}
---QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIG
NKSDLSELREVS------------LAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM-
##### No 101 #####
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>sequence1; MatchedRegionQuery=4-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2X77_A:AUTOPDB; Probability=99.7; Identities=18%; Resolution=2.1A; MatchedRegionTemplate=21-186; ADP-RIBOSYLATION FACTOR; GTP-BINDING PROTEIN, SMALL GTPASE, NUCLEOTIDE-BINDING; HET: GDP; {LEISHMANIA MAJOR}
---PADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTV-PTVGVNL-E--TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFA
NKQDLPDAASEA-EIAE--------QLGVSSI-MNRTWTIVKSSSKTGDGLVEGMDWLVERLR--
##### No 102 #####
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>sequence1; MatchedRegionQuery=3-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6IF2_B:AUTOPDB; Probability=99.7; Identities=30%; Resolution=2.4A; MatchedRegionTemplate=9-176; Ras-related protein Rab-35, Iporin; Rab35, RUSC2, complex, ENDOCYTOSIS; HET: GTP; {Homo sapiens}
--RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGLERFRTITSTYYRGTHGVIVVYDVTSAESFVNVK-RWLHEINQNCDDVCRILVG
NKNDDPERKVVE------------TEDAYKFAGQM-GIQLFETSAKENVNVEEMFNCITELVLR-
##### No 103 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1WA5_A:AUTOPDB; Probability=99.7; Identities=26%; Resolution=2.0A; MatchedRegionTemplate=12-176; GTP-BINDING NUCLEAR PROTEIN RAN, IMPORTIN; NUCLEAR TRANSPORT-COMPLEX, NUCLEAR TRANSPORT, EXPORTIN; HET: GTP; {CANIS FAMILIARIS}
---EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW-HRDLVRVCENIPIVLCG
NKVDIKDRKVKA--------------KSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLIG-
##### No 104 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3NKV_A:AUTOPDB; Probability=99.7; Identities=27%; Resolution=1.7A; MatchedRegionTemplate=9-174; Ras-related protein Rab-1B; posttranslational modification, AMPylation, adenylylation, Rab1b; HET: GNP, AMP; {Homo sapiens}
----YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG
NKSDLTTKKVVDN------------TTAKEFADSL-GIPFLETSAKNATNVEQAFMTMAAEIK--
##### No 105 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4HLQ_B:AUTOPDB; Probability=99.7; Identities=27%; Resolution=3.3A; MatchedRegionTemplate=8-173; TBC1 domain family member 20; Rab1b, RabGAP, Fluorides, GTPase-Activating Proteins; HET: GDP, SO4, BEF; {Homo sapiens}
----YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG
NKSDLTTKKVVDN------------TTAKEFADSL-GIPFLETSAKNATNVEQAFMTMAAEIK--
##### No 106 #####
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>sequence1; MatchedRegionQuery=7-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILV
GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2ERX_A:AUTOPDB; Probability=99.7; Identities=28%; Resolution=1.65A; MatchedRegionTemplate=7-171; GTP-binding protein Di-Ras2; DIRAS2, GTP hydrolysis, TRANSPORT PROTEIN; HET: GDP, PO4; {Homo sapiens}
------NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLV
GNKCDESPSREVQS------------SEAEALARTW-KCAFMETSAKLNHNVKELFQELLNLEK--
##### No 107 #####
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>sequence1; MatchedRegionQuery=7-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2CE2_X:AUTOPDB; Probability=99.7; Identities=33%; Resolution=1.0A; MatchedRegionTemplate=2-165; GTPASE HRAS; SIGNALING PROTEIN, GUANINE NUCLEOTIDE BINDING; HET: XY2, GDP; {HOMO SAPIENS}
------TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG
NKSDLAARTVESR-------------QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ-
##### No 108 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH----FCPNVPI
ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1VG8_C:AUTOPDB; Probability=99.7; Identities=26%; Resolution=1.7A; MatchedRegionTemplate=3010-3181; Ras-related protein Rab-7; GTP-binding protein, PROTEIN TRANSPORT; HET: GNP; {Rattus norvegicus}
---RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF
VVLGNKIDLENRQVATK-------------RAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK-
##### No 109 #####
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>sequence1; MatchedRegionQuery=3-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILV
GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2BCG_Y:AUTOPDB; Probability=99.7; Identities=27%; Resolution=1.48A; MatchedRegionTemplate=5-172; Secretory pathway GDP dissociation inhibitor; RabGTPase, geranylgeranylation, vesicular transport, Protein; HET: GER, GDP; {Saccharomyces cerevisiae}
--SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKM-WLQEIDRYATSTVLKLLV
GNKCDLKDKRVVEY------------DVAKEFADA-NKMPFLETSALDSTNVEDAFLTMARQIK--
##### No 110 #####
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>sequence1; MatchedRegionQuery=6-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1Z2A_A:AUTOPDB; Probability=99.7; Identities=31%; Resolution=1.9A; MatchedRegionTemplate=10-174; Ras-related protein Rab-23; Rab GTPase, Rab23, Vesicular trafficking; HET: GDP; {Mus musculus}
-----EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE-VGDIPTALVQ
NKIDLLDDSCIKN------------EEAEGLAKRL-KLRFYRTSVKEDLNVSEVFKYLAEKHLQ-
##### No 111 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKD--QFPEVYVPTVFENY-VADIEVDG--KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF---CPN
VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT-KDGVREVFEMATRAALQA
>2YC4_C:AUTOPDB; Probability=99.7; Identities=23%; Resolution=2.8A; MatchedRegionTemplate=22-198; INTRAFLAGELLAR TRANSPORT PROTEIN 25, SMALL; TRANSPORT PROTEIN, CILIUM, IFT COMPLEX; {CHLAMYDOMONAS REINHARDTII}
---TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERP
LRAVLVANKTDLPPQRHQ-----------VRLDMAQDWATTNT-LDFFDVSANPPGKDADAPFLSIATTFYR-
##### No 112 #####
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>sequence1; MatchedRegionQuery=6-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1Z22_A:AUTOPDB; Probability=99.7; Identities=31%; Resolution=2.06A; MatchedRegionTemplate=10-174; Ras-related protein Rab-23; Rab GTPase, Rab23, Vesicular transport; HET: GDP; {Mus musculus}
-----EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVA-EVGDIPTALVQ
NKIDLLDDSCIKN------------EEAEGLAKRL-KLRFYRTSVKEDLNVSEVFKYLAEKHLQ-
##### No 113 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5JCZ_I:AUTOPDB; Probability=99.7; Identities=28%; Resolution=2.056A; MatchedRegionTemplate=19-186; Ras-related protein Rab-11A, Unconventional myosin-Va; myosin, complex, Rab, motor cargo; HET: EDO, GOL, BEF, GDP; {Homo sapiens}
---EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG
NKSDLRHLRAVP------------TDEARAFAEKNG-LSFIETSALDSTNVEAAFQTILTEIYR-
##### No 114 #####
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>sequence1; MatchedRegionQuery=6-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3BBP_C:AUTOPDB; Probability=99.7; Identities=29%; Resolution=3.0A; MatchedRegionTemplate=27-190; Ras-related protein Rab-6A, GRIP and; Golgi complex GRIP domain; HET: GTP; {Homo sapiens}
-----LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVG
NKTDLADKRQVS------------IEEGERKAKEL-NVMFIETSAKAGYNVKQLFRRVAAAL---
##### No 115 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV----------YVPTVFENYV-ADI-EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDS------PDSLENIPEKW
TPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3T1T_A:AUTOPDB; Probability=99.7; Identities=27%; Resolution=1.9A; MatchedRegionTemplate=11-193; Gliding protein mglA (E.C.3.6.5.2); G domain containg protein, bacterial; HET: GDP; {Thermus thermophilus}
---NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE-N
LAEYGLTLDDVPIVIQVNKRDLPDALPV--------------EMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA-
##### No 116 #####
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>sequence1; MatchedRegionQuery=2-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPI
ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4QXA_A:AUTOPDB; Probability=99.7; Identities=31%; Resolution=2.3A; MatchedRegionTemplate=7-180; Ras-related protein Rab-9A, Small G; PH domain, Rab9A, RUTBC2, Rab; HET: GTP; {Mus musculus}
-MAGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGLERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF
VILGNKTDIKERQVST-------------EEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILA-
##### No 117 #####
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>sequence1; MatchedRegionQuery=4-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1UKV_Y:AUTOPDB; Probability=99.7; Identities=25%; Resolution=1.5A; MatchedRegionTemplate=6-172; Secretory pathway GDP dissociation inhibitor/GTP-binding; GTPase, Hydrolase, GDP dissociation inhibitor; HET: GER, GDP; {Saccharomyces cerevisiae}
---EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG
NKCDLKDKRVVE------------YDVAKEFADAN-KMPFLETSALDSTNVEDAFLTMARQIK--
##### No 118 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV----------YVPTVFENYV-ADI-EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDS------PDSLENIPEKW
TPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3T1O_B:AUTOPDB; Probability=99.7; Identities=27%; Resolution=1.9A; MatchedRegionTemplate=12-194; Gliding protein mglA (E.C.3.6.5.2); G domain containing protein, bacterial; HET: GDP; {Thermus thermophilus}
---NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE-N
LAEYGLTLDDVPIVIQVNKRDLPDALPV--------------EMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA-
##### No 119 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV----------YVPTVFENYV-ADI-EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDS------PDSLENIPEKW
TPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3T1T_C:AUTOPDB; Probability=99.7; Identities=27%; Resolution=1.9A; MatchedRegionTemplate=18-200; Gliding protein mglA (E.C.3.6.5.2); G domain containg protein, bacterial; HET: MSE, GDP; {Thermus thermophilus}
---NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE-N
LAEYGLTLDDVPIVIQVNKRDLPDALPV--------------EMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA-
##### No 120 #####
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>sequence1; MatchedRegionQuery=6-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG------VREVFEMATRAALQA
>4M9Q_B:AUTOPDB; Probability=99.7; Identities=17%; Resolution=2.5A; MatchedRegionTemplate=19-186; ARF-like GTPase (E.C.3.6.5.2); GTPase, G domain, Joubert Syndrome; HET: GNP, SO4; {Chlamydomonas reinhardtii}
-----PRKITIALLGLDNAGKTTLLNSIQGEVDRD-TTPTFGFN---STTLNEGKYKIEVFDLGGGKNIRGVWKKYLAEVHAIVYVVDAADPGRFEESKMTMAEVLENQFMRDKPICIFA
NKQDLPTAAPAAEVVKG---------LGLATC--RNSHNVFPCTAKMPAGQDVDHRLRDGLKWLVGTV---
##### No 121 #####
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>sequence1; MatchedRegionQuery=3-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3GJ0_B:AUTOPDB; Probability=99.7; Identities=26%; Resolution=1.48A; MatchedRegionTemplate=17-181; GTP-binding nuclear protein Ran; G Protein, GDP, Acetylation, Cytoplasm; HET: GDP; {Homo sapiens}
--GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVCENIPIVLCG
NKVDIKDRKVKA--------------KSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLI--
##### No 122 #####
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>sequence1; MatchedRegionQuery=5-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4ILE_A:AUTOPDB; Probability=99.7; Identities=20%; Resolution=2.676A; MatchedRegionTemplate=25-189; ADP-ribosylation factor-like protein 8A; GTPase, MEMBRANE TRAFFICKING, TRANSPORT PROTEIN; HET: GDP; {Homo sapiens}
----WKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFN-MRK--ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLG
NKRDLPGALDEKELIEK---------MNLSAIQD-REICCYSISCKEKDNIDITLQWLIQHS---
##### No 123 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKD--QFPEVYVPTVFENY-VADIEVDG--KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF---CPN
VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT-KDGVREVFEMATRAALQA
>2YC2_D:AUTOPDB; Probability=99.7; Identities=23%; Resolution=2.588A; MatchedRegionTemplate=23-199; INTRAFLAGELLAR TRANSPORT PROTEIN 25, SMALL; TRANSPORT PROTEIN, CILIUM, IFT COMPLEX; {CHLAMYDOMONAS REINHARDTII}
---TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERP
LRAVLVANKTDLPPQRHQ-----------VRLDMAQDWATTNT-LDFFDVSANPPGKDADAPFLSIATTFYR-
##### No 124 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPII
LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6VBV_3:AUTOPDB; Probability=99.7; Identities=15%; Resolution=3.5A; MatchedRegionTemplate=30-199; Bardet-Biedl syndrome 18 protein, BBS1; Cilia, ciliopathy, complex, membrane-protein transport; HET: GTP; {Bos taurus}
----KKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQDIVPTIGFSI-Q--KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDKLRMVVAKEELRTLLNHPDIKHRRIPIL
FFANKMDLRDALTS-VKVSQLL--------CLEDIKD-KPWHICASDAIKGEGLQEGVDWLQDQIQS-
##### No 125 #####
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>sequence1; MatchedRegionQuery=4-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3DOE_A:AUTOPDB; Probability=99.7; Identities=15%; Resolution=2.25A; MatchedRegionTemplate=13-178; ADP-ribosylation factor-like protein 2, ADP-ribosylation; ADP-ribosylation factor-like 2, binder of; HET: GTP; {Homo sapiens}
---QKERELRLLMLGLDNAGKTTILKKFNGEDIDTI-SPTLGFN---IKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFA
NKQDLPGALSS-NAIREV-------L-ELDSIRS-HHWCIQGCSAVTGENLLPGIDWLLDDIS--
##### No 126 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2WKP_A:AUTOPDB; Probability=99.7; Identities=57%; Resolution=1.9A; MatchedRegionTemplate=555-733; NPH1-1, RAS-RELATED C3 BOTULINUM TOXIN; TRANSFERASE, CELL ADHESION, GTPASE, SMALL; HET: GTP, FMN; {AVENA SATIVA, HOMO SAPIENS}
----AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGT
KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC-
##### No 127 #####
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>sequence1; MatchedRegionQuery=4-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1Z6Y_A:AUTOPDB; Probability=99.7; Identities=19%; Resolution=2.4A; MatchedRegionTemplate=14-179; ADP-ribosylation factor-like protein 5; GDP-Binding, Membrane Trafficking, Structural Genomics; HET: GDP; {Homo sapiens}
---FNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSN-VEEIVI--NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFA
NKQDVKECMTV-AEISQFLK---------LTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK--
##### No 128 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6O62_A:AUTOPDB; Probability=99.7; Identities=28%; Resolution=1.88A; MatchedRegionTemplate=19-184; Ras-related protein SEC4; G-PROTEIN, RAB, GDP, P-LOOP, GTPASE; HET: GDP; {Candida albicans (strain SC5314 / ATCC MYA-2876)}
----YDMIMKLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVG
NKCDDEVNRQVS------------KEQGQELAAKLN-VPFLEASAKSNENVDSIFYELASIIQ--
##### No 129 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3IHW_A:AUTOPDB; Probability=99.7; Identities=19%; Resolution=1.92A; MatchedRegionTemplate=103-266; CENTG3; ras, centaurin, gtpase, Structural Genomics; {Homo sapiens}
----QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVG
TQDAISAANPR--VI--------DDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVA-
##### No 130 #####
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>sequence1; MatchedRegionQuery=4-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYMECSAKTKDGVREVFEMATRAALQA
>5KUT_B:AUTOPDB; Probability=99.7; Identities=15%; Resolution=1.693A; MatchedRegionTemplate=412-575; Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GDP; {Homo sapiens}
---TQRSVLLCKVVGACGVGKSAFLQAFLGRGLGHQDTREQPPGYAIDTVQVNGQEKYLILCEVGTDG---LLATSLDATCDVACLMFDGSDPKSFAHCASVYKHHYM--DGQTPCLFVS
SKADLPEGVAV------------SGPSPAEFCRKHRLPAPVPFSCAGPAEPSTTIFTQLATMAA--
##### No 131 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILV
GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6HUF_H:AUTOPDB; Probability=99.7; Identities=28%; Resolution=2.82A; MatchedRegionTemplate=13-180; Ras-related protein Rab-27A; GTPase, Exocytosis, Vesicle transport; HET: GNP, MG; {Homo sapiens}
----YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKTIYRNDKRIKLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEESFLNVRNWISQLKTHAYSENPDIVLC
GNKSDLEDERVVA------------AAEARQLAEHYG-IPYFETSAANGTNISQAIEMLLDLIMK-
##### No 132 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILV
GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6HUF_P:AUTOPDB; Probability=99.7; Identities=28%; Resolution=2.82A; MatchedRegionTemplate=13-180; Ras-related protein Rab-27A; GTPase, Exocytosis, Vesicle transport; HET: GNP, MG; {Homo sapiens}
----YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKTIYRNDKRIKLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEESFLNVRNWISQLKTHAYSENPDIVLC
GNKSDLEDERVVA------------AAEARQLAEHYG-IPYFETSAANGTNISQAIEMLLDLIMK-
##### No 133 #####
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>sequence1; MatchedRegionQuery=3-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2MMG_A:AUTOPDB; Probability=99.7; Identities=26%; Resolution=NMR; MatchedRegionTemplate=5-170; GTP-binding nuclear protein Ran; G-protein, nucleotide binding, GTP binding; {Homo sapiens}
--GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCG
NKVDIKDRKVKA--------------KSIVFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLIG-
##### No 134 #####
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>sequence1; MatchedRegionQuery=4-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYMECSAKTKDGVREVFEMATRAALQA
>5KUT_A:AUTOPDB; Probability=99.7; Identities=15%; Resolution=1.693A; MatchedRegionTemplate=412-575; Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GDP; {Homo sapiens}
---TQRSVLLCKVVGACGVGKSAFLQAFLGRGLGHQDTREQPPGYAIDTVQVNGQEKYLILCEVGTDG---LLATSLDATCDVACLMFDGSDPKSFAHCASVYKHHYM--DGQTPCLFVS
SKADLPEGVAV------------SGPSPAEFCRKHRLPAPVPFSCAGPAEPSTTIFTQLATMAA--
##### No 135 #####
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>sequence1; MatchedRegionQuery=4-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2X77_B:AUTOPDB; Probability=99.7; Identities=19%; Resolution=2.1A; MatchedRegionTemplate=20-185; ADP-RIBOSYLATION FACTOR; GTP-BINDING PROTEIN, SMALL GTPASE, NUCLEOTIDE-BINDING; HET: GDP; {LEISHMANIA MAJOR}
---PADRKIRVLMLGLDNAGKTSILYRLHLGDVVTT-VPTVGVNL-E--TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFA
NKQDLPDAASEA-EIAE----QL----GVSSI-MNRTWTIVKSSSKTGDGLVEGMDWLVERLR--
##### No 136 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2Y8E_A:AUTOPDB; Probability=99.7; Identities=28%; Resolution=1.39A; MatchedRegionTemplate=20-185; RAB-PROTEIN 6; HYDROLASE, NUCLEOTIDE BINDING, GTP BINDING; HET: SO4, GNP; {DROSOPHILA MELANOGASTER}
----PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVG
NKTDLSDKRQVS------------TEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAALP--
##### No 137 #####
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>sequence1; MatchedRegionQuery=4-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDG-KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVP
IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4CZ2_C:AUTOPDB; Probability=99.7; Identities=22%; Resolution=2.97A; MatchedRegionTemplate=47-219; RAS-RELATED PROTEIN RAB-32, ANKYRIN REPEAT; SIGNALING PROTEIN, VARP, RAB-EFFECTOR, RAB; HET: MSE, GCP; {HOMO SAPIENS}
---TREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGLERFGNMTRVYYKEAMGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIP
AVLLANKCDQNKDSSM------------SPSQMDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKML--
##### No 138 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2BME_A:AUTOPDB; Probability=99.7; Identities=29%; Resolution=1.57A; MatchedRegionTemplate=9-176; RAS-RELATED PROTEIN RAB4A (E.C.3.6.5.2); GTP-BINDING PROTEIN, VESICULAR TRANSPORT, ENDOCYTOSIS; HET: GNP, TRS; {HOMO SAPIENS}
---TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG
NKKDLDADREVT------------FLEASRFAQEN-ELMFLETSALTGENVEEAFVQCARKILN-
##### No 139 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5C1S_A:AUTOPDB; Probability=99.7; Identities=19%; Resolution=3.1A; MatchedRegionTemplate=238-398; Small GTPase EhRabX3; P-loop containing nucleotide triphosphate hydrolases; HET: MSE, GDP; {Entamoeba histolytica}
-----DIKIRMLMVGDQNVGKTTFIRKFALQDPTGHDFM---NAITTRFEMEKIKYEIIMIDWGFYNKLLQTNPAISRTIEAILIVYDITNEESFQNIHRKYYPLINNKFSDVAGVIVGY
KTDLEAQRKI------------TMGDALTLADWLG-YKYVEMSSKDTEDHSSIIKALAHSIR--
##### No 140 #####
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>sequence1; MatchedRegionQuery=3-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4HAT_A:AUTOPDB; Probability=99.7; Identities=26%; Resolution=1.78A; MatchedRegionTemplate=12-176; GTP-binding nuclear protein Ran, Ran-specific; HEAT repeat, nuclear export, Ran-RanBP1; HET: GOL, LMB, GNP, EDO; {Homo sapiens}
--GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW-HRDLVRVCENIPIVLCG
NKVDIKDRKVKAK--------------SIVFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLI--
##### No 141 #####
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>sequence1; MatchedRegionQuery=3-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2O52_A:AUTOPDB; Probability=99.7; Identities=28%; Resolution=2.2A; MatchedRegionTemplate=24-192; Crystal structure of human RAB4B; G-PROTEIN, RAB, GDP, STRUCTURAL GENOMICS; HET: GDP; {Homo sapiens}
--IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCG
NKKDLDPEREVT------------FLEASRFAQENE-LMFLETSALTGENVEEAFLKCARTILN-
##### No 142 #####
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>sequence1; MatchedRegionQuery=4-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDG-KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVP
IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4CZ2_B:AUTOPDB; Probability=99.7; Identities=22%; Resolution=2.97A; MatchedRegionTemplate=46-218; RAS-RELATED PROTEIN RAB-32, ANKYRIN REPEAT; SIGNALING PROTEIN, VARP, RAB-EFFECTOR, RAB; HET: GCP; {HOMO SAPIENS}
---TREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGLERFGNMTRVYYKEAMGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIP
AVLLANKCDQNKDSSM------------SPSQMDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKML--
##### No 143 #####
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>sequence1; MatchedRegionQuery=6-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2WKQ_A:AUTOPDB; Probability=99.7; Identities=57%; Resolution=1.6A; MatchedRegionTemplate=557-734; NPH1-1, RAS-RELATED C3 BOTULINUM TOXIN; TRANSFERASE, CELL ADHESION, NUCLEOTIDE-BINDING, PROTEIN; HET: FMN, GTP; {AVENA SATIVA, HOMO SAPIENS}
-----KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGT
KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC-
##### No 144 #####
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>sequence1; MatchedRegionQuery=8-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1O3Y_A:AUTOPDB; Probability=99.7; Identities=18%; Resolution=1.5A; MatchedRegionTemplate=17-178; ADP-ribosylation factor 1; PROTEIN TRANSPORT; HET: GTP; {Mus musculus}
-------SMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGF---NVETVEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFA
NKQDLPNAMNAAEITDK---------LGLHSLR-HRNWYIQATCATSGDGLYEGLDWLSNQLR--
##### No 145 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3DZ8_A:AUTOPDB; Probability=99.7; Identities=30%; Resolution=1.9A; MatchedRegionTemplate=28-195; Crystal structure of human Rab3B; ras, gdp, gtpase, structural genomics; HET: GDP; {Homo sapiens}
---NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVG
NKCDMEEERVVPT------------EKGQLLAEQLG-FDFFEASAKENISVRQAFERLVDAICD-
##### No 146 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3RAB_A:AUTOPDB; Probability=99.7; Identities=29%; Resolution=2.0A; MatchedRegionTemplate=20-184; RAB3A; G PROTEIN, VESICULAR TRAFFICKING, GTP; HET: GNP; {Rattus norvegicus}
-----DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG
NKCDMEDERVVS------------SERGRQLADHLG-FEFFEASAKDNINVKQTFERLVDVIC--
##### No 147 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3CPJ_B:AUTOPDB; Probability=99.7; Identities=27%; Resolution=2.35A; MatchedRegionTemplate=18-185; Rab GDP-dissociation inhibitor, GTP-binding protein; Rab GTPase, prenylation, vesicular transport; HET: GDP; {Saccharomyces cerevisiae}
---DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIG
NKSDLAHLRAVP------------TEESKTFAQENQ-LLFTETSALNSENVDKAFEELINTIYQ-
##### No 148 #####
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>sequence1; MatchedRegionQuery=3-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVD-GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVP
IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6S5H_A:AUTOPDB; Probability=99.7; Identities=22%; Resolution=2.0A; MatchedRegionTemplate=4-179; Ras-related protein Rab-38; GTPase, Ras-related protein Rab-38, Structural; HET: GTP, EDO; {Homo sapiens}
--PHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVS
VVLLANKCDQGKDVLMN-----------NGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILA-
##### No 149 #####
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>sequence1; MatchedRegionQuery=8-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6BOF_B:AUTOPDB; Probability=99.7; Identities=31%; Resolution=1.401A; MatchedRegionTemplate=3-165; GTPase KRas; HYDROLASE, small gtpase, signal transduction; HET: GDP; {Homo sapiens}
-------EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG
NKCDLPSRTVDT-------------KQAQDLARSYG-IPFIETSTKTRQGVDDAFYTLVREIRK-
##### No 150 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5WDQ_A:AUTOPDB; Probability=99.7; Identities=32%; Resolution=1.25A; MatchedRegionTemplate=4-169; GTPase HRas (E.C.3.6.5.2); small G-protein, GTPase, ONCOPROTEIN, HYDROLASE; HET: GNP, ACT; {Homo sapiens}
----HMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG
NKCDAAARTVES-------------RQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ-
##### No 151 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIE-VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV
GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5XC5_A:AUTOPDB; Probability=99.7; Identities=19%; Resolution=1.398A; MatchedRegionTemplate=7-173; Probable Rab-related GTPase; Rab GTPase, Acanthamoeba polyphaga mimivirus; HET: ACT, GTP; {Acanthamoeba polyphaga mimivirus}
-----NNGYKIILIGSSGVGKSSIVHQFLFNRKISNVSPTIGAAFASKQVIAKNGKTLKLNIWDTAGLERFRSITKMYYTNSLGCLVVFDVTDRESFDDVYYWINDLRINCHTTYYILVV
ANKIDIDKNNWR-V----------SENEIKKFCRDND-CDYVFASSFESDTVNNLFGKMIDKMS--
##### No 152 #####
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>sequence1; MatchedRegionQuery=4-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1OIX_A:AUTOPDB; Probability=99.7; Identities=29%; Resolution=1.7A; MatchedRegionTemplate=30-195; RAS-RELATED PROTEIN RAB-11A; SMALL G PROTEIN, INTRACELLULAR TRAFFICKING; HET: GDP; {HOMO SAPIENS}
---EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG
NKSDLRHLRAVP------------TDEARAFAEKNG-LSFIETSALDSTNVEAAFQTILTEI---
##### No 153 #####
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>sequence1; MatchedRegionQuery=3-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2IL1_A:AUTOPDB; Probability=99.7; Identities=26%; Resolution=2.1A; MatchedRegionTemplate=154-323; predicted human GTPase in complex; G-PROTEIN, RAB, GDP, GTPASE, PREDICTED; HET: GDP; {Homo sapiens}
--RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG
NKLDCETDREIT------------RQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK-
##### No 154 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2BOV_A:AUTOPDB; Probability=99.7; Identities=33%; Resolution=2.66A; MatchedRegionTemplate=21-186; RAS-RELATED PROTEIN RAL-A, MONO-ADP-RIBOSYLTRANSFERASE C3; C3BOT, EXOENZYME, RALA, GTPASE, ADP; HET: GDP; {HOMO SAPIENS}
----SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG
NKSDLEDKRQVS------------VEEAKNRAEQWN-VNYVETSAKTRANVDKVFFDLMREIR--
##### No 155 #####
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>sequence1; MatchedRegionQuery=7-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6IY1_C:AUTOPDB; Probability=99.7; Identities=29%; Resolution=2.11A; MatchedRegionTemplate=10-172; Ras-related protein Rab-11A; Complex, transport, GTPase, TRANSPORT PROTEIN; HET: GDP; {Homo sapiens}
------YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG
NKSDLRHLRAVP------------TDEARAFAEKNG-LSFIETSALDSTNVEAAFQTILTEI---
##### No 156 #####
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>sequence1; MatchedRegionQuery=3-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH--FCPNVPIILV
GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD-GVREVFEMATRAALQA
>2ATV_A:AUTOPDB; Probability=99.7; Identities=28%; Resolution=1.9A; MatchedRegionTemplate=27-195; RAS-like estrogen-regulated growth inhibitor; RERG, GDP/GTP binding, GTP hydrolysis; HET: GDP; {Homo sapiens}
--MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILV
GNKADLDHSRQVS------------TEEGEKLATELA-CAFYECSACTGEGNITEIFYELCREVRR-
##### No 157 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIE----------VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF
-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3BC1_A:AUTOPDB; Probability=99.7; Identities=28%; Resolution=1.8A; MatchedRegionTemplate=11-187; Ras-related protein Rab-27A (E.C.3.6.5.2), Synaptotagmin-like; Rab27, GTPase, Rab, signaling protein; HET: GNP; {Mus musculus}
----YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA
YSENPDIVLCGNKSDLEDQRAVK------------EEEARELAEKYG-IPYFETSAANGTNISHAIEMLLDLIM--
##### No 158 #####
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>sequence1; MatchedRegionQuery=5-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2H17_A:AUTOPDB; Probability=99.7; Identities=19%; Resolution=1.7A; MatchedRegionTemplate=33-195; Structure of human ADP-ribosylation factor-like; GDP, GTPASE, MEMBRANE TRAFFICKING, STRUCTURAL; HET: GDP; {Homo sapiens}
----GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSN-VEE--IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFA
NKQDVKECMTV-AEISQFLK----L---TSI--KDHQWHIQACCALTGEGLCQGLEWMMSR----
##### No 159 #####
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>sequence1; MatchedRegionQuery=3-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVD-GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIIL
VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6S5F_A:AUTOPDB; Probability=99.7; Identities=28%; Resolution=1.7A; MatchedRegionTemplate=7-177; Ras-related protein Rab-39B; GTPase, Ras-related protein Rab-39B, GMPPNP; HET: GNP; {Homo sapiens}
--AIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVL
VGHKCDLDTQRQVT------------RHEAEKLAAAYG-MKYIETSARDAINVEKAFTDLTRDIYE-
##### No 160 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV----------YVPTVFENYV-ADI-EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID------SPDSLENIPEKW
TPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6H17_A:AUTOPDB; Probability=99.7; Identities=26%; Resolution=1.275A; MatchedRegionTemplate=10-190; Mutual gliding-motility protein MglA; GTPase, motility, CYTOSOLIC PROTEIN; HET: SO4, GSP; {Myxococcus xanthus DK 1622}
----REINCKIVYYGPGLCGKTTNLQYIYNKTAAETKGKLISLSTETDRTLFFDFLPLSLGEIRGFKTRFHLYTVPGQVFYDASRKLILKGVDGVVFVADSQIERMEANMESLENLRI-N
LAEQGYDLNKIPYVIQYNKRDLPNAVT--------------VEEMRKALNHRN-IPEYQAVAPTGVGVFDTLKAVAKLVLT-
##### No 161 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV
GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2G6B_A:AUTOPDB; Probability=99.7; Identities=30%; Resolution=2.0A; MatchedRegionTemplate=64-230; Ras-related protein Rab-26; G-PROTEIN, RAB, GTP ANALOGUE, Structural; HET: GNP; {Homo sapiens}
----YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLL
GNKVDSAHERVVK------------REDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAKELK--
##### No 162 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5XCO_A:AUTOPDB; Probability=99.7; Identities=31%; Resolution=1.25A; MatchedRegionTemplate=2-165; B-cell lymphoma 6 protein, F1324; Hydrolase, Complex, Inhibitor, Small GTPase; HET: GDP; {Homo sapiens}
-----MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG
NKCDLPSRTVDTK-------------QAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREIR--
##### No 163 #####
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>sequence1; MatchedRegionQuery=5-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVK--PEEGRDM-ANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2FA9_B:AUTOPDB; Probability=99.7; Identities=20%; Resolution=2.5A; MatchedRegionTemplate=25-200; GTP-binding protein SAR1b; Sar1H79G mutant, PROTEIN TRANSPORT; HET: GDP, SO4; {Cricetulus griseus}
----YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHP-TSEELT--IAGMTFTTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILG
NKIDRPEAISE-ERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI---
##### No 164 #####
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>sequence1; MatchedRegionQuery=7-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6V5L_A:AUTOPDB; Probability=99.7; Identities=32%; Resolution=NMR; MatchedRegionTemplate=2-165; GTPase KRas; KRas, allosteric inhibitor, drug discovery; HET: GDP, QPD, MG; {Homo sapiens}
------TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG
NKCDLPSRTVDTK-------------QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRK-
##### No 165 #####
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>sequence1; MatchedRegionQuery=6-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5E95_A:AUTOPDB; Probability=99.7; Identities=34%; Resolution=1.402A; MatchedRegionTemplate=1-165; Mb(NS1), GTPase HRas; H-Ras, Monobody, Inhibitor, Complex, SIGNALING; HET: GDP; {Homo sapiens}
-----MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG
NKCDLAARTVESR-------------QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ-
##### No 166 #####
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>sequence1; MatchedRegionQuery=4-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2GZH_A:AUTOPDB; Probability=99.7; Identities=28%; Resolution=2.47A; MatchedRegionTemplate=12-177; Ras-related protein Rab-11A (E.C.3.6.5.2), RAB11-FIP2; Ras-like G protein fold, a-helical; HET: GTP, MSE; {Homo sapiens}
---EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG
NKSDLRHLRAVP------------TDEARAFAEKN-GLSFIETSALDSTNVEAAFQTILTEI---
##### No 167 #####
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>sequence1; MatchedRegionQuery=4-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILV
GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4V0L_A:AUTOPDB; Probability=99.7; Identities=18%; Resolution=2.197A; MatchedRegionTemplate=14-180; ARF-LIKE SMALL GTPASE; HYDROLASE; HET: GTP; {CHLAMYDOMONAS REINHARDTII}
---AASKKVNVLVVGLDNSGKTTIIERLKPRPRQAAEVAPTVG---FTVDEVEKGPLTFTVFDMSGAGRYRTLWEQYYREADAVVFVVDSADKLRMVVARDEMEHMLKHSNMRKVPILYF
ANKKDLPVAMPPVEIAQALG---------LDDI-KDRPWQIVPSNGLTGEGVDKGIDWLAERL---
##### No 168 #####
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>sequence1; MatchedRegionQuery=2-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQ--FPEVYVPTVFENY-VADIEVD-----------GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV
KHF------------CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK-TKDGVREVFEMATRAALQA
>6IA7_B:AUTOPDB; Probability=99.7; Identities=16%; Resolution=2.3A; MatchedRegionTemplate=8-202; Intraflagellar transport protein 22; Intraflagellar transport protein 22, cilium; HET: GTP; {Trypanosoma brucei brucei (strain 927/4 GUTat10.1)}
-ASMSDDLVKILVLGPSKSGKSTVTNFLAGTRDTPTKEYHETNPLRVLEVEIALDDTRRSGRQAAGLKKAVVQLWDVGGSSKHQAGWPAIASNADGIIYVFNPEVKGSEKELLLWYKNFA
LNQDELDDDNNFKMRVTDGHSLIFSHHSSLPEFAVG-------------DNAIPPMPKQLQGIRALETSLDYQSDNFKEAFDALVEQII--
##### No 169 #####
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>sequence1; MatchedRegionQuery=2-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQ--FPEVYVPTVFENY-VADIEVD-----------GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV
KHF------------CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK-TKDGVREVFEMATRAALQA
>6IAE_A:AUTOPDB; Probability=99.7; Identities=16%; Resolution=2.49A; MatchedRegionTemplate=5-199; Intraflagellar transport protein 22; Intraflagellar transport protein 22, cilium; HET: GTP; {Trypanosoma brucei brucei (strain 927/4 GUTat10.1)}
-ASMSDDLVKILVLGPSKSGKSTVTNFLAGTRDTPTKEYHETNPLRVLEVEIALDDTRRSGRQAAGLKKAVVQLWDVGGSSKHQAGWPAIASNADGIIYVFNPEVKGSEKELLLWYKNFA
LNQDELDDDNNFKMRVTDGHSLIFSHHSSLPEFAVG-------------DNAIPPMPKQLQGIRALETSLDYQSDNFKEAFDALVEQII--
##### No 170 #####
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>sequence1; MatchedRegionQuery=6-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIIL
VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2NZJ_B:AUTOPDB; Probability=99.7; Identities=28%; Resolution=2.5A; MatchedRegionTemplate=1-168; GTP-binding protein REM 1; REM1, GDP/GTP binding, GTP hydrolysis; HET: GDP; {Homo sapiens}
-----MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIIL
VGNKADLARCREVSV------------EEGRACAVVF-DCKFIETSATLQHNVAELFEGVVRQLRL-
##### No 171 #####
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>sequence1; MatchedRegionQuery=8-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLEDYDR-LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIIL
VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3Q85_A:AUTOPDB; Probability=99.7; Identities=28%; Resolution=1.757A; MatchedRegionTemplate=115-280; GTP-binding protein REM 2; G-domain, G-protein, Cav2 beta, SIGNALING; HET: GNP; {Mus musculus}
-------VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL
VGNKSDLARSREVS------------LEEGRHLAGTLS-CKHIETSAALHHNTRELFEGAVRQIRL-
##### No 172 #####
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>sequence1; MatchedRegionQuery=5-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKP-EEG-RD-MANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1F6B_A:AUTOPDB; Probability=99.7; Identities=21%; Resolution=1.7A; MatchedRegionTemplate=34-209; SAR1; GTPASES, N-TERMINAL HELIX, MG-CONTAINING COMPLEX; HET: GDP, SO4; {Cricetulus griseus}
----YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLH-PTSEELT--IAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILG
NKIDRPEAISE-ERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI---
##### No 173 #####
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>sequence1; MatchedRegionQuery=8-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLEDYDR-LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIIL
VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3Q85_B:AUTOPDB; Probability=99.7; Identities=28%; Resolution=1.757A; MatchedRegionTemplate=115-280; GTP-binding protein REM 2; G-domain, G-protein, Cav2 beta, SIGNALING; HET: GNP; {Mus musculus}
-------VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL
VGNKSDLARSREVS------------LEEGRHLAGTLS-CKHIETSAALHHNTRELFEGAVRQIRL-
##### No 174 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVD----------GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF
-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2ZET_A:AUTOPDB; Probability=99.7; Identities=29%; Resolution=3.0A; MatchedRegionTemplate=13-188; Ras-related protein Rab-27B, Melanophilin; COMPLEX, GTP-BINDING PROTEIN, GTPASE, G-PROTEIN; HET: SO4, GTP; {Mus musculus}
-----DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA
YCENPDIVLIGNKADLPDQREVN------------ERQARELAEKYG-IPYFETSAATGQNVEKSVETLLDLIM--
##### No 175 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIE-VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV
GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5XC3_A:AUTOPDB; Probability=99.7; Identities=19%; Resolution=1.497A; MatchedRegionTemplate=7-173; Probable Rab-related GTPase; Rab GTPase, Acanthamoeba polyphaga mimivirus; HET: GDP; {Acanthamoeba polyphaga mimivirus}
-----NNGYKIILIGSSGVGKSSIVHQFLFNRKISNVSPTIGAAFASKQVIAKNGKTLKLNIWDTAGQERFRSITKMYYTNSLGCLVVFDVTDRESFDDVYYWINDLRINCHTTYYILVV
ANKIDIDKNNWR-----------VSENEIKKFCRDND-CDYVFASSFESDTVNNLFGKMIDKMS--
##### No 176 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGLEDYD-RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIIL
VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT---KDGVREVFEMATRAALQA
>6ZAY_A:AUTOPDB; Probability=99.7; Identities=26%; Resolution=2.4A; MatchedRegionTemplate=33-203; Ras-related protein Rab-33B, Autophagy-related protein; ATG16L autophagy autophagosome; HET: PO4, GDP, EDO, PEG; {Homo sapiens}
----RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRIL
VGNKCDLRSAIQVPT------------DLAQKFADTH-SMPLFETSAKNPNDNDHVEAIFMTLAHKLK--
##### No 177 #####
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>sequence1; MatchedRegionQuery=7-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIIL
VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6D71_A:AUTOPDB; Probability=99.7; Identities=25%; Resolution=1.71807785325A; MatchedRegionTemplate=12-177; Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); GTPase, mitochondria, Miro, Rho, GEM1P; HET: GTP; {Homo sapiens}
------KDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEI-TIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLIL
VGNKSDLVEYSSME-TILP---------IM---NQYTEIETCVECSAKNLKNISELFYYAQKAVLH-
##### No 178 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIIL
VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6D71_B:AUTOPDB; Probability=99.7; Identities=25%; Resolution=1.71807785325A; MatchedRegionTemplate=11-176; Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); GTPase, mitochondria, Miro, Rho, GEM1P; HET: GTP; {Homo sapiens}
-----KKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEI-TIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLIL
VGNKSDLVEYSSMET-IL---------PI---MNQYTEIETCVECSAKNLKNISELFYYAQKAVL--
##### No 179 #####
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>sequence1; MatchedRegionQuery=6-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLR--PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIIL
VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2NZJ_A:AUTOPDB; Probability=99.7; Identities=28%; Resolution=2.5A; MatchedRegionTemplate=1-168; GTP-binding protein REM 1; REM1, GDP/GTP binding, GTP hydrolysis; HET: GDP; {Homo sapiens}
-----MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIIL
VGNKADLARCREVSV------------EEGRACAVVF-DCKFIETSATLQHNVAELFEGVVRQLRL-
##### No 180 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2F9L_A:AUTOPDB; Probability=99.7; Identities=29%; Resolution=1.55A; MatchedRegionTemplate=8-173; RAB11B, member RAS oncogene family; Rab11b GTPase, vesicle transport, HYDROLASE; HET: GDP; {Homo sapiens}
----YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG
NKSDLRHLRAVP------------TDEARAFAEKNN-LSFIETSALDSTNVEEAFKNILTEIY--
##### No 181 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2F9M_A:AUTOPDB; Probability=99.7; Identities=29%; Resolution=1.95A; MatchedRegionTemplate=8-173; RAB11B, member RAS oncogene family; Rab11b GTPase, vesicle transport, HYDROLASE; HET: GNP; {Homo sapiens}
----YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG
NKSDLRHLRAVP------------TDEARAFAEKNN-LSFIETSALDSTNVEEAFKNILTEIY--
##### No 182 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1MOZ_B:AUTOPDB; Probability=99.7; Identities=18%; Resolution=3.17A; MatchedRegionTemplate=16-180; ADP-ribosylation factor-like 1 (ARL1) from; GTP-BINDING, PROTEIN BINDING; HET: GDP; {Saccharomyces cerevisiae}
----SNKELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFN-V--ETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFA
NKQDQPGALSASE-VSK--------ELNLVELKD-RSWSIVASSAIKGEGITEGLDWLIDVIK--
##### No 183 #####
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>sequence1; MatchedRegionQuery=4-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2EFE_D:AUTOPDB; Probability=99.7; Identities=31%; Resolution=2.08A; MatchedRegionTemplate=15-181; Similarity to vacuolar protein sorting-associated; GEF, GTPase, Vps9, Rab5, nucleotide; HET: GNH; {Arabidopsis thaliana}
---NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAG
NKSDLLDARKV------------TAEDAQTYAQENG-LFFMETSAKTATNVKEIFYEIARRLP--
##### No 184 #####
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>sequence1; MatchedRegionQuery=4-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2EFH_B:AUTOPDB; Probability=99.7; Identities=31%; Resolution=2.1A; MatchedRegionTemplate=15-181; Similarity to vacuolar protein sorting-associated; GEF, GTPase, Vps9, Rab5, nucleotide; HET: GDP; {Arabidopsis thaliana}
---NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAG
NKSDLLDARKV------------TAEDAQTYAQENG-LFFMETSAKTATNVKEIFYEIARRLP--
##### No 185 #####
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>sequence1; MatchedRegionQuery=4-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4G01_B:AUTOPDB; Probability=99.7; Identities=31%; Resolution=2.2A; MatchedRegionTemplate=15-181; Vacuolar protein sorting-associated protein 9A; GTPase-GDP-metal-GEF complex, vps9 domain, Ras; HET: GDP; {Arabidopsis thaliana}
---NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAG
NKSDLLDARKV------------TAEDAQTYAQENG-LFFMETSAKTATNVKEIFYEIARRLP--
##### No 186 #####
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>sequence1; MatchedRegionQuery=6-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQ--FPEVYVPTVFEN-YVADIEVD-----------GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV
KHFC-------------PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK-TKDGVREVFEMATRAALQA
>6IAN_E:AUTOPDB; Probability=99.7; Identities=15%; Resolution=3.2A; MatchedRegionTemplate=5-197; Intraflagellar transport protein 22; Intraflagellar transport protein 22, IFT74; HET: GTP, MSE; {Trypanosoma brucei brucei (strain 927/4 GUTat10.1)}
-----DDLVKILVLGPSKSGKSTVTNFLAGTRDTPTKEYHETNPLRVLEVEIALDDTRRSGRQAAGLKKAVVQLWDVGGSSKHQAGWPAIASNADGIIYVFNPEVKGSEKELL-LWYKNF
ALNQDELDDDNNFKMRVTDGHSLIFSHHSSLPEFAVGDNAIPP-----------MPPKQLQ-GIRALETSLDYQSDNFKEAFDALVEQIIA-
##### No 187 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYD-RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIIL
VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT---KDGVREVFEMATRAALQA
>2G77_B:AUTOPDB; Probability=99.7; Identities=25%; Resolution=2.26A; MatchedRegionTemplate=54-226; GTPase-activating protein GYP1, Ras-related protein; Protein transport, Gyp1 TBC domain; HET: MSE, GDP; {Saccharomyces cerevisiae}
---ARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRIL
VGNKCDLRSAIQVP------------TDLAQKFADTHS-MPLFETSAKNPNDNDHVEAIFMTLAHKLKS-
##### No 188 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVD-GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPI
ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3E5H_A:AUTOPDB; Probability=99.7; Identities=27%; Resolution=1.499A; MatchedRegionTemplate=9-179; Crystal Structure of Rab28 GTPase; Rab GTPase, SIGNALING PROTEIN, Cell; HET: GOL, GNP; {Homo sapiens}
----HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLV
ALVGNKIDLEHMRTIK------------PEKHLRFCQENG-FSSHFVSAKTGDSVFLCFQKVAAEILG-
##### No 189 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1ZD9_A:AUTOPDB; Probability=99.7; Identities=20%; Resolution=1.7A; MatchedRegionTemplate=34-200; ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking; HET: GDP; {Homo sapiens}
----SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR---KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLG
NKRDLPGALDEKE-LIE--------KMNLSAIQD-REICCYSISCKEKDNIDITLQWLIQHSKS-
##### No 190 #####
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>sequence1; MatchedRegionQuery=4-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6EKK_C:AUTOPDB; Probability=99.7; Identities=30%; Resolution=1.82A; MatchedRegionTemplate=4-169; DENN domain-containing protein 1A, Ras-related; DENND1A- DENN domain-containing protein 1A; HET: SO4, GDP, EDO; {Homo sapiens}
---DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVK-RWLHEINQNCDDVCRILVG
NKNDDPERKVVE------------TEDAYKFAGQMG-IQLFETSAKENVNVEEMFNCITELVL--
##### No 191 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2KSQ_A:AUTOPDB; Probability=99.7; Identities=16%; Resolution=NMR; MatchedRegionTemplate=14-180; ADP-ribosylation factor 1; ARF, myristoylated, myristoyl, GTP, bicelle; HET: GTP, MYR, MTN; {Saccharomyces cerevisiae}
---FGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTI-PTIG---FNVECVQYCNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFA
NKQDLPEAMSAAE-ITEK--------LGLHS-IRNRPWFIQATCATSGEGLYEGLEWLSNCLKN-
##### No 192 #####
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>sequence1; MatchedRegionQuery=9-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1R8S_A:AUTOPDB; Probability=99.7; Identities=17%; Resolution=1.46A; MatchedRegionTemplate=18-179; ADP-ribosylation factor 1/Cytohesin 2; PROTEIN TRANSPORT/EXCHANGE FACTOR, PROTEIN TRANSPORT-EXCHANGE; HET: GDP; {Bos taurus}
--------MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG---FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFA
NKQDLPNAMNAAE-ITD--------KLGLHSLRH-RNWYIQATCATSGDGLYEGLDWLSNQLRN-
##### No 193 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV----------YVPTVFENYV-ADI-EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID------SPDSLENIPEKW
TPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5YMX_A:AUTOPDB; Probability=99.7; Identities=26%; Resolution=1.35A; MatchedRegionTemplate=10-190; Mutual gliding-motility protein MglA (E.C.3.6.5.2); Small Ras-like GTPase, Cytosolic, Myxococcus; HET: GDP, IMD, MPD, EDO; {Myxococcus xanthus (strain DK 1622)}
----REINCKIVYYGPGLCGKTTNLQYIYNKTAAETKGKLISLSTETDRTLFFDFLPLSLGEIRGFKTRFHLYTVPGQVFYDASRKLILKGVDGVVFVADSQIERMEANMESLENLRI-N
LAEQGYDLNKIPYVIQYNKRDLPNAVT--------------VEEMRKALNHRN-IPEYQAVAPTGVGVFDTLKAVAKLVLT-
##### No 194 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4ZI2_A:AUTOPDB; Probability=99.7; Identities=18%; Resolution=2.2A; MatchedRegionTemplate=16-180; Arl3 (E.C.3.6.5.2.), CCDC104/BARTL1; Complex, Arf-like GTPase, GTP-binding, BART-like; HET: GNP; {Mus musculus}
----PDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGF---NIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFA
NKQDLLTAAPASEIAEG-----LNL----HT-IRDRVWQIQSCSALTGEGVQDGMNWVCKNVN--
##### No 195 #####
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>sequence1; MatchedRegionQuery=9-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5DE3_A:AUTOPDB; Probability=99.7; Identities=19%; Resolution=1.417A; MatchedRegionTemplate=17-177; ARF-like GTPase; G-protein, ADP ribosylation factor like; HET: GNP; {Chlamydomonas reinhardtii}
--------ARILVLGLDNAGKTTILKALSEEDITTITPT----QGFNIKSLSRDGFNLKIWDIGGQKSIRPYWRNYFDQTDALIYVIDSADSKRLSESEFELTELLQEEKMTGVPLLVFA
NKQDLVGALAA-DEIASTLD--------LTSI-RDRPWQIQACSAKQGTGLKEGMEWMMKQVK--
##### No 196 #####
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>sequence1; MatchedRegionQuery=8-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3Q7Q_A:AUTOPDB; Probability=99.7; Identities=25%; Resolution=2.3A; MatchedRegionTemplate=91-253; GTP-binding protein RAD; G-domain, G-protein, Cav2 beta, SIGNALING; HET: GNP; {Homo sapiens}
-------VYKVLLLGAPGVGKSALARIFGGVEDGPEAEA-AGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVG
NKSDLVRSREVS------------VDEGRACAVVFD-CKFIETSAALHHNVQALFEGVVRQIRL-
##### No 197 #####
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>sequence1; MatchedRegionQuery=4-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1KSH_A:AUTOPDB; Probability=99.7; Identities=15%; Resolution=1.8A; MatchedRegionTemplate=28-193; arf-like protein 2, RETINAL ROD; small GTPase, small GTP-binding protein; HET: GDP; {Mus musculus}
---QKERELRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLGFN---IKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFA
NKQDLPGALSC-NAIQEALE--------LDSIRS-HHWRIQGCSAVTGEDLLPGIDWLLDDIS--
##### No 198 #####
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>sequence1; MatchedRegionQuery=3-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLE--DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-------FCP
NVPIILV-GNKKD-LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK--------DGVREVFEMATRAALQA
>5U4U_A:AUTOPDB; Probability=99.7; Identities=16%; Resolution=1.9A; MatchedRegionTemplate=587-758; MGC81300 protein; GTPase, pseudoGTPase, G domain, Rho; HET: MLI; {Xenopus laevis}
--DPNVDRINLVILGRDGLARE--LANEIRALCTN----------DDKYVIDGKMYELSLRPIEGNVRLPVNSFQTS-TFQPHGCLCLYN--SKESLSYVVESIEKSRESSLGRKENHLI
NLPLTLILVNRRGDTSSETAH-----------SLIQHGQQVASKLQ-CVFLDAASTGLGYGRNINEKQISLILRGLLESKR--
##### No 199 #####
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>sequence1; MatchedRegionQuery=57-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5HZH_A:AUTOPDB; Probability=99.7; Identities=59%; Resolution=2.6A; MatchedRegionTemplate=206-332; Rac1 containing C450A mutant LOV2; Signaling protein, Photoswitch, Chimera; HET: FMN, GTP; {Homo sapiens}
--------------------------------------------------------NLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT
KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC-
##### No 200 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIE----------VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF
-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3BC1_E:AUTOPDB; Probability=99.7; Identities=28%; Resolution=1.8A; MatchedRegionTemplate=11-187; Ras-related protein Rab-27A (E.C.3.6.5.2), Synaptotagmin-like; Rab27, GTPase, Rab, signaling protein; HET: GNP; {Mus musculus}
----YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA
YSENPDIVLCGNKSDLEDQRAVK------------EEEARELAEKYG-IPYFETSAANGTNISHAIEMLLDLIM--
##### No 201 #####
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>sequence1; MatchedRegionQuery=6-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3BH7_A:AUTOPDB; Probability=99.7; Identities=19%; Resolution=1.9A; MatchedRegionTemplate=18-179; ADP-ribosylation factor-like protein 3, Protein; Protein-Protein complex, GTPase Activating protein; HET: GDP; {Mus musculus}
-----GSEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQG---FNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFA
NKQDLLTAAPASEIAEG-LN----L-----HTIRDRVWQIQSCSALTGEGVQDGMNWVCKN----
##### No 202 #####
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>sequence1; MatchedRegionQuery=4-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR-LRPLSYPDTDVILMCFSIDSPDS-LENIPEKWTPEVKHF---CPNVPI
ILVGNKKDLRNDEHTRRELAKMKQEP--VKP----------------------EEGRDMANRIGAFGYMECSAKTKDG------VREVFEMATRAALQA
>2FH5_B:AUTOPDB; Probability=99.7; Identities=14%; Resolution=2.45A; MatchedRegionTemplate=65-275; Signal recognition particle receptor alpha; Endomembrane targeting, GTPase, GAP, longin; HET: GTP; {Homo sapiens}
---RKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSL
LIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI----
##### No 203 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVD-GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVP
IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2HXS_A:AUTOPDB; Probability=99.7; Identities=28%; Resolution=1.1A; MatchedRegionTemplate=9-179; Ras-related protein Rab-28; GTPase, Ras, Rab, SIGNALING PROTEIN; HET: G3D; {Homo sapiens}
----HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLED-WYTVVKKVSEESETQPL
VALVGNKIDLEHMRTIK------------PEKHLRFCQENG-FSSHFVSAKTGDSVFLCFQKVAAEILG-
##### No 204 #####
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>sequence1; MatchedRegionQuery=3-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVD----------GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF
-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2F7S_A:AUTOPDB; Probability=99.7; Identities=28%; Resolution=2.7A; MatchedRegionTemplate=24-202; Ras-related protein Rab-27B; Rab27b, G-protein, Rab, Structural Genomics; HET: GDP; {Homo sapiens}
--GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA
YCENPDIVLIGNKADLPDQREVN------------ERQARELADKYG-IPYFETSAATGQNVEKAVETLLDLIM--
##### No 205 #####
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>sequence1; MatchedRegionQuery=8-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3Q72_A:AUTOPDB; Probability=99.7; Identities=25%; Resolution=1.655A; MatchedRegionTemplate=91-253; GTP-binding protein RAD; G-domain, G-protein, Cav2 beta, SIGNALING; HET: GNP; {Homo sapiens}
-------VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVG
NKSDLVRSREVSV------------DEGRACAVVFD-CKFIETSAALHHNVQALFEGVVRQIRL-
##### No 206 #####
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>sequence1; MatchedRegionQuery=8-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3Q7Q_B:AUTOPDB; Probability=99.7; Identities=25%; Resolution=2.3A; MatchedRegionTemplate=91-253; GTP-binding protein RAD; G-domain, G-protein, Cav2 beta, SIGNALING; HET: GNP; {Homo sapiens}
-------VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVG
NKSDLVRSREVSV------------DEGRACAVVFD-CKFIETSAALHHNVQALFEGVVRQIRL-
##### No 207 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5C1T_B:AUTOPDB; Probability=99.7; Identities=19%; Resolution=2.801A; MatchedRegionTemplate=240-400; Small GTPase EhRabX3; P-loop containing nucleotide triphosphate hydrolases; HET: GTP; {Entamoeba histolytica}
-----DIKIRMLMVGDQNVGKTTFIRKFALQDPTGHDFMN---AITTRFEMEKIKYEIIMIDWGFYNKLLQTNPAISRTIEAILIVYDITNEESFQNIHRKYYPLINNKFSDVAGVIVGY
KTDLEAQRKIT------------MGDALTLADWLG-YKYVEMSSKDTEDHSSIIKALAHSIR--
##### No 208 #####
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>sequence1; MatchedRegionQuery=5-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1M2O_B:AUTOPDB; Probability=99.7; Identities=18%; Resolution=2.5A; MatchedRegionTemplate=43-212; protein transport protein SEC23/GTP-binding protein; zinc-finger, beta barrel, vWA domain; HET: GNP; {Saccharomyces cerevisiae}
----WNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPT-W---HPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILG
NKIDAPNAVSE-AELRSALGL-LNTTGSQRIEGQ-RPVEVFMCSVVMRNGYLEAFQWLSQY----
##### No 209 #####
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>sequence1; MatchedRegionQuery=5-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILV
GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4V0K_B:AUTOPDB; Probability=99.7; Identities=19%; Resolution=1.438A; MatchedRegionTemplate=19-184; ARF-LIKE SMALL GTPASE; HYDROLASE; HET: GDP, CD; {CHLAMYDOMONAS REINHARDTII}
----ASKKVNVLVVGLDNSGKTTIIERLKPRPRQAAEVAPTVGF---TVDEVEKGPLTFTVFDMSGAGRYRTLWEQYYREADAVVFVVDSADKLRMVVARDEMEHMLKHSNMRKVPILYF
ANKKDLPVAMPPVEIAQA---------LGLDDIKD-RPWQIVPSNGLTGEGVDKGIDWLAERL---
##### No 210 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1FZQ_A:AUTOPDB; Probability=99.7; Identities=19%; Resolution=1.7A; MatchedRegionTemplate=14-179; ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 3; Protein-GDP complex without magnesium, ARF; HET: GDP, SO4, MES; {Mus musculus}
----PDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFN---IKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFA
NKQDLLTAAPASE-IAEG----LN-----LHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA-
##### No 211 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDG-KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVP
IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4CYM_B:AUTOPDB; Probability=99.7; Identities=22%; Resolution=2.8A; MatchedRegionTemplate=49-220; RAS-RELATED PROTEIN RAB-32 (E.C.3.6.5.2), ANKYRIN; TRANSPORT PROTEIN, VARP, RAB-EFFECTOR, RAB; HET: GCP; {HOMO SAPIENS}
----REHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGLERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIP
AVLLANKCDQNKDSSQ------------SPSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKIL--
##### No 212 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILV
GNKKDLRNDEHTRRELAKMKQEP---VKPEEGRDMAN---------RIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6FUF_B:AUTOPDB; Probability=99.7; Identities=15%; Resolution=3.117A; MatchedRegionTemplate=45-237; Rhodopsin, Guanine nucleotide-binding protein G(o); GPCR Complex Rhodopsin, SIGNALING PROTEIN; HET: RET, NAG; {Bos taurus}
----AAKDVKLLLLGADNSGKSTIVKQMKIIHEDGFSGRTRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVDLSDYNRMHESLMDFDSICNNKFFIDTSIILF
LNKKDLFGEKIKKSPLTICFPEYTGPNTYEDAAAYIQAQFESKNRSPNKEIYCHMTCATDTNNAQVIFDAVTDIIIA-
##### No 213 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYD-RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIIL
VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT---KDGVREVFEMATRAALQA
>1Z06_A:AUTOPDB; Probability=99.7; Identities=25%; Resolution=1.81A; MatchedRegionTemplate=47-219; Ras-related protein Rab-33B; Rab GTPase, Rab33b GTPase, vesicular; HET: GNP; {Mus musculus}
---SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRIL
VGNKCDLRSAIQVPT------------DLAQKFADTHS-MPLFETSAKNPNDNDHVEAIFMTLAHKLKS-
##### No 214 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3CPH_A:AUTOPDB; Probability=99.7; Identities=27%; Resolution=2.9A; MatchedRegionTemplate=36-201; Rab GDP-dissociation inhibitor, Ras-related protein; Rab GTPase, prenylation, vesicular transport; HET: GDP; {Saccharomyces cerevisiae}
----YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVG
NKSDMETRVVTA-------------DQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQE-
##### No 215 #####
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>sequence1; MatchedRegionQuery=8-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1R4A_B:AUTOPDB; Probability=99.7; Identities=17%; Resolution=2.3A; MatchedRegionTemplate=17-178; ADP-ribosylation factor-like protein 1/Golgi autoantigen; Ras-like G Protein structure, Three-helix; HET: GNP; {Rattus norvegicus}
-------EMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFN-V--ETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFA
NKQDMEQAMTPSEMANAL-------G--L-PALKDRKWQIFKTSATKGTGLDEAMEWLVETLK--
##### No 216 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--------PN
VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4BAS_A:AUTOPDB; Probability=99.7; Identities=16%; Resolution=2.0A; MatchedRegionTemplate=18-194; ADP-RIBOSYLATION FACTOR, PUTATIVE (SMALL GTPASE; HYDROLASE; HET: SO4, GNP; {TRYPANOSOMA BRUCEI TREU927}
---QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG--YNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGR
VPFLFFANKMDAAGAKTAAELVE--------ILDLTTLMGD-HPFVIFASNGLKGTGVHEGFSWLQETASR-
##### No 217 #####
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>sequence1; MatchedRegionQuery=3-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA--------------------------------------DIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV
ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3CLV_A:AUTOPDB; Probability=99.7; Identities=24%; Resolution=1.89A; MatchedRegionTemplate=2-204; Rab5 protein, putative; malaria, gtpase, Rab, structural genomics; HET: GDP; {Plasmodium falciparum}
--MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATC
AIVVFDISNSNTLDRAKTWVNQLKI--SSNYIIILVANKIDKNKFQVDIL-------------EVQKYAQDN-NLLFIQTSAKTGTNIKNIFYMLAEEIYK-
##### No 218 #####
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>sequence1; MatchedRegionQuery=4-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4DKX_A:AUTOPDB; Probability=99.7; Identities=28%; Resolution=1.9A; MatchedRegionTemplate=21-187; Ras-related protein Rab-6A; GTP binding fold, Membrane trafficking; HET: GDP; {Homo sapiens}
---NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVG
NKTDLADKRQVS------------IEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAALP--
##### No 219 #####
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>sequence1; MatchedRegionQuery=9-179
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2QTV_B:AUTOPDB; Probability=99.7; Identities=19%; Resolution=2.5A; MatchedRegionTemplate=24-188; Protein transport protein SEC23, Small; COPII coat, vesicular transport, Cytoplasmic; HET: GNP; {Saccharomyces cerevisiae}
--------GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTW--HPTSE--ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILG
NKIDAPNAVSEA-ELRSALGLL-NTTGSQRIEGQ-RPVEVFMCSVVMRNGYLEAFQWLSQ-----
##### No 220 #####
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>sequence1; MatchedRegionQuery=9-179
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6GNI_B:AUTOPDB; Probability=99.7; Identities=18%; Resolution=4.9A; MatchedRegionTemplate=24-188; Protein transport protein SEC23, Protein; COPII coat, membrane trafficking, protein; HET: GNP; {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
--------GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTW--HPTSE--ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILG
NKIDAPNAVSEAELRSALGL-L-NTTGSQRIEGQ-RPVEVFMCSVVMRNGYLEAFQWLSQ-----
##### No 221 #####
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>sequence1; MatchedRegionQuery=4-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1UPT_E:AUTOPDB; Probability=99.6; Identities=18%; Resolution=1.7A; MatchedRegionTemplate=15-180; ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 1, GOLGI; HYDROLASE/PROTEIN-BINDING, COMPLEX (GTPASE-GOLGIN), GOLGIN-245, GRIP; HET: GTP, MSE; {HOMO SAPIENS}
---HMTREMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFN-VE--TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFA
NKQDMEQAMTSSEMANS---------LGLPAL-KDRKWQIFKTSATKGTGLDEAMEWLVETLK--
##### No 222 #####
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>sequence1; MatchedRegionQuery=6-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYD-RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIIL
VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT---KDGVREVFEMATRAALQA
>6SUR_E:AUTOPDB; Probability=99.6; Identities=26%; Resolution=3.467A; MatchedRegionTemplate=32-202; Ras-related protein Rab-33B, Autophagy-related protein; Autophagy, cell cycle; HET: GTP; {Mus musculus}
-----SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGLERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRIL
VGNKCDLRSAIQVP------------TDLAQKFADTH-SMPLFETSAKNPNDNDHVEAIFMTLAHKLKS-
##### No 223 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6A8D_A:AUTOPDB; Probability=99.6; Identities=19%; Resolution=2.34A; MatchedRegionTemplate=18-183; Gamma glutamyl transpeptidase (E.C.2.3.2.2); Chlamydomonas reinhardtii, ARF, ADP-ribosylation factor; HET: GDP; {Chlamydomonas reinhardtii}
----GNREMRVVMLGLDAAGKTTILYKLHIGEVLTT-VPTIGFN-V--EKVQYKNVVFTVWDVGGQEKLRPLWRHYFNNTDGLIFVVDSQDRDRIGKAAQEFQAILQDPLMLHSAILVFA
NKQDMKGCLTPAE-VC--------TALGLSDMRTR-KWHVQSSVATRGEGLYEGLDWLATTLKN-
##### No 224 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHT--RRELAKMKQEPVK----------------PEEGRDM-----A---N----RIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5G53_C:AUTOPDB; Probability=99.6; Identities=12%; Resolution=3.4A; MatchedRegionTemplate=52-259; ADENOSINE RECEPTOR A2A, ENGINEERED DOMAIN; SIGNALING PROTEIN, G PROTEIN COUPLED; HET: GDP, NEC, SOG; {HOMO SAPIENS}
----YRATHRLLLLGADNSGKSTIVKQMRIYHGGSGGSGGTSGIFET--KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVDSSDYNRLQEALNDFKSIWNNRWLRTISVILFL
NKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENARRIFNDCRDIIQR-
##### No 225 #####
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>sequence1; MatchedRegionQuery=5-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2H18_A:AUTOPDB; Probability=99.6; Identities=20%; Resolution=1.902A; MatchedRegionTemplate=30-194; ADP-ribosylation factor-like protein 8A; GDP, GTPASE, MEMBRANE TRAFFICKING, Structural; HET: GDP; {Homo sapiens}
----WKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM---RKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLG
NKRDLPGALDEKELIEK---------MNLSAIQD-REICCYSISCKEKDNIDITLQWLIQHS---
##### No 226 #####
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>sequence1; MatchedRegionQuery=4-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV--ADIEVDGKQVELALWDTAGLE----DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-----
--------------CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6VIK_B:AUTOPDB; Probability=99.6; Identities=17%; Resolution=1.7A; MatchedRegionTemplate=31-229; Rab-like protein 3; Immune system, small GTPase; HET: GSP; {Mus musculus}
---ASLDRVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVHDYKEGTPEEKTYYIELWDVGGSVGSASSVKSTRAVFYNSVNGIILVHDLTNKKSSQNLYRWSLEVLNRDAVPTG
VLVTNGDYDREQFADNQIPLLVIGTKLDQIHETKRHEVLIRT-AFL--AEDF-NAEEINLDCTNPRSSAAGSSNAVKLSRFFDKVI---
##### No 227 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4P0T_B:AUTOPDB; Probability=99.6; Identities=13%; Resolution=1.493A; MatchedRegionTemplate=31-170; CENP-M; Mitosis, Kinetochore, CCAN, G-protein, cell; {Homo sapiens}
----GLNTATILLVGTEDALLQQLADSMLKED-------------------CASELKVHLAKSLPLPSSV-----NRPRIDLIVFVVNLHSKYSLQNTEESLRHVDASF-FLGKVCFLAT
GAGRESHCSI------------HRHTVVKLAHTYQ-SPLLYCDLEVEGFRATMAQRLVRVLQ--
##### No 228 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4WAU_B:AUTOPDB; Probability=99.6; Identities=13%; Resolution=2.2A; MatchedRegionTemplate=31-170; Centromere protein M; native-SAD, S-SAD, sulfur-SAD, sulfur SAD; {Homo sapiens}
----GLNTATILLVGTEDALLQQLADSMLKED-------------------CASELKVHLAKSLPLPSSV-----NRPRIDLIVFVVNLHSKYSLQNTEESLRHVDASF-FLGKVCFLAT
GAGRESHCSI------------HRHTVVKLAHTYQ-SPLLYCDLEVEGFRATMAQRLVRVLQ--
##### No 229 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6FAE_B:AUTOPDB; Probability=99.6; Identities=17%; Resolution=2.35A; MatchedRegionTemplate=57-222; IQ motif and SEC7 domain-containing; GTPase GEF, HYDROLASE; HET: EDO; {Homo sapiens}
----YFQSMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFA
NKQDLPNAMNAAEITD---------KLGLHSLRHR-NWYIQATCATSGDGLYEGLDWLSNQLRN-
##### No 230 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4WAU_A:AUTOPDB; Probability=99.6; Identities=13%; Resolution=2.2A; MatchedRegionTemplate=31-170; Centromere protein M; native-SAD, S-SAD, sulfur-SAD, sulfur SAD; {Homo sapiens}
----GLNTATILLVGTEDALLQQLADSMLKED-------------------CASELKVHLAKSLPLPSSV-----NRPRIDLIVFVVNLHSKYSLQNTEESLRHVDASF-FLGKVCFLAT
GAGRESHCSI------------HRHTVVKLAHTYQ-SPLLYCDLEVEGFRATMAQRLVRVLQ--
##### No 231 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE---NYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL
VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYMECSAKTKDGVREVFEMATRAALQA
>5KSP_B:AUTOPDB; Probability=99.6; Identities=16%; Resolution=2.162A; MatchedRegionTemplate=421-584; Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GDP; {Homo sapiens}
----QRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESEFLT----EAEIICDVVCLVYDVSNPKSFEYCARIFKQHFMD--SRIPCLI
VAAKSDLHEVKQEY------------SISPTDFCRKHKMPPPQAFTCNTADAPSKDIFVKLTTMAM--
##### No 232 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHT--RRELAKMKQEPVK----------------PEEGR-----DMAN-------RIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6LI3_A:AUTOPDB; Probability=99.6; Identities=13%; Resolution=3.32A; MatchedRegionTemplate=41-246; G-protein coupled receptor 52, Guanine; G-protein coupled receptor, orphan GPCR; {Homo sapiens}
-----RATHRLLLLGADNSGKSTIVKQMRILHGGSGGSGGTSGIFETK--FQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVDSSDYNRLQEALNLFKSIWNNRWLRTISVILFL
NKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENARRIFNDCRDIIQ--
##### No 233 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILV
GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1X3S_A:AUTOPDB; Probability=99.6; Identities=30%; Resolution=1.32A; MatchedRegionTemplate=13-179; Ras-related protein Rab-18; GTPase, Rab, GNP, Structural Genomics; HET: GNP; {Homo sapiens}
----VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV
GNKIDKENREVDR-------------NEGLKFARKH-SMLFIEASAKTCDGVQCAFEELVEKIIQ-
##### No 234 #####
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>sequence1; MatchedRegionQuery=4-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY-VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPII
LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2H57_B:AUTOPDB; Probability=99.6; Identities=14%; Resolution=2.0A; MatchedRegionTemplate=32-202; Crystal structure of human ADP-ribosylation; GTP, GTPASE, MEMBRANE TRAFFICKING, STRUCTURAL; HET: GTP; {Homo sapiens}
---RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS-I--EKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPIL
FFANKMDLRDAVTSVKVSQL-L--------CLENIK-DKPWHICASDAIKGEGLQEGVDWLQDQIQT-
##### No 235 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHT--RRELAKMKQEPVK----------------PEEGRDM-----A-------NRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>7D7M_D:AUTOPDB; Probability=99.6; Identities=13%; Resolution=3.3A; MatchedRegionTemplate=44-250; Prostaglandin E2 receptor EP4 subtype,Prostaglandin; prostaglandin E receptor, EP4, GPCR; HET: P2E; {Homo sapiens}
----YRATHRLLLLGADNSGKSTIVKQMRIYHGGSGGSGGTSGIFE--TKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVDSSDYNRLQEALNLFKSIWNNRWLRTISVILFL
NKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENARRIFNDCRDIIQ--
##### No 236 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEP---VKPEEGRDMANR---------IGAFGYMECSAKTKDGVREVFEMATRAALQA
>6G79_A:AUTOPDB; Probability=99.6; Identities=15%; Resolution=3.78A; MatchedRegionTemplate=31-220; Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit; G-protein coupled receptor, 5-HT1B, Mini-Go; HET: EP5; {Homo sapiens}
----AAKDVKLLLLGADNSGKSTIVKQMKIIHGGSGGSGGTTG--IVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVDLSDYNRMHESLMLFDSICNNKFFIDTSIILFL
NKKDLFGEKIKKSPLTICFPEYTGPNTYEDAAAYIQAQFESKNRSPNKEIYCHMTCATDTNNAQVIFDAVTDIIIA-
##### No 237 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVD-GKQVELALWDTAGLEDYDRLR---PLSYPDTDVILMCFSIDSP--DSLENIPEKWTPEVKHFCPNVP
IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR---IGAFGYMECSAKTKDGVREVFEMATRAALQA
>6S6D_C:AUTOPDB; Probability=99.6; Identities=14%; Resolution=2.5A; MatchedRegionTemplate=116-295; Ras-related GTP-binding protein A, Ras-related; small GTPases, mTORC1 activator, roadblock; HET: GTP, GDP, 9JE; {Homo sapiens}
----DSSKPRILLMGLRRSGKNSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSK-AYKVNPDMN
FEVFIHKVDGLSDDHKIETQRDIHQ-----RANDDLADAGLEKLHLSFYLTSIY-DHSIFEAFSKVVQKLI--
##### No 238 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEV-DGKQVELALWDTAGLEDYDRLR---PLSYPDTDVILMCFSIDSP--DSLENIPEKWTPEVKHFCPNV
PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR---IGAFGYMECSAKTKDGVREVFEMATRAALQA
>6S6A_C:AUTOPDB; Probability=99.6; Identities=14%; Resolution=2.63A; MatchedRegionTemplate=117-296; Ras-related GTP-binding protein A, Ras-related; small GTPases, mTORC1 activator, roadblock; HET: 9JE, GTP, GDP; {Homo sapiens}
----DSSKPRILLMGLRRSGKSSIQKVVFHKMSP-NENLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSK-AYKVNPDM
NFEVFIHKVDGLSDDHKIETQRDIHQ-----RANDDLADAGLEKLHLSFYLTSIY-DHSIFEAFSKVVQKLI--
##### No 239 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEV--DGKQVELALWDTAGLEDYDRLRPLSYP----DTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---
-----------------------------------------------------------PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR
EVFEMATRAALQA
>6F1Y_j:AUTOPDB; Probability=99.6; Identities=13%; Resolution=3.4A; MatchedRegionTemplate=52-292; Cytoplasmic dynein 1 heavy chain; Cryo-EM, Complex, MOTOR PROTEIN; {Homo sapiens}
-----PSGKNILVFGEDGSGKTTLMTKLQGAEHGKK---GRGLEYLYLSVHDEDRDDHTRCNVWILDGDLYHKGLLKFAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKM
KIPPEKMRELERKFVKDFQDYMEPEEGCQGSPQRRGPLTSGSDEENVALPLGDNVLTHNLGIPVLVVCTKCDAVSVLEKEHDYRDEH-LDFIQSHLRRFCLQYG-AALIYTSVKEEKNLD
LLYKYIVHKTY--
##### No 240 #####
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>sequence1; MatchedRegionQuery=5-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIE-----VDGKQVELALWDTAGLE----DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-
------------------CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI------GAFGYMECSAKTKDGVREVFEMATRAALQA
>6VIJ_A:AUTOPDB; Probability=99.6; Identities=17%; Resolution=1.95A; MatchedRegionTemplate=37-238; Rab-like protein 3; Immune system, small GTPase; HET: GDP; {Mus musculus}
----SLDRVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVDIRVHDYKEGTPEEKTYYIELWDVGGSVGSASSVKSTRAVFYNSVNGIILVHDLTNKKSSQNLYRWSLEVLNRDA
VPTGVLVTNGDYDREQFADNQIPLLVIGTKLDQIHETKRHEVLI----------RTAFLAEDFNAEEINLDCTNPRSSAAGSSNAVKLSRFFDKVI---
##### No 241 #####
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>sequence1; MatchedRegionQuery=5-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIE-----VDGKQVELALWDTAGLE----DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-
------------------CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI------GAFGYMECSAKTKDGVREVFEMATRAALQA
>6VIJ_B:AUTOPDB; Probability=99.6; Identities=17%; Resolution=1.95A; MatchedRegionTemplate=33-234; Rab-like protein 3; Immune system, small GTPase; HET: GDP; {Mus musculus}
----SLDRVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVDIRVHDYKEGTPEEKTYYIELWDVGGSVGSASSVKSTRAVFYNSVNGIILVHDLTNKKSSQNLYRWSLEVLNRDA
VPTGVLVTNGDYDREQFADNQIPLLVIGTKLDQIHETKRHEVLI----------RTAFLAEDFNAEEINLDCTNPRSSAAGSSNAVKLSRFFDKVI---
##### No 242 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--------RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN
VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2GJ8_B:AUTOPDB; Probability=99.6; Identities=21%; Resolution=1.7A; MatchedRegionTemplate=219-382; tRNA modification GTPase trmE; G-domain dimer, alpha-beta-sandwich, Hydrolase; HET: MSE, ALF, GDP; {Escherichia coli BL21(DE3)}
-----SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA-EIWPEFIARLPAK
LPITVVRNKADITGETLG-------------------MSEV-NGHALIRLSARTGEGVDVLRNHLKQSMG--
##### No 243 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--------RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN
VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2GJ8_D:AUTOPDB; Probability=99.6; Identities=21%; Resolution=1.7A; MatchedRegionTemplate=214-377; tRNA modification GTPase trmE; G-domain dimer, alpha-beta-sandwich, Hydrolase; HET: ALF, MSE, GDP; {Escherichia coli BL21(DE3)}
-----SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA-EIWPEFIARLPAK
LPITVVRNKADITGETLG-------------------MSEV-NGHALIRLSARTGEGVDVLRNHLKQSMG--
##### No 244 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--------RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN
VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2GJA_B:AUTOPDB; Probability=99.6; Identities=21%; Resolution=1.85A; MatchedRegionTemplate=216-379; tRNA modification GTPase trmE; G-domain dimer, alpha-beta-sandwich, HYDROLASE; HET: ALF, GDP; {Escherichia coli BL21(DE3)}
-----SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA-EIWPEFIARLPAK
LPITVVRNKADITGETLG-------------------MSEV-NGHALIRLSARTGEGVDVLRNHLKQSMG--
##### No 245 #####
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>sequence1; MatchedRegionQuery=6-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3O47_B:AUTOPDB; Probability=99.6; Identities=16%; Resolution=2.8A; MatchedRegionTemplate=163-327; ADP-ribosylation factor GTPase-activating protein 1; structural genomics consortium, GTPase activation; HET: GDP; {Homo sapiens}
-----KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGF---NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFA
NKQDLPNAMNAAE-ITD--------KLGLHSLRHR-NWYIQATCATSGDGLYEGLDWLSNQLRN-
##### No 246 #####
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>sequence1; MatchedRegionQuery=6-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-----------F
CPNVPIILVGNKKDLRNDEHTRRELAKMKQEP---VKPEEGRDMAN---------RIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6WWZ_A:AUTOPDB; Probability=99.6; Identities=16%; Resolution=3.34A; MatchedRegionTemplate=47-245; Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit; GPCR, Chemokine, Chemokine receptor, Complex; {Rattus norvegicus}
-----AKDVKLLLLGADNSGKSTIVKQMKIIHGGSGGSGGTTGIVE--THFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVDLSDYDQVLHEDETTNRMHESLMDFDSICNNKF
FIDTSIILFLNKKDLFGEKIKKSPLTICFPEYTGPNTYEDAAAYIQAQFESKNRSPNKEIYCHMTCATDTNNAQVIFDAVTDIIIA-
##### No 247 #####
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>sequence1; MatchedRegionQuery=5-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4WNR_A:AUTOPDB; Probability=99.6; Identities=19%; Resolution=2.9A; MatchedRegionTemplate=344-503; Mb Roco2 RocCORdC 287-629 (E.C.3.6.5.2.); Roco proteins, GAD, small G-protein; HET: SO4, GDP; {Methanosarcina barkeri}
----PLNEVKVLLVGDGEAGKTSLLKRLLGEGFDGNEHQTQGINIKKWGFKDKDKEIKVNFWDFGGQEIMHATHQFFLSKRSLYILVLDSRRDEKA----EYWLKHIRSFGGDSPVLVAL
NKIDENPSFELNR---K---------FLQEK--YPSIKGFFRISCKEDRGIEGFSQKLKKEL---
##### No 248 #####
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>sequence1; MatchedRegionQuery=8-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLSY--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN
VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3TAH_A:AUTOPDB; Probability=99.6; Identities=17%; Resolution=1.85A; MatchedRegionTemplate=2-160; Ferrous iron uptake transporter protein; G-protein, GTPase, Iron transport, Potassium; HET: BGO, GOL; {Streptococcus thermophilus}
-------MTEIALIGNPASGKTSLFNLITGHNQRVGNWPGVTVERK-SGLVK-KNKDLEIQDLPGIYSMSPYSPEEKVARDYLLSQRADSILNVVDATNLERNLY----LTTQLI--ETG
IPVTIALNMIDVLDGQGKKINV-------------DKLSYHL-GVPVVATSALKQTGVDQVVKKAAHT----
##### No 249 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPT-VFENYVADIEVDGKQVELALWDTAGLEDY-DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPII
LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2HT6_A:AUTOPDB; Probability=99.6; Identities=25%; Resolution=2.4A; MatchedRegionTemplate=74-243; GTP-binding protein GEM; small G-protein, signaling protein; HET: GDP; {Homo sapiens}
----GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII
LVGNKSDLVRCREVS------------VSEGRACAVVF-DCKFIETSAAVQHNVKELFEGIVRQVRL-
##### No 250 #####
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>sequence1; MatchedRegionQuery=7-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLSY--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN
VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3B1V_A:AUTOPDB; Probability=99.6; Identities=16%; Resolution=1.85A; MatchedRegionTemplate=2-162; Ferrous iron uptake transporter protein; G protein, iron transport, GTPase; HET: GGM; {Streptococcus thermophilus}
------SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERK-SGLV-KKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERNLYL----TTQLIE--TG
IPVTIALNMIDVLDGQGKKINV-------------DKLSYHL-GVPVVATSALKQTGVDQVVKKAAHTT---
##### No 251 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN---YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL
VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYMECSAKTKDGVREVFEMATRAALQA
>5KTY_A:AUTOPDB; Probability=99.6; Identities=16%; Resolution=2.522A; MatchedRegionTemplate=419-583; Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GDP; {Homo sapiens}
----QRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESEFLTE----AEIICDVVCLVYDVSNPKSFEYCARIFKQHFMD--SRIPCLI
VAAKSDLHEVKQE------------YSISPTDFCRKHKMPPPQAFTCNTADAPSKDIFVKLTTMAMY-
##### No 252 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRD---MANRIGAFGYMECSAKTKD------GVREVFEMATRAALQA
>6VS4_A:AUTOPDB; Probability=99.6; Identities=13%; Resolution=2.4A; MatchedRegionTemplate=35-215; Small COPII coat GTPase SAR1; SSGCID, COPII coat GTPase SAR1; HET: PEG, GDP; {Encephalitozoon cuniculi (strain GB-M1)}
-----GKPSSILFLGIDNAGKTTLVNKLKSDSTDVY-MPTHH-PSTSY--IEIGNLKAQVIDLGGHTAARLAWRDYFYDCHGIVFIVDVHDVERFQEVREAYETVLSL-EKRAPVVVLMN
KIDLEGHTPETAEADYQWKSWLSQETGIENQEDPERGQVVKIFYVTITSGSANSITGPLARAFKWLEAMIT--
##### No 253 #####
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>sequence1; MatchedRegionQuery=7-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLSY--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN
VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2WJI_A:AUTOPDB; Probability=99.6; Identities=14%; Resolution=1.903A; MatchedRegionTemplate=2-164; FERROUS IRON TRANSPORT PROTEIN B; MEMBRANE G-PROTEINS, FERROUS IRON TRANSPORT; HET: GNP; {METHANOCALDOCOCCUS JANNASCHII}
------KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKK-EGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLY----LTLQLME--MG
ANLLLALNKMDLAKSLGIEID-------------VDKLEKILG-VKVVPLSAAKKMGIEELKKAISIAVK--
##### No 254 #####
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>sequence1; MatchedRegionQuery=3-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2LKD_A:AUTOPDB; Probability=99.6; Identities=22%; Resolution=NMR; MatchedRegionTemplate=3-169; Translation initiation factor IF-2; TRANSLATION; HET: GDP; {Geobacillus stearothermophilus}
--HMVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHI-GAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTV-EAINH-AK--AANVPIIVAIN
KMDKPEANPDR-VMQELME----YNLVPE--EWGGDTIFCKLSAKTKEGLDHLLEMILLVS---
##### No 255 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL
VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4C0L_A:AUTOPDB; Probability=99.6; Identities=19%; Resolution=3.0A; MatchedRegionTemplate=448-611; MITOCHONDRIAL RHO GTPASE (E.C.3.6.5.-); HYDROLASE, MITOCHONDRIAL TRANSPORT, CALCIUM-BINDING GTPASE; HET: GDP, SO4; {DROSOPHILA MELANOGASTER}
----SRSVYKCHVIGPKGSGKTGMCRGFLVEDMHKLIGKEFKTNVVNCINSVQVYGQEKHLILRDIDVRHALDPLQP-QEVNCDVACLVYDSSNPRSFEYVARIYIKYYA--ESKIPVMI
VGTKCDMDERRQD------------YLMQPSEFCDKYKLLPPHLFSLKT--NKKELYTKLATMAA--
##### No 256 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVD-GKQVELALWDTAGLEDYDRLR---PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH---FCPN
VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR---IGAFGYMECSAKTKDGVREVFEMATRAALQA
>2Q3F_A:AUTOPDB; Probability=99.6; Identities=13%; Resolution=2.1A; MatchedRegionTemplate=43-221; Ras-related GTP-binding protein D; Structural Genomics, GTP-binding, RRAGD, Structural; HET: MSE, GNP; {Homo sapiens}
-----EVKPRILLMGLRRSGKSSIQKVVFH-KMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQIDFFDPTFDYEMIFRGTGALIFVIDSQDD-YMEAL-ARLHLTVTRAYKVNTD
INFEVFIHKVDGLSDDHKIETQRD-----IHQRANDDLADAGLEKIHLSFYLTSIY-DHSIFEAFSKVVQKLI--
##### No 257 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV--YVP-TVFENYVADIEVDGKQVELALWDTAGLEDY----------DRLRPLSYPD---TDVILMCFSIDSPDSLENIPEKWTP
EVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4DHE_A:AUTOPDB; Probability=99.6; Identities=13%; Resolution=2.2A; MatchedRegionTemplate=25-208; Probable GTP-binding protein EngB; melioidosis, RAS-like GTPase, cell division; {Burkholderia thailandensis}
-----TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGP-AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIE
WFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSL---DAYRD-AGYAGKLTVQLFSALKRTGLDDAHALIESWLR--
##### No 258 #####
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>sequence1; MatchedRegionQuery=6-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLSYP--DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN
VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2WJJ_B:AUTOPDB; Probability=99.6; Identities=14%; Resolution=2.405A; MatchedRegionTemplate=1-165; FERROUS IRON TRANSPORT PROTEIN B; METAL TRANSPORT, MEMBRANE G-PROTEINS, FERROUS; HET: MSE, GDP; {METHANOCALDOCOCCUS JANNASCHII}
-----MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEK-KEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLY----LTLQLME--MG
ANLLLALNKMDLAKSLGIEI-------------DVDKLEKILG-VKVVPLSAAKKMGIEELKKAISIAVKD-
##### No 259 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPE---VYVPTVFENYVADIEVDGKQVELALWDTAGLEDY----------DRLRPLSYPD---TDVILMCFSIDSPDSLENIPEKWTP
EVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4DHE_B:AUTOPDB; Probability=99.6; Identities=13%; Resolution=2.2A; MatchedRegionTemplate=25-208; Probable GTP-binding protein EngB; melioidosis, RAS-like GTPase, cell division; {Burkholderia thailandensis}
-----TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGP-AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIE
WFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSL---DAYRD-AGYAGKLTVQLFSALKRTGLDDAHALIESWLR--
##### No 260 #####
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>sequence1; MatchedRegionQuery=5-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEV-DGKQVELALWDTAGLEDYDRLR---PLSYPDTDVILMCFSIDSP--DSLENIPEKWTPEVKHFCPNV
PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR----IGAFGYMECSAKTKDGVREVFEMATRAALQA
>3LLU_A:AUTOPDB; Probability=99.6; Identities=13%; Resolution=1.4A; MatchedRegionTemplate=77-255; Ras-related GTP-binding protein C; Structural Genomics Consortium, SGC, GTP-binding; HET: GNP; {Homo sapiens}
----QGSKPRILLMGLRRSGKSSIQKVVFH-KMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSK-AYKVNPDM
NFEVFIHKVDGLSDDHKIETQRD-----IHQRANDDLADAGLEKLH-LSFYLTSIY-DHSIFEAFSKVVQKL---
##### No 261 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL
VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4C0K_A:AUTOPDB; Probability=99.6; Identities=19%; Resolution=2.801A; MatchedRegionTemplate=448-611; MITOCHONDRIAL RHO GTPASE (E.C.3.6.5.-); HYDROLASE, MITOCHONDRIAL TRANSPORT, CALCIUM-BINDING GTPASE; HET: SO4; {DROSOPHILA MELANOGASTER}
----SRSVYKCHVIGPKGSGKTGMCRGFLVEDMHKLIGKEFKTNVVNCINSVQVYGQEKHLILRDIDVRHALDPLQP-QEVNCDVACLVYDSSNPRSFEYVARIYIKYYA--ESKIPVMI
VGTKCDMDERRQD------------YLMQPSEFCDKYKLLPPHLFSLKT--NKKELYTKLATMAA--
##### No 262 #####
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>sequence1; MatchedRegionQuery=4-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF--EN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL
VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYMECSAKTKDGVREVFEMATRAALQA
>5KSO_A:AUTOPDB; Probability=99.6; Identities=16%; Resolution=2.25A; MatchedRegionTemplate=418-582; Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GDP; {Homo sapiens}
---TQRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESEFLTE----AEIICDVVCLVYDVSNPKSFEYCARIFKQHFMD--SRIPCLI
VAAKSDLHEVKQEY------------SISPTDFCRKHKMPPPQAFTCNTADAPSKDIFVKLTTMAM--
##### No 263 #####
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>sequence1; MatchedRegionQuery=3-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLSY--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN
VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2WJG_A:AUTOPDB; Probability=99.6; Identities=14%; Resolution=2.2A; MatchedRegionTemplate=-2-164; FERROUS IRON TRANSPORT PROTEIN B; MEMBRANE G-PROTEINS, FERROUS IRON TRANSPORT; HET: GDP; {METHANOCALDOCOCCUS JANNASCHII}
--GSHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVE-KKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYL----TLQLME--MG
ANLLLALNKMDLAKSLGIEID-------------VDKLEKILG-VKVVPLSAAKKMGIEELKKAISIAVK--
##### No 264 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-N-Y-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL
VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYMECSAKTKDGVREVFEMATRAALQA
>5KU1_A:AUTOPDB; Probability=99.6; Identities=16%; Resolution=2.501A; MatchedRegionTemplate=419-582; Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GDP; {Homo sapiens}
----QRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESEFLTE----AEIICDVVCLVYDVSNPKSFEYCARIFKQHFMD--SRIPCLI
VAAKSDLHEVKQE------------YSISPTDFCRKHKMPPPQAFTCNTADAPSKDIFVKLTTMAM--
##### No 265 #####
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>sequence1; MatchedRegionQuery=9-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLSY--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN
VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4NON_A:AUTOPDB; Probability=99.6; Identities=17%; Resolution=2.5A; MatchedRegionTemplate=2-160; Ferrous iron uptake transporter protein; G protein, iron transport, GTPase; HET: GDP; {Streptococcus thermophilus}
--------TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER-KSGLVK-KNKDLEIQDLPGIYSMSPYSPEEKVARDYLLSQRADSILNVVDATNLERNLYL----TTQLIE--TG
IPVTIALNMIDVLDGQGKKIN-------------VDKLSYHLG-VPVVATSSLKQTGVDQVVKKAAHTT---
##### No 266 #####
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>sequence1; MatchedRegionQuery=8-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV--PTVFEN-YVADIEV---DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP
IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD-GVREVFEMATRAALQA
>2ZEJ_B:AUTOPDB; Probability=99.6; Identities=21%; Resolution=2.0A; MatchedRegionTemplate=1337-1512; Leucine-rich repeat kinase 2 (E.C.2.7.11.1); Parkinson's Disease, LRRK2, ROC, GTPase; HET: GDP; {Homo sapiens}
-------RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP
VILVGTHLDVSDEKQRKACMSKITK------ELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESL--
##### No 267 #####
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>sequence1; MatchedRegionQuery=8-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENY-VADIEV---DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP
IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD-GVREVFEMATRAALQA
>2ZEJ_A:AUTOPDB; Probability=99.5; Identities=21%; Resolution=2.0A; MatchedRegionTemplate=1337-1511; Leucine-rich repeat kinase 2 (E.C.2.7.11.1); Parkinson's Disease, LRRK2, ROC, GTPase; HET: MSE, GDP; {Homo sapiens}
-------RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP
VILVGTHLDVSDEKQRKACMSKITK------ELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES---
##### No 268 #####
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>sequence1; MatchedRegionQuery=7-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLSY--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN
VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2WJH_B:AUTOPDB; Probability=99.5; Identities=14%; Resolution=2.1A; MatchedRegionTemplate=2-165; FERROUS IRON TRANSPORT PROTEIN B; METAL TRANSPORT, MEMBRANE G-PROTEINS, FERROUS; HET: GDP, FLC; {METHANOCALDOCOCCUS JANNASCHII}
------KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKK-EGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLY----LTLQLME--MG
ANLLLALNKMDLAKSLGIEID-------------VDKLEKILG-VKVVPLSAAKKMGIEELKKAISIAVKD-
##### No 269 #####
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>sequence1; MatchedRegionQuery=3-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY---------DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP
NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1EGA_B:AUTOPDB; Probability=99.5; Identities=15%; Resolution=2.4A; MatchedRegionTemplate=6-176; GTP-BINDING PROTEIN ERA; ERA, GTPASE, RNA-BINDING, RAS-LIKE, HYDROLASE; HET: SO4; {Escherichia coli}
--IDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPD--D-EMVLNKLRE--G
KAPVILAVNKVDNVQEKADLLP------------HLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL---
##### No 270 #####
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>sequence1; MatchedRegionQuery=3-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY---------DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP
NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3IEU_A:AUTOPDB; Probability=99.5; Identities=15%; Resolution=2.8A; MatchedRegionTemplate=6-176; GTP-binding protein era; ERA, GTPase, KH domain, GDP; HET: GDP, SO4; {Escherichia coli K-12}
--IDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPD--D-EMVLNKLRE--G
KAPVILAVNKVDNVQEKADLLP------------HLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL---
##### No 271 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3LVQ_E:AUTOPDB; Probability=99.5; Identities=20%; Resolution=3.38A; MatchedRegionTemplate=742-905; Arf-GAP with SH3 domain, ANK; Arf, GAP, GDP, ASAP3, UPLC1; HET: GDP; {Homo sapiens}
-----NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFN-V--ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA
NKQDLPDAMKPHE-IQ--------EKLGLTRIRDRN-WYVQPSCATSGDGLYEGLTWLTSNYK--
##### No 272 #####
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>sequence1; MatchedRegionQuery=3-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT-VFENYVADIEVDGKQVELALWDTAGLEDY----------DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF
CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI-GAFGYMECSAKTKDGVREVFEMATRAALQA
>3R9X_A:AUTOPDB; Probability=99.5; Identities=18%; Resolution=2.8A; MatchedRegionTemplate=3-178; GTPase Era, Ribosomal RNA small; GTPase, KH domain, ribosome, biogenesis; HET: MRD, GNP; {Aquifex aeolicus}
--HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIK--
PLNKPVIVVINKIDKIGPAKNVLPLI------------DEIHKKHPELTEIVPISALKGANLDELVKTILKYL---
##### No 273 #####
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>sequence1; MatchedRegionQuery=7-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-TVFENYVADIEVDGKQVELALWDTAGLEDY-------DRLRPLSYPDTDVILMCFSIDSPD---SLENIPEKWTPEVKHF
C---PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIG-AFGYMECSAKTKDGVREVFEMATRAALQA
>5M04_A:AUTOPDB; Probability=99.5; Identities=19%; Resolution=1.85A; MatchedRegionTemplate=175-350; GTPase ObgE/CgtA (E.C.3.6.5.-); GTPase, ObgE, CgtA, hydrolase; HET: GDP; {Escherichia coli DH5[alpha]}
------LLADVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRM-DNEKSFVVADIPGLIEGAAEGAGLGIRFLKHLERCRVLLHLIDIDPIDGTDPVENA-RIIISELEKY
SQDLATKPRWLVFNKIDLLDKVEAEEKA-------------KAIAEALGWEDKYYLISAASGLGVKDLCWDVMTFII--
##### No 274 #####
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>sequence1; MatchedRegionQuery=2-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL---RPLSYPDTDVILMCFSIDSP--DSLENIPEKWTPEVKHFCPN
VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4ARZ_B:AUTOPDB; Probability=99.5; Identities=13%; Resolution=3.1A; MatchedRegionTemplate=7-187; GTP-BINDING PROTEIN GTR1, GTP-BINDING PROTEIN; HYDROLASE, GTPASE, CELL GROWTH; HET: GTP, GDP; {SACCHAROMYCES CEREVISIAE}
-LEATDSKAMVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPS-L--EHF-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAM-IIEYAYKVNPS
INIEVLIHKVDGLSEDFKVDAQRDIMQRT--GEELLELGLDGVQVSFYLTSIFDH-SIYEAFSRIVQKLI--
##### No 275 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE---NYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL
VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYMECSAKTKDGVREVFEMATRAALQA
>5KSZ_A:AUTOPDB; Probability=99.5; Identities=16%; Resolution=2.5A; MatchedRegionTemplate=420-584; Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GCP; {Homo sapiens}
----QRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESEFLTE----AEIICDVVCLVYDVSNPKSFEYCARIFKQHFMD--SRIPCLI
VAAKSDLHEVKQE------------YSISPTDFCRKHKMPPPQAFTCNTADAPSKDIFVKLTTMAMY-
##### No 276 #####
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>sequence1; MatchedRegionQuery=80-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSP--DSLENIPEKWTPEVKHF-CPNVPIIL
VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3C5H_A:AUTOPDB; Probability=99.5; Identities=16%; Resolution=1.8A; MatchedRegionTemplate=167-258; Glucocorticoid receptor DNA-binding factor 1; ras, gtpase, glucorticoid receptor, Structural; HET: GNP; {Homo sapiens}
-------------------------------------------------------------------------------VDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVV
VLTKCDEGVERYIR--------------DAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID--
##### No 277 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY-VP-TVFENYVADIEVDGKQVELALWDTAGLEDYD-RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPII
LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2CJW_B:AUTOPDB; Probability=99.5; Identities=25%; Resolution=2.1A; MatchedRegionTemplate=72-241; GTP-BINDING PROTEIN GEM; G-PROTEIN, NUCLEOTIDE-BINDING, GTP-BINDING, SMALL GTPASE; HET: GDP, CAS; {HOMO SAPIENS}
----GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII
LVGNKSDLVRCREVS------------VSEGRACAVVF-DCKFIETSAAVQHNVKELFEGIVRQVRL-
##### No 278 #####
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>sequence1; MatchedRegionQuery=8-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLE--------DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN
VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5X4B_A:AUTOPDB; Probability=99.5; Identities=15%; Resolution=1.5A; MatchedRegionTemplate=3-162; GTPase Der; Ribosome biogenesis, Rossmann fold, GTPase; HET: GDP; {Bacillus subtilis (strain 168)}
-------KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGRE--GVTAADEEVAKILYR--TK
KPVVLAVNKLDNTEMRAN----------------IYDFYSL-GFGEPYPISGTHGLGLGDLLDAVAEH----
##### No 279 #####
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>sequence1; MatchedRegionQuery=3-127
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV--YVPTVFENYV-ADIEVD---GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDS-PDSLENIPEKWTPEVKHFCPNV
PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6VP6_B:AUTOPDB; Probability=99.5; Identities=25%; Resolution=3.47A; MatchedRegionTemplate=1672-1802; Leucine-rich repeat serine/threonine-protein kinase 2; Kinase, GTPase, SIGNALING PROTEIN; HET: GDP, TPO; {Homo sapiens}
--AVPYNRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAM-KPWLFNIKARASSS
PVILVGTHLDVSDE---------------------------------------------------------
##### No 280 #####
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>sequence1; MatchedRegionQuery=5-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLE----------DYDRLRPLSY---PDTDVILMCFSIDSPDSLENIPEKWTPEVK
HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1SUL_B:AUTOPDB; Probability=99.5; Identities=12%; Resolution=2.0A; MatchedRegionTemplate=20-193; Probable GTP-binding protein YsxC; GTP, GTPase, GTP-binding, HYDROLASE; {Bacillus subtilis}
----EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--IINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLK
Y--YGIPVIVIATKADKIPKGKWDKHAKVV---------RQTL-NIDPEDELILFSSETKKGKDEAWGAIKKMI---
##### No 281 #####
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>sequence1; MatchedRegionQuery=5-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLE----------DYDRLRPLSY---PDTDVILMCFSIDSPDSLENIPEKWTPEVK
HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1SVI_A:AUTOPDB; Probability=99.5; Identities=12%; Resolution=1.95A; MatchedRegionTemplate=20-193; GTP-binding protein YsxC; YsxC, ENGB, GTPase, GTP-binding protein; HET: GDP; {Bacillus subtilis}
----EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--IINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLK
Y--YGIPVIVIATKADKIPKGKWDKHAKVV---------RQTL-NIDPEDELILFSSETKKGKDEAWGAIKKMI---
##### No 282 #####
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>sequence1; MatchedRegionQuery=5-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRP-----------LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF
CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3J8G_X:AUTOPDB; Probability=99.5; Identities=20%; Resolution=5.0A; MatchedRegionTemplate=199-372; PROTEIN/RNA Complex; Ribosome assembly, EngA, Der, YphC; {Escherichia coli K12}
----QSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDL-SLLGFILN--
-SGRSLVIVVNKWDGLSQEVKEQ-VKETL---------DFRLGFIDFARVHFISALHGSGVGNLFESVREAY---
##### No 283 #####
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>sequence1; MatchedRegionQuery=5-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLR-----------PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF
CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5DN8_A:AUTOPDB; Probability=99.5; Identities=17%; Resolution=1.76A; MatchedRegionTemplate=174-347; GTPase Der; GTP-binding protein, GDP, Complex, Structural; HET: GDP; {Coxiella burnetii (strain RSA 493 / Nine Mile phase I)}
----KEVGIKIAMIGRPNVGKSTLINRLLGEERVIVYDQPGTTRDSIYIPFARNDENYTLIDTAGIRRRAKIQDYVEKFSMIKSLQAMHAADVVIFLLDARQGVTEQDL-RLLNRIVE--
-AGVSLIIAVNKWDGLNIEERDNVRN----------AIDRRMPFVDFARRYFISALHGTGVGKLFRAIQESY---
##### No 284 #####
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>sequence1; MatchedRegionQuery=9-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGLED-------YDRLRPLSYPDTDVILMCFSIDSPDSLENIP--EKWTPEVKHF-
--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1LNZ_A:AUTOPDB; Probability=99.5; Identities=19%; Resolution=2.6A; MatchedRegionTemplate=160-330; SPO0B-associated GTP-binding protein; GTPase, Obg, stringent factor, stress; HET: G4P; {Bacillus subtilis}
--------ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVET-DDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYN
LRLTERPQIIVANKMDMPEAAENLEAF------------KEKL-T--DDYPVFPISAVTREGLRELLFEVANQLE--
##### No 285 #####
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>sequence1; MatchedRegionQuery=7-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDY-------DRLRPLSYPDTDVILMCFSIDSPD---SLENIPEKWTPEVKHF
CP---NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIG-AFGYMECSAKTKDGVREVFEMATRAALQA
>4CSU_9:AUTOPDB; Probability=99.5; Identities=19%; Resolution=5.5A; MatchedRegionTemplate=161-336; 50S RIBOSOMAL PROTEIN L28, 50S; (P)PPGPP, OBG, RIBOSOME ASSEMBLY, STRINGENT; {ESCHERICHIA COLI}
------LLADVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRM-DNEKSFVVADIPGLIEGAAEGAGLGIRFLKHLERCRVLLHLIDIDPIDGTDPVENA-RIIISELEKY
SQDLATKPRWLVFNKIDLLDKVEAEEKAK-------------AIAEALGWEDKYYLISAASGLGVKDLCWDVMTFII--
##### No 286 #####
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>sequence1; MatchedRegionQuery=3-164
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGL--EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--------C
PNVPIILV-GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5U4V_A:AUTOPDB; Probability=99.5; Identities=20%; Resolution=2.6A; MatchedRegionTemplate=596-740; Rho GTPase-activating protein 5; GTPase, pseudoGTPase, G domain, Rho; {Homo sapiens}
--STNIDKVNLFILGKDGLAQE-LANEI-RTQSTD-----------DEYALDGKIYELDLRPVDAKSPYFLSQLWTAA-FKPHGCFCVFN--SIESLSFIGEFIGKIRTEASQIRKDKYM
ANLPFTLILANQRDSISKNLP-----------ILRHQGQQLANKLQ-CPFVDVPA--------------------
##### No 287 #####
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>sequence1; MatchedRegionQuery=4-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENY-VADIEV---DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP
IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI---GAFGYMECSAKTKD-GVREVFEMATRAALQA
>6OJF_A:AUTOPDB; Probability=99.5; Identities=21%; Resolution=1.6A; MatchedRegionTemplate=1347-1525; Leucine-rich repeat serine/threonine-protein kinase 2; Parkinson's disease, LRRK2, GTPase, Dimer; HET: GDP; {Homo sapiens}
---VPYNRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP
VILVGTHLDVSDEAQRAACMSKI---------TKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES---
##### No 288 #####
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>sequence1; MatchedRegionQuery=4-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENY-VADIEV---DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP
IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI---GAFGYMECSAKTKD-GVREVFEMATRAALQA
>6OJF_B:AUTOPDB; Probability=99.5; Identities=21%; Resolution=1.6A; MatchedRegionTemplate=1347-1525; Leucine-rich repeat serine/threonine-protein kinase 2; Parkinson's disease, LRRK2, GTPase, Dimer; HET: GDP; {Homo sapiens}
---VPYNRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP
VILVGTHLDVSDEAQRAACMSKI---------TKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES---
##### No 289 #####
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>sequence1; MatchedRegionQuery=6-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-TVFENYVADIEVDGKQVELALWDTAGLEDY----------DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF
CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI-GAFGYMECSAKTKDGVREVFEMATRAALQA
>3IEV_A:AUTOPDB; Probability=99.5; Identities=18%; Resolution=1.9A; MatchedRegionTemplate=7-179; GTP-binding protein era/RNA complex; ERA, GTPase, KH domain, anti-SD; HET: GNP; {Aquifex aeolicus}
-----MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIK--
PLNKPVIVVINKIDKIGPAKNVLPLI---------D---EIHKKHPELTEIVPISALKGANLDELVKTILKYL---
##### No 290 #####
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>sequence1; MatchedRegionQuery=10-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL---RPLSYPDTDVILMCFSIDSP--DSLENIPEKWTPEVKHFCPN
VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3R7W_B:AUTOPDB; Probability=99.5; Identities=13%; Resolution=2.773A; MatchedRegionTemplate=12-184; GTP-binding protein GTR1, GTP-binding protein; Rag GTPases, Gtr1p, Gtr2p, mTOR; HET: MSE, GNP; {Saccharomyces cerevisiae}
---------MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPS-LE--HF-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEY-AYKVNPS
INIEVLIHKVDGLSEDFKVDAQRDIMQRT-G-EELLELGLDGVQVSFYLTSIFDH-SIYEAFSRIVQKLI--
##### No 291 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED----------YDRLRPLSYPDTDVILMCFSIDSPDS-LENIPEKWTPEVKHF
CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3PQC_A:AUTOPDB; Probability=99.5; Identities=18%; Resolution=1.9A; MatchedRegionTemplate=21-194; Probable GTP-binding protein engB; Rossmann Fold, GTPase, GTP binding; HET: GDP, PEG; {Thermotoga maritima}
----PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPG-K--TRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-
-LNIPFTIVLTKMDKVKMSERAKKLE----------EHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK--
##### No 292 #####
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>sequence1; MatchedRegionQuery=56-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD----------SLENIPEKWTPEVKHFC
-PNVPIILVGNKKDLRNDEHTRRELAKMKQE---PVKPEEGRDMANR----------IGAFGYMECSAKTKDGVREVFEMATRAALQA
>6OT0_A:AUTOPDB; Probability=99.5; Identities=16%; Resolution=3.9A; MatchedRegionTemplate=194-345; Smoothened homolog, Guanine nucleotide-binding protein; GPCR, Complex, Hedgehog signaling, SIGNALING; HET: CO1; {Homo sapiens}
-------------------------------------------------------LHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHASMKLFDSICNNKW
FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCSTDTKNVQFVFDAVTDVIIK-
##### No 293 #####
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>sequence1; MatchedRegionQuery=7-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDY------DRLRPLSYPD--TDVILMCFSIDSPDSLENIPEKWTPEVKHFCP
NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3W5I_B:AUTOPDB; Probability=99.5; Identities=18%; Resolution=2.15A; MatchedRegionTemplate=2-164; Ferrous iron transport protein B; G PROTEIN, IRON TRANSPORT, GTPASE; HET: SO4; {Gallionella capsiferriformans}
------QFKRIALLGMPNTGKSTLFNRMTGGAARVGNWPGITVELLSGKILL--GADMVEIIDLPGIYDLHGFSDDEQVVRHFLHDNVPDLALVILNATQIERQMS----LLLQLKQ--L
NMNIVVLLNMSDEAKQYGITI-------------DSRKMSELLQ-IPVFQLSGKYGTGYQEALQAVTRALR--
##### No 294 #####
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>sequence1; MatchedRegionQuery=7-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYD------RLRPLSYPD--TDVILMCFSIDSPDSLENIPEKWTPEVKHFCP
NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3W5J_A:AUTOPDB; Probability=99.5; Identities=18%; Resolution=1.932A; MatchedRegionTemplate=1-163; Ferrous iron transport protein B; G PROTEIN, IRON TRANSPORT, GTPASE; HET: GDP; {Gallionella capsiferriformans}
------QFKRIALLGMPNTGKSTLFNRMTGGAARVGNWPGITVELLSGKILL--GADMVEIIDLPGIYDLHGFSDDEQVVRHFLHDNVPDLALVILNATQIERQMS----LLLQLKQ--L
NMNIVVLLNMSDEAKQYGITI-------------DSRKMSELL-QIPVFQLSGKYGTGYQEALQAVTRALR--
##### No 295 #####
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>sequence1; MatchedRegionQuery=9-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------------LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH
FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3IBY_D:AUTOPDB; Probability=99.5; Identities=13%; Resolution=2.5A; MatchedRegionTemplate=3-166; Ferrous iron transport protein B; G protein, G domain, iron; {Legionella pneumophila}
--------THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEK-KTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTS----QLF-
-ELGKPVVVALNMMDIAEHRGISID-------------TEKLESLLG-CSVIPIQAHKNIGIPALQQSLLHCS---
##### No 296 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR---------LRPLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFC
PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR-IGAFGYMECSAKTKDGVREVFEMATRAALQA
>2QU8_A:AUTOPDB; Probability=99.5; Identities=18%; Resolution=2.01A; MatchedRegionTemplate=47-225; Putative nucleolar GTP-binding protein 1; GTPase, malaria, plasmodium falciparum, Structural; HET: GDP; {Plasmodium falciparum}
----NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNL-YVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF
SNKSIVIGFNKIDKCNMDSLSIDNK---------LLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLK--
##### No 297 #####
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>sequence1; MatchedRegionQuery=9-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------------LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH
FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3IBY_B:AUTOPDB; Probability=99.5; Identities=13%; Resolution=2.5A; MatchedRegionTemplate=3-166; Ferrous iron transport protein B; G protein, G domain, iron; {Legionella pneumophila}
--------THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVE-KKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTS----QLFE
--LGKPVVVALNMMDIAEHRGISID-------------TEKLESLLG-CSVIPIQAHKNIGIPALQQSLLHCS---
##### No 298 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED----------YDRLRPLSYPDTDVILMCFSIDSPD-SLENIPEKWTPEVKHF
CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3PQC_B:AUTOPDB; Probability=99.5; Identities=17%; Resolution=1.9A; MatchedRegionTemplate=21-194; Probable GTP-binding protein engB; Rossmann Fold, GTPase, GTP binding; HET: PEG, GDP; {Thermotoga maritima}
----PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPG-K--TRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-
-LNIPFTIVLTKMDKVKMSERAKKLEE----------HRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK--
##### No 299 #####
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>sequence1; MatchedRegionQuery=55-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI----------DSPDSLENIPEKWTPEVKHF-
CPNVPIILVGNKKDLRNDEHTRRELAKMKQE----PVKPEEGRDMA---------NRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5DO9_C:AUTOPDB; Probability=99.5; Identities=19%; Resolution=2.6A; MatchedRegionTemplate=198-350; Guanine nucleotide-binding protein G(q) subunit; GTP-Binding Protein alpha subunits, Gq-G11; HET: ALF, GDP; {Mus musculus}
------------------------------------------------------SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW
FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ-
##### No 300 #####
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>sequence1; MatchedRegionQuery=7-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRL-------RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF---
CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1UDX_A:AUTOPDB; Probability=99.5; Identities=22%; Resolution=2.07A; MatchedRegionTemplate=156-323; the GTP-binding protein Obg; GTP-binding protein, Obg, TGS domain; {Thermus thermophilus}
------LIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEV-SEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADE-PLKTL-ETLRKEVGAYDPA
LLRRPSLVALNKVDLLEEEAVKA-LA-------------DALAR-EGLAVLPVSALTGAGLPALKEALHALV---
##### No 301 #####
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>sequence1; MatchedRegionQuery=56-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD----------SLENIPEKWTPEVKHF-
CPNVPIILVGNKKDLRNDEHTRRELAKMKQ---EPVKPEEGRDMAN--------R--IGAFGYMECSAKTKDGVREVFEMATRAALQA
>1SHZ_D:AUTOPDB; Probability=99.5; Identities=17%; Resolution=2.85A; MatchedRegionTemplate=224-375; Guanine Nucleotide-Binding Protein Galpha(13):Galpha(i1) Chimera; SIGNAL TRANSDUCTION, PROTEIN COMPLEX, SIGNALING; HET: ALF, GDP; {Mus musculus, Rattus norvegicus}
-------------------------------------------------------LHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQTNRMHESMKLFDSICNNKW
FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK-
##### No 302 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI---------EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP
NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6HLU_A:AUTOPDB; Probability=99.5; Identities=21%; Resolution=3.29A; MatchedRegionTemplate=479-647; PROTEIN; GTPase, LRRK2, Roco proteins, hydrolase; {Chlorobaculum tepidum}
-----LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNK----HYWLRHIEKYGG
KSPVIVVMNKIDENPSYNIEQ------------KKINERFPAI-ENRFHRISCKNGDGVESIAKSLKSAVL--
##### No 303 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD------RLRPLSYP--DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN
VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3A1W_A:AUTOPDB; Probability=99.5; Identities=16%; Resolution=1.9001A; MatchedRegionTemplate=17-180; Iron(II) transport protein B; FeoB, iron transporter, small GTPase; {Thermotoga maritima}
-----LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGV-TVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLY---LLLEIL---EME
KKVILAMTAIDEAKKTGMKID-------------RYELQKHLG-IPVVFTSSVTGEGLEELKEKIVEYAQ--
##### No 304 #####
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>sequence1; MatchedRegionQuery=56-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD----------SLENIPEKWTPEVKHFC
-PNVPIILVGNKKDLRNDEHTRRELAKMKQEP----VKPEEGRDMANR---------IGAFGYMECSAKTKDGVREVFEMATRAALQA
>1ZCA_A:AUTOPDB; Probability=99.5; Identities=20%; Resolution=2.9A; MatchedRegionTemplate=252-403; Galphai/12; GTP-binding, Lipoprotein, Membrane, Palmitate, Transducer; HET: GDP, ALF; {Mus musculus}
-------------------------------------------------------IPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRLVESMNIFETIVNNKL
FFNVSIILFLNKMDLLVEKVKSVSIKKHFPDFKGDPHRLEDVQRYLVQCFDRKRRNRSKPLFHHFTTAIDTENIRFVFHAVKDTILQ-
##### No 305 #####
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>sequence1; MatchedRegionQuery=11-125
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4FMC_F:AUTOPDB; Probability=99.5; Identities=32%; Resolution=2.8A; MatchedRegionTemplate=14-129; ROrf2, Ras-related protein Rab-1A; alpha-beta fold, Rab1-GAP, Rab1, PROTEIN; HET: PGE, AF3, GDP; {Escherichia coli}
----------LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG
NKCDLT-----------------------------------------------------------
##### No 306 #####
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>sequence1; MatchedRegionQuery=4-126
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADI----------------EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT
PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4TMW_B:AUTOPDB; Probability=99.5; Identities=19%; Resolution=1.55A; MatchedRegionTemplate=519-654; eIF5B; Translation factor, GTPase, Subunit joining; HET: GTP; {Chaetomium thermophilum}
---DNLRSPICCILGHVDTGKTKLLDKIRQTNVQEGEAGGITQQIGATYFPVEAIKQKTAVVNKDGKFEFKVPGLLIIDTPGHESFSNLRSRGSSLCNIAILVVDIMHGLEPQTI-ESLR
-LLRE--RKTPFVVALNKIDRLY----------------------------------------------------------
##### No 307 #####
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>sequence1; MatchedRegionQuery=4-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLED----------YDRLRPLSYPD---TDVILMCFSIDSPDSLENIPEKWTPEV
KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1PUI_A:AUTOPDB; Probability=99.5; Identities=14%; Resolution=2.0A; MatchedRegionTemplate=32-208; Probable GTP-binding protein engB; STRUCTURAL GENOMICS, NYSGXRC T16, GTPASE; HET: SO4; {Escherichia coli}
---PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV---ADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWA
VD--SNIAVLVLLTKADKLASGARKAQLNMVR---------EAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS--
##### No 308 #####
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>sequence1; MatchedRegionQuery=6-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD------RLRPLSYP--DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN
VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3A1S_B:AUTOPDB; Probability=99.5; Identities=16%; Resolution=1.5A; MatchedRegionTemplate=14-176; Iron(II) transport protein B; FeoB, iron transporter, small GTPase; HET: MPD, MSE, GDP; {Thermotoga maritima}
-----LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEK-KEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLY---LLLEIL---EME
KKVILAMTAIDEAKKTGMKIDR-------------YELQKHLG-IPVVFTSSVTGEGLEELKEKIVEYA---
##### No 309 #####
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>sequence1; MatchedRegionQuery=6-127
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVG
NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5DI3_B:AUTOPDB; Probability=99.5; Identities=18%; Resolution=2.5A; MatchedRegionTemplate=18-136; ADP-ribosylation factor-like protein 13B, ARF-like; G-protein, ADP ribosylation like protein; HET: GNP; {Chlamydomonas reinhardtii}
-----PRKITIALLGLDNAGKTTLLNSIQGEVDRDT-TPTFGFN---STTLNEGKYKIEVFDLGGGKNIRGVWKKYLAEVHAIVYVVDAADPGRFEESKMTMAEVLENQFMRDKPICIFA
NKQDLPTA---------------------------------------------------------
##### No 310 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DI--------EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP
NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3DPU_B:AUTOPDB; Probability=99.5; Identities=21%; Resolution=2.9A; MatchedRegionTemplate=455-623; Rab family protein; RocCOR, G-domain, COR, GTP-binding, Nucleotide-binding; {Chlorobaculum tepidum}
-----LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNK----HYWLRHIEKYGG
KSPVIVVMNKIDENPSYNIEQ------------KKINERFPAI-ENRFHRISCKNGDGVESIAKSLKSAVL--
##### No 311 #####
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>sequence1; MatchedRegionQuery=5-127
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV--YVPTVFENY-VADIEVD---GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDS-PDSLENIPEKWTPEVKHFCPNV
PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6VP8_A:AUTOPDB; Probability=99.5; Identities=25%; Resolution=3.5A; MatchedRegionTemplate=1331-1459; Leucine-rich repeat serine/threonine-protein kinase 2; Kinase, GTPase, SIGNALING PROTEIN; HET: TPO; {Homo sapiens}
----PYNRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAM-KPWLFNIKARASSS
PVILVGTHLDVSDE---------------------------------------------------------
##### No 312 #####
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>sequence1; MatchedRegionQuery=55-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI----------DSPDSLENIPEKWTPEVKHFC
-PNVPIILVGNKKDLRNDEHTRREL----AKMKQEPVKPEEGRDM--------A-NRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3AH8_A:AUTOPDB; Probability=99.5; Identities=18%; Resolution=2.9A; MatchedRegionTemplate=206-358; Guanine nucleotide-binding protein G(i) subunit; Heterotrimeric G protein, GTPase, Galpha-q; HET: GDP; {Chromobacterium sp.}
------------------------------------------------------SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW
FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ-
##### No 313 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY-VPT-VFENYVADIEVDGKQVELALWDTAGLEDYD-RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPII
LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2G3Y_A:AUTOPDB; Probability=99.5; Identities=24%; Resolution=2.4A; MatchedRegionTemplate=106-274; GTP-binding protein GEM; GEM, small GTPase, GDP, inactive; HET: GDP; {Homo sapiens}
----GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII
LVGNKSDLVRCREVSVSE------------GRACAVVF-DCKFIETSAAVQHNVKELFEGIVRQVR--
##### No 314 #####
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>sequence1; MatchedRegionQuery=4-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR--------LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN
VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1WF3_A:AUTOPDB; Probability=99.5; Identities=18%; Resolution=1.88A; MatchedRegionTemplate=5-172; GTP-binding protein; GTP-binding protein, GTPase, RIKEN Structural; HET: GNP, GOL; {Thermus thermophilus}
---EKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGK
VPILLVGNKLDAAKYPEEA--MKA----------YH---ELLPEAEPRMLSALDERQVAELKADLLAL----
##### No 315 #####
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>sequence1; MatchedRegionQuery=56-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKHFC
-PNVPIILVGNKKDLRNDEHTRRELAKMKQ---EPVKPEEGRD-----MAN---------------------RIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4FID_A:AUTOPDB; Probability=99.5; Identities=14%; Resolution=2.62A; MatchedRegionTemplate=182-349; G protein alpha subunit; RAS-LIKE DOMAIN, ALL-HELICAL DOMAIN, GTP; HET: GDP; {Entamoeba histolytica}
-------------------------------------------------------IPFHLIDVGGQRSERKKWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF
LKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK-
##### No 316 #####
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>sequence1; MatchedRegionQuery=55-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDS----------LENIPEKWTPEVKHF-
CPNVPIILVGNKKDLRNDEHTRRELAKMKQE---PVKPEEGRDMANRI----------GAFGYMECSAKTKDGVREVFEMATRAALQA
>4N0D_A:AUTOPDB; Probability=99.5; Identities=17%; Resolution=1.55A; MatchedRegionTemplate=226-378; Guanine nucleotide-binding protein G(i) subunit; Rossmann fold, Guanine nucleotide binding; HET: GSP; {Rattus norvegicus}
------------------------------------------------------DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW
FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIL-
##### No 317 #####
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>sequence1; MatchedRegionQuery=55-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD----------SLENIPEKWTPEVKHF-
CPNVPIILVGNKKDLRNDEHTRRELAKMK---QEPVKPEEGRDMANR----------IGAFGYMECSAKTKDGVREVFEMATRAALQA
>1SVS_A:AUTOPDB; Probability=99.5; Identities=16%; Resolution=1.5A; MatchedRegionTemplate=223-375; Guanine nucleotide-binding protein G(i), alpha-1; Gi alpha subunit, K180P mutation; HET: GNP; {Rattus norvegicus}
------------------------------------------------------DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW
FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK-
##### No 318 #####
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>sequence1; MatchedRegionQuery=6-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIE--------VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP
NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3DPU_A:AUTOPDB; Probability=99.5; Identities=21%; Resolution=2.9A; MatchedRegionTemplate=458-625; Rab family protein; RocCOR, G-domain, COR, GTP-binding, Nucleotide-binding; {Chlorobaculum tepidum}
-----LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNK----HYWLRHIEKYGG
KSPVIVVMNKIDENPSYNIEQ--K----------KINERFPAI-ENRFHRISCKNGDGVESIAKSLKSAV---
##### No 319 #####
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>sequence1; MatchedRegionQuery=56-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI----------DSPDSLENIPEKWTPEVKHF-
CPNVPIILVGNKKDLRNDEHTRR--------------ELAKMKQEPVKPEEGRDMA-NRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4EKC_C:AUTOPDB; Probability=99.5; Identities=17%; Resolution=7.4A; MatchedRegionTemplate=223-374; Guanine nucleotide-binding protein G(q) subunit; GTP-binding protein fold, Regulator, G; HET: ALF, GDP; {Mus musculus}
-------------------------------------------------------VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW
FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAARE-FI-LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ-
##### No 320 #####
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>sequence1; MatchedRegionQuery=56-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD----------SLENIPEKWTPEVKHFC
-PNVPIILVGNKKDLRNDEHTRRELAKMKQEP----VKPEEGRDMAN----------RIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1ZCB_A:AUTOPDB; Probability=99.5; Identities=19%; Resolution=2.0A; MatchedRegionTemplate=246-398; G alpha i/13; GTP-binding, Lipoprotein, Membrane, Transducer, SIGNALING; HET: GDP; {Mus musculus}
-------------------------------------------------------VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV
FSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH-
##### No 321 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV--PTVFENYVADIEVDGKQVELALWDTAGLED----------YD-RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK
HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5M7H_A:AUTOPDB; Probability=99.5; Identities=16%; Resolution=3.15A; MatchedRegionTemplate=174-350; GTPase Der; GTPase, EngA, HYDROLASE; HET: PO4, GNP; {Bacillus subtilis (strain 168)}
----NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDT--SFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEG--IIEQDKRIAGYAH
EA--GKAVVIVVNKWDAVDKDEST--MKEF------EENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE--
##### No 322 #####
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>sequence1; MatchedRegionQuery=56-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI----------DSPDSLENIPEKWTPEVKHFC
-PNVPIILVGNKKDLRNDEHTRREL----AKMKQEPVKPEEGRDM--------A-NRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4EKD_A:AUTOPDB; Probability=99.4; Identities=18%; Resolution=2.71A; MatchedRegionTemplate=223-374; Guanine nucleotide-binding protein G(q) subunit; GTP-binding, Regulator of G protein; HET: GDP, MES; {Mus musculus}
-------------------------------------------------------VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW
FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ-
##### No 323 #####
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>sequence1; MatchedRegionQuery=5-183
GAMGSPIRKKLVIVGDGACGKT-CLLIVNSKDQFP-E-VYVPTV-FENYVA--DIEVDG-----------------K----QVELALWD-----------TAGLEDYDRLRPLSYPDTDV
ILMCFSIDSPDSL--ENIPEKWTPEVKH--FCPNVPIILVGNK-KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3L82_B:AUTOPDB; Probability=99.4; Identities=8%; Resolution=2.4A; MatchedRegionTemplate=176-386; Telomeric repeat-binding factor 1, F-box; TRFH domain, helix, GTPase domain; {Homo sapiens}
----IQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDG
FIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPC-FYLAH----------ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES-
##### No 324 #####
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>sequence1; MatchedRegionQuery=3-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV--PTVFENYVADIEVDGKQVELALWDTAGLEDY-----DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV---KHFC
PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6S6A_A:AUTOPDB; Probability=99.4; Identities=14%; Resolution=2.63A; MatchedRegionTemplate=5-183; Ras-related GTP-binding protein A, Ras-related; small GTPases, mTORC1 activator, roadblock; HET: GTP, GDP, 9JE; {Homo sapiens}
--PNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-GNLVLNLWDCGGLDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDM-HYYQSCLEAILQNS
PDAKIFCLVHKMDLVQEDQRDLIFKE-R-----EEDLRRLSRPL-ECACFRTSIWD-ETLYKAWSSIVYQL---
##### No 325 #####
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>sequence1; MatchedRegionQuery=3-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV--PTVFENYVADIEVDGKQVELALWDTAGLEDY-----DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV---KHFC
PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6S6D_A:AUTOPDB; Probability=99.4; Identities=14%; Resolution=2.5A; MatchedRegionTemplate=5-183; Ras-related GTP-binding protein A, Ras-related; small GTPases, mTORC1 activator, roadblock; HET: GTP, GDP, 9JE; {Homo sapiens}
--PNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-GNLVLNLWDCGGLDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDM-HYYQSCLEAILQNS
PDAKIFCLVHKMDLVQEDQRDLIFKE-R-----EEDLRRLSRPL-ECACFRTSIWD-ETLYKAWSSIVYQL---
##### No 326 #####
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>sequence1; MatchedRegionQuery=3-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV--PTVFENYVADIEVDGKQVELALWDTAGLEDY-----DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV---KHFC
PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6S6D_B:AUTOPDB; Probability=99.4; Identities=14%; Resolution=2.5A; MatchedRegionTemplate=5-183; Ras-related GTP-binding protein A, Ras-related; small GTPases, mTORC1 activator, roadblock; HET: 9JE, GTP, GDP; {Homo sapiens}
--PNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-GNLVLNLWDCGGLDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDM-HYYQSCLEAILQNS
PDAKIFCLVHKMDLVQEDQRDLIFKE-R-----EEDLRRLSRPL-ECACFRTSIWD-ETLYKAWSSIVYQL---
##### No 327 #####
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>sequence1; MatchedRegionQuery=55-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKHFC
-PNVPIILVGNKKDLRNDEHTRREL------AKMKQ---EPVKPEEGRDMANR-I--------------GAFGYMECSAKTKDGVREVFEMATRAALQA
>2XTZ_C:AUTOPDB; Probability=99.4; Identities=15%; Resolution=2.34A; MatchedRegionTemplate=219-381; GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT; HYDROLASE, G-PROTEIN SIGNALING, SELF-ACTIVATION, RAS-LIKE; HET: SO4, CSS, GSP; {ARABIDOPSIS THALIANA}
------------------------------------------------------GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC
FEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLR--
##### No 328 #####
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>sequence1; MatchedRegionQuery=3-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGLEDYDR-----LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE---VKHFC
PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN--RIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4ARZ_A:AUTOPDB; Probability=99.4; Identities=16%; Resolution=3.1A; MatchedRegionTemplate=4-185; GTP-BINDING PROTEIN GTR1, GTP-BINDING PROTEIN; HYDROLASE, GTPASE, CELL GROWTH; HET: GTP, GDP; {SACCHAROMYCES CEREVISIAE}
--MSSNNRKKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF-LGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYS
PDAKIFVLLHKMDLVQLDKREELFQIMMK------NLSETSSEFGFPNLIGFPTSIWDE-SLYKAWSQIVCSL---
##### No 329 #####
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>sequence1; MatchedRegionQuery=6-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY----------DR-LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF
CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6XRS_C:AUTOPDB; Probability=99.4; Identities=13%; Resolution=2.8A; MatchedRegionTemplate=204-376; GTPase Der; GTPase, KH domain, National Institute; HET: GDP; {Neisseria gonorrhoeae (strain NCCP11945)}
-----AKHPVFAVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDI--ADQDATIAGFALE-
-AGRALVVAVNKWDGISEERRE-QVKR--------DISRKL-YFLDFAKFHFISALKERGIDGLFESIQAAY---
##### No 330 #####
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>sequence1; MatchedRegionQuery=6-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY----------DR-LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF
CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6XRS_D:AUTOPDB; Probability=99.4; Identities=13%; Resolution=2.8A; MatchedRegionTemplate=203-375; GTPase Der; GTPase, KH domain, National Institute; HET: GDP; {Neisseria gonorrhoeae (strain NCCP11945)}
-----AKHPVFAVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDI--ADQDATIAGFALE-
-AGRALVVAVNKWDGISEERRE-QVKR--------DISRKL-YFLDFAKFHFISALKERGIDGLFESIQAAY---
##### No 331 #####
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>sequence1; MatchedRegionQuery=4-127
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPD----TDVILMCFSID-SPDSLENIPEKWTPEVKHF----CP
NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1NRJ_B:AUTOPDB; Probability=99.4; Identities=16%; Resolution=1.7A; MatchedRegionTemplate=43-170; Signal recognition particle receptor alpha; Signal recognition particle, Transmembrane, Receptor; HET: GTP; {Saccharomyces cerevisiae}
---QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ---EPLSAADY--DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCEN
GIDILIACNKSELFTA---------------------------------------------------------
##### No 332 #####
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>sequence1; MatchedRegionQuery=55-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKHF-
CPNVPIILVGNKKDLRNDEHTRREL------AKMKQ---EPVKPEEGRDMANR---------------IGAFGYMECSAKTKDGVREVFEMATRAALQA
>2XTZ_A:AUTOPDB; Probability=99.4; Identities=14%; Resolution=2.34A; MatchedRegionTemplate=213-376; GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT; HYDROLASE, G-PROTEIN SIGNALING, SELF-ACTIVATION, RAS-LIKE; HET: SO4, GSP; {ARABIDOPSIS THALIANA}
------------------------------------------------------GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC
FEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRR-
##### No 333 #####
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>sequence1; MatchedRegionQuery=56-183
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKHFC
-PNVPIILVGNKKDLRNDEHTRRELAKMKQEP---VKPEEGRD-----MA---------------------NRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4FID_B:AUTOPDB; Probability=99.4; Identities=15%; Resolution=2.62A; MatchedRegionTemplate=183-350; G protein alpha subunit; RAS-LIKE DOMAIN, ALL-HELICAL DOMAIN, GTP; HET: MSE, GDP, MLY; {Entamoeba histolytica}
-------------------------------------------------------IPFHLIDVGGQRSERKKWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF
LKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK-
##### No 334 #####
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>sequence1; MatchedRegionQuery=9-93
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT-VFENYVADIEVDGKQV-------------------ELALWDTAGLEDYDR-------LRPLSYPDTDVILMCFSIDSPD
SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2DBY_A:AUTOPDB; Probability=99.4; Identities=15%; Resolution=1.76A; MatchedRegionTemplate=3-114; GTP-binding protein; GTP-binding protein, GDP, Structural Genomics; HET: GDP; {Thermus thermophilus}
--------LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDP
-------------------------------------------------------------------------------------------
##### No 335 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVP-TVFENYVADIEVDGKQVELALWDTAGLEDYDR------------LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV
KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1MKY_A:AUTOPDB; Probability=99.4; Identities=18%; Resolution=1.9A; MatchedRegionTemplate=178-355; Probable GTP-binding protein engA; GTPase, EngA, Der, KH-Domain, tandem; HET: GDP, PO4; {Thermotoga maritima}
----ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI--DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ--RMAGLM
ERR--GRASVVVFNKWDLVVHREKR--YDEF------TKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA--
##### No 336 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD-----------RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF
CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4DCU_A:AUTOPDB; Probability=99.4; Identities=15%; Resolution=2.0A; MatchedRegionTemplate=194-370; GTPase Der; GTPASE, ENGA, GDP, PROTEIN BINDING; HET: GDP; {Bacillus subtilis}
----NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEG--IIEQDKRIAGYAHE-
-AGKAVVIVVNKWDAVDKDEST--MKEF------EENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE--
##### No 337 #####
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>sequence1; MatchedRegionQuery=3-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR-------LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP
NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5KH0_B:AUTOPDB; Probability=99.4; Identities=18%; Resolution=2.8A; MatchedRegionTemplate=10-172; HydF; [FEFE]-HYDROGENASE MATURASE OXIDOREDUCTASE, OXIDOREDUCTASE; HET: SF4; {Thermosipho melanesiensis (strain DSM 12029 / CIP 104789 / BI429)}
--ASGGFRKYIAITGRRNVGKSSFMNALIGQEVSIVSNVAGTTTDPVFKSMELS-PVGPITLIDTPGLDDVGELGIKRIKKAKKSLYRADCGILIVDDIPGNFEEQ----IIKLFKEL--
EIPYFIAINKIDTIDHENIEK-----------------EYKKYN-VPILKVSALKKIGFEKIGKTINSIL---
##### No 338 #####
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>sequence1; MatchedRegionQuery=3-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR-------LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP
NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5KH0_D:AUTOPDB; Probability=99.4; Identities=18%; Resolution=2.8A; MatchedRegionTemplate=10-172; HydF; [FEFE]-HYDROGENASE MATURASE OXIDOREDUCTASE, OXIDOREDUCTASE; HET: SF4; {Thermosipho melanesiensis (strain DSM 12029 / CIP 104789 / BI429)}
--ASGGFRKYIAITGRRNVGKSSFMNALIGQEVSIVSNVAGTTTDPVFKSMELS-PVGPITLIDTPGLDDVGELGIKRIKKAKKSLYRADCGILIVDDIPGNFEEQ----IIKLFKEL--
EIPYFIAINKIDTIDHENIEK-----------------EYKKYN-VPILKVSALKKIGFEKIGKTINSIL---
##### No 339 #####
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>sequence1; MatchedRegionQuery=6-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--------RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP
NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3GEI_B:AUTOPDB; Probability=99.4; Identities=19%; Resolution=3.4A; MatchedRegionTemplate=234-399; tRNA modification GTPase mnmE (E.C.3.6.-.-); G protein, G domain, GTPase; HET: GCP; {Chlorobium tepidum}
-----SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYI-EECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDE-LTEIRELKAA-HP
AAKFLTVANKLDRAANADAL--I-------------RAIADG-TGTEVIGISALNGDGIDTLKQHMGDLV---
##### No 340 #####
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>sequence1; MatchedRegionQuery=9-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLE-----------DYD----RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTP-
--------EVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2CXX_A:AUTOPDB; Probability=99.4; Identities=15%; Resolution=1.7A; MatchedRegionTemplate=3-184; Probable GTP-binding protein engB; GTP-binding protein, Structural Genomics, NPPSFA; HET: GDP; {Pyrococcus horikoshii}
--------ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK-I--IE--IEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEII---KRWEKR
GEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQE--VINFLAEKF------EVPLSEI-DKVFIPISAKFGDNIERLKNRIFEVIR--
##### No 341 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-NYVADIEVDGKQVELALWDTAGLEDYD-------RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTP--------
----------------------------------------------------------EVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK
TKDGVREVFEMATRAALQA
>4A9A_A:AUTOPDB; Probability=99.4; Identities=15%; Resolution=2.67A; MatchedRegionTemplate=71-300; RIBOSOME-INTERACTING GTPASE 1, TRANSLATION MACHINERY-ASSOCIATED; TRANSLATION, DRG-DFRP COMPLEX, RIBOSOME BINDING; {SACCHAROMYCES CEREVISIAE}
-----TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRY--KGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNK
TPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLIDVLEASSRRYMPAIYVLNKIDSLSIEELEL--------------L------YRIPNAVPISSG
QDWNLDELLQVMWDRLN--
##### No 342 #####
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>sequence1; MatchedRegionQuery=6-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY-VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--------RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP
NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3GEE_A:AUTOPDB; Probability=99.4; Identities=18%; Resolution=2.95A; MatchedRegionTemplate=239-404; tRNA modification GTPase mnmE (E.C.3.6.-.-); G protein, GTPase, tRNA modification; HET: GDP, FON; {Chlorobium tepidum}
-----SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYI-EECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDE-LTEIRELKAA-HP
AAKFLTVANKLDRAANADAL--IR-------------AIADG-TGTEVIGISALNGDGIDTLKQHMGDLV---
##### No 343 #####
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>sequence1; MatchedRegionQuery=6-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY-VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--------RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP
NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3GEI_A:AUTOPDB; Probability=99.4; Identities=18%; Resolution=3.4A; MatchedRegionTemplate=234-399; tRNA modification GTPase mnmE (E.C.3.6.-.-); G protein, G domain, GTPase; HET: GCP; {Chlorobium tepidum}
-----SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYI-EECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDE-LTEIRELKAA-HP
AAKFLTVANKLDRAANADAL--IR-------------AIADG-TGTEVIGISALNGDGIDTLKQHMGDLV---
##### No 344 #####
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>sequence1; MatchedRegionQuery=8-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-PTVFENYVADIEVDGKQVELALWDTAGLE-------DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN
VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2DYK_B:AUTOPDB; Probability=99.4; Identities=22%; Resolution=1.96A; MatchedRegionTemplate=1-160; GTP-binding protein; GTPase, ribosome-binding protein, Structural Genomics; HET: GDP; {Thermus thermophilus}
-------MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRD-LKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRA--ELTQADYEVAEYLRR--KG
KPVILVATKVDDPKHELYLG-----------------PLYGLGFGDPIPTSSEHARGLEELLEAIWERL---
##### No 345 #####
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>sequence1; MatchedRegionQuery=7-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGLEDYDR-----LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTP---EVKHFC
PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN--RIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3R7W_C:AUTOPDB; Probability=99.4; Identities=14%; Resolution=2.773A; MatchedRegionTemplate=5-181; GTP-binding protein GTR1, GTP-binding protein; Rag GTPases, Gtr1p, Gtr2p, mTOR; HET: GNP; {Saccharomyces cerevisiae}
------LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF-LGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYS
PDAKIFVLLHKMDLVQLDKREELFQIMMK------NLSETSSEFGFPNLIGFPTSIWDE-SLYKAWSQIVCS----
##### No 346 #####
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>sequence1; MatchedRegionQuery=7-179
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRL----------RPLS--YPDTDVILMCFSIDSPDSLENIPEKWTPEVK
HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4Q5I_B:AUTOPDB; Probability=99.4; Identities=15%; Resolution=2.8A; MatchedRegionTemplate=3-166; Ferrous iron transport protein B; G PROTEIN, IRON TRANSPORT, GTPASE; {Escherichia coli}
------KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQF--STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER---NLYLTLQLL-
--ELGIPCIVALNMLDIAEKQNIRIE-------------IDALSARLG-CPVIPLVSARGRGIEALKLAIDR-----
##### No 347 #####
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>sequence1; MatchedRegionQuery=5-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEV--DGKQVELALWDTAGLEDYDRLRPLSYPD----TDVILMCFSIDSPDSLENIPEKWTPEVKHFC---
-----------------------------------PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6RLB_E:AUTOPDB; Probability=99.4; Identities=18%; Resolution=4.5A; MatchedRegionTemplate=31-241; PROTEIN; dynein, cilia, intraflagellar transport, complex; {Homo sapiens}
----EIAEKFVFFIGSKNGGKTTIILRCLDRDEP--PKPTLALEYTYGRRAKGHNTPKDIAHFWELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKPNDLWPTMENLLQATKSHVDKV
IMKLGKTNAKAVSEMRQKIWNNMPKDHPDHELIDPFPVPLVIIGSKYDVFQDFES-EKR------KVICKTLRFVAHYYG-ASLMFTSK-SEALLLKIRGVINQLA---
##### No 348 #####
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>sequence1; MatchedRegionQuery=5-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEV--DGKQVELALWDTAGLEDYDRLRPLSYPD----TDVILMCFSIDSPDSLENIPEKWTPEVKHFC---
-----------------------------------PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6SC2_F:AUTOPDB; Probability=99.4; Identities=18%; Resolution=3.9A; MatchedRegionTemplate=31-241; DYNC2H1 variant protein; dynein, cilia, intraflagellar transport, complex; HET: ADP, ATP; {Homo sapiens}
----EIAEKFVFFIGSKNGGKTTIILRCLDRDEP--PKPTLALEYTYGRRAKGHNTPKDIAHFWELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKPNDLWPTMENLLQATKSHVDKV
IMKLGKTNAKAVSEMRQKIWNNMPKDHPDHELIDPFPVPLVIIGSKYDVFQDFES-EKR------KVICKTLRFVAHYYG-ASLMFTSK-SEALLLKIRGVINQLA---
##### No 349 #####
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>sequence1; MatchedRegionQuery=7-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-NYVADIEVDGKQVELALWDTAGLEDYDRL----------RPLS--YPDTDVILMCFSIDSPDSLENIPEKWTPEVK
HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3I8S_B:AUTOPDB; Probability=99.4; Identities=14%; Resolution=1.8A; MatchedRegionTemplate=2-166; Ferrous iron transport protein B; GTPase, GPCR, iron uptake, Feo; {Escherichia coli}
------KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFS--TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER---NLY-LTLQLL
--ELGIPCIVALNMLDIAEKQNIRIE-------------IDALSARLG-CPVIPLVSTRGRGIEALKLAIDRY----
##### No 350 #####
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>sequence1; MatchedRegionQuery=4-126
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVD----------------GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT
PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4NCF_A:AUTOPDB; Probability=99.4; Identities=18%; Resolution=3.015A; MatchedRegionTemplate=407-542; Eukaryotic translation initiation factor 5B; Translation initiation, GTPase, eIF5B/IF2, Subunit; HET: GDP; {Saccharomyces cerevisiae}
---KDLRSPICCILGHVDTGKTKLLDKIRQTNVQGGEAGGITQQIGATYFPIDAIKAKTKVMAEYEKQTFDVPGLLVIDTPGHESFSNLRSRGSSLCNIAILVIDIMHGLEQQ-TIES-I
KLLRD--RKAPFVVALNKIDRLY----------------------------------------------------------
##### No 351 #####
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>sequence1; MatchedRegionQuery=5-126
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIE----------------VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT
PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4TMX_A:AUTOPDB; Probability=99.4; Identities=19%; Resolution=1.5A; MatchedRegionTemplate=521-655; eIF5B; Translation factor, GTPase, monovalent cation; HET: GTP, EDO; {Chaetomium thermophilum}
----NLRSPICCILGHVNTGKTKLLDKIRQTNVQEGEAGGITQQIGATYFPVEAIKQKTAVVNKDGKFEFKVPGLLIIDTPGHESFSNLRSRGSSLCNIAILVVDIMHGLEPQT-IESL-
RLLRE--RKTPFVVALNKIDRLY----------------------------------------------------------
##### No 352 #####
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>sequence1; MatchedRegionQuery=56-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDS----------PDSLENIPEKWTPEVKHF-
CPNVPIILVGNKKDLRNDEHTR--RELAKMKQEPV----------------KPEEGRDM-----ANR-------IGAFGYMECSAKTKDGVREVFEMATRAALQA
>6AU6_A:AUTOPDB; Probability=99.4; Identities=17%; Resolution=1.7A; MatchedRegionTemplate=237-404; Guanine nucleotide-binding protein G(s) subunit; G protein, GDP, active conformation; HET: GDP, GOL; {Homo sapiens}
-------------------------------------------------------VNFHMFDVGGQRDERRKWIQSFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW
LRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQ--
##### No 353 #####
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>sequence1; MatchedRegionQuery=6-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4B43_A:AUTOPDB; Probability=99.4; Identities=22%; Resolution=1.937A; MatchedRegionTemplate=71-233; TRANSLATION INITIATION FACTOR IF-2; TRANSLATION, INITIATION, GTP HYDROLYSIS MECHANISM; HET: GOL; {THERMUS THERMOPHILUS}
-----RRPPVVVIMGHVDHGLTTLLDYLRKSRIAEKEAGGITQH-VGAFEVKTPQGTVVFIDTPGAEAFTTIRQRGAKVADIAVIVIAADDGI-MPQT-EEAIAHAKA--AGAKLIFAIN
KIDLPQADPEK-VKRQLMERG------FVPEEYGGDAIVIPISAKTGQGVQDLLEMILLL----
##### No 354 #####
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>sequence1; MatchedRegionQuery=5-126
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE----NYVA-------------DIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT
PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5YT0_A:AUTOPDB; Probability=99.3; Identities=21%; Resolution=1.89A; MatchedRegionTemplate=26-160; Probable translation initiation factor IF-2; translation initiation factor, ribosomal stalk; HET: GDP; {Aeropyrum pernix K1}
----RLRQPIVVVLGHVDHGKTTLLDKIRRTAVAAKEAGGITQHIGASIVPADVIEKIAEPLKKVIPVKLVIPGLLFIDTPGHELFSNLRRRGGSVADFAILVVDIMEGF--KPQTYEAL
ELLKE--RRVPFLIAANKIDRIP----------------------------------------------------------
##### No 355 #####
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>sequence1; MatchedRegionQuery=5-126
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY---VADI--------------EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT
PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4N3N_A:AUTOPDB; Probability=99.3; Identities=19%; Resolution=2.752A; MatchedRegionTemplate=520-654; Eukaryotic translation initiation factor 5B-like; Translation initiation, GTPase, eIF5B/IF2, Subunit; {Chaetomium thermophilum var. thermophilum}
----NLRSPICCILGHVDTGKTKLLDKIRQTNVQEGEAGGITQQIGATYFPVEAIKQKTAVVNKDGKFEFKVPGLLIIDTPGHESFSNLRSRGSSLCNIAILVVDIMHGLEPQ-TIES-L
RLLRE--RKTPFVVALNKIDRLY----------------------------------------------------------
##### No 356 #####
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>sequence1; MatchedRegionQuery=7-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVP-TVFENYVADIEVDGKQVELALWDTAGLEDYDR--------LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC
PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3GEH_A:AUTOPDB; Probability=99.3; Identities=21%; Resolution=3.2A; MatchedRegionTemplate=220-379; tRNA modification GTPase mnmE (E.C.3.6.-.-); G protein, GTPase, tRNA modification; HET: FON, GDP; {Nostoc sp. PCC}
------TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVV--GGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD--QEIYEQV----
KHRPLILVMNKIDLVEKQLITS------------L---EY--PENITQIVHTAAAQKQGIDSLETAILEIV---
##### No 357 #####
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>sequence1; MatchedRegionQuery=6-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4B3X_A:AUTOPDB; Probability=99.3; Identities=23%; Resolution=1.95A; MatchedRegionTemplate=71-233; TRANSLATION INITIATION FACTOR IF-2; TRANSLATION, INITIATION, GTP HYDROLYSIS MECHANISM; HET: GOL; {THERMUS THERMOPHILUS}
-----RRPPVVVIMGHVDHGKTTLLDYLRKSRIAEKEGGGITQ-HVGAFEVKTPQGTVVFIDTPGHEAFTTIRQRGAKVADIAVIVIAADDGI--MPQTEEAIAHAKA--AGAKLIFAIN
KIDLPQADPE-KVKRQLME------RGFVPEEYGGDAIVIPISAKTGQGVQDLLEMILLL----
##### No 358 #####
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>sequence1; MatchedRegionQuery=4-126
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY---VADI--------------EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT
PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4N3G_A:AUTOPDB; Probability=99.3; Identities=18%; Resolution=3.203A; MatchedRegionTemplate=875-1010; Eukaryotic translation initiation factor 5B-like; Translation initiation, GTPase, eIF5B/IF2, Subunit; HET: LAC; {Chaetomium thermophilum var. thermophilum}
---DNLRSPICCILGHVDTGKTKLLDKIRQTNVQEGEAGGITQQIGATYFPVEAIKQKTAVVNKDGKFEFKVPGLLIIDTPGHESFSNLRSRGSSLCNIAILVVDIMHGLEPQ-TIESL-
RLLRE--RKTPFVVALNKIDRLY----------------------------------------------------------
##### No 359 #####
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>sequence1; MatchedRegionQuery=56-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDS----------PDSLENIPEKWTPEVKHFC
-PNVPIILVGNKKDLRNDEHT--RRELAKMKQEPVK----------------PEEGRDM-----AN-------RIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6EG8_I:AUTOPDB; Probability=99.3; Identities=16%; Resolution=2.8A; MatchedRegionTemplate=212-379; Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit; G protein Heterotrimer GDP GPCR; HET: GDP; {Homo sapiens}
-------------------------------------------------------VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW
LRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQ--
##### No 360 #####
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>sequence1; MatchedRegionQuery=5-126
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT----------V----------F-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP
EKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3TR5_A:AUTOPDB; Probability=99.3; Identities=19%; Resolution=2.11A; MatchedRegionTemplate=12-150; Peptide chain release factor 3; Protein synthesis, TRANSLATION; HET: MSE, GDP; {Coxiella burnetii}
----TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKG--VEPRT
IKLMEVCRL--RHTPIMTFINKMDRDT----------------------------------------------------------
##### No 361 #####
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>sequence1; MatchedRegionQuery=3-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP--TV-FEN--------YVA-----D---IEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK
WTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3PEN_A:AUTOPDB; Probability=99.3; Identities=16%; Resolution=2.3005A; MatchedRegionTemplate=4-190; Translation initiation factor 2 subunit; RNA, Met, Archaeal Proteins, Binding; HET: 5GP, GDP; {Sulfolobus solfataricus}
--PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREH
FV-ALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQ------FTKG--TWAENVPIIPVSALHKINIDSLIEGIEEY----
##### No 362 #####
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>sequence1; MatchedRegionQuery=5-126
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEV----------------DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT
PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4N3S_A:AUTOPDB; Probability=99.3; Identities=17%; Resolution=1.832A; MatchedRegionTemplate=407-541; Domains1-3; Translation initiation, GTPase, eIF5B/IF2, Subunit; HET: EDO, GOL; {Saccharomyces cerevisiae}
----DLRSPICCILGHVDTGKTKLLDKIRQTNVQGGEAGGITQQIGATYFPIDAIKAKTKVMAEYEKQTFDVPGLLVIDTPGHESFSNLRSRGSSLCNIAILVIDIMHGLEQQ-TIE-SI
KLLRD--RKAPFVVALNKIDRLY----------------------------------------------------------
##### No 363 #####
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>sequence1; MatchedRegionQuery=7-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVP-TVFENYVADIEVDGKQVELALWDTAGLEDYD---------RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF
CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1XZP_A:AUTOPDB; Probability=99.3; Identities=21%; Resolution=2.3A; MatchedRegionTemplate=236-397; Probable tRNA modification GTPase trmE; GTP-binding, THF-binding, tRNA-modification, HYDROLASE; HET: SO4; {Thermotoga maritima}
------RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIV--IRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEE-D-RKILERI---
-KNKRYLVVINKVDVVEKINEEE-IK---------N---KL-G--TDRHMVKISALKGEGLEKLEESIYRET---
##### No 364 #####
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>sequence1; MatchedRegionQuery=8-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGLEDYD---------RLRPLSYPDTDVILMCFSIDSPDSLE--NIPEKWTPEVKH
FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2E87_A:AUTOPDB; Probability=99.3; Identities=20%; Resolution=2.35A; MatchedRegionTemplate=168-335; Hypothetical protein PH1320; GTP-binding, GTPase, Obg, bundle, GDP; HET: SO4, GDP; {Pyrococcus horikoshii}
-------IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVG--QFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLF-EEVHG
EFKDLPFLVVINKIDVADEENIK-R-------------LEKFVKEKG-LNPIKISALKGTGIDLVKEEIIKTL---
##### No 365 #####
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>sequence1; MatchedRegionQuery=6-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5LMV_a:AUTOPDB; Probability=99.3; Identities=23%; Resolution=4.9A; MatchedRegionTemplate=126-288; 30S ribosomal protein S2, 30S; ribosome, translation, initiation factors, 30S; HET: G7M, 4SU, OMC, 5MU, PSU; {Thermus thermophilus HB8}
-----RRPPVVVIMGHVDHGKTTLLDYLRKSRIAEKEAGGITQH-VGAFEVKTPQGTVVFIDTPGHEAFTTIRQRGAKVADIAVIVIAADDGI-MPQTE-EAIAHAKA--AGAKLIFAIN
KIDLPQADPE-KVKRQLME------RGFVPEEYGGDAIVIPISAKTGQGVQDLLEMILLL----
##### No 366 #####
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>sequence1; MatchedRegionQuery=6-126
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY---V--------------ADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT
PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1G7S_A:AUTOPDB; Probability=99.3; Identities=16%; Resolution=2.0A; MatchedRegionTemplate=3-136; TRANSLATION INITIATION FACTOR IF2/EIF5B; translational GTPase, TRANSLATION; HET: GDP; {Methanothermobacter thermautotrophicus}
-----IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEG--FKPQTQEAL
NILRM--YRTPFVVAANKIDRIH----------------------------------------------------------
##### No 367 #####
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>sequence1; MatchedRegionQuery=7-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-TVFENYVADIEVDGKQVELALWDTAGLEDYDR--L------RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-C
PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5ADY_6:AUTOPDB; Probability=99.3; Identities=21%; Resolution=4.5A; MatchedRegionTemplate=196-361; 50S RIBOSOMAL PROTEIN L32, 50S; RIBOSOME, RIBOSOME RESCUE; HET: GNP; {ESCHERICHIA COLI K-12}
------DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVA-DVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRVQENI-EAVNTVLEEIDA
HEIPTLLVMNKIDMLEDFEPRI------------D----RDE-ENKPNRVWLSAQTGAGIPQLFQALTERL---
##### No 368 #####
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>sequence1; MatchedRegionQuery=6-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-PTVFENYVADIEVDGKQVELALWDTAGLEDY--DRLRP------LSYPDTDVILMCFSIDSPDSL-ENIPEKWTPEVKHF-
CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR--IGAFGYMECSAKTKDGVREVFEMATRAALQA
>2QTH_A:AUTOPDB; Probability=99.3; Identities=16%; Resolution=2.0A; MatchedRegionTemplate=177-352; GTP-binding protein; beta-alpha-barrels, GTP-binding, Nucleotide-binding, NUCLEOTIDE BINDING; HET: GDP, ACT; {Sulfolobus solfataricus P2}
-----NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI--NNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIG
VSGKPILVTLNKIDKINGDLYK-KLDL----------VEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLA---
##### No 369 #####
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>sequence1; MatchedRegionQuery=78-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5XKT_B:AUTOPDB; Probability=99.3; Identities=15%; Resolution=1.8A; MatchedRegionTemplate=118-203; Urease accessory protein UreG; SIMIBI Class GTPase, HYDROLASE; HET: GNP; {Klebsiella pneumoniae subsp. rhinoscleromatis SB3432}
-----------------------------------------------------------------------------ELADLTIYVIDVAEGEKIPR------KGGPG--ITRSDFLVIN
KTDLAPYVGA--SLKVMA------SD---TQRMRGDRPWTFTNLKQGDGLSTIIAFLEDKGM--
##### No 370 #####
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>sequence1; MatchedRegionQuery=6-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLEDY------DRLRP----LSYP---DTDVILMCFSIDSPDSLENIPEKWTPEV
KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5UCV_A:AUTOPDB; Probability=99.3; Identities=11%; Resolution=1.8A; MatchedRegionTemplate=30-206; Probable GTP-binding protein EngB; SSGCID, GDP, YsxC, engB, ribosome; HET: GOL, GDP; {Neisseria gonorrhoeae (strain NCCP11945)}
-----DTPLEIAFVGRSNAGKSSAINTLTNHVRLAYVSKTPGRTQHINFFELQ---NGNFMVDLPGYGYAQVPEAVRAHWVNLLGDYLRHRKQLIGLVLIMDARHPL--KELDIRMLDFF
HT--TGRPVHILLSKADKLSKNEQIKTLSQVK------KLLKPYS-DRQNISVQLFSSLKKQGIDEANRTVGSWFD--
##### No 371 #####
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>sequence1; MatchedRegionQuery=5-178
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPE---------VYVPTVFENYVA-DIEVD---GKQVELALWDTA-GLEDYDRLRPLSYPD----TDVILMCFSIDSPDSLENIPEKW
TPEVKHFC------------------------------------------------------PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD
GVREVFEMATRAALQA
>4W7G_A:AUTOPDB; Probability=99.3; Identities=8%; Resolution=2.1A; MatchedRegionTemplate=92-335; Dynein Light Intermediate Chain; molecular motor, G protein, intracellular; {Chaetomium thermophilum}
----RLPEKNIILLGGTVDSQREFFEALSSNDRRTLDRSSSRSPPVANSFALGYTYYDVLDADHEDTLARISIYTLTDPSPAFASLLQPILTPDSIPNTLIVILLDWSQPWKWMRQLREW
ILLLRTVLVSLSHECKATMEEVMLSWRDRGRGGGINLDGSMTAPTADAEPALPLGPGEWEDGLGLPLCVVCQNAEKMEYLEKTQGWKEE-EFDVVLQFMRTVLLKHG-ASLIYTTPSVPS
QLPSLIHSSL------
##### No 372 #####
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>sequence1; MatchedRegionQuery=6-179
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4KJZ_B:AUTOPDB; Probability=99.3; Identities=23%; Resolution=2.8A; MatchedRegionTemplate=72-233; Translation initiation factor IF-2; Translation Initiation Factor/IF2 Superfamily, GTPase; HET: GDP; {Thermus thermophilus}
-----RRPPVVVIMGHVDHGKTTLLDYLRKSRIAEKEAGGITQH-VGAFEVKTPQGTVVFIDTPGHEAFTTIRQRGAKVADIAVIVIAADDGIM-PQT-EEAIAHAKA--AGAKLIFAIN
KIDLPQADPE-KVKRQLME------RGFVPEEYGGDAIVIPISAKTGQGVQDLLEMILL-----
##### No 373 #####
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>sequence1; MatchedRegionQuery=6-179
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4KJZ_C:AUTOPDB; Probability=99.3; Identities=23%; Resolution=2.8A; MatchedRegionTemplate=72-233; Translation initiation factor IF-2; Translation Initiation Factor/IF2 Superfamily, GTPase; HET: GDP; {Thermus thermophilus}
-----RRPPVVVIMGHVDHGKTTLLDYLRKSRIAEKEAGGITQH-VGAFEVKTPQGTVVFIDTPGHEAFTTIRQRGAKVADIAVIVIAADDGIM-PQTE-EAIAHAKA--AGAKLIFAIN
KIDLPQADPE-KVKRQLME------RGFVPEEYGGDAIVIPISAKTGQGVQDLLEMILL-----
##### No 374 #####
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>sequence1; MatchedRegionQuery=5-126
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIE----------------VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT
PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3WBI_A:AUTOPDB; Probability=99.3; Identities=17%; Resolution=2.35A; MatchedRegionTemplate=6-140; Eukaryotic translation initiation factor 5B; flexible, eukaryotic translation initiation, eIF1A; {Saccharomyces cerevisiae}
----DLRSPICCILGHVDTGKTKLLDKIRQTNVQGGEAGGITQQIGATYFPIDAIKAKTKVMAEYEKQTFDVPGLLVIDTPGHESFSNLRSRGSSLCNIAILVIDIMHGLEQQ-TIES-I
KLLRD--RKAPFVVALNKIDRLY----------------------------------------------------------
##### No 375 #####
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>sequence1; MatchedRegionQuery=6-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-PTVFENYVADIEVDGKQVELALWDTAGLEDYD--RLRPL------SYPDTDVILMCFSIDSPDSL-ENIPEKWTPEVKHF-
CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI--GAFGYMECSAKTKDGVREVFEMATRAALQA
>2QTF_A:AUTOPDB; Probability=99.3; Identities=16%; Resolution=2.0A; MatchedRegionTemplate=177-352; GTP-binding protein; beta-alpha-barrels, GTP-binding, Nucleotide-binding, NUCLEOTIDE BINDING; HET: ACT; {Sulfolobus solfataricus P2}
-----NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI--NNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIG
VSGKPILVTLNKIDKINGDLYK-KLDL----------VEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLA---
##### No 376 #####
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>sequence1; MatchedRegionQuery=6-127
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYD--------RL---RPLSYPDTDVILMCFSIDSPDSLE-NIPEKWTPEVK
HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3P1J_D:AUTOPDB; Probability=99.2; Identities=16%; Resolution=2.58A; MatchedRegionTemplate=23-157; GTPase IMAP family member 2; immunity, structural genomics consortium, gtpase; HET: UNX; {Homo sapiens}
-----RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFG
EDAMGHTIVLFTHKEDLNGG---------------------------------------------------------
##### No 377 #####
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>sequence1; MatchedRegionQuery=6-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-PTVFENYVADIEVDGKQVELALWDTAGLEDYD--RLRPL------SYPDTDVILMCFSIDSPDSL-ENIPEKWTPEVKHF-
CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR--IGAFGYMECSAKTKDGVREVFEMATRAALQA
>3KXI_A:AUTOPDB; Probability=99.2; Identities=16%; Resolution=2.65A; MatchedRegionTemplate=177-352; GTP-binding protein (HflX); SsGBP, HflX, GTPase, Mg++ ion; HET: GDP; {Sulfolobus solfataricus}
-----NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI--NNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIG
VSGKPILVTLNKIDKINGDLYK-KLDL----------VEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLA---
##### No 378 #####
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>sequence1; MatchedRegionQuery=3-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVF--ENYVA-DI------------------------EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID
SPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4RD4_A:AUTOPDB; Probability=99.2; Identities=15%; Resolution=1.3A; MatchedRegionTemplate=5-202; Translation initiation factor 2 subunit; Rossmann fold, TRANSLATION; HET: GNP; {Sulfolobus solfataricus}
--PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAAN
EPFPQPQTREHFVA-LGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQ------FTKGT--WAENVPIIPVSALHKINIDSLIEGIEEY----
##### No 379 #####
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>sequence1; MatchedRegionQuery=3-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVF--ENYVA-DI------------------------EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID
SPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4RJL_A:AUTOPDB; Probability=99.2; Identities=15%; Resolution=1.6401A; MatchedRegionTemplate=5-202; Translation initiation factor 2 subunit; gamma subunit, g-protein, translation, translation; HET: FMT, 7PG, GCP; {Sulfolobus solfataricus}
--PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAAN
EPFPQPQTREHFVA-LGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQ------FTKGT--WAENVPIIPVSALHKINIDSLIEGIEEY----
##### No 380 #####
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>sequence1; MatchedRegionQuery=7-182
GAMGSPIRKKLVIVGD--GACGKTCLLIVNSKDQFPEVYVPTVFENYV------ADIEVDGK-QVELALWDTA---------------------------------GLEDYDRLRPLSYP
DTDVILMCFSIDSPDSL--ENIPEKWTPEVKH--FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3L2O_B:AUTOPDB; Probability=99.2; Identities=8%; Resolution=2.8A; MatchedRegionTemplate=154-361; S-phase kinase-associated protein 1/F-box only; small G protein fold, Ubl; {Homo sapiens}
------NEPRFAMFGPGLEELNT-SLVLSLMSSEE---LCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCE
VVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE----------LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE--
##### No 381 #####
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>sequence1; MatchedRegionQuery=3-172
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY------------------------V-------PTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI
DSPDS------LENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI----GAFGYMECSAKTKDGVREVFEMATRAALQA
>5O8W_A:AUTOPDB; Probability=99.2; Identities=12%; Resolution=1.67A; MatchedRegionTemplate=3-202; Elongation factor 1-alpha, Elongation factor; PROTEIN-PROTEIN COMPLEX, TRANSLATION, COVALENT MODIFICATION; HET: GLN, MSE, PGE, MLZ, M3L; {Saccharomyces cerevisiae}
--GKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITID-IALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAG
GVGEFEAGISKDGQTRE-HALLAFT--LGVRQLIVAVNKMDSVKWDES--RFQEIV------KETSNFIKKVGYNPKTVPFVPISGWNGDNMIE------------
##### No 382 #####
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>sequence1; MatchedRegionQuery=5-175
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT-----------------------------VFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID
SPD---SLE---NIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI-----GAFGYMECSAKTKDGVREVFEMATRAALQA
>3J5Y_B:AUTOPDB; Probability=99.2; Identities=15%; Resolution=9.7A; MatchedRegionTemplate=209-412; Eukaryotic peptide chain release factor; Translation termination, eRF1, eRF3, tRNAleu; {Oryctolagus cuniculus}
----KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISAR
KGEFETGFEKGGQTREH-AMLAK--TAGVKHLIVLINKMDDPTVNWSIERYEECK------EKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKEQSD---------
##### No 383 #####
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>sequence1; MatchedRegionQuery=6-127
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYD--------RL---RPLSYPDTDVILMCFSIDSPDSLE-NIPEKWTPEVK
HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3P1J_C:AUTOPDB; Probability=99.2; Identities=16%; Resolution=2.58A; MatchedRegionTemplate=23-157; GTPase IMAP family member 2; immunity, structural genomics consortium, gtpase; HET: UNX; {Homo sapiens}
-----RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFG
EDAMGHTIVLFTHKEDLNGG---------------------------------------------------------
##### No 384 #####
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>sequence1; MatchedRegionQuery=3-126
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV--------------Y----------V-------PTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI
DSPDS------LENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1F60_A:AUTOPDB; Probability=99.2; Identities=13%; Resolution=1.67A; MatchedRegionTemplate=3-160; ELONGATION FACTOR EEF1A/ELONGATION FACTOR EEF1BA; protein-protein complex, TRANSLATION; {Saccharomyces cerevisiae}
--GKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITID-IALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAG
GVGEFEAGISKDGQTRE-HALLAFT--LGVRQLIVAVNKMDSVK----------------------------------------------------------
##### No 385 #####
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>sequence1; MatchedRegionQuery=9-92
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFP-EVYVPTVFENYVA--------------------DIEVDG--KQVELALWDTAG-------LEDYDRLRPLSYPDTDVILMCFSID
SPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1WXQ_A:AUTOPDB; Probability=99.2; Identities=14%; Resolution=2.6A; MatchedRegionTemplate=2-115; GTP-binding protein; GTP-binding protein, Structural Genomics, RIKEN; {Pyrococcus horikoshii}
--------MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDAT
GK--------------------------------------------------------------------------------------------
##### No 386 #####
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>sequence1; MatchedRegionQuery=3-171
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY------------------------VPTV-----FENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID
SPDS------LENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI----GAFGYMECSAKTKDGVREVFEMATRAALQA
>6RA9_B:AUTOPDB; Probability=99.2; Identities=11%; Resolution=2.7A; MatchedRegionTemplate=5-205; Elongation Factor 1A2; Moonlighting protein, RNA binding protein; HET: GOL, SO4, GDP, POK, GPE, SEP; {Oryctolagus cuniculus}
--GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAG
VGEFEAGISKNGQTRE-HALLAYT--LGVKQLIVGVNKMDSTEPAYSEKRYDEIVK------EVSAYIKKIGYNPATVPFVPISGWHGDNML-------------
##### No 387 #####
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>sequence1; MatchedRegionQuery=6-179
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-PTVFENYV---A--------------------------------------DIEVD-GKQVELALWDTAGLEDYDR---LRP
LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD--------GVREVFEMATRAALQA
>5OWV_D:AUTOPDB; Probability=99.2; Identities=18%; Resolution=3.72A; MatchedRegionTemplate=59-272; ATP-binding protein; dynamin, lipid remodelling, membrane tethering; {Campylobacter jejuni}
-----DKNVNIAIIGQFSSGKSSLLNLILGRDCLPTGVVPVTFKPTFLRYAKEYFLRVEFEDGSDIITNIEKLAFYTDQRNEVKQAKSLHIFAPIPLLEKITLVDTPGLNANENDTLTTL
DELKNIHGAIWLSLIDNAGKKSEE-DAIKANLEL--LGENSICVLNQKDKLSAEELDNVLNYA----------KSVFLK-YFNELIAISCKEAKDEQSYEKSNFQSLLDFLTQ-----
##### No 388 #####
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>sequence1; MatchedRegionQuery=6-179
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-PTVFENYV---A--------------------------------------DIEVD-GKQVELALWDTAGLEDYDR---LRP
LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD--------GVREVFEMATRAALQA
>5OXF_C:AUTOPDB; Probability=99.2; Identities=18%; Resolution=3.94A; MatchedRegionTemplate=59-272; ATP-binding protein; dynamin, membrane remodelling, membrane fusion; HET: GDP; {Campylobacter jejuni}
-----DKNVNIAIIGQFSSGKSSLLNLILGRDCLPTGVVPVTFKPTFLRYAKEYFLRVEFEDGSDIITNIEKLAFYTDQRNEVKQAKSLHIFAPIPLLEKITLVDTPGLNANENDTLTTL
DELKNIHGAIWLSLIDNAGKKSEE-DAIKANLEL--LGENSICVLNQKDKLSAEELDNVLNYA----------KSVFLK-YFNELIAISCKEAKDEQSYEKSNFQSLLDFLTQ-----
##### No 389 #####
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>sequence1; MatchedRegionQuery=8-127
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYD--------RLRPLSY---PDTDVILMCFSIDSPDSLE-NIPEKWTPEVK
HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2XTO_A:AUTOPDB; Probability=99.2; Identities=15%; Resolution=2.8A; MatchedRegionTemplate=22-154; GTPASE IMAP FAMILY MEMBER 2; IMMUNE SYSTEM, G PROTEIN; HET: GDP; {HOMO SAPIENS}
-------ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFG
EDAMGHTIVLFTHKEDLNGG---------------------------------------------------------
##### No 390 #####
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>sequence1; MatchedRegionQuery=5-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT--------VFENY-----VADIEV------------------DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI
DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2WSM_A:AUTOPDB; Probability=99.2; Identities=17%; Resolution=2.3A; MatchedRegionTemplate=37-223; HYDROGENASE EXPRESSION/FORMATION PROTEIN (HYPB); METAL BINDING PROTEIN; {ARCHAEOGLOBUS FULGIDUS}
----ESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDCDLLLIENVGNLICPV---DFDLGENYRVVMVSV
TEGDDVVEK---HPEIF-----RVADLIVINKVALAEAVGA--DVEKMK------AD---AKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN--
##### No 391 #####
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>sequence1; MatchedRegionQuery=4-127
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV--PTV---FE-----------NY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT
PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6BK7_B:AUTOPDB; Probability=99.2; Identities=17%; Resolution=1.83A; MatchedRegionTemplate=9-145; Adenosylhomocysteinase (E.C.3.3.1.1, 1.8.1.7); Structural Genomics, Center for Structural; {Enterococcus faecalis (strain ATCC 700802 / V583)}
---SLEKTRNIGIMAHVDAGKTTTTERILYYTGKIHKIGETHEGASQMDWMEQEQERGITITSAATTAQWKGYRVNIIDTPGHVDFTIEVQRSLRVLDGAVTVLDSQSGVEPQT-ETVWR
QAT---EYKVPRIVFCNKMDKIGA---------------------------------------------------------
##### No 392 #####
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>sequence1; MatchedRegionQuery=5-126
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN---YVAD--------------IEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT
PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5FG3_A:AUTOPDB; Probability=99.2; Identities=21%; Resolution=1.9A; MatchedRegionTemplate=25-159; Probable translation initiation factor IF-2; Translation initiaton factor, GTPase, Ribosomal; HET: GDP; {Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)}
----RLRQPIVVVLGHVDHGKTTLLDKIRRTAVAAKEAGGITQHIGASIVPADVIEKIAEPLKKVIPVKLVIPGLLFIDTPGHELFSNLRRRGGSVADFAILVVDIMEGFKP-QTYEA-L
ELLKE--RRVPFLIAANKIDRIP----------------------------------------------------------
##### No 393 #####
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>sequence1; MatchedRegionQuery=4-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENY-VADIE---------------------VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSL
ENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1KJZ_A:AUTOPDB; Probability=99.2; Identities=14%; Resolution=1.85A; MatchedRegionTemplate=11-202; eIF2gamma; initiation of translation, TRANSLATION; {Pyrococcus abyssi}
---SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPR
PQTREHL-MALQII-GQKNIIIAQNKIELVDKEKALENYRQIKE------FIEGT--VAENAPIIPISALHGANIDVLVKAIEDF----
##### No 394 #####
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>sequence1; MatchedRegionQuery=4-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENY-VADIE---------------------VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSL
ENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1KK1_A:AUTOPDB; Probability=99.2; Identities=14%; Resolution=1.8A; MatchedRegionTemplate=11-202; eIF2gamma, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER; initiation of translation, TRANSLATION; HET: GNP; {Pyrococcus abyssi}
---SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPR
PQTREHL-MALQII-GQKNIIIAQNKIELVDKEKALENYRQIKE------FIEGT--VAENAPIIPISALHGANIDVLVKAIEDF----
##### No 395 #####
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>sequence1; MatchedRegionQuery=4-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQ-------FPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV
PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4AC9_A:AUTOPDB; Probability=99.2; Identities=21%; Resolution=3.03A; MatchedRegionTemplate=14-185; MJ0495-LIKE PROTEIN; SELENOCYSTEINE, TRANSLATION, SECIS ELEMENT, EF-SEC; HET: 5GP, GDP, SO4, CMH, DXC; {METHANOCOCCUS MARIPALUDIS}
---MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITID-IGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTG-EH-MLILDH--FNI
PIIVVITKSDNAGTEEIK-RTEMIMK-----SILQSTH-NLKNSSIIPISAKTGFGVDELKNLIITT----
##### No 396 #####
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>sequence1; MatchedRegionQuery=4-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQ-------FPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV
PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4AC9_C:AUTOPDB; Probability=99.2; Identities=21%; Resolution=3.03A; MatchedRegionTemplate=12-183; MJ0495-LIKE PROTEIN; SELENOCYSTEINE, TRANSLATION, SECIS ELEMENT, EF-SEC; HET: 5GP, GDP, SO4, CMH, DXC; {METHANOCOCCUS MARIPALUDIS}
---MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITID-IGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTG-EH-MLILDH--FNI
PIIVVITKSDNAGTEEIK-RTEMIMK-----SILQSTH-NLKNSSIIPISAKTGFGVDELKNLIITT----
##### No 397 #####
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>sequence1; MatchedRegionQuery=4-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQ-------FPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV
PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4ACA_B:AUTOPDB; Probability=99.2; Identities=21%; Resolution=3.15A; MatchedRegionTemplate=15-186; TRANSLATION ELONGATION FACTOR SELB; SELENOCYSTEINE, TRANSLATION, SECIS ELEMENT, EF-SEC; HET: 5GP, CMH, SO4, DXC; {METHANOCOCCUS MARIPALUDIS}
---MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITID-IGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTG-EH-MLILDH--FNI
PIIVVITKSDNAGTEEIK-RTEMIMK-----SILQSTH-NLKNSSIIPISAKTGFGVDELKNLIITT----
##### No 398 #####
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>sequence1; MatchedRegionQuery=6-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD---------------RLRPLSY-----PDTDVILMCFSIDSPDSLENIPE
KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK-----DGVREVFEMATRAALQA
>6YXY_EQ:AUTOPDB; Probability=99.2; Identities=11%; Resolution=3.1A; MatchedRegionTemplate=112-297; bL28m, uL29m, uL30m, bL32m, bL35m; mitoribosome, assembly, LSU, RIBOSOME; HET: ATP, PM8, MG, SPD, NAD, GTP; {Trypanosoma brucei brucei}
-----HSFPEVCFIGKPNVGKSSIISCLLRNPRLGRAGRVRGTTRLLQ--FFNVGDALLLVDTPGYGGWKGRHLPQSVAERASAFAILFRYLALRSKGPLKRVYWVMEATKPVQ--PRDE
EIFVFLRN--EQIPFSIIISKLDYFGGDGA--ALRRQV------ESIYNFLGT-EDVPVLGVRADSSRPERCINMTALQHDITHYC---
##### No 399 #####
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>sequence1; MatchedRegionQuery=4-172
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT-----------------------------VFE-NYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID
SPDS-----LENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI----GAFGYMECSAKTKDGVREVFEMATRAALQA
>1SKQ_B:AUTOPDB; Probability=99.2; Identities=13%; Resolution=1.8A; MatchedRegionTemplate=5-205; Elongation factor 1-alpha; Elongation factors, archaea, protein synthesis; HET: GDP; {Sulfolobus solfataricus}
---SQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAK
KGEYEAGMSVEGQTREHIILAKT--MGLDQLIVAVNKMDLTEPPYDEKRYKEIV------DQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH------------
##### No 400 #####
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>sequence1; MatchedRegionQuery=4-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-------FENYVA--DIEVDGKQVELALWDTAGLEDY--------------DRLRPLS-------------YPDTDVIL
MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6N0B_C:AUTOPDB; Probability=99.2; Identities=15%; Resolution=1.739A; MatchedRegionTemplate=60-258; Septin-12; cytoskeleton component septin GTPase, STRUCTURAL; HET: GDP; {Homo sapiens}
---DPGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCL
YFIAPSGHG-LKPLDIEFMKRL---HEKVNIIPLIAKADTLTPEECQQFKKQ----------IMKEIQEH-KIKIYEFPETDDEEENKLVKKIKDRL---
##### No 401 #####
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>sequence1; MatchedRegionQuery=4-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-------FENYVA--DIEVDGKQVELALWDTAGLEDY--------------DRLRPLS-------------YPDTDVIL
MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6UQQ_A:AUTOPDB; Probability=99.2; Identities=15%; Resolution=2.75A; MatchedRegionTemplate=61-259; Septin-2, Septin-8; cytoskeleton protein, septin, STRUCTURAL PROTEIN; HET: GDP; {Homo sapiens}
---DPGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCL
YFIAPSGHG-LKPLDIEFMKRL---HEKVNIIPLIAKADTLTPEECQQFKKQ----------IMKEIQEH-KIKIYEFPETDDEEENKLVKKIKDRL---
##### No 402 #####
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>sequence1; MatchedRegionQuery=5-30
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5CK4_A:AUTOPDB; Probability=99.2; Identities=23%; Resolution=1.89A; MatchedRegionTemplate=63-88; Putative signal recognition particle protein; Arf-like GTPase, protein translocation, signaling; HET: GDP; {Chaetomium thermophilum}
----YTTLPSVLLIGPSGAGKTALLTLFER------------------------------------------------------------------------------------------
----------------------------------------------------------------
##### No 403 #####
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>sequence1; MatchedRegionQuery=5-128
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGK---------------QVELALWDTAGLE-------DYDRLRPLSYPDTDVILMCFSIDSPDSLEN
IPEKWT-----PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5EE0_A:AUTOPDB; Probability=99.2; Identities=19%; Resolution=2.2A; MatchedRegionTemplate=37-188; Small ubiquitin-related modifier,Obg-like ATPase 1; OSYCHF1, GTP-BINDING PROTEIN, AMP-PNP, YCHF-TYPE; {Oryza sativa subsp. japonica}
----FSSHLKIGIVGLPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYVPDERFDWLCQLYKPKSEVSAYLEINDIAGLVRGAHAGEGLGNAFLSHIRAVDGIFHVLRAFEDKEVTH
IDDSVDPVRDLETIGEELRLKDIEFVQNKIDDLEKS--------------------------------------------------------
##### No 404 #####
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>sequence1; MatchedRegionQuery=5-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---------------V-PTVFENYVADIEV---DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK
WTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2YWE_A:AUTOPDB; Probability=99.2; Identities=19%; Resolution=2.05A; MatchedRegionTemplate=3-181; GTP-binding protein lepA; G domain, Beta-barrel, Ferredoxin-like domain; {Aquifex aeolicus}
----QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTV-AN
FWKAV---EQDLVIIPVINKIDLPSADVD-R-VKKQ----I--EEVLG----LDPEEAILASAKEGIGIEEILEAIVNR----
##### No 405 #####
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>sequence1; MatchedRegionQuery=5-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---------------V-PTVFENYVADIEV---DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK
WTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2YWF_A:AUTOPDB; Probability=99.2; Identities=19%; Resolution=2.24A; MatchedRegionTemplate=3-181; GTP-binding protein lepA; G domain, Beta-barrel, Ferredoxin-like domain; HET: GNP; {Aquifex aeolicus}
----QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTV-AN
FWKAV---EQDLVIIPVINKIDLPSADVD-R-VKKQ----I--EEVLG----LDPEEAILASAKEGIGIEEILEAIVNR----
##### No 406 #####
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>sequence1; MatchedRegionQuery=7-175
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV--Y----------------------VPTV-----FEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID
SPDS---L---ENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI-----GAFGYMECSAKTKDGVREVFEMATRAALQA
>4D61_i:AUTOPDB; Probability=99.2; Identities=14%; Resolution=9.0A; MatchedRegionTemplate=202-403; 40S RIBOSOMAL PROTEIN SA, 40S; CRPV IRES, RIBOSOME, TERMINATION, RELEASE; {ORYCTOLAGUS CUNICULUS}
------EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISAR
KGEFETGFEKGGQTRE-HAMLAKT--AGVKHLIVLINKMDDPTVNWSNERYEECKE------KLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD---------
##### No 407 #####
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>sequence1; MatchedRegionQuery=5-128
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGK---------------QVELALWDTAGLE-------DYDRLRPLSYPDTDVILMCFSIDSPDSLEN
IPEKWT-----PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5EE3_B:AUTOPDB; Probability=99.2; Identities=19%; Resolution=2.9A; MatchedRegionTemplate=35-186; Small ubiquitin-related modifier,Obg-like ATPase 1; osychf1, GTP-BINDING PROTEIN, ATP, AMP-PNP; HET: ANP, EPE; {Oryza sativa subsp. japonica}
----FSSHLKIGIVGLPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYVPDERFDWLCQLYKPKSEVSAYLEINDIAGLVRGAHAGEGLGNAFLSHIRAVDGIFHVLRAFEDKEVTH
IDDSVDPVRDLETIGEELRLKDIEFVQNKIDDLEKS--------------------------------------------------------
##### No 408 #####
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>sequence1; MatchedRegionQuery=4-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-------P-TVFENY-----VADIEV------------------DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI
DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN-RIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2WSM_B:AUTOPDB; Probability=99.2; Identities=16%; Resolution=2.3A; MatchedRegionTemplate=34-221; HYDROGENASE EXPRESSION/FORMATION PROTEIN (HYPB); METAL BINDING PROTEIN; {ARCHAEOGLOBUS FULGIDUS}
---RESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDCDLLLIENVGNLICPV---DFDLGENYRVVMVSV
TEGDDVVEK---HPEIF-----RVADLIVINKVALAEAVGA--DVEK----------MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN--
##### No 409 #####
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>sequence1; MatchedRegionQuery=6-127
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPD----TDVILMCFSID-SPDSLENIPEKWTPEVKHF----CP
NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2GED_A:AUTOPDB; Probability=99.1; Identities=16%; Resolution=2.2A; MatchedRegionTemplate=255-380; Signal recognition particle receptor beta; protein transport, G protein, signal; HET: SO4; {Saccharomyces cerevisiae}
-----SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ---EPLSAADY--DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCEN
GIDILIACNKSELFTA---------------------------------------------------------
##### No 410 #####
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>sequence1; MatchedRegionQuery=4-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENY-VADIEV---------------------DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSL
ENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1KK3_A:AUTOPDB; Probability=99.1; Identities=14%; Resolution=1.9A; MatchedRegionTemplate=11-202; eIF2gamma, GUANOSINE-5'-DIPHOSPHATE; initiation of translation, TRANSLATION; HET: GDP; {Pyrococcus abyssi}
---SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPR
PQTREHL-MALQII-GQKNIIIAQNKIELVDKEKALENYRQIKE------FIEGT--VAENAPIIPISALHGANIDVLVKAIEDF----
##### No 411 #####
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>sequence1; MatchedRegionQuery=3-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENY-VADIEV---------------------DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSL
ENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1S0U_A:AUTOPDB; Probability=99.1; Identities=16%; Resolution=2.4A; MatchedRegionTemplate=36-228; Translation initiation factor 2 gamma; translation initiation, GTPase, EF-1A, tRNA; {Methanocaldococcus jannaschii}
--LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQ
PQTKEH-LMALEIL-GIDKIIIVQNKIDLVDEKQAEENYEQIKE------FVKGT--IAENAPIIPISAHHEANIDVLLKAIQDF----
##### No 412 #####
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>sequence1; MatchedRegionQuery=7-180
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQF---PEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII
LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR-IGAFGYMECSAKTKDGVREVFEMATRAALQA
>4ZU9_A:AUTOPDB; Probability=99.1; Identities=16%; Resolution=3.191A; MatchedRegionTemplate=3-168; Elongation factor SelB; Small GTPase, EF-Tu like, TRANSLATION; HET: SO4, GNP, MSE; {Aquifex aeolicus VF5}
------KYILFATAGHVDHGKTTLIKTLTGIDTDRLPEEKKRGLSIDIGFAYIDFPDINTRLEIIDVPGHERFIKNAIAGICSASGLILVVDPNEGIMP-QTIEHL-RVAKSF-GIKHGI
AVLTKMDKVDEELAHIAEEE----------LIAFLEKEEMNMEIVKVSAVTGQGIEDLKNSIKKL----
##### No 413 #####
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>sequence1; MatchedRegionQuery=6-127
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPD----TDVILMCFSID-SPDSLENIPEKWTPEVKHF----CP
NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2GED_B:AUTOPDB; Probability=99.1; Identities=16%; Resolution=2.2A; MatchedRegionTemplate=257-382; Signal recognition particle receptor beta; protein transport, G protein, signal; HET: SO4; {Saccharomyces cerevisiae}
-----SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ---EPLSAADY--DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCEN
GIDILIACNKSELFTA---------------------------------------------------------
##### No 414 #####
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>sequence1; MatchedRegionQuery=7-128
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-----EN---YVA--DIEVDGKQVELALWDTAGLEDYDRL--------------RPLSYPD--------------TDV
ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5CYO_A:AUTOPDB; Probability=99.1; Identities=19%; Resolution=2.0354A; MatchedRegionTemplate=22-177; Septin-9; septin 9 gtpase domain, HYDROLASE; HET: GDP; {Homo sapiens}
------FEFNIMVVGQSGLGKSTLINTLFKSKISRKSVQPTSEERIPKTIEIKSITHDIEEKGVRMKLTVIDTPGFGDHINNENCWQPIMKFINDQYEKYLQEEVNINRKKRIPDTRVHC
CLYFIPATGHSLRPLDI-EFMKRL---SKVVNIVPVIAKADTLTLE--------------------------------------------------------
##### No 415 #####
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>sequence1; MatchedRegionQuery=5-175
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-------------P-----------------TVFENY-VADIEVD----GKQVELALWDTAGLEDYDR---LRPLSYPDTDV
ILMCFSIDSPD---SLENIP---EKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTR-RELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4ZKD_A:AUTOPDB; Probability=99.1; Identities=19%; Resolution=2.181A; MatchedRegionTemplate=270-485; Superkiller protein 7 (Ski7); GTPase, translation, NGD, Ski, hydrolase; HET: GDP; {Saccharomyces cerevisiae}
----HPLNLTCLFLGDTNAGKSTLLGHLLYDLNEISMSSMRELQKKSSNLDPSSSNSFKVILDNTKTERENGFSMFKKVIQVENDLLPPSSTLTLIDTPGSIKYFNKETLNSILTFDPEV
YVLVIDCNYDSWEKSLDGPNNQIYEILKVISYLNKNSACKKHLIILLNKADLISWDKHRLEMIQSELNYVL--KENFQWT--DAEFQFIPCSGLLGSNLNKTEN---------
##### No 416 #####
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>sequence1; MatchedRegionQuery=5-175
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-------------P-----------------TVFENY-VADIEVD----GKQVELALWDTAGLEDYDR---LRPLSYPDTDV
ILMCFSIDSPD---SLENIP---EKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTR-RELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4ZKE_A:AUTOPDB; Probability=99.1; Identities=19%; Resolution=2.251A; MatchedRegionTemplate=269-484; Superkiller protein 7 (Ski7); GTPase, translation, NGD, Ski, hydrolase; HET: PGE, GTP; {Saccharomyces cerevisiae}
----HPLNLTCLFLGDTNAGKSTLLGHLLYDLNEISMSSMRELQKKSSNLDPSSSNSFKVILDNTKTERENGFSMFKKVIQVENDLLPPSSTLTLIDTPGSIKYFNKETLNSILTFDPEV
YVLVIDCNYDSWEKSLDGPNNQIYEILKVISYLNKNSACKKHLIILLNKADLISWDKHRLEMIQSELNYVL--KENFQWT--DAEFQFIPCSGLLGSNLNKTEN---------
##### No 417 #####
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>sequence1; MatchedRegionQuery=3-173
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-----------------------------PTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDS
PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI--GAFGYMECSAKTKDGVREVFEMATRAALQA
>3WY9_B:AUTOPDB; Probability=99.1; Identities=15%; Resolution=2.3A; MatchedRegionTemplate=6-195; Elongation factor 1-alpha, 50S ribosomal; multi-domain, GTPase, aminoacyl-tRNA delivery, GTP; HET: GDP; {Pyrococcus horikoshii OT3}
--PKEKPHVNIVFIGHVDHGKSTTIGRLLYDTGNIPETIIKKFEEMGEKGKSFKFAWVMDRLKEERERGITI-DVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATD
GVM-PQT-KEHAFLARTL-GIKHIIVTINKMDMVNYDQKV--FEKVK------AQVEKLLKTLGYKDFPVIPTSAWNGDNVVKK-----------
##### No 418 #####
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>sequence1; MatchedRegionQuery=5-175
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFP--EV------------YV----------PT------VFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID
SPDS------LENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKP-EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1R5B_A:AUTOPDB; Probability=99.1; Identities=14%; Resolution=2.35A; MatchedRegionTemplate=254-458; Eukaryotic peptide chain release factor; TRANSLATION TERMINATION, PEPTIDE RELEASE, GTPASE; {Schizosaccharomyces pombe}
----GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISAR
RGEFEAGFERGGQTREHA-VLART-QGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYN-SKTDVKYMPVSAYTGQNVKDRVD---------
##### No 419 #####
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>sequence1; MatchedRegionQuery=4-126
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-----FENY--------------VADIEV-----DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLE
NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5TY0_A:AUTOPDB; Probability=99.1; Identities=16%; Resolution=2.22A; MatchedRegionTemplate=8-150; Adenosylhomocysteinase (E.C.3.3.1.1); Structural Genomics, Center for Structural; HET: BGC; {Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)}
---PLKLYRNIGIAAHVDAGKTTTTERVLYYTGMSHKIGEVHDGAATMDWMVQEQERGITITSAATTCYWSGMDKQFESHRINIIDTPGHVDFMIEVERSLRVLDGAVVVFDSVAGVEPQ
S-ETVWRQ-AN--KYGVPRIVFVNKMDRMG----------------------------------------------------------
##### No 420 #####
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>sequence1; MatchedRegionQuery=7-181
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFP--E---------V-----YVPTVFENYVADIEV---DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK
WTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3CB4_D:AUTOPDB; Probability=99.1; Identities=20%; Resolution=2.8A; MatchedRegionTemplate=3-180; GTP-binding protein lepA; GTPAse, OB-fold, GTP-binding, Membrane, Nucleotide-binding; {Escherichia coli}
------NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTL-AN
CYTAME---MDLEVVPVLNKIDLPAADP-ERVAEE----------IEDIVG-IDATDAVRCSAKTGVGVQDVLERLVRDI---
##### No 421 #####
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>sequence1; MatchedRegionQuery=5-126
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT----------VF-----------ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP
EKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3VQT_A:AUTOPDB; Probability=99.1; Identities=16%; Resolution=1.8A; MatchedRegionTemplate=28-166; Peptide chain release factor 3; translation, release factor, GTPase; HET: GDP; {Desulfovibrio vulgaris}
----AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKG--VEAQT
RKLMDVCRM--RATPVMTFVNKMDREA----------------------------------------------------------
##### No 422 #####
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>sequence1; MatchedRegionQuery=5-126
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT----------VF-----------ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP
EKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3VR1_B:AUTOPDB; Probability=99.1; Identities=16%; Resolution=3.0A; MatchedRegionTemplate=28-166; Peptide chain release factor 3; translation, release factor, GTPase; HET: G4P; {Desulfovibrio vulgaris}
----AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKG--VEAQT
RKLMDVCRM--RATPVMTFVNKMDREA----------------------------------------------------------
##### No 423 #####
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>sequence1; MatchedRegionQuery=4-127
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT--------VFE--NYVADIEVDGKQVELALWDTAGLED-------YDRL-------RPLSYP-------------DTDVI
LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2QNR_B:AUTOPDB; Probability=99.1; Identities=18%; Resolution=2.6A; MatchedRegionTemplate=49-205; Septin-2; septin, Structural Genomics Consortium, SGC; HET: GDP; {Homo sapiens}
---KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCC
FYFISPFGHG-LKPLDVAFMKAI---HNKVNIVPVIAKADTLTL---------------------------------------------------------
##### No 424 #####
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>sequence1; MatchedRegionQuery=5-173
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY------------------------VPTV-----FENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID
SPDS---L---ENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI-----GAFGYMECSAKTKDGVREVFEMATRAALQA
>4CRN_P:AUTOPDB; Probability=99.1; Identities=13%; Resolution=9.1A; MatchedRegionTemplate=256-457; ERF3 IN RIBOSOME BOUND ERF1-ERF3-GDPNP; TRANSLATION, TERMINATION, CRYO-EM; HET: GNP; {SACCHAROMYCES CEREVISIAE}
----GKDHVSLIFMGHVDAGKSTMGGNLLYLTGSVDKRTIEKYEREAKDAGRQGWYLSWVMDTNKEERNDGKTIEVGKAYFETEKRRYTILDAPGHKMYVSEMIGGASQADVGVLVISAR
KGEYETGFERGGQTRE-HALLAKT--QGVNKMVVVVNKMDDPTVNWSKERYDQCV------SNVSNFLRAIGYNIKTDVVFMPVSGYSGANLKDH-----------
##### No 425 #####
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>sequence1; MatchedRegionQuery=4-126
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFP---------------------------EVY----VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI
DSPDS------LENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4CXG_A:AUTOPDB; Probability=99.1; Identities=14%; Resolution=8.7A; MatchedRegionTemplate=5-161; ELONGATION FACTOR 1A, 40S RIBOSOMAL; TRANSLATION, MAMMALIAN 80S RIBOSOME, ELONGATION; HET: M2G, OMC, PHE, 5MC, MIA, 7MG, 1MA, 2MG, 5MU, PSU, H2U; {ORYCTOLAGUS CUNICULUS}
---AEKPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERERGITID-LTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSA
RKGEFEAGMSTEGQTR-EHLLLARTM-GIEQIIVAVNKMDAPD----------------------------------------------------------
##### No 426 #####
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>sequence1; MatchedRegionQuery=5-175
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQF--PEVYV----------------------PT------VFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID
SPDS---L---ENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKP-EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1R5O_A:AUTOPDB; Probability=99.1; Identities=14%; Resolution=3.2A; MatchedRegionTemplate=254-458; Eukaryotic peptide chain release factor; TRANSLATION TERMINATION, PEPTIDE RELEASE, GTPASE; HET: GNP; {Schizosaccharomyces pombe}
----GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISAR
RGEFEAGFERGGQTREH-AVLART--QGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNS-KTDVKYMPVSAYTGQNVKDRVD---------
##### No 427 #####
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>sequence1; MatchedRegionQuery=4-126
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY------------------VPT-VFENYVADIE-----VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLE
NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6B8D_A:AUTOPDB; Probability=99.1; Identities=15%; Resolution=1.78A; MatchedRegionTemplate=9-151; Adenosylhomocysteinase (E.C.3.3.1.1, 1.8.1.7); Structural Genomics, Center for Structural; {Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)}
---PIERYRNIGISAHIDAGKTTTTERILFYTGVSHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMSQQFPQHRINVIDTPGHVDFTVEVERSMRVLDGAVMVYCAVGGVQPQ
-SET-VWRQANK--YEVPRIAFVNKMDRTG----------------------------------------------------------
##### No 428 #####
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>sequence1; MatchedRegionQuery=3-179
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-T----V-----------FENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT
PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2XEX_B:AUTOPDB; Probability=99.1; Identities=13%; Resolution=1.9A; MatchedRegionTemplate=6-182; ELONGATION FACTOR G; GTPASE, TRANSLATION, BIOSYNTHETIC PROTEIN; {STAPHYLOCOCCUS AUREUS}
--FSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWR
Q-ATT--YGVPRIVFVNKMDKLGANFE-YSVSTLH---------DRL-Q--ANAAPIQLPIGAEDEFEAIIDLVEM-----
##### No 429 #####
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>sequence1; MatchedRegionQuery=3-127
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP----------TV-----F-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTP
EVKHFCPNVPIILV-GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4H9G_A:AUTOPDB; Probability=99.1; Identities=19%; Resolution=1.93A; MatchedRegionTemplate=7-144; Elongation factor Tu-A (E.C.3.6.5.3); P-loop, GTPase, GTP Binding, tRNA; HET: SO4, GNP; {Thermus thermophilus}
--VRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM-PQTRE-HIL
LARQ--VGVPYIVVFMNKVDMVDD---------------------------------------------------------
##### No 430 #####
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>sequence1; MatchedRegionQuery=4-127
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP---------TVFEN-YVADIEVDGKQVELALWDTAGLED-------YDRL-------RPLSYP-------------DTDVI
LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2QNR_A:AUTOPDB; Probability=99.1; Identities=20%; Resolution=2.6A; MatchedRegionTemplate=50-206; Septin-2; septin, Structural Genomics Consortium, SGC; HET: MSE, GDP; {Homo sapiens}
---KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCC
FYFISPFGHG-LKPLDVAFMKAI---HNKVNIVPVIAKADTLTL---------------------------------------------------------
##### No 431 #####
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>sequence1; MatchedRegionQuery=3-127
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP---------------TVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTP
EVKHFCPNVPIILV-GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2C78_A:AUTOPDB; Probability=99.1; Identities=19%; Resolution=1.4A; MatchedRegionTemplate=14-151; ELONGATION FACTOR TU-A (E.C.3.1.5.1); HYDROLASE, GTPASE, TRANSLATION ELONGATION FACTOR; HET: GNP, PUL; {THERMUS THERMOPHILUS}
--VRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM-PQTRE-HIL
LARQ--VGVPYIVVFMNKVDMVDD---------------------------------------------------------
##### No 432 #####
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>sequence1; MatchedRegionQuery=7-128
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFP-EVYVPTV-------FENY--VADIEVDGKQVELALWDTAGLEDY-------DRL-------RPLSYP-------------DTDVI
LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6UPQ_A:AUTOPDB; Probability=99.1; Identities=19%; Resolution=1.86A; MatchedRegionTemplate=37-191; Septin-2, Septin-11; cytoskeleton protein, septin, STRUCTURAL PROTEIN; HET: GTP, GDP; {Homo sapiens}
------FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCC
FYFISPFGHG-LKPLDVAFMKAI---HNKVNIVPVIAKADTLTLK--------------------------------------------------------
##### No 433 #####
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>sequence1; MatchedRegionQuery=6-127
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSY---------PDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--
-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1H65_A:AUTOPDB; Probability=99.1; Identities=12%; Resolution=2.0A; MatchedRegionTemplate=44-176; CHLOROPLAST OUTER ENVELOPE PROTEIN OEP34; GTPASE, CHLOROPLAST, TRANSLOCON; HET: GDP; {PISUM SATIVUM}
-----VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLD-KLVAKAITDSFG
KGIWNKAIVALTHAQFSPP---------------------------------------------------------
##### No 434 #####
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>sequence1; MatchedRegionQuery=4-31
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN
KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5CK3_B:AUTOPDB; Probability=99.1; Identities=21%; Resolution=3.2A; MatchedRegionTemplate=56-83; SRX domain, Putative signal recognition; GTPase, Longin domain, regulator complex; HET: GOL, GTP; {Chaetomium thermophilum}
---QYTTLPSVLLIGPSGAGKTALLTLFERG-----------------------------------------------------------------------------------------
----------------------------------------------------------------
##### No 435 #####
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>sequence1; MatchedRegionQuery=5-126
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV----------------F-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT
PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6NOT_B:AUTOPDB; Probability=99.1; Identities=17%; Resolution=2.4A; MatchedRegionTemplate=13-147; Elongation factor G; National Institute of Allergy and; {Rickettsia prowazekii (strain Madrid E)}
----LEQIRNIGICAHIDAGKTTTTERILYYTGKSHKIGEVHEGGATMDWMEQEQERGITITSAATTCRWQDKVINIIDTPGHVDFTIEVERSLRVLDGAVAVFDGVAGVEP-QS-ETVW
RQADK--YNVPRMCFVNKMDRMG----------------------------------------------------------
##### No 436 #####
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>sequence1; MatchedRegionQuery=57-127
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED-------------YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK
HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4H1V_A:AUTOPDB; Probability=99.1; Identities=20%; Resolution=2.3A; MatchedRegionTemplate=141-222; Dynamin-1-like protein (E.C.3.6.5.5); GTPase domain, GTPase, Cytosol, HYDROLASE; HET: GNP; {Homo sapiens}
--------------------------------------------------------NLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKISREVD
--PDGRRTLAVITKLDLMDA---------------------------------------------------------
##### No 437 #####
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>sequence1; MatchedRegionQuery=6-173
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-------------YVPTV-----------------FENY-VADIEVD----GKQVELALWDTAGLEDYD---RLRPLSYPDTDV
ILMCFSIDSP---DSLENIP---EKWTPEVKH----FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD-MANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5G06_P:AUTOPDB; Probability=99.1; Identities=20%; Resolution=4.2A; MatchedRegionTemplate=265-477; EXOSOME COMPLEX COMPONENT RRP45, EXOSOME; HYDROLASE, RNA DECAY, EXOSOME, RNA; {SACCHAROMYCES CEREVISIAE}
-----PLNLTCLFLGDTNAGKSTLLGHLLYDLNEISMSSMRELQKKSSNLDPSSSNSFKVILDNTKTERENGFSMFKKVIQVENDLLPPSSTLTLIDTPGSIKYFNKETLNSILTFDPEV
YVLVIDCNYDSWEKSLDGPNNQIYEILKVISYLNKNSACKKHLIILLNKADLISWDKH--RLEMIQSE-LN-YVLKENFQWTDAEFQFIPCSGLLGSNLNKT-----------
##### No 438 #####
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>sequence1; MatchedRegionQuery=8-127
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-----TVFENY------------VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT
PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3J25_A:AUTOPDB; Probability=99.1; Identities=15%; Resolution=7.2A; MatchedRegionTemplate=3-135; Tetracycline resistance protein tetM; antibiotic resistance, TRANSLATION; HET: GCP; {Enterococcus faecalis}
-------IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGV-QAQTRI-LF
HALRK--MGIPTIFFINKIDQNGI---------------------------------------------------------
##### No 439 #####
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>sequence1; MatchedRegionQuery=6-126
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV------------------------P-----TVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID
SPD---SLE---NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3MCA_A:AUTOPDB; Probability=99.1; Identities=15%; Resolution=2.74A; MatchedRegionTemplate=329-483; Elongation factor 1 alpha-like protein; protein protein complex, Translation regulation; {Schizosaccharomyces pombe}
-----KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSS
QNNFERGFLENGQTREHA-YLLRAL-GISEIVVSVNKLDLMS----------------------------------------------------------
##### No 440 #####
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>sequence1; MatchedRegionQuery=6-127
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSY---------PDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--
-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1H65_B:AUTOPDB; Probability=99.1; Identities=12%; Resolution=2.0A; MatchedRegionTemplate=43-175; CHLOROPLAST OUTER ENVELOPE PROTEIN OEP34; GTPASE, CHLOROPLAST, TRANSLOCON; HET: MSE, GDP; {PISUM SATIVUM}
-----VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLD-KLVAKAITDSFG
KGIWNKAIVALTHAQFSPP---------------------------------------------------------
##### No 441 #####
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>sequence1; MatchedRegionQuery=5-126
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV----------------F-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT
PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6NOT_A:AUTOPDB; Probability=99.1; Identities=17%; Resolution=2.4A; MatchedRegionTemplate=19-153; Elongation factor G; National Institute of Allergy and; {Rickettsia prowazekii (strain Madrid E)}
----LEQIRNIGICAHIDAGKTTTTERILYYTGKSHKIGEVHEGGATMDWMEQEQERGITITSAATTCRWQDKVINIIDTPGHVDFTIEVERSLRVLDGAVAVFDGVAGVEP-QS-ETVW
RQADK--YNVPRMCFVNKMDRMG----------------------------------------------------------
##### No 442 #####
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>sequence1; MatchedRegionQuery=4-127
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPE----------------VYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTP
EVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1XB2_A:AUTOPDB; Probability=99.1; Identities=17%; Resolution=2.2A; MatchedRegionTemplate=65-200; Mitochondrial Elongation factors Tu and; Protein-protein complex, TRANSLATION; {Bos taurus}
---RDKPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITIN-AAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPM-PQT-REHLL
LARQ--IGVEHVVVYVNKADAVQD---------------------------------------------------------
##### No 443 #####
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>sequence1; MatchedRegionQuery=55-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL------RPLSYPD--TDVILMCFSIDSPDSLENIPEKWTPEVKHF-CP
NVPIILVGNKKDLRNDEHTRRELAKM---KQEP----------VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5HCI_E:AUTOPDB; Probability=99.0; Identities=14%; Resolution=2.3A; MatchedRegionTemplate=99-248; GPN-loop GTPase 1 (E.C.3.6.5.-); GPN-loop GTPase, Chaperone, Assembly, RNA; HET: GDP, GOL; {Saccharomyces cerevisiae}
------------------------------------------------------KFQNCIIDTPGQIECFVWSASGAIITESFASSFPTVIAYIVDTPRNSSPTTFMSNMLYACSILYKT
KLPMIVVFNKTDVCKADFAKEWMTDFESFQAAIKEDQDGYMSSLVNSMSLMLEEFYSQLDVVGVSSFTGDGFDEFMQCVDKKVD--
##### No 444 #####
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>sequence1; MatchedRegionQuery=55-182
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL------RPLSYPD--TDVILMCFSIDSPDSLENIPEKWTPEVKHF-CP
NVPIILVGNKKDLRNDEHTRRELAKM---KQEP----------VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5HCN_A:AUTOPDB; Probability=99.0; Identities=14%; Resolution=2.2A; MatchedRegionTemplate=99-248; GPN-loop GTPase 1 (E.C.3.6.5.-); GPN-loop GTPase, Chaperone, Assembly, RNA; HET: DAO, GCP, GOL; {Saccharomyces cerevisiae}
------------------------------------------------------KFQNCIIDTPGQIECFVWSASGAIITESFASSFPTVIAYIVDTPRNSSPTTFMSNMLYACSILYKT
KLPMIVVFNKTDVCKADFAKEWMTDFESFQAAIKEDQDGYMSSLVNSMSLMLEEFYSQLDVVGVSSFTGDGFDEFMQCVDKKVD--
##### No 445 #####
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>sequence1; MatchedRegionQuery=4-179
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFP-------EVYVPTVFENY-VADIEV-----------------------DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI
DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK----------DGVREVFEMATRAALQA
>5IZM_A:AUTOPDB; Probability=99.0; Identities=17%; Resolution=3.4A; MatchedRegionTemplate=25-233; Selenocysteine-specific elongation factor; elongation factor, selenocysteine, selenocysteine tRNA; HET: MSE, GNP; {Homo sapiens}
---GRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDV
TKGMQTQSA-ECLVI-GQ--IACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKT--LEN--TKFRGAPIIPVAAKPGGPEAPETEAPQGIPELIELLTS-----
##### No 446 #####
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>sequence1; MatchedRegionQuery=7-127
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPE----------------VYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTP
EVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>1D2E_D:AUTOPDB; Probability=99.0; Identities=16%; Resolution=1.94A; MatchedRegionTemplate=56-188; ELONGATION FACTOR TU (EF-TU); G-PROTEIN, BETA-BARREL, RNA BINDING PROTEIN; HET: GDP; {Bos taurus}
------PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGI-TINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGP-MPQT-REHLL
LARQ--IGVEHVVVYVNKADAVQD---------------------------------------------------------
##### No 447 #####
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>sequence1; MatchedRegionQuery=4-126
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP--------------------TV---FENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLE
NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>5TV2_A:AUTOPDB; Probability=99.0; Identities=17%; Resolution=1.6A; MatchedRegionTemplate=6-148; Ornithine aminotransferase, mitochondrial (E.C.2.6.1.13); GTP-binding domain, domain II, Structural; {Vibrio vulnificus}
---PIERYRNIGICAHVDAGKTTTTERILFYTGLSHKIGEVHDGAATMDWMEQEQERGITITSAATTTFWRGMEAQFQDHRVNIIDTPGHVDFTIEVERSLRVLDGAVVVFCGSSGVEP-
QSETVW-RQAD--KYHVPRMVFVNKMDRAG----------------------------------------------------------
##### No 448 #####
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>sequence1; MatchedRegionQuery=6-126
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-T---V----------FEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE
VKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>4ZCI_A:AUTOPDB; Probability=99.0; Identities=15%; Resolution=2.627A; MatchedRegionTemplate=37-168; GTP-binding protein TypA/BipA; BipA, GTPase, Nucleotide, GTP-BINDING PROTEIN; HET: NCO; {Escherichia coli (strain K12)}
-----EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKA
FA---YGLKPIVVINKVDRPG----------------------------------------------------------
##### No 449 #####
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>sequence1; MatchedRegionQuery=6-127
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYP---------DTDVILMCFSIDSPDSLENIPEKWTPEVKHF--
CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2J3E_A:AUTOPDB; Probability=99.0; Identities=15%; Resolution=3.2A; MatchedRegionTemplate=34-166; T7I23.11 PROTEIN; ATTOC33(R130A), DIMERIZATION, GTPASE, PROTEIN TRANSPORT; HET: GDP; {ARABIDOPSIS THALIANA}
-----MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGK
EIWCKTLLVLTHAQFSPP---------------------------------------------------------
##### No 450 #####
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>sequence1; MatchedRegionQuery=5-173
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP------------TVFENY--------------------VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFS
IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI----GAFGYMECSAKTKDGVREVFEMATRAALQA
>1ZUN_B:AUTOPDB; Probability=99.0; Identities=17%; Resolution=2.7A; MatchedRegionTemplate=36-229; Sulfate adenylyltransferase subunit 2 (E.C.2.7.7.4); beta barrel, switch domain, heterodimer; HET: GDP, AGS; {Pseudomonas syringae}
----RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVD
ARYGVQTQ-T-RRHSYIASL-LGIKHIVVAINKMDLNGFDERV--FESIK------ADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK-----------
##### No 451 #####
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>sequence1; MatchedRegionQuery=4-179
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFP-------EVYVPTVFENY-VADIEV-----------------------DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI
DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK----------DGVREVFEMATRAALQA
>5IZL_A:AUTOPDB; Probability=99.0; Identities=17%; Resolution=2.72A; MatchedRegionTemplate=24-232; Selenocysteine-specific elongation factor; elongation factor, selenocysteine, selenocysteine tRNA; HET: GCP; {Homo sapiens}
---GRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDV
TKGMQTQSA-ECLVI-GQ--IACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQK--TLEN--TKFRGAPIIPVAAKPGGPEAPETEAPQGIPELIELLTS-----
##### No 452 #####
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>sequence1; MatchedRegionQuery=5-173
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPE-------------------------------VYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI
DSPDSLEN------IPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3P26_A:AUTOPDB; Probability=99.0; Identities=14%; Resolution=2.5A; MatchedRegionTemplate=168-366; Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational; {Saccharomyces cerevisiae}
----ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVS-ICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDC
STN-AFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWSQQ--RFEEIKSKL-L-PYLVDIGFFEDNINWVPISGFSGEGVYKI-----------
##### No 453 #####
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>sequence1; MatchedRegionQuery=6-127
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSY---------PDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--
CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3DEF_A:AUTOPDB; Probability=99.0; Identities=15%; Resolution=1.96A; MatchedRegionTemplate=39-171; T7I23.11 protein (E.C.3.6.5.2); chloroplast, Toc33, GTPase, HYDROLASE; HET: GDP; {Arabidopsis thaliana}
-----MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGK
EIWCKTLLVLTHAQFSPP---------------------------------------------------------
##### No 454 #####
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>sequence1; MatchedRegionQuery=57-127
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED-------------YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK
HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>3T34_B:AUTOPDB; Probability=99.0; Identities=22%; Resolution=2.405A; MatchedRegionTemplate=137-218; Dynamin-related protein 1A, LINKER, Dynamin-related; dynamin-like protein 1A, GTPase, membrane; HET: GDP, ALF; {Arabidopsis thaliana, synthetic, Arabidopsis thaliana}
--------------------------------------------------------NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVD
--PSGDRTFGVLTKIDLMDK---------------------------------------------------------
##### No 455 #####
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>sequence1; MatchedRegionQuery=5-179
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-------V--ADIEVDGKQVELALWDTAGLEDYDR--------------LRPLSY-------------PDTDVIL
MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2QAG_C:AUTOPDB; Probability=99.0; Identities=15%; Resolution=4.0A; MatchedRegionTemplate=42-237; Septin-2, Septin-6, Septin-7; Cell cycle, Cell division, GTP-binding; HET: GDP, GTP; {Homo sapiens}
----RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCL
YFIAPSGHG-LKPLDIEFMKRL---HEKVNIIPLIAKADTLTPEECQQFKKQ----------IMKEIQEH-KIKIYEFPETDDEEENKLVKKIKD-----
##### No 456 #####
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>sequence1; MatchedRegionQuery=5-92
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-TVFENYVADIEVDGKQ---------------VELALWDTAGLE-------DYDRLRPLSYPDTDVILMCFSIDSPDSLEN
IPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>2OHF_A:AUTOPDB; Probability=99.0; Identities=19%; Resolution=2.7A; MatchedRegionTemplate=34-144; GTP-binding protein 9; ATPase GTPase P-loop; HET: ACP; {Homo sapiens}
----FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED-----
---------------------------------------------------------------------------------------
##### No 457 #####
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>sequence1; MatchedRegionQuery=5-128
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-------N--YVADIEVDGKQVELALWDTAGLEDYDR--------------LRPLSYPDT--------------DVI
LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6MQ9_A:AUTOPDB; Probability=99.0; Identities=16%; Resolution=1.86A; MatchedRegionTemplate=68-224; Septin-12; cytoskeleton component septin GTPase spermatogenesis; HET: GNP; {Homo sapiens}
----MGFEFNIMVVGQSGLGKSTMVNTLFKSKVWKSNPPGLGVPTPQTLQLHSLTHVIEEKGVKLKLTVTDTPGFGDQINNDNCWDPILGYINEQYEQYLQEEILITRQRHIPDTRVHCC
VYFVPPTGHCLRPLDI-EFLQRL---CRTVNVVPVIARADSLTME--------------------------------------------------------
##### No 458 #####
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>sequence1; MatchedRegionQuery=5-128
GAMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-------N--YVADIEVDGKQVELALWDTAGLEDYDR--------------LRPLSYPDT--------------DVI
LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA
>6MQB_A:AUTOPDB; Probability=99.0; Identities=16%; Resolution=2.12A; MatchedRegionTemplate=68-224; Septin-12; cytoskeleton component septin GTPase spermatogenesis; HET: GNP; {Homo sapiens}
----MGFEFNIMVVGQSGLGKSTMVNTLFKSKVWKSNPPGLGVPTPQTLQLHSLTHVIEEKGVKLKLTVTDTPGFGDQINNDNCWDPILGYINEQYEQYLQEEILITRQRHIPDTRVHCC
VYFVPPTGHCLRPLDI-EFLQRL---CRTVNVVPVIARADSLTME--------------------------------------------------------
############## END OF PAIRWISE ALI SECTION ##############
####### START OF PROFILES PAIR ALIGNMENTS SECTION #######
##### No 1 #####
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>5JCP_A Arf-GAP with Rho-GAP domain, ANK; RhoA, RhoGAP, ARAP3, SIGNALING PROTEIN; HET: GDP, ALF; 2.1A {Homo sapiens}
Probab=99.80 E-value=8.3e-24 Score=159.90 Aligned_cols=179 Identities=98% Similarity=1.512 Sum_probs=117.7 Template_Neff=10.800
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
.....+|+++|..++|||||++++..........++........+...+....+.+||+||++.+...+..++..+|+++
T Consensus 240 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~pG~~~~~~~~~~~~~~~d~~i 319 (419)
T 5JCP_A 240 AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 319 (419)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHC--------------CEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhCCCCCCCCCCCCCceeEEEEEECCEEEEEEEEeCCCCHHHHHhhHHHhcCCCEEE
Confidence 45667999999999999999999987765443333322222333344445678899999999888888888889999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
+|+|+++..++......+...+.......|+++|+||+|+.........................++...+...++++|+
T Consensus 320 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 399 (419)
T 5JCP_A 320 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 399 (419)
T ss_dssp EEEETTCHHHHHHCCCCCHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccccCCcccHHHHHHHHhcccCHHHHHHHHHHhCCCCEEEeec
Confidence 99999988777766556666554443578999999999998743322211111111111122222333333367899999
Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184)
.++.|+.++|+++.+.+++
T Consensus 400 ~~~~~i~~~~~~l~~~~~~ 418 (419)
T 5JCP_A 400 KTKDGVREVFEMATRAALQ 418 (419)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred ccCCCHHHHHHHHHHHHHh
Confidence 9999999999999888765
##### No 2 #####
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>6V6U_A Transforming protein RhoA (E.C.3.6.5.2); GTPase, Switch I, Switch II; HET: DIO, GDP; 1.16A {Homo sapiens}
Probab=99.89 E-value=1.1e-27 Score=161.38 Aligned_cols=182 Identities=97% Similarity=1.482 Sum_probs=129.6 Template_Neff=11.400
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
|.+.++++|+++|.+++|||||++++..........++....+...+..++..+.+.+||++|++.+...+..++.++|+
T Consensus 2 ~~~~~~~~i~~~G~~~~GKstl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 81 (183)
T 6V6U_A 2 SMAAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 81 (183)
T ss_dssp ---CEEEEEEEEESTTSSHHHHHHTSCSSCCTTCCCSSCCSCEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred CccceeeEEEEEcCCCCCcHHHHHHhccCCCCcccCCCcceeeEEEEEECCEEEEEEEEcCCCCcchhhhhhhhCCCCCE
Confidence 45678899999999999999999988877665444443333333334444556788999999998888788888899999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++|+++++..++....+.+...+....+..|+++++||+|+...........+.............++.......++.+
T Consensus 82 ii~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (183)
T 6V6U_A 82 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 161 (183)
T ss_dssp EEEEEETTCHHHHHHCCCCCHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEeeCCChHHhhhhHHhchHHHHHHCCCCCEEEEEechhcCCCHHhHHHHHhccCCCCCHHHHHHHHHHhCCcEEEEc
Confidence 99999999887777766666666655445789999999999987543333222222212222223333444444678899
Q sequence1 163 SAKTKDGVREVFEMATRAALQA 184 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~~ 184 (184)
|++++.|+.++|+++.+.++++
T Consensus 162 s~~~~~~i~~~~~~l~~~~~~~ 183 (183)
T 6V6U_A 162 SAKTKDGVREVFEMATRAALQA 183 (183)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHC
T ss_pred CCCCcccHHHHHHHHHHHHhhC
Confidence 9999999999999999988764
##### No 3 #####
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>3LW8_A Transforming protein RhoA, IpgB2; IpgB2, RhoA, GTPase, GEF, GEF-GTPase-complex; HET: GDP; 1.85A {Homo sapiens}
Probab=99.89 E-value=7.7e-28 Score=161.80 Aligned_cols=183 Identities=96% Similarity=1.463 Sum_probs=130.1 Template_Neff=12.000
Q sequence1 2 AMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
.+.+++..+|+++|.+|+|||||++++..........++....+......++..+.+.+||++|++.+...+..++..++
T Consensus 3 ~~~~~~~~~i~i~G~~~~GKst~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 82 (185)
T 3LW8_A 3 LGSAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD 82 (185)
T ss_dssp CGGGSCEEEEEEEESTTSSHHHHHHHHHHSSCCCSCCCSCCCCEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCC
T ss_pred CCccceeeEEEEEcCCCCChHHHHHHHccCCCCcccCCCceeeeEEEEEECCEEEEEEEEeCCCCcchhhhhhhcCCCCC
Confidence 35677889999999999999999999987665444333333333334444455678999999999888878888888999
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
++++|+|+++..++....+.+...+.......|+++++||+|+...........+.............++.....+.+++
T Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (185)
T 3LW8_A 83 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 162 (185)
T ss_dssp EEEEEEETTCHHHHHHCCCCCHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEeeCCChHHHhchhHhcHHHHHHHCCCCCEEEEEechhcCCCHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcEEEE
Confidence 99999999987777766566666555444578999999999998754332222222221112222223333334467889
Q sequence1 162 CSAKTKDGVREVFEMATRAALQA 184 (184)
Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~~~ 184 (184)
+|++++.|+.++|+++.+.++++
T Consensus 163 ~Sa~~~~~i~~~~~~l~~~~~~~ 185 (185)
T 3LW8_A 163 CSAKTKDGVREVFEMATRAALQA 185 (185)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHTC
T ss_pred CCCCCcccHHHHHHHHHHHHhhC
Confidence 99999999999999999988764
##### No 4 #####
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>4MIT_A Rho family GTPase (E.C.3.6.5.2), Serine/threonine; G domain, p21 binding domain; HET: MG, GTP; 2.35A {Entamoeba histolytica}
Probab=99.87 E-value=1.1e-26 Score=157.04 Aligned_cols=180 Identities=51% Similarity=0.906 Sum_probs=122.6 Template_Neff=11.200
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
...+.++|+++|.+++|||||++++....+...+.++....+......++..+.+.+||++|++.+...+..++..++++
T Consensus 6 ~~~~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 85 (186)
T 4MIT_A 6 EKPTSIKLVVVGDGAVGKTCLLISYSIRKFPEDYIPTVFDNYVVSLTAGTRQIQLALWDTAGLEEYDQLRPLSYSSASIF 85 (186)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeeeEEEEECCCCCChHHHHHHHHcCCCCccccCCcccceEEEeeeCCEEEEEEEEeCCCCcchhhhhhhccCCCcEE
Confidence 35678999999999999999999998876655444443333333333334457889999999988887787788889999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|+|+++..++......|...+.......|+++++||.|+...........+.....+.......++.......++.+|
T Consensus 86 ilv~d~~~~~~~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 165 (186)
T 4MIT_A 86 LICFSVTSSVSYDNVITKWHPEVIHFAPKVPIILVGTKLDTRNDPAIVKRLTEQGMTVINTAKGEELKNRIKAVKYIECS 165 (186)
T ss_dssp EEEEETTCHHHHHHCCCCCHHHHHHHCTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEEECCChhHHHHHHHhhHHHHHHHCCCCCEEEEecccccCCCHHHHHHHHHcCCceecHHHHHHHHHHhCCcEEEEcc
Confidence 99999998776665544555444333346899999999999764322221111111111222222233333335788999
Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184)
++++.|+.++|.++.+.+++
T Consensus 166 a~~~~~i~~~~~~i~~~~~~ 185 (186)
T 4MIT_A 166 AKTSENLKTVFDEAVKTVLM 185 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCChhHHHHHHHHHHHHhc
Confidence 99999999999999888765
##### No 5 #####
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>4MIT_D Rho family GTPase (E.C.3.6.5.2), Serine/threonine; G domain, p21 binding domain; HET: GTP, MG; 2.35A {Entamoeba histolytica}
Probab=99.87 E-value=1.1e-26 Score=157.04 Aligned_cols=180 Identities=51% Similarity=0.906 Sum_probs=123.5 Template_Neff=11.200
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
...+.++|+++|.+++|||||++++....+...+.++....+......++..+.+.+||++|++.+...+..++..++++
T Consensus 6 ~~~~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 85 (186)
T 4MIT_D 6 EKPTSIKLVVVGDGAVGKTCLLISYSIRKFPEDYIPTVFDNYVVSLTAGTRQIQLALWDTAGLEEYDQLRPLSYSSASIF 85 (186)
T ss_dssp CCCEEEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeeeEEEEECCCCCChHHHHHHHHcCCCCccccCCcccceEEEeeeCCEEEEEEEEeCCCCcchhhhhhhccCCCcEE
Confidence 35678999999999999999999998876655444443333333333334457889999999988887787788889999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|+|+++..++......|...+.......|+++++||.|+...........+.....+.......++.......++.+|
T Consensus 86 ilv~d~~~~~~~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 165 (186)
T 4MIT_D 86 LICFSVTSSVSYDNVITKWHPEVIHFAPKVPIILVGTKLDTRNDPAIVKRLTEQGMTVINTAKGEELKNRIKAVKYIECS 165 (186)
T ss_dssp EEEEETTCHHHHHHCCCCCHHHHHHHCTTSCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEEECCChhHHHHHHHhhHHHHHHHCCCCCEEEEecccccCCCHHHHHHHHHcCCceecHHHHHHHHHHhCCcEEEEcc
Confidence 99999998776665544555444333346899999999999764322221111111111222222233333335788999
Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184)
++++.|+.++|.++.+.+++
T Consensus 166 a~~~~~i~~~~~~i~~~~~~ 185 (186)
T 4MIT_D 166 AKTSENLKTVFDEAVKTVLM 185 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHhc
Confidence 99999999999999888765
##### No 6 #####
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>3SEA_A GTP-binding protein Rheb; globular, Hydrolase; HET: GDP, GNP; 2.0A {Homo sapiens}
Probab=99.85 E-value=7.4e-26 Score=150.77 Aligned_cols=164 Identities=29% Similarity=0.398 Sum_probs=111.9 Template_Neff=10.900
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
.+..+|+++|.+++||||+++++....+.....++....+......++..+.+.+||++|++.+...+..+...++++++
T Consensus 2 ~~~~~i~i~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 81 (167)
T 3SEA_A 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 81 (167)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCTTSCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCSSCCTTCCEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCccccCCCcccceEEEEEECCEEEEEEEEeCCCCccccccchHhcCCCCEEEE
Confidence 35689999999999999999998876554333333222222223333445788999999998777767777778899999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
|+++.+..++......+....... ....|+++++||.|+...... ...+...++...+ ..++++|+
T Consensus 82 v~~~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~~K~D~~~~~~~------------~~~~~~~~~~~~~-~~~~e~S~ 148 (167)
T 3SEA_A 82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVI------------SYEEGKALAESWN-AAFLESSA 148 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECTTCGGGCCS------------CHHHHHHHHHHTT-CEEEECCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcccCcCccC------------CHHHHHHHHHHhC-CcEEEEec
Confidence 999998776655433333322211 236889999999998763211 1122222333333 47899999
Q sequence1 165 KTKDGVREVFEMATRAAL 182 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~ 182 (184)
.++.++.++|.+++....
T Consensus 149 ~~~~~~~~~f~~~~~~~~ 166 (167)
T 3SEA_A 149 KENQTAVDVFRRIILEAE 166 (167)
T ss_dssp TCHHHHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHh
Confidence 999999999998877654
##### No 7 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6BCB_F Transforming protein RhoA, Rho guanine; Rho GTPase Guanine Nucleotide Exchange; HET: GSP, EDO; 1.401A {Homo sapiens}
Probab=99.85 E-value=1.1e-25 Score=151.53 Aligned_cols=181 Identities=97% Similarity=1.480 Sum_probs=127.3 Template_Neff=11.900
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
......+|+++|.+++|||||++++....+.....++....+......++....+.+||++|++.+...+..++..++++
T Consensus 5 ~~~~~~~i~l~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 84 (185)
T 6BCB_F 5 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 84 (185)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGTCTTCSEE
T ss_pred ccceeeEEEEEcCCCCChHHHHHHHhcCCCCcccCCCcceeeEEEEEECCEEEEEEEEeCCCchhHHhhhhhcCCCCCEE
Confidence 45678999999999999999999998766544433333223333334444456789999999887777788888899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|+++++..++....+.+...+.......|+++++||.|+.........+.+.............++.......++.+|
T Consensus 85 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivvv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (185)
T 6BCB_F 85 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 164 (185)
T ss_dssp EEEEETTCHHHHHHCCCCCHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEeeCCChHHhhcchHhhHHHHHHHCCCCCEEEEEecccccCCHHHHHHHHhccCCCCCHHHHHHHHHHhCCcEEEEcC
Confidence 99999998777776655666655544457899999999999875433333322222222222222333333446788999
Q sequence1 164 AKTKDGVREVFEMATRAALQA 184 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~~ 184 (184)
++++.|+.++|+++.+.++++
T Consensus 165 a~~~~~i~~~~~~~~~~~~~~ 185 (185)
T 6BCB_F 165 AKTKDGVREVFEMATRAALQA 185 (185)
T ss_dssp TTTCTTHHHHHHHHHHHHHCC
T ss_pred CCCCccHHHHHHHHHHHHhhC
Confidence 999999999999999988764
##### No 8 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6JMG_A DnaJ homolog subfamily C member; small GTPase, HYDROLASE; HET: GTP; 2.701A {Xenopus laevis}
Probab=99.85 E-value=1.1e-25 Score=161.81 Aligned_cols=165 Identities=21% Similarity=0.426 Sum_probs=115.8 Template_Neff=10.600
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
....++|+++|.+++|||||++++....+.....++....+. ..+..++..+.+.+||++|++.+...+..++..++++
T Consensus 13 ~~~~~ki~iiG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 92 (281)
T 6JMG_A 13 KALRIKVISMGNAEVGKSCIIKRYCEKRFVPKYQATIGIDYGVTKVHIKDREIKVNIFDMAGHPFFYEVRNEFYKDTQGV 92 (281)
T ss_dssp -CEEEEEEEECCTTSSHHHHHHHHHHCCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred ccceEEEEEECCCCCCHHHHHHHHhcCCCCcccCCceEEEEEEEEEEECCEEEEEEEEeCCCChhhHHHHHHHccCCcEE
Confidence 456789999999999999999999977665444443333322 2233445567899999999999988898899999999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFG 158 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
++|+|++++.++.....++..+.... ....|+++|+||+|+....... ......++...+ ..
T Consensus 93 ilV~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~------------~~~~~~~~~~~~-~~ 159 (281)
T 6JMG_A 93 ILVYDVGHKETFESLDGWLAEMKQELGPQGNIDNIVFAVCANKIDSTKHRSVD------------ESEGRLWSESKG-FL 159 (281)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTTTTCCGGGSEEEEEEECTTCCSCCCSC------------HHHHHHHHHTTT-CE
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHCCCCCccccEEEEEeeCccCCcCCCCC------------HHHHHHHHHHhC-Ce
Confidence 99999999877776643333332221 1257899999999987532110 011111122222 57
Q sequence1 159 YMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 159 ~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
++++|++++.|+.++|.++...+.
T Consensus 160 ~~~~Sa~~~~~i~~~f~~l~~~~~ 183 (281)
T 6JMG_A 160 YFETSAQSGEGINEMFQAFYSAIV 183 (281)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 899999999999999998887654
##### No 9 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2CLS_A RHO-RELATED GTP-BINDING PROTEIN RHO6; NUCLEOTIDE-BINDING, GTP-BINDING PROTEIN RHO6, MEMBRANE; HET: GTP; 2.31A {HOMO SAPIENS}
Probab=99.83 E-value=3.8e-25 Score=150.80 Aligned_cols=181 Identities=44% Similarity=0.795 Sum_probs=122.3 Template_Neff=11.500
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
+......+|+++|..++|||+|++++....+.....++....+......++....+.+||++|.+.+...+..++..+++
T Consensus 6 ~~~~~~~~i~~~G~~~~GKs~li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 85 (198)
T 2CLS_A 6 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 85 (198)
T ss_dssp --CEEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEECSSCEEEEEEEEECCCGGGTTTGGGGGTTCSE
T ss_pred CCCcceeEEEEECCCCCCHHHHHHHHhhCCCCCccCCcceEEEEEEeeeCCcEEEEEEEeCCCCcccccchHhhcCCCCE
Confidence 34567789999999999999999999876655433333333333233344456788999999998888778888889999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++|+|+.+..++......|...+....+..|+++++||.|+.........................++...+...++++
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~v~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (198)
T 2CLS_A 86 VLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEG 165 (198)
T ss_dssp EEEEEETTCTTTTTTHHHHHHHHHHHHCTTSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEEC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEecHHhccCHHHHHHHhhccCCCCCHHHHHHHHHHhCCCEEEEe
Confidence 99999999877776644455555544335789999999999876432111111111111222333344444443458899
Q sequence1 163 SAKTKD-GVREVFEMATRAALQ 183 (184)
Q Consensus 163 s~~~~~-~i~~~~~~~~~~~~~ 183 (184)
|++++. |+.++|.++.+.+++
T Consensus 166 s~~~~~~~i~~~~~~l~~~~~~ 187 (198)
T 2CLS_A 166 SAFTSEKSIHSIFRTASMLCLN 187 (198)
T ss_dssp BTTTBHHHHHHHHHHHHHHHC-
T ss_pred cCcCCcchHHHHHHHHHHHHhc
Confidence 999999 999999998887654
##### No 10 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2ATX_B small GTP binding protein TC10; TC10, GTPase, P-loop, alpha-beta, HYDROLASE; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=4.2e-25 Score=149.49 Aligned_cols=179 Identities=53% Similarity=0.937 Sum_probs=123.9 Template_Neff=12.100
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
.....+|+++|..++|||+|++++....+.....++........+...+..+.+.+||++|++.+...+..++..+++++
T Consensus 15 ~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 94 (194)
T 2ATX_B 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEEESTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEEECCCSSSSTTTGGGGCTTCSEEE
T ss_pred CcceEEEEEECCCCCCchHHHHHHccCCCCcccCCCccceEEEEEEECCEEEEEEEEeCCCCcchhhcHhHcCCCCCEEE
Confidence 45678999999999999999999987655443333222222333334445677899999999887777777888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
+|+|+++..++......|...+.......|+++++||.|+.........................++...+...++++|+
T Consensus 95 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 174 (194)
T 2ATX_B 95 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 174 (194)
T ss_dssp EEEETTCHHHHHHCCCCCHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHGGGTCCCCCHHHHHHHHHHTTCSCEEECCT
T ss_pred EEEeCCCHHHHHHHHHhhHHHHHHHCCCCCEEEEEcCcccCCCHHHHHHHhcCCCCCccHHHHHHHHHHhCCCeEEEecC
Confidence 99999988777766556666554443578999999999987643222221111111122222333344444467899999
Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184)
+++.|+.++|.++.+.+++
T Consensus 175 ~~~~~i~~~~~~i~~~~~~ 193 (194)
T 2ATX_B 175 LTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CcCccHHHHHHHHHHHHhC
Confidence 9999999999999887764
##### No 11 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3Q3J_B Plexin-A2, Rho-related GTP-binding protein Rho6; Ras-binding domain, plexin, small gtpase; HET: GNP; 1.971A {Homo sapiens}
Probab=99.83 E-value=6.5e-25 Score=151.84 Aligned_cols=179 Identities=45% Similarity=0.808 Sum_probs=118.5 Template_Neff=10.800
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
....++|+++|.+++|||+|++++....+.....++....+.......+..+.+.+||++|.+.+...+..++..+|+++
T Consensus 24 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i 103 (214)
T 3Q3J_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHCCCCCSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CcceEEEEEECCCCCCHHHHHHHHhhCCCCcccCCCcceEEEEEeeeCCeeEEEEEEeCCCChhhhhchHHhcCCCCEEE
Confidence 45678999999999999999999987655443333332222222333445678899999998877777888888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
+|+|+++..++......|...+.......|+++|+||+|+.....................+...++...+...++++|+
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 183 (214)
T 3Q3J_B 104 LCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 183 (214)
T ss_dssp EEEETTCTHHHHHCCCCCHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEeCCChHHHHHHHHHHHHHHHHHCCCCeEEEEEcccccccChHHHHHHhhccCCCCCHHHHHHHHHHhCCCEEEEecC
Confidence 99999988777764445555444333578999999999987532211111111111112223333344444345889999
Q sequence1 165 KTKD-GVREVFEMATRAALQ 183 (184)
Q Consensus 165 ~~~~-~i~~~~~~~~~~~~~ 183 (184)
+++. |+.++|.++...+++
T Consensus 184 ~~~~~~i~~~~~~l~~~~~~ 203 (214)
T 3Q3J_B 184 FTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp TTCHHHHHHHHHHHHHHHHC
T ss_pred CCCcchHHHHHHHHHHHHhc
Confidence 9999 999999998877653
##### No 12 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3X1X_A Ras-related protein Rap-1b; SIGNAL TRANSDUCTION, SIGNALING PROTEIN; HET: GNP; 1.0A {Rattus norvegicus}
Probab=99.82 E-value=1e-24 Score=144.26 Aligned_cols=164 Identities=30% Similarity=0.494 Sum_probs=112.8 Template_Neff=12.100
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC 86 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (184)
+..+|+++|.+++|||||++++....+.....++....+......++....+.+||++|+..+...+..+...+++++++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 3X1X_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSCCEEEEEEEETTEEEEEEEEECCCGGGCCTTHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCchhcCCCCccceeEEEEEECCEEEEEEEEECCCchhHHHHHHHHhhcCCEEEEE
Confidence 46899999999999999999998765544333332222233333344456789999999888877777788899999999
Q sequence1 87 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184)
+++.+..++......+....... ....|+++++||+|+....... .......+.......++++|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~~k~d~~~~~~~~------------~~~~~~~~~~~~~~~~~~~s~~ 149 (167)
T 3X1X_A 82 YSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVG------------KEQGQNLARQWSNCAFLESSAK 149 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECTTCGGGCCSC------------HHHHHHHHHHTTCCCEEECBTT
T ss_pred EeCCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccccccccccC------------HHHHHHHHHHhcCCEEEEeecC
Confidence 99998776665533333222211 2468999999999987532110 1111112222233678899999
Q sequence1 166 TKDGVREVFEMATRAAL 182 (184)
Q Consensus 166 ~~~~i~~~~~~~~~~~~ 182 (184)
++.|+.++|+++.+.+.
T Consensus 150 ~~~~i~~~~~~l~~~~~ 166 (167)
T 3X1X_A 150 SKINVNEIFYDLVRQIN 166 (167)
T ss_dssp TTBSHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHh
Confidence 99999999999988765
##### No 13 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2A5J_A Ras-related protein Rab-2B; GTPase, Signal transduction, Structural Genomics; HET: GDP; 1.501A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=1.1e-24 Score=148.11 Aligned_cols=168 Identities=29% Similarity=0.462 Sum_probs=111.8 Template_Neff=10.900
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
+.....+||+++|..++|||+|++++..........++.... .......++....+.+||++|.+.+...+..++..+|
T Consensus 16 ~~~~~~~ki~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 95 (191)
T 2A5J_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred CCCceEEEEEEECCCCCCHHHHHHHHcCCCCCCccccceEEEEEEEEEEECCEEEEEEEEeCCCchHHHHhhHHHhcCCC
Confidence 445677899999999999999999988765433222221111 1112223344567899999999888877888888999
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
++++|+|+++..++.....++...........|+++++||+|+....... ......++... ...+++
T Consensus 96 ~vi~v~d~s~~~s~~~~~~~~~~~~~~~~~~~pvilv~nK~D~~~~~~~~------------~~~~~~~~~~~-~~~~~~ 162 (191)
T 2A5J_A 96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVK------------REEGEAFAREH-GLIFME 162 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHH-TCEEEE
T ss_pred EEEEEEeCCChHHHHHHHHHHHHHHHHCCCCCEEEEEEecccccccccCC------------HHHHHHHHHHc-CCEEEE
Confidence 99999999987666655443333222223468999999999986532110 00111112222 246788
Q sequence1 162 CSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
+|+.++.|+.++|+++++.+.+
T Consensus 163 ~Sa~~~~~i~e~~~~l~~~~~~ 184 (191)
T 2A5J_A 163 TSAKTACNVEEAFINTAKEIYR 184 (191)
T ss_dssp ECTTTCTTHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887654
##### No 14 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4DJT_B GTP-binding nuclear protein GSP1; Structural Genomics, Seattle Structural Genomics; HET: GDP; 1.8A {Encephalitozoon cuniculi}
Probab=99.82 E-value=1.2e-24 Score=151.15 Aligned_cols=166 Identities=23% Similarity=0.376 Sum_probs=109.8 Template_Neff=10.400
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-A-DIEVDGKQVELALWDTAGLEDYDRLRPLSYPDT 80 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~-~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 80 (184)
+......+|+++|.+++|||||++++....+...+.++...... . .....+..+.+.+||++|++.+...+..++..+
T Consensus 6 ~~~~~~~ki~ivG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 85 (218)
T 4DJT_B 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA 85 (218)
T ss_dssp CCCEEEEEEEEECSTTSSHHHHHCBCTTCGGGCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccccceEEEEEECCCCCCHHHHHHHHhcCCCCCccCCccceeeeeeEEEcCCCCEEEEEEEeCCCcchhhhchhhhccCC
Confidence 45567799999999999999999999877654433333221111 1 111122346889999999988877787888899
Q sequence1 81 DVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 159 (184)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
+++++|+|+++..++..... |...+.. .....|+++++||+|+........ .....+.... ...+
T Consensus 86 ~~~i~v~d~s~~~s~~~~~~-~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~------------~~~~~~~~~~-~~~~ 151 (218)
T 4DJT_B 86 SGAILFFDVTSRITCQNLAR-WVKEFQAVVGNEAPIVVCANKIDIKNRQKISK------------KLVMEVLKGK-NYEY 151 (218)
T ss_dssp SEEEEEEETTCHHHHHTHHH-HHHHHHHHHCSSSCEEEEEECTTCC------C------------HHHHHHTTTC-CCEE
T ss_pred cEEEEEEeCCChhhHHHHHH-HHHHHHHHhCCCCcEEEEEechhhcccccCCH------------HHHHHHHHhC-CCEE
Confidence 99999999998766665533 3333322 123589999999999976321100 0000111111 2578
Q sequence1 160 MECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 160 ~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
+++||+++.|+..+|.++.+.+.
T Consensus 152 ~~~Sa~~~~~~~~~~~~l~~~~~ 174 (218)
T 4DJT_B 152 FEISAKTAHNFGLPFLHLARIFT 174 (218)
T ss_dssp EECBTTTTBTTTHHHHHHHHHHH
T ss_pred EEEecCCCCchHHHHHHHHHHHh
Confidence 89999999999999988877653
##### No 15 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2OV2_D Ras-related C3 botulinum toxin substrate; GTPase RAC3, small GTP binding; HET: EDO, GCP; 2.1A {Homo sapiens}
Probab=99.82 E-value=1.4e-24 Score=144.25 Aligned_cols=177 Identities=56% Similarity=0.986 Sum_probs=119.1 Template_Neff=12.800
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
.+..+|+++|.+|+|||+|++++..........++............+....+.+||++|...+...+..++..++++++
T Consensus 2 ~~~~~i~i~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 81 (179)
T 2OV2_D 2 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 81 (179)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcceEEEEECCCCCChhHHHHHHhcCCCCcccCCcceeeeEEEEEECCEEEEEEEEeCCCCcchHhhhhhcCCCCCEEEE
Confidence 45789999999999999999999876554333322222222222333445678899999988887777778889999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184)
|+|.++..++......+...+.......|+++++||.|+...........+.............++.......++.+|++
T Consensus 82 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (179)
T 2OV2_D 82 CFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSAL 161 (179)
T ss_dssp EEETTCHHHHHHCCCCCHHHHHHHCTTCCEEEEEECHHHHSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EeeCCChHHHHHHHHhhhHHHHHHCCCCCEEEEEcCCcccCChhhHHHHHhcCCCCCCHHHHHHHHHHhCCcEEEEccCC
Confidence 99999877676665555555544435689999999999876432222211111111112222233333333678899999
Q sequence1 166 TKDGVREVFEMATRAAL 182 (184)
Q Consensus 166 ~~~~i~~~~~~~~~~~~ 182 (184)
++.|+.++++++.+.++
T Consensus 162 ~~~~i~~~~~~l~~~~~ 178 (179)
T 2OV2_D 162 TQRGLKTVFDEAIRAVL 178 (179)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHh
Confidence 99999999999888765
##### No 16 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3REF_B Rho-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling protein; HET: GDP, SO4; 1.95A {Entamoeba histolytica}
Probab=99.82 E-value=1.6e-24 Score=146.97 Aligned_cols=169 Identities=46% Similarity=0.843 Sum_probs=119.3 Template_Neff=11.800
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
....++|+++|+.++|||+|++++....+.....++...........++....+.+||++|.+.+...+..++..+|+++
T Consensus 20 ~~~~~~i~l~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 99 (194)
T 3REF_B 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCSCCCCEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGGTTCSEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCCCCccceEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhhcCCEEE
Confidence 45678999999999999999999987765433333222222223333344567899999999888777888888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
+|+|+.+..++....+.|...+.......|+++|+||.|+........ .......++...+...++.+|+
T Consensus 100 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~~k~D~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~s~ 169 (194)
T 3REF_B 100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDV----------TKQEGDDLCQKLGCVAYIEASS 169 (194)
T ss_dssp EEEETTCHHHHHHCCCCCHHHHHHHCTTSEEEEEEECGGGCCTTSCCC----------CHHHHHHHHHHHTCSCEEECBT
T ss_pred EEeeCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEhHHcCCcccccC----------CHHHHHHHHHHhCCCcEEEEeC
Confidence 999999887777765556655544335789999999999876321110 0111122233333357889999
Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184)
.++.|+.++|.++...+.+
T Consensus 170 ~~~~~i~~~~~~l~~~~~~ 188 (194)
T 3REF_B 170 VAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp TTTBSHHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999887653
##### No 17 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1GWN_C RHO-RELATED GTP-BINDING PROTEIN RHOE; GTPASE, INACTIVE GTPASE, SIGNAL TRANSDUCTION; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.82 E-value=1.6e-24 Score=148.60 Aligned_cols=180 Identities=50% Similarity=0.934 Sum_probs=121.2 Template_Neff=11.300
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
......+|+++|.+++|||+|++++..........++....+......++....+.+||++|.+.+...+..++..++++
T Consensus 24 ~~~~~~~i~i~G~~~~GKs~l~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 103 (205)
T 1GWN_C 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhhCCCCCccCCCceeEEEEEEEECCEEEEEEEEcCCCCcchhhcccccCCCCCEE
Confidence 34677899999999999999999998665443333333233333333444556788999999887777777778889999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|+++....++......|...+.......|+++|+||.|+...........+.............++...+...++++|
T Consensus 104 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 183 (205)
T 1GWN_C 104 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 183 (205)
T ss_dssp EEEEETTCHHHHHHCCCCCHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEEeCCCHHHHHHHHHHhHHHHHHHCCCCeEEEEEcCccccCChHHHHhhhcCCCCccCHHHHHHHHHHhCCCEEEEee
Confidence 99999998777766545555555443357899999999999764322222111111112223333444444445789999
Q sequence1 164 AKTKDG-VREVFEMATRAALQ 183 (184)
Q Consensus 164 ~~~~~~-i~~~~~~~~~~~~~ 183 (184)
++++.| +.++|..+.+.+++
T Consensus 184 ~~~~~~~i~~~~~~l~~~~~~ 204 (205)
T 1GWN_C 184 ALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHHhc
Confidence 999999 99999998887754
##### No 18 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6HH2_A Ras-related protein Rab-7L1; Rab GTPase, membrane trafficking, SIGNALING; HET: GDP; 1.449A {Homo sapiens}
Probab=99.82 E-value=1.7e-24 Score=145.69 Aligned_cols=166 Identities=27% Similarity=0.457 Sum_probs=110.3 Template_Neff=11.300
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIEV-DGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
.....++|+++|.+++|||||++++....+.....++....+. ..... +.....+.+||++|++.+...+..++..+|
T Consensus 6 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 85 (180)
T 6HH2_A 6 SRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGLERFTSMTRLYYRDAS 85 (180)
T ss_dssp -CEEEEEEEEEESTTSSHHHHHHHHSSTTTCCTTHHHHCSSSEEEEEEEETTEEEEEEEEECGGGGGGCSCCHHHHTTCS
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceEEEEEEEEEEEeCCeEEEEEEEeCCCCHHHHHHHHHHhcCCC
Confidence 4567799999999999999999999876654332222221111 11111 223457889999998888777877888999
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
++++|+|+++..++..... |...+... ....|+++++||.|+....... .....++.....
T Consensus 86 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-------------~~~~~~~~~~~~ 151 (180)
T 6HH2_A 86 AAVIMFDVTNATTFSNSQR-WKQDLDSKLTLPNGEPVPALLLANKSDLSPWAVSR-------------DQIDRFSKENGF 151 (180)
T ss_dssp EEEEEEETTCHHHHHHHHH-HHHHHHHHCBCTTSCBCCEEEEEECTTSSSCSSCH-------------HHHHHHHHHTTC
T ss_pred EEEEEEeCCCHHHHHHHHH-HHHHHHHHcCCCCCCCCCEEEEEecccCCCccCCH-------------HHHHHHHHHcCC
Confidence 9999999998777766533 33333221 2367999999999986421110 111111222223
Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
..++++|+.++.|+.++|.++.+.+++
T Consensus 152 ~~~~~~s~~~~~~i~~~~~~l~~~~~~ 178 (180)
T 6HH2_A 152 TGWTETSVKENKNINEAMRVLIEKMMR 178 (180)
T ss_dssp SEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ccEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 457889999999999999999887653
##### No 19 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3X1Z_A Ras-related protein Rap-1b; SIGNAL TRANSDUCTION, SIGNALING PROTEIN; HET: GNP; 1.25A {Rattus norvegicus}
Probab=99.82 E-value=2.1e-24 Score=142.82 Aligned_cols=164 Identities=30% Similarity=0.493 Sum_probs=114.3 Template_Neff=12.100
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC 86 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (184)
+..+|+++|.+|+|||||++++....+.....++....+......++....+.+||++|+..+...+..+...+|+++++
T Consensus 2 ~~~~i~vvG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ii~v 81 (167)
T 3X1Z_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFAAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECSSCSCGGGGHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCchhcCCCCcceeeEEEEEECCEEEEEEEEeCCCchHHHHHHHHHhhcCCEEEEE
Confidence 46899999999999999999998765544333332222222333344556789999999888877788888899999999
Q sequence1 87 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184)
+++++..++....+.+....... ....|+++++||.|........ ......++.......++++|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ili~~k~D~~~~~~~~------------~~~~~~~~~~~~~~~~~~~s~~ 149 (167)
T 3X1Z_A 82 YSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVG------------KEQGQNLARQWSNCAFLESSAK 149 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSC------------HHHHHHHHHHTTSCEEEECBTT
T ss_pred EeCCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccccccccccC------------HHHHHHHHHHhcCCeEEEeeCC
Confidence 99998777766544444333222 2468999999999987532110 1111112222223678999999
Q sequence1 166 TKDGVREVFEMATRAAL 182 (184)
Q Consensus 166 ~~~~i~~~~~~~~~~~~ 182 (184)
++.|+.++|+++.+.+.
T Consensus 150 ~~~~i~~~~~~l~~~i~ 166 (167)
T 3X1Z_A 150 SKINVNEIFYDLVRQIN 166 (167)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHh
Confidence 99999999999988765
##### No 20 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4U5X_A OsRac1; Small GTPase, Rac, Plant; HET: GOL, GNP; 1.9A {Oryza sativa subsp. japonica}
Probab=99.81 E-value=2.6e-24 Score=143.12 Aligned_cols=175 Identities=47% Similarity=0.875 Sum_probs=119.3 Template_Neff=12.600
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
.+..+|+++|++++|||||++++....+.....++...........++....+.+||++|.+.+...+..++..++++++
T Consensus 3 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (178)
T 4U5X_A 3 TRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGSVVNLGLWDTAGLEDYSRLRPLSYRGADVFIL 82 (178)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHCSCCCSCCCSCCCEEEEEEEETTEEEEEEEECCCCCGGGTTTHHHHHTTCSEEEE
T ss_pred ceeEEEEEECCCCCCceeehhhhccCCCCCCccCCcccceeEEEEeCCeEEEEEEEeCCCCcchhccchhhcCCCCEEEE
Confidence 56789999999999999999999877654433333322223233344455788999999998887777778889999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184)
|+|+.+..++......|...+....+..|+++++||.|+......... ..............++...+...++++|++
T Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (178)
T 4U5X_A 83 SFSLISRASYENVQKKWMPELRRFAPGVPVVLVGTKLDLREDRAYLAD--HPASSIITTEQGEELRKLIGAVAYIECSSK 160 (178)
T ss_dssp EEETTCHHHHHHCCCCCHHHHHHHSTTCCEEEEEECHHHHTCHHHHHT--SCGGGCCCHHHHHHHHHHHTCSEEEECBTT
T ss_pred EeeCCChHHHHHHHHhcHHHHHHhCCCCCEEEEecCccccCChhhhcc--CCcccccCHHHHHHHHHHHCCCEEEEcCCC
Confidence 999998777766645555555444357899999999998764321100 000000111122222333333678999999
Q sequence1 166 TKDGVREVFEMATRAAL 182 (184)
Q Consensus 166 ~~~~i~~~~~~~~~~~~ 182 (184)
++.|+.++|.++.+.++
T Consensus 161 ~~~~i~~~~~~l~~~~~ 177 (178)
T 4U5X_A 161 TQRNIKAVFDTAIKVVL 177 (178)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHh
Confidence 99999999999888765
##### No 21 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2Q3H_A Ras homolog gene family, member; GTPase, Structural Genomics, Structural Genomics; HET: GDP; 1.73A {Homo sapiens}
Probab=99.81 E-value=2.6e-24 Score=146.81 Aligned_cols=180 Identities=46% Similarity=0.840 Sum_probs=114.2 Template_Neff=11.700
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
.....++|+++|..++|||+|++++....+.....++...........++....+.+||++|++.+...+..++..++++
T Consensus 16 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 95 (201)
T 2Q3H_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCCcceeEEEEEECCEEEEEEEEeCCCChhhhhchhHhcCCCCEE
Confidence 34567899999999999999999998766544333322222222233334457889999999988877777788899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|+|+.+..++......+...+....+..|+++++||.|+.........................+........++.+|
T Consensus 96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (201)
T 2Q3H_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECS 175 (201)
T ss_dssp EEEEETTCHHHHHHCCCCCHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEeeCCCHHHHHHHHHccHHHHHHHCCCCCEEEEEeccccccchhHHHhhccCCCcccCHHHHHHHHHHhCCCeEEEcc
Confidence 99999998776666545555555444456899999999998764322111111111111111222222222336788999
Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184)
++++.|+.++|.++.+.+.+
T Consensus 176 ~~~~~~i~~~~~~l~~~~~~ 195 (201)
T 2Q3H_A 176 ALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHhh
Confidence 99999999999998887654
##### No 22 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1M7B_A Rho-related GTP-binding protein RhoE; small GTPase, SIGNALING PROTEIN; HET: GTP; 2.0A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=3.5e-24 Score=144.00 Aligned_cols=180 Identities=50% Similarity=0.934 Sum_probs=120.4 Template_Neff=12.000
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
...+..+|+++|.+++|||+|++++..........+.........+...+....+.+||++|.+.+...+..+...++++
T Consensus 3 ~~~~~~~i~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 82 (184)
T 1M7B_A 3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CcceeeEEEEEcCCCCChHHHHHHHhcCCCCCccCCCceeEEEEEEEECCeEEEEEEEeCCCCcchhccccccCCCCCEE
Confidence 45678999999999999999999998765543333322222233333444567788999999888877777778899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|+++++..++......+...+.......|+++++||.|+.........................++...+...++.+|
T Consensus 83 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
T 1M7B_A 83 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 162 (184)
T ss_dssp EEEEETTCHHHHHHCCCCCHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEeccccccCChHHHHhhhcCCCCccCHHHHHHHHHHhCCCeEEEee
Confidence 99999998777766655566555444457899999999998763221111111111111122223333343334789999
Q sequence1 164 AKTKDG-VREVFEMATRAALQ 183 (184)
Q Consensus 164 ~~~~~~-i~~~~~~~~~~~~~ 183 (184)
++++.| +.+++.++.+.+..
T Consensus 163 ~~~~~~~i~~~~~~l~~~~~~ 183 (184)
T 1M7B_A 163 ALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTTBHHHHHHHHHHHHHHHHT
T ss_pred cCCCCchHHHHHHHHHHHHhc
Confidence 999999 99999998887653
##### No 23 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2GF0_B GTP-binding protein Di-Ras1; DIRAS, GDP/GTP binding, GTP hydrolysis; HET: GDP; 1.9A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=3.5e-24 Score=146.46 Aligned_cols=166 Identities=27% Similarity=0.429 Sum_probs=100.7 Template_Neff=11.100
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
+.....++|+++|.+|+|||||++++....+.....++....+......+.....+.+||++|++.+...+..++..+++
T Consensus 3 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 82 (199)
T 2GF0_B 3 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHA 82 (199)
T ss_dssp -CCCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEET-TEEEEEEEECCGH------HHHHHHCS-E
T ss_pred CCcCCcEEEEEECCCCCCHHHHHHHHhCCCCCcccCCCCcceeEEEEEECCEEEEEEEEcCCCcHHhHHhhHHHhcCCCE
Confidence 34567789999999999999999999876654333332222222222223345678999999998887777778889999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKH--FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
+++|+|+++..++......+..+... .....|+++|+||+|+....... .....++...+ ..++
T Consensus 83 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~-------------~~~~~~~~~~~-~~~~ 148 (199)
T 2GF0_B 83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDT-------------REAQAVAQEWK-CAFM 148 (199)
T ss_dssp EEEEEETT---C----HHHHHTTHHHHSCGGGSCEEEEEECTTCSSCSSCH-------------HHHHHHHHHHT-CEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEeCccCCCCCCCH-------------HHHHHHHHHHC-CCEE
Confidence 99999999887777664433333221 12367899999999986421110 11111111222 5688
Q sequence1 161 ECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
.+|++++.|+.++|.++...+.
T Consensus 149 ~~Sa~~~~~i~~l~~~l~~~~~ 170 (199)
T 2GF0_B 149 ETSAKMNYNVKELFQELLTLET 170 (199)
T ss_dssp ECBTTTTBSHHHHHHHHHHHCS
T ss_pred EeeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999998877653
##### No 24 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2REX_D Plexin-B1, Rho-related GTP-binding protein Rho6; complex, Structural Genomics Consortium, SGC; HET: GNP, UNX; 2.3A {Homo sapiens}
Probab=99.81 E-value=3.6e-24 Score=145.52 Aligned_cols=181 Identities=44% Similarity=0.795 Sum_probs=119.3 Template_Neff=11.900
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
+......+|+++|..++|||+|++.+....+.....++....+.......+....+.+||++|...+...+..++..+|+
T Consensus 5 ~~~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 84 (197)
T 2REX_D 5 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 84 (197)
T ss_dssp CCSEEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGGTTCSE
T ss_pred CCCcceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEeecCCeEEEEEEEECCCCcchhhchHhhcCCCCE
Confidence 34566789999999999999999999866554433333222222233334456788899999988777777788889999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++|+|+++..++......|...+.......|+++++||+|+...........+.........+...++...+...++++
T Consensus 85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (197)
T 2REX_D 85 VLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEG 164 (197)
T ss_dssp EEEEEETTCTTTC--CHHHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEEechhhccCHHHHHHHhhccCCCCCHHHHHHHHHHhCCcEEEEe
Confidence 99999999877776644455544443335789999999999976432111111111111112223334444443348899
Q sequence1 163 SAKTKD-GVREVFEMATRAALQ 183 (184)
Q Consensus 163 s~~~~~-~i~~~~~~~~~~~~~ 183 (184)
|+.++. |+.++|.++.+.+.+
T Consensus 165 s~~~~~~~i~~l~~~i~~~~~~ 186 (197)
T 2REX_D 165 SAFTSEKSIHSIFRTASMLCLN 186 (197)
T ss_dssp CTTTCHHHHHHHHHHHHHHCC-
T ss_pred cCCCChhHHHHHHHHHHHHHhc
Confidence 999999 999999998887643
##### No 25 #####
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>3REG_B Rho-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling protein; HET: GSP; 1.801A {Entamoeba histolytica}
Probab=99.81 E-value=3.8e-24 Score=144.83 Aligned_cols=169 Identities=46% Similarity=0.842 Sum_probs=117.9 Template_Neff=12.100
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
....++|+++|+.|+|||+|++++....+.....++............+....+.+||++|++.+...+..++..+|+++
T Consensus 20 ~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 99 (194)
T 3REG_B 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCcccceEEEeeeCCeEEEEEEEECCCchHhHhhhhhhcCCCcEEE
Confidence 46678999999999999999999987765433333222222222233344567899999999888777877888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
+|+|+.+..++....+.|...+.......|+++|+||.|+......... ......++.......++.+|+
T Consensus 100 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~~k~D~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~s~ 169 (194)
T 3REG_B 100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVT----------KQEGDDLCQKLGCVAYIEASS 169 (194)
T ss_dssp EEEETTCHHHHHHCCCCCHHHHHHHHTTSEEEEEEECGGGCCTTSCCCC----------HHHHHHHHHHHTCSCEEECBT
T ss_pred EEEeCCCcccHHHHHHhhHHHHHHhcCCCcEEEEEechhcCCCCCCccc----------HHHHHHHHHHHCCcEEEEccC
Confidence 9999998777766655556555444457899999999998763221100 011112222333357889999
Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184)
.++.++.++|.++.+.+..
T Consensus 170 ~~~~~i~~~~~~i~~~~~~ 188 (194)
T 3REG_B 170 VAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp TTTBSHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999887753
##### No 26 #####
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>2FN4_A Ras-related protein R-Ras; RRAS, GDP/GTP binding, GTP hydrolysis; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=4.1e-24 Score=143.78 Aligned_cols=167 Identities=30% Similarity=0.451 Sum_probs=114.7 Template_Neff=11.500
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
......+|+++|..++|||||++++....+.....++....+......++....+.+||++|.+.+...+..++..++++
T Consensus 5 ~~~~~~~i~iiG~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~i 84 (181)
T 2FN4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCccEEEEEECCCCCCHHHHHHHHhcCCCcCCCCCCCcccEEEEEEECCEEEEEEEEeCCCChhhHHhHHHHHhhCCEE
Confidence 34567899999999999999999998775544333332222222223334456788999999888877788888899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
++|+++++..++......+....... ....|+++|+||+|+....... ......+.... ...++++
T Consensus 85 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~k~D~~~~~~~~------------~~~~~~~~~~~-~~~~~~~ 151 (181)
T 2FN4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVP------------RSEASAFGASH-HVAYFEA 151 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSC------------HHHHHHHHHHT-TCEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhhcCCCCCeEEEEEechhccccCCCC------------HHHHHHHHHHc-CCeEEEE
Confidence 99999998776666554444443322 2467999999999987632110 00111111111 2568899
Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184)
|++++.|+.+++.++.+.+.+
T Consensus 152 s~~~~~~~~~~~~~l~~~~~~ 172 (181)
T 2FN4_A 152 SAKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHHH
Confidence 999999999999998877653
##### No 27 #####
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>5C2K_A Transforming protein RhoA,Rac GTPase-activating protein; GTPase activation, fusion protein, small; HET: GDP; 1.42A {Homo sapiens}
Probab=99.81 E-value=4.4e-24 Score=161.16 Aligned_cols=180 Identities=97% Similarity=1.484 Sum_probs=123.6 Template_Neff=10.900
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
.....++|+++|.+|+|||||++++....+.....++........+..++....+.+||++|++.+...+..++..+|++
T Consensus 8 ~~~~~~~i~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 87 (415)
T 5C2K_A 8 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 87 (415)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCCEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHhCCCCCCccCCCcCCeeEEEEEECCEEEEEEEEcCCCcHHHHHHHHHHhcCCCEE
Confidence 34567899999999999999999998776544333322222233334445567899999999988888888888899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|+|+++..++......+...........|+++|+||.|+.........................++...+...++++|
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (415)
T 5C2K_A 88 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 167 (415)
T ss_dssp EEEEETTCHHHHHHCCCCCHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEEecccCCCChHhHHHHHHHHhcCCCHHHHHHHHHHhCCCcEEEee
Confidence 99999998877776655566555444346899999999998764322222211111111222222333333336788999
Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184)
+.++.|+.++|+++...+.+
T Consensus 168 a~~~~~i~~~~~~l~~~~~~ 187 (415)
T 5C2K_A 168 AKTKDGVREVFEMATRAALQ 187 (415)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred cCcCcCHHHHHHHHHHHHHH
Confidence 99999999999988877653
##### No 28 #####
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>4YON_B pREX1, Rac1(G12V); Protein binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=4.5e-24 Score=141.97 Aligned_cols=176 Identities=57% Similarity=0.979 Sum_probs=116.7 Template_Neff=12.700
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
.+.++|+++|.+++|||+|++++..........++............+....+.+||++|.+.+...+..++..+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 82 (179)
T 4YON_B 3 MQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 82 (179)
T ss_dssp CCEEEEEEEECGGGCHHHHHHHHHSTTCSCSCCCSCCCCEEEEEEETTEEEEEEEECCTTCTTCTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEEECCCCCCHHHHHHHHHcCCCCCCccCCccceeEEEEEECCEEEEEEEEeCCCCcchhhhhHHHcCCCCEEEE
Confidence 56789999999999999999999876543322222212222222233345678899999988777777777889999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184)
|+|..+..++......+...+.......|+++++||.|+.........................++...+...++++|++
T Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 162 (179)
T 4YON_B 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 162 (179)
T ss_dssp EEETTCHHHHHHCCCCCHHHHHHHCTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECCChHHHHHHHHhhHHHHHHHCCCCCEEEEeecchhcCChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCcEEEcccc
Confidence 99999877666665455555544435689999999999876432211111111111111222223333333578899999
Q sequence1 166 TKDGVREVFEMATRAA 181 (184)
Q Consensus 166 ~~~~i~~~~~~~~~~~ 181 (184)
++.|+.++++++.+.+
T Consensus 163 ~~~~i~~~~~~l~~~~ 178 (179)
T 4YON_B 163 TQRGLKTVFDEAIRAV 178 (179)
T ss_dssp TCTTHHHHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHh
Confidence 9999999999988765
##### No 29 #####
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>1GUA_A RAP1A, C-RAF1, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER; ONCOGENE PROTEIN/KINASE/EFFECTOR PROTEIN GTP-BINDING-PROTEIN, COMPLEX; HET: GNP; 2.0A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=4.8e-24 Score=140.85 Aligned_cols=164 Identities=30% Similarity=0.482 Sum_probs=111.6 Template_Neff=12.300
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC 86 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (184)
+..+|+++|..|+|||||++++..........++...........+.....+.+||++|.+.+...+..++..+++++++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1GUA_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEECCSSCSCCTTHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCccCCccCCCcccceEEEEEECCEEEEEEEEeCCCchhhHHHHHHHHhcCCEEEEE
Confidence 46789999999999999999998765543333332222223333344456789999999888877777788899999999
Q sequence1 87 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184)
+++++..++......+....... ....|+++++||.|+....... ...............++.+|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~~k~d~~~~~~~~------------~~~~~~~~~~~~~~~~~~~s~~ 149 (167)
T 1GUA_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVG------------KEQGQNLARQWCNCAFLESSAK 149 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTCSCCCEEEEEECTTCGGGCCSC------------HHHHHHHHHHTTTCEEEECBTT
T ss_pred EeCCChHHHHHHHHHHHHHHhhCCCCCCcEEEEEecccccccccCC------------HHHHHHHHHHhcCCEEEEeeCC
Confidence 99998766665543333332221 2467999999999997532110 0111111222223578889999
Q sequence1 166 TKDGVREVFEMATRAAL 182 (184)
Q Consensus 166 ~~~~i~~~~~~~~~~~~ 182 (184)
++.|+.++|+++.+.+.
T Consensus 150 ~~~~i~~~~~~l~~~~~ 166 (167)
T 1GUA_A 150 SKINVNEIFYDLVRQIN 166 (167)
T ss_dssp TTBSHHHHHHHHHHHHC
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 99999999999887664
##### No 30 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4GZL_A Ras-related C3 botulinum toxin substrate; Rossmann fold, GTP binding, membrane; HET: GNP; 2.0A {Homo sapiens}
Probab=99.80 E-value=4.9e-24 Score=146.34 Aligned_cols=178 Identities=58% Similarity=0.989 Sum_probs=115.7 Template_Neff=11.000
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
...+.++|+++|.+++|||||++++..........++............+....+.+||++|...+...+..++..+|++
T Consensus 26 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~v 105 (204)
T 4GZL_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcccceeEEEEECCeEEEEEEEeCCCCccchhhhHHhcCCCCEE
Confidence 45677899999999999999999998765543333322222222223334456788999999987777777788899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|++.++..++......+...+....+..|+++++||.|+.....................+...++...+...++++|
T Consensus 106 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4GZL_A 106 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp EEEEETTCHHHHHHCCCCCHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHHCCCCCEEEEeechhhcCChHHHHHHHhCCCCCCCHHHHHHHHHHhCCceEEEEe
Confidence 99999998766665544455444433356899999999998764322221111111111222222333333336789999
Q sequence1 164 AKTKDGVREVFEMATRAA 181 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~ 181 (184)
++++.++.++|+++.+.+
T Consensus 186 ~~~~~~i~~l~~~i~~~~ 203 (204)
T 4GZL_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTTCTTHHHHHHHHHHTT
T ss_pred CCCChhHHHHHHHHHHHh
Confidence 999999999999988765
##### No 31 #####
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>5VCU_A Ras-related c3 botulinum toxin substrate; SSGCID, RAS, botulinum toxin, GTP; HET: GDP; 1.85A {Naegleria fowleri}
Probab=99.80 E-value=5.3e-24 Score=145.75 Aligned_cols=177 Identities=54% Similarity=0.909 Sum_probs=118.1 Template_Neff=12.000
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
....+|+++|.+|+|||+|++++..........++........+...+....+.+||++|++.+...+..++..+|++++
T Consensus 9 ~~~~~~~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (208)
T 5VCU_A 9 MESIKCVVVGDGAVGKTALLIAYSSGCFPEDYVPTVFDNYNKNIPYGDGIVSIALYDTAGQEDYDRLRPLSYPDTDVFLV 88 (208)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHhCCCCchhcCcceeEEEEEeeeCCeEEEEEEEeCCCChhHHhhhhhcCCCCCEEEE
Confidence 34578999999999999999999877654433333222222233333445678999999998887778888889999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184)
|+|++...++......+...+.......|+++|+||.|+.........................++...+...++.+|++
T Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iiv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 168 (208)
T 5VCU_A 89 CFSLENPNSLENCHSKWAEELKHYNPDTPIVLVGTKLDLKKDEEYVKKLKEKKISPVTTEQGQEMKDKIKACGYIECSAK 168 (208)
T ss_dssp EEETTCHHHHHHCCCCCCHHHHHHCTTCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCccCCCHHHHHHHhhcCCCCCCHHHHHHHHHHhCCCeEEEecCC
Confidence 99999877776664455555543334689999999999876432211111111111111222223333333678899999
Q sequence1 166 TKDGVREVFEMATRAAL 182 (184)
Q Consensus 166 ~~~~i~~~~~~~~~~~~ 182 (184)
++.|+.++|.++.+.+.
T Consensus 169 ~~~~i~~l~~~i~~~~~ 185 (208)
T 5VCU_A 169 TMENLTEAFNMAIDIAM 185 (208)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHH
Confidence 99999999998887764
##### No 32 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4RKE_A GH01619p; GTP hydrolysis, hydrolase; HET: 1PE, GNP; 2.0006A {Drosophila melanogaster}
Probab=99.80 E-value=5.5e-24 Score=142.17 Aligned_cols=167 Identities=29% Similarity=0.479 Sum_probs=114.1 Template_Neff=11.900
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
.....++|+++|..++||||+++++...........+.... ........+....+.+||++|...+...+..++..+|+
T Consensus 6 ~~~~~~~i~~vG~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~d~ 85 (176)
T 4RKE_A 6 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGLEAFRSITRSYYRGAAG 85 (176)
T ss_dssp TBSEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCCSCEEEEEEEEETTEEEEEEEEECCCCTTTCCSCCGGGTTCSE
T ss_pred cccceEEEEEEcCCCCCHHHHHHHHcCCCCCCCCccccEEEEEEEEEEECCEEEEEEEEeCCCchHhHHhhHHHhcCCCE
Confidence 44677899999999999999999988765443222111111 11122233445678999999998888888888899999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++|+|+++..++.....++...........|+++++||+|+....... ......++... ..+++++
T Consensus 86 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~k~d~~~~~~~~------------~~~~~~~~~~~-~~~~~~~ 152 (176)
T 4RKE_A 86 ALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDSRREVK------------KEEGEAFAREH-GLVFMET 152 (176)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHSSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHH-TCEEEEE
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHHHCCCCCEEEEEEecccccccccCC------------HHHHHHHHHHc-CCEEEEe
Confidence 9999999987776666443333333223468999999999987532110 11111112222 2578999
Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184)
|++++.++.++|..+++.+..
T Consensus 153 sa~~~~~i~~~~~~l~~~~~~ 173 (176)
T 4RKE_A 153 SARTAANVEEAFINTAKEIYE 173 (176)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999998887653
##### No 33 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>5LDD_C Mon1, Ccz1, Rab small monomeric; heterodimeric GEF protein, endosomal maturation; HET: SO4; 2.496A {Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)}
Probab=99.80 E-value=5.9e-24 Score=146.60 Aligned_cols=168 Identities=26% Similarity=0.459 Sum_probs=108.0 Template_Neff=10.300
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
....++|+++|.+++|||||++++....+.....++....+ ...+...+....+.+||++|+..+...+..++..+|++
T Consensus 7 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~v 86 (207)
T 5LDD_C 7 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSASYKATIGADFLTREVMVDDRQVTMQLWDTAGQERFQSLGVAFYRGADCC 86 (207)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHSCGGGCEEEHHHHSEEEEEEEEEETTEEEEEEEEEECCCGGGSTTHHHHHTTCSEE
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEeCCCCHHHHhhHHHHhcCCCEE
Confidence 45678999999999999999999987765433333222221 12223334456789999999888877788888899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKH----FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 159 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
++|+|+++..++......+...... .....|+++|+||.|+........ ......++.......+
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 155 (207)
T 5LDD_C 87 VLVFDVNNAKSFDALDSWRDEFLIQASPRDPENFPFVVLGIKIDVEESKRVIS-----------TKRAQTFCQSKGGIPY 155 (207)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCSSGGGCCEEEEEEEC-----CCSSC-----------HHHHHHHHHHTTCCCE
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecccCCcccCCCC-----------HHHHHHHHHHhCCCCE
Confidence 9999999877666553333322211 123689999999999875321100 0011111222223568
Q sequence1 160 MECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 160 ~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
+++|++++.|+.++|.++...+.+
T Consensus 156 ~~~S~~~~~~i~~~~~~l~~~~~~ 179 (207)
T 5LDD_C 156 FETSAKEAINVEEAFQVIARNALM 179 (207)
T ss_dssp EEEECC-CTTHHHHHHHHHHHHHH
T ss_pred EEccCCCCCCHHHHHHHHHHHHHh
Confidence 899999999999999998877653
##### No 34 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>5YOZ_A Rab5a; Rab, GTPase, early endocytosis, GTP; NMR {Leishmania donovani}
Probab=99.80 E-value=6.1e-24 Score=141.95 Aligned_cols=166 Identities=26% Similarity=0.443 Sum_probs=113.1 Template_Neff=12.000
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
+......+|+++|..++|||||++++..........++....+ ......++....+.+||++|...+...+..++..++
T Consensus 10 ~~~~~~~~i~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 89 (177)
T 5YOZ_A 10 LMEATSAKIVMLGESGAGKSSIALRFTRNEFLANQETTIGAAFLSKTVMIDGRALKYEIWDTAGLERFRSLAPIYYRGAS 89 (177)
T ss_dssp CCSCEEEEEEEECCTTTTHHHHHHHHHTSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECTTCSSSTHHHHTTSSCS
T ss_pred ccccceeEEEEECCCCCCHHHHHHHHcCCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCC
Confidence 3456778999999999999999999987654332222211111 222233344567899999999888777888888999
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
++++++|+.+...+......+...........|+++++||.|+....... ......++.......+++
T Consensus 90 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~~k~d~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 157 (177)
T 5YOZ_A 90 GALVVYDITNSESLKKAQTWIKELRANADPSLIIVLVGNKKDLGSLRQVS------------FEDGQRLAAEEQLAAFYE 157 (177)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGTTTCSSC------------HHHHHHHHHHTTCCEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCCccccceec------------HHHHHHHHHHcCCceeEE
Confidence 99999999987666665444444333333467899999999997632110 111112222223357899
Q sequence1 162 CSAKTKDGVREVFEMATRA 180 (184)
Q Consensus 162 ~s~~~~~~i~~~~~~~~~~ 180 (184)
+|+.++.++.++|.++.+.
T Consensus 158 ~s~~~~~~i~~~~~~l~~~ 176 (177)
T 5YOZ_A 158 ASAKDNNNVEQVFLDLAAK 176 (177)
T ss_dssp ECGGGTTTHHHHHHHHHHH
T ss_pred eecCCCCCHHHHHHHHHhh
Confidence 9999999999999988765
##### No 35 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2V55_D RHO-ASSOCIATED PROTEIN KINASE 1 (E.C.2.7.11.1); SERINE/THREONINE-PROTEIN KINASE, RHOE, KINASE, ROCK-I; HET: GTP, ANP; 3.705A {HOMO SAPIENS}
Probab=99.80 E-value=6.3e-24 Score=144.84 Aligned_cols=179 Identities=50% Similarity=0.938 Sum_probs=121.9 Template_Neff=11.700
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
.....+++++|.+++|||+|++++....+.....++....+.......+....+.+||++|.+.+...+..++..+|+++
T Consensus 20 ~~~~~~i~l~G~~~~GKs~li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 99 (200)
T 2V55_D 20 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 99 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCCCEECCEEEEEETTEEEEEEEEEECCCGGGTTTGGGSCTTCSEEE
T ss_pred CCccEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCCCCceeEEEEEECCEEEEEEEEeCCCChhhHHhHHHHccCCCEEE
Confidence 45678999999999999999999987655443333332333333334445677889999998877777777778899999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
+|+|+.+..++......+...+....+..|+++|+||.|+.........................++...+...++++|+
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 179 (200)
T 2V55_D 100 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 179 (200)
T ss_dssp EEEETTCGGGTTHHHHTHHHHHHTTSCSSEECEEEECGGGGGCHHHHHTTGGGTCCCCCHHHHHHHHHHHTCSCEEECCS
T ss_pred EEeeCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEehhhcCCcccchHHHhhhhhccCCHHHHHHHHHHhCCeeEEEeec
Confidence 99999987777666555665554443568999999999987632211111111111112222333344444457899999
Q sequence1 165 KTKDG-VREVFEMATRAALQ 183 (184)
Q Consensus 165 ~~~~~-i~~~~~~~~~~~~~ 183 (184)
+++.| +.++|..+.+.++.
T Consensus 180 ~~~~~~i~~~~~~l~~~~~~ 199 (200)
T 2V55_D 180 LQSENSVRDIFHVATLACVN 199 (200)
T ss_dssp SSCTHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 99999 99999999887754
##### No 36 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3B13_B Dedicator of cytokinesis protein 2; protein-ptotein complex, lymphocyte chemotaxis, signal; 3.006A {Homo sapiens}
Probab=99.80 E-value=7.6e-24 Score=141.75 Aligned_cols=178 Identities=57% Similarity=0.984 Sum_probs=116.5 Template_Neff=12.500
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
.....++|+++|.+++|||+|++++..........++............+....+.+||++|.+.+...+..+...++++
T Consensus 6 ~~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 85 (184)
T 3B13_B 6 SGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 85 (184)
T ss_dssp --CEEEEEEEEECSTTCHHHHHHHHHTTCCTTCCCCCSSCCEEEEEECSSCEEEEEEEECCCSGGGTTTGGGGCTTCSEE
T ss_pred cccceEEEEEECCCCCChHHHHHHHhcCCCCCCccCcceeeeEEEEEECCEEEEEEEEeCCCCcchHHhhhhhCCCCCEE
Confidence 34668899999999999999999988765543333222222222223334556788999999888777777788889999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|++.+...++......+...+.......|+++++||.|+.........................++.......++.+|
T Consensus 86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 165 (184)
T 3B13_B 86 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 165 (184)
T ss_dssp EEEEETTCHHHHHHCCCCCHHHHHHHCSSSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEeeCCChHHHHHHHHhchHHHHHHCCCCCEEEEEcCcccCCChHHHHHHHHcCCCCCCHHHHHHHHHHhCCceEEEee
Confidence 99999998776666544455444433346899999999998764322111111111111112222233333335688999
Q sequence1 164 AKTKDGVREVFEMATRAA 181 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~ 181 (184)
+.++.|+.++++++.+.+
T Consensus 166 ~~~~~~i~~~~~~i~~~~ 183 (184)
T 3B13_B 166 ALTQRGLKTVFDEAIRAV 183 (184)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHh
Confidence 999999999999887765
##### No 37 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>5UB8_A Likely rab family GTP-binding protein; G-PROTEIN, RAB, GDP, P-LOOP, GTPASE; HET: GDP; 2.35A {Candida albicans (strain SC5314 / ATCC MYA-2876)}
Probab=99.80 E-value=8.2e-24 Score=147.32 Aligned_cols=164 Identities=29% Similarity=0.412 Sum_probs=109.7 Template_Neff=10.500
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
....+|+++|+.++|||+|++++....+.....++....+ ...+..++....+.+||++|+..+...+..++..+++++
T Consensus 13 ~~~~~i~v~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 92 (222)
T 5UB8_A 13 EYLYKIVLIGDSGVGKSNLLSRFTRDEFNLESRSTIGVEFATRTLEIDGKRVKAQIWDTAGQERYRAITSAYYRGAVGAL 92 (222)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHSCCCCCC-----CCCEEEEEEEETTEEEEEEEECCCSGGGTSCCCHHHHTTCSEEE
T ss_pred cceEEEEEECCCCCCHHHHHHHHcCCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCcHHhHHhhHHHcCCCcEEE
Confidence 4568999999999999999999987665433322222111 122233444567889999998888777777788899999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
+|+|+++..++..+..++..+........|+++|+||.|+...... ...++..++...+ ..++++||
T Consensus 93 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~vvlvgnK~D~~~~~~v------------~~~~~~~~~~~~~-~~~~e~sa 159 (222)
T 5UB8_A 93 IVYDIAKTESYESVSRWLKELKEHADANIIIELVGNKSDLDHLRAV------------PTEEAKNFAMENN-LLFTEASA 159 (222)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS------------CHHHHHHHHHHTT-CEEEECBT
T ss_pred EEecCCCChhHHHHHHHHHHHHHHCCCCCEEEEEEechhhhhccCC------------CHHHHHHHHHHCC-CEEEEeeC
Confidence 9999998777776644333332222236789999999998542211 1111222222222 56889999
Q sequence1 165 KTKDGVREVFEMATRAAL 182 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~ 182 (184)
.++.++.++|.++...+.
T Consensus 160 ~~~~~v~~~f~~l~~~~~ 177 (222)
T 5UB8_A 160 LSSDNVDLSFHQLLKNIY 177 (222)
T ss_dssp TTTBTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999988877654
##### No 38 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>5DIS_B Exportin-1, GTP-binding nuclear protein Ran; FG-repeats, Nucleoporin, Nup214, Exportin, transport; HET: GTP, GLC, PRO; 2.85A {Homo sapiens}
Probab=99.80 E-value=8.3e-24 Score=141.46 Aligned_cols=161 Identities=27% Similarity=0.481 Sum_probs=109.1 Template_Neff=11.100
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
..++|+++|..++|||||++++..........++....+ ......+.....+.+||++|++.+...+..++..++++++
T Consensus 2 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 81 (172)
T 5DIS_B 2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAII 81 (172)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTGGGGGTTCCEEEE
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcccccccceeEEEEEEEeCCceEEEEEEeCCCchhhhhhchhhccCCCEEEE
Confidence 467999999999999999999876654332222211111 1111222345678999999988777777777889999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184)
|+|+++..++.....++..... .....|+++++||.|+........ ...+... ....++++|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~i~v~nK~Dl~~~~~~~~--------------~~~~~~~-~~~~~~~~Sa~ 145 (172)
T 5DIS_B 82 MFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKVKAK--------------SIVFHRK-KNLQYYDISAK 145 (172)
T ss_dssp EEETTCHHHHHTHHHHHHHHHH-HCSSCCEEEEEECTTSSSCSSCGG--------------GCCHHHH-HTCEEEECCTT
T ss_pred EEeCCCHHHHhcHHHHHHHHHH-HcCCCCEEEEEechhhcccccchh--------------HHHHHHH-cCCcEEEccCC
Confidence 9999987777666444333322 224689999999999975321100 0001111 22578899999
Q sequence1 166 TKDGVREVFEMATRAALQ 183 (184)
Q Consensus 166 ~~~~i~~~~~~~~~~~~~ 183 (184)
++.|+.++|+++.+.+..
T Consensus 146 ~~~~i~~~f~~l~~~~~~ 163 (172)
T 5DIS_B 146 SNYNFEKPFLWLARKLIG 163 (172)
T ss_dssp TCTTCSHHHHHHHHHHHC
T ss_pred cCCChHHHHHHHHHHHhc
Confidence 999999999999887754
##### No 39 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6P0I_B Ras-related protein Ral-A; Ral GTPase, RalA, covalent inhibitor; HET: NL7, GOL, GDP, EDO; 1.18A {Homo sapiens}
Probab=99.80 E-value=8.5e-24 Score=143.12 Aligned_cols=167 Identities=32% Similarity=0.480 Sum_probs=112.6 Template_Neff=11.100
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
......+|+++|.+++|||||++++..........++.................+.+||++|...+...+..++..+|++
T Consensus 10 ~~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (186)
T 6P0I_B 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (186)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCCCCHHHHHHHHHHCSEE
T ss_pred CCCccEEEEEECCCCCCHHHHHHHHhcCCCcccCCCCcceeEEEEEEECCEEEEEEEEeCCCccchHHHHHHhhccCCEE
Confidence 45667899999999999999999998665443322222222222223334456789999999988888888888899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
++|+++.+..++......+...... .....|+++++||+|+....... ........... ...++.+
T Consensus 90 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nk~D~~~~~~~~------------~~~~~~~~~~~-~~~~~~~ 156 (186)
T 6P0I_B 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS------------VEEAKNRAEQW-NVNYVET 156 (186)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTSSEEEEEECTTCGGGCCSC------------HHHHHHHHHHH-TCEEEEE
T ss_pred EEEEeCCChHHHHHHHHHHHHHHhhccCCCCcEEEEEEcccCCCcccCC------------HHHHHHHHHHh-CCEEEEE
Confidence 9999999876665543333333221 12368999999999987532110 00011111111 2568899
Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184)
|++++.|+.++|+++.+.+.+
T Consensus 157 Sa~~~~~i~~~~~~l~~~~~~ 177 (186)
T 6P0I_B 157 SAKTRANVDKVFFDLMREIRA 177 (186)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred ecCCCcCHHHHHHHHHHHHHH
Confidence 999999999999999887754
##### No 40 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1Z0F_A RAB14, member RAS oncogene family; Rab GTPase, Rab14, Vesicular trafficking; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=9.1e-24 Score=141.56 Aligned_cols=167 Identities=29% Similarity=0.443 Sum_probs=113.7 Template_Neff=11.800
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
......+|+++|..++|||+|++++....+.....++....+ ............+.+||++|++.+...+..++..+++
T Consensus 11 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 90 (179)
T 1Z0F_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred cccCeEEEEEEcCCCCCHHHHHHHHhCCCccCCCCCceeEEEEEEEEEECCeEEEEEEEeCCCChhhHHhcHHHhCCCCE
Confidence 346678999999999999999999987765433322221111 1122233345678999999998888888888889999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++|+|+++..++......+...........|+++++||.|+....... .......+... ...++++
T Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~~k~d~~~~~~~~------------~~~~~~~~~~~-~~~~~~~ 157 (179)
T 1Z0F_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT------------YEEAKQFAEEN-GLLFLEA 157 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHT-TCEEEEC
T ss_pred EEEEEcCCCHHHHHhHHHHHHHHHHhCCCCCEEEEEEehhhchhcCCCC------------HHHHHHHHHHc-CCEEEEe
Confidence 9999999987666655443333332223468999999999986532110 00111111222 2568899
Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184)
|+.++.|+.++|.++++.+++
T Consensus 158 S~~~~~~i~~~~~~l~~~~~~ 178 (179)
T 1Z0F_A 158 SAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp CTTTCTTHHHHHHHHHHHHC-
T ss_pred eCCCCCCHHHHHHHHHHHHHc
Confidence 999999999999999887764
##### No 41 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1MH1_A RAC1, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER; GTP-BINDING, GTPASE, SMALL G-PROTEIN, RHO; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=9.7e-24 Score=141.05 Aligned_cols=178 Identities=58% Similarity=1.002 Sum_probs=118.7 Template_Neff=12.800
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
...++|+++|..++|||||++++..........++...........++....+.+||++|.+.+...+..++..++++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (186)
T 1MH1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCCcccceEEEEEECCEEEEEEEEeCCCCcchHhHHHHhcCCCCEEEE
Confidence 46789999999999999999999876554333322222222222333445678899999988887777778889999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184)
|+++++..++......+...+.......|+++++||.|+.........................++...+...++.+|++
T Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 162 (186)
T 1MH1_A 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 162 (186)
T ss_dssp EEETTCHHHHHHCCCCCHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEechhhcCChHHHHHHHhCCCCCCCHHHHHHHHHHhCCCeEEEeeCC
Confidence 99999877666654455555544434689999999999876432211111111111112222223333333678899999
Q sequence1 166 TKDGVREVFEMATRAALQ 183 (184)
Q Consensus 166 ~~~~i~~~~~~~~~~~~~ 183 (184)
++.|+.+++.++.+.+..
T Consensus 163 ~~~~i~~~~~~l~~~~~~ 180 (186)
T 1MH1_A 163 TQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TCTTHHHHHHHHHHHHSC
T ss_pred CCcCHHHHHHHHHHHHhC
Confidence 999999999998877643
##### No 42 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2GF0_C GTP-binding protein Di-Ras1; DIRAS, GDP/GTP binding, GTP hydrolysis; HET: GDP; 1.9A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=1.2e-23 Score=143.90 Aligned_cols=166 Identities=28% Similarity=0.437 Sum_probs=109.4 Template_Neff=11.000
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
+.....++|+++|.+++|||||++++....+.....++....+............+.+||++|++.+...+..++..+++
T Consensus 3 ~~~~~~~~I~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 82 (199)
T 2GF0_C 3 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHA 82 (199)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHCCCCSSCCCCCCCEEEEEEEETTEEEEEEEEECCCSSCCHHHHHHHHHHCSE
T ss_pred CccCCcEEEEEECCCCCCHHHHHHHHhcCCCCcccCCCccceEEEEEEeCCEEEEEEEEeCCCCCcchHHHHHhcccCCE
Confidence 44567799999999999999999999876654433332222222222223345678899999988887777777889999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKH--FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
+++|+|+++..++......+...... .....|+++|+||.|+........ ....++.... ..++
T Consensus 83 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pvilv~nK~D~~~~~~~~~-------------~~~~~~~~~~-~~~~ 148 (199)
T 2GF0_C 83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTR-------------EAQAVAQEWK-CAFM 148 (199)
T ss_dssp EEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHH-------------HHHHHHHHHT-CEEE
T ss_pred EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcccCCCCHH-------------HHHHHHHHhC-CeEE
Confidence 99999999877776654433333221 123579999999999864211100 1111111222 5688
Q sequence1 161 ECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
++|++.+.|+.++|.++.....
T Consensus 149 ~~s~~~~~~i~~l~~~l~~~~~ 170 (199)
T 2GF0_C 149 ETSAKMNYNVKELFQELLTLET 170 (199)
T ss_dssp ECBTTTTBSHHHHHHHHHHHCS
T ss_pred EeccCcCCCHHHHHHHHHHHHH
Confidence 9999999999999988876553
##### No 43 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3BWD_D Rac-like GTP-binding protein ARAC6; G domain, GTP-binding, Lipoprotein, Membrane; HET: GDP; 1.53A {Arabidopsis thaliana}
Probab=99.79 E-value=1.3e-23 Score=140.78 Aligned_cols=179 Identities=49% Similarity=0.871 Sum_probs=110.6 Template_Neff=12.200
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
+......+|+++|.+++|||+|++++....+.....++............+....+.+||++|...+...+..++..+++
T Consensus 3 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 82 (182)
T 3BWD_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred ccccceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCCceeeeEEEEEECCeEEEEEEEeCCCchhhHhchhhhcCCCCE
Confidence 45567899999999999999999999876654333332222222233333445678999999988777777777888999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++|+|+.+..++......+...+.......|+++++||.|+......... ..............++...+...++++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~v~~k~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (182)
T 3BWD_D 83 FILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFID--HPGAVPITTVQGEELKKLIGAPAYIEC 160 (182)
T ss_dssp EEEEEETTCHHHHHHCCCCCHHHHHHHCTTCCEEEEEECHHHHTCHHHHHH--C--CCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEeeCCCHHHHHHHHHhhHHHHHHHCCCCCEEEEEeCcccCCCcccccc--CCCCCcccHHHHHHHHHHHCCCeEEEc
Confidence 999999998777766644555555443346899999999998764321100 000000111222223333333568899
Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184)
|++++.|+.++|+++.+.+++
T Consensus 161 S~~~~~~i~~~~~~l~~~~~~ 181 (182)
T 3BWD_D 161 SSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp CTTTCTTHHHHHHHHHHHHSC
T ss_pred cCCCcccHHHHHHHHHHHHhC
Confidence 999999999999999988764
##### No 44 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4LHW_B Ras-related protein Rab-8A; Small GTPase, PROTEIN TRANSPORT; HET: GNP; 1.55A {Homo sapiens}
Probab=99.79 E-value=1.3e-23 Score=140.55 Aligned_cols=166 Identities=30% Similarity=0.514 Sum_probs=112.2 Template_Neff=11.400
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
..+.++|+++|..++|||+|++++..........++..... ...+..+.....+.+||++|+..+...+..++..++++
T Consensus 3 ~~~~~~i~~~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 82 (174)
T 4LHW_B 3 HDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 82 (174)
T ss_dssp SCEEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHTSTTCSEE
T ss_pred cceeEEEEEECCCCCCHHHHHHHHccCCCCcCCCceeEEEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCcEE
Confidence 35678999999999999999999886654332222211111 11222223346789999999988887788888899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|+|+++..++......+...........|+++++||.|+....... ......++...+ +.++++|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s 149 (174)
T 4LHW_B 83 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVS------------KERGEKLALDYG-IKFMETS 149 (174)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHHT-CEEEECB
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHCCCCCeEEEEEeccccCCcccCC------------HHHHHHHHHHhC-CeEEEee
Confidence 999999987777666444444333223467899999999986532110 011111122222 4678899
Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184)
++++.++.++|.++.+.+..
T Consensus 150 ~~~~~~i~~~~~~l~~~~~~ 169 (174)
T 4LHW_B 150 AKANINVENAFFTLARDIKA 169 (174)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887753
##### No 45 #####
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>2J1L_A RHO-RELATED GTP-BINDING PROTEIN RHOD (E.C.3.6.5.2); GTPASE, MEMBRANE, GTP-BINDING, PRENYLATION, HYDROLASE; HET: GDP; 2.5A {HOMO SAPIENS}
Probab=99.79 E-value=1.4e-23 Score=144.89 Aligned_cols=179 Identities=51% Similarity=0.957 Sum_probs=104.6 Template_Neff=11.400
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
....++|+++|.+++|||+|++++..........+.............+....+.+||++|.+.+...+..++..+++++
T Consensus 31 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 110 (214)
T 2J1L_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred CceEEEEEEEcCCCCCHHHHHHHHhcCCCCcccCCCcceeEEEEEeECCEEEEEEEEeCCCCcchHhhhhhhCCCCcEEE
Confidence 45678999999999999999999986654332222221222222233344567899999998888777777888899999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
+|+|..+..++......+...+.......|+++++||.|+.........................++...+...++++|+
T Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 190 (214)
T 2J1L_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA 190 (214)
T ss_dssp EEEETTCHHHHHHCCCCCHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred EEeeCCChHhHHHHHHccHHHHHHHCCCCCEEEEEechhhcCCHHHHHHHHhCCCCccCHHHHHHHHHHhCCcEEEEecC
Confidence 99999987777666555555554444578999999999987654322222111111111222223333333367899999
Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184)
+++.++.+++.++.+.+.+
T Consensus 191 ~~~~~i~~l~~~l~~~~~~ 209 (214)
T 2J1L_A 191 RLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHh
Confidence 9999999999999887754
##### No 46 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2J0V_B RAC-LIKE GTP-BINDING PROTEIN ARAC7; NUCLEOTIDE-BINDING PROTEIN, ROP9, ATRAC7, MEMBRANE; HET: GDP; 1.78A {ARABIDOPSIS THALIANA}
Probab=99.79 E-value=1.4e-23 Score=144.32 Aligned_cols=177 Identities=48% Similarity=0.878 Sum_probs=120.6 Template_Neff=11.800
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
+...+.++|+++|.+++|||||++++..........++............+....+.+||++|.+.+...+..++..+|+
T Consensus 4 ~~~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 83 (212)
T 2J0V_B 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI 83 (212)
T ss_dssp CCEEEEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEEETTEEEEEEEECCCCCSCCSSCCCGGGTTCSE
T ss_pred ccccceEEEEEECCCCCCcHHHHHHHhcCCCCCCCCCCcccccEEEEEECCeEEEEEEEeCCCCcchhhcchhhcCCCCE
Confidence 45677899999999999999999999876654433332222222222333445678999999988887777778889999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++|+|+.+..++......|...+.......|+++|+||.|+...........+ .........++...+...++++
T Consensus 84 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 159 (212)
T 2J0V_B 84 FVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTN----VITSTQGEELRKQIGAAAYIEC 159 (212)
T ss_dssp EEEEEETTCHHHHHHCCCCCHHHHHHHSTTCCEEEEEECHHHHTCHHHHHTTCS----CCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEeeCCCHHHHHHHHHHhHHHHHHHCCCCCEEEEEeccccCCCCccccccCc----eecHHHHHHHHHHhCCcEEEEc
Confidence 999999998777766545555555443346899999999998764321110000 0111222233333333568899
Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184)
|+.++.++.++|.++.+.++.
T Consensus 160 s~~~~~~v~~~~~~l~~~~~~ 180 (212)
T 2J0V_B 160 SSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp CTTTCTTHHHHHHHHHHHHHS
T ss_pred CCCCCccHHHHHHHHHHHHhC
Confidence 999999999999998877653
##### No 47 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3RAP_R G PROTEIN RAP2A; G PROTEIN, RAS, GTPASE, RAP2; HET: GTP; 2.2A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=1.5e-23 Score=138.39 Aligned_cols=165 Identities=33% Similarity=0.495 Sum_probs=111.6 Template_Neff=12.400
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC 86 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (184)
+.++|+++|.+|+|||||++++..........++.................+.+||++|.+.+...+..++..++++++|
T Consensus 2 ~~~~i~v~G~~~~GKstl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 3RAP_R 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCSCEEEEEEEEETTEEEEEEEEECCCSSTTGGGHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCcccccCCChhheEEEEEEeCCeeEEEEEEECCCChhhHHHHHHHhhcCCEEEEE
Confidence 46899999999999999999888665433222222122222223334456789999999988877777788899999999
Q sequence1 87 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184)
++..++.++......+....... ....|+++++||.|+....... ......+....+ ..++.+|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s~~ 148 (167)
T 3RAP_R 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVS------------SSEGRALAEEWG-CPFMETSAK 148 (167)
T ss_dssp EETTCHHHHHHHTTHHHHHHHHHCCSCCCEEEEEECGGGGGGCCSC------------HHHHHHHHHHHT-SCEEEECTT
T ss_pred EeCCCHHHHHhHHHHHHHHHHhcccCCCCEEEEEeccCCccccccC------------HHHHHHHHHHHC-CCEEEccCC
Confidence 99998766665544333333221 1367899999999987532110 011111111222 568899999
Q sequence1 166 TKDGVREVFEMATRAALQA 184 (184)
Q Consensus 166 ~~~~i~~~~~~~~~~~~~~ 184 (184)
++.++.++++++.+.+..+
T Consensus 149 ~~~~i~~~~~~l~~~i~~~ 167 (167)
T 3RAP_R 149 SKTMVDELFAEIVRQMNYA 167 (167)
T ss_dssp CHHHHHHHHHHHHHHHHCC
T ss_pred CchhHHHHHHHHHHHHhcC
Confidence 9999999999999887653
##### No 48 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2KE5_A Ras-related protein Ral-B; Ral, Cancer, Signalling, G protein; HET: MG, GNP; NMR {Homo sapiens}
Probab=99.79 E-value=1.5e-23 Score=140.01 Aligned_cols=164 Identities=33% Similarity=0.510 Sum_probs=112.1 Template_Neff=11.700
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC 86 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (184)
+..+|+++|++++|||||++++....+.....++....+......+.....+.+||++|...+...+..+...+|+++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (174)
T 2KE5_A 2 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLV 81 (174)
T ss_dssp CEEEEEEEESSSSCHHHHHHHHHHSCCCCCCCCCSSCCEEEEEECSSCEEEEEEEECCCTTSSSSHHHHHHHTCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEECCEEEEEEEEeCCCCcchHHHHHHHhccCCEEEEE
Confidence 35789999999999999999998766544333332222333333444456889999999988877777788899999999
Q sequence1 87 FSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
+++++..++......+....... ....|+++++||+|+....... ...........+ +.++.+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~~sa 148 (174)
T 2KE5_A 82 FSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVP------------VEEARSKAEEWG-VQYVETSA 148 (174)
T ss_dssp EESSCHHHHHHHHHHHHHHHHHTSSCSCCCEEEEEECTTCTTSCCSC------------HHHHHHHHHTTT-CCEEECCT
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEeCCCcccccCCC------------HHHHHHHHHHhC-CCEEEEec
Confidence 99998776666544333333211 2368999999999987632110 011111112222 56889999
Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184)
.++.++.++|+++.+.+.+
T Consensus 149 ~~~~~i~~~~~~i~~~~~~ 167 (174)
T 2KE5_A 149 KTRANVDKVFFDLMREIRT 167 (174)
T ss_dssp TTTSSHHHHHHHHHHHCCC
T ss_pred CCCcCHHHHHHHHHHHHHh
Confidence 9999999999998887643
##### No 49 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6FF8_A Ras-related protein Rab-32; small GTPase, Rab, GTP, vesicle; HET: GTP; 2.13A {Homo sapiens}
Probab=99.79 E-value=1.8e-23 Score=140.71 Aligned_cols=169 Identities=22% Similarity=0.349 Sum_probs=109.9 Template_Neff=11.400
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDG-KQVELALWDTAGLEDYDRLRPLSYPDT 80 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~-~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~ 80 (184)
......++|+++|++++|||||++++....+.....++....+.. ...... ....+.+||++|++.+...+..++..+
T Consensus 3 ~~~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 82 (181)
T 6FF8_A 3 ETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGLERFGNMTRVYYKEA 82 (181)
T ss_dssp CCEEEEEEEEEEESTTSSHHHHHHHHHHCCCCSSCCCCCSEEEEEEEEEEETTEEEEEEEEEECGGGGGSSCHHHHHTTC
T ss_pred hccceeEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCceEEEEEEEEEEecCCcEEEEEEEcCCCCHHHHHHHHHHhcCC
Confidence 345677899999999999999999998775543333322222111 111111 235788999999988888888888899
Q sequence1 81 DVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
|++++|+|+++..++......+....... ....|+++++||.|+....... ......++...+.
T Consensus 83 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~nk~D~~~~~~~~------------~~~~~~~~~~~~~ 150 (181)
T 6FF8_A 83 VGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLANKCDQNKDSSQS------------PSQVDQFCKEHGF 150 (181)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCBCTTSSBCCEEEEEECTTC----CCC------------HHHHHHHHHHHTC
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEecccCccccCCC------------HHHHHHHHHHhCC
Confidence 99999999998766655433332222111 1257899999999987532110 0111112222223
Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
..++++|+.++.|+.++|+++...+.+
T Consensus 151 ~~~~~~s~~~~~~i~~~~~~l~~~~~~ 177 (181)
T 6FF8_A 151 AGWFETSAKDNINIEEAARFLVEKILV 177 (181)
T ss_dssp SEEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 568899999999999999999887653
##### No 50 #####
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Move to pairwise alignment
View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1D5C_A RAB6 GTPASE; G-PROTEIN, GTPASE, RAB, RAB6, VESICULAR; HET: MSE, GDP; 2.3A {Plasmodium falciparum} SCOP: c.37.1.8
Probab=99.79 E-value=1.9e-23 Score=137.73 Aligned_cols=160 Identities=29% Similarity=0.403 Sum_probs=107.8 Template_Neff=12.000
Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC 86 (184)
Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (184)
+.+++++|++++|||+|++++..........++.... ........+....+.+||++|+..+...+..++..++++++|
T Consensus 1 ~~~i~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 80 (162)
T 1D5C_A 1 KYKLVFLGEQAVGKTSIITRFMYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVV 80 (162)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCCCEEEEEEEEETTEEEEEEEEECCCSGGGGGGHHHHHTTCSEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHhhCCCCCCccceeeeEEEEEEEEeCCeEEEEEEEeCCCcHHHHHhchhhcccCCEEEEE
Confidence 3689999999999999999998765433222221111 111222233446788999999987777788888899999999
Q sequence1 87 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 166 (184)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 166 (184)
+|+++..++......+...........|+++++||+|+....... ........... ...++.+|+.+
T Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~k~D~~~~~~~~------------~~~~~~~~~~~-~~~~~~~s~~~ 147 (162)
T 1D5C_A 81 YDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVT------------YEEGMQKAQEY-NTMFHETSAKA 147 (162)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSC------------HHHHHHHHHHT-TCEEEECBTTT
T ss_pred EeCCChHHHHHHHHHHHHHHHHcCCCcEEEEEEeCcccchhccCC------------HHHHHHHHHHh-CCeEEEcccCC
Confidence 999987666665444444443323468999999999996532110 01111111122 25688999999
Q sequence1 167 KDGVREVFEMATRA 180 (184)
Q Consensus 167 ~~~i~~~~~~~~~~ 180 (184)
+.++.++|+++.+.
T Consensus 148 ~~~i~~~~~~l~~~ 161 (162)
T 1D5C_A 148 GHNIKVLFKKTASK 161 (162)
T ss_dssp TBSCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHhc
Confidence 99999999887654
##### No 51 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6L6O_A Rab5a; Intracellular trafficking, GTPase, ENDOCYTOSIS; HET: GDP; 1.8A {Leishmania donovani}
Probab=99.79 E-value=2.1e-23 Score=139.15 Aligned_cols=165 Identities=26% Similarity=0.440 Sum_probs=110.5 Template_Neff=12.200
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
......+|+++|.+++|||||++++..........++....+ .......+....+.+||++|...+...+..++..+++
T Consensus 11 ~~~~~~~v~i~G~~~sGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 90 (177)
T 6L6O_A 11 MEATSAKIVMLGESGAGKSSIALRFTRNEFLANQETTIGAAFLSKTVMIDGRALKYEIWDTAGLERFRSLAPIYYRGASG 90 (177)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCTTTSCSEEEEEEECSSSEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred cccceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCeeeEEeEEEEEEECCEEEEEEEEECCCcHHHHhhhHHHccCCCE
Confidence 356778999999999999999999986654332222211111 1122233445678999999998887778788889999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++|+|+.+...+......+...........|+++++||.|+....... ......++.......++++
T Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~k~d~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 158 (177)
T 6L6O_A 91 ALVVYDITNSESLKKAQTWIKELRANADPSLIIVLVGNKKDLGSLRQVS------------FEDGQRLAAEEQLAAFYEA 158 (177)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHTTCSEEEEC
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCcccccccC------------HHHHHHHHHHcCcceeEEe
Confidence 9999999987666665444443333323467899999999997532110 1111112222233578899
Q sequence1 163 SAKTKDGVREVFEMATRA 180 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~ 180 (184)
|++++.|+.++|.++.+.
T Consensus 159 s~~~~~~i~~~~~~l~~~ 176 (177)
T 6L6O_A 159 SAKDNNNVEQVFLDLAAK 176 (177)
T ss_dssp BTTTTBSHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHhh
Confidence 999999999999988764
##### No 52 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1YU9_A GTP-binding protein; Rab GTPase, Rab4, vesicular trafficking; HET: GNP, SO4; 2.07A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=2.3e-23 Score=138.96 Aligned_cols=168 Identities=29% Similarity=0.402 Sum_probs=112.6 Template_Neff=12.000
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
+.....++|+++|.+++|||||++++....+.....++....+ ............+.+||++|.+.+...+..++..++
T Consensus 6 ~~~~~~~~i~v~G~~~~GKts~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 85 (175)
T 1YU9_A 6 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAA 85 (175)
T ss_dssp CCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGGTTCC
T ss_pred ccccceEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeEEEEEEEEEECCEEEEEEEEECCCCHHhHHhhHHHhccCC
Confidence 3456778999999999999999999987655432222111111 112223344568899999998888777888888999
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
++++++|+++..++......+...........|+++++||.|+....... ......++... ...++.
T Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~k~d~~~~~~~~------------~~~~~~~~~~~-~~~~~~ 152 (175)
T 1YU9_A 86 GALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVT------------FLEASRFAQEN-ELMFLE 152 (175)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHT-TCEEEE
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHHccCCCEEEEEEecccCcccCCCC------------HHHHHHHHHHC-CCEEEE
Confidence 99999999987666555333322222222468999999999997632110 00011111122 256788
Q sequence1 162 CSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
+|+.++.++.++|+++.+.+++
T Consensus 153 ~s~~~~~~i~~~~~~l~~~~~~ 174 (175)
T 1YU9_A 153 TSALTGEDVEEAFVQCARKILN 174 (175)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC
T ss_pred ccCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999887764
##### No 53 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4M8N_F PlexinC1 Intracellular Region, Ras-related protein; GTPase, GTPase activating protein, Rap; HET: GDP, AF3; 3.294A {Danio rerio}
Probab=99.78 E-value=2.4e-23 Score=141.57 Aligned_cols=167 Identities=30% Similarity=0.480 Sum_probs=113.9 Template_Neff=12.000
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
..+.++|+++|.+++|||+|++++..........++...........+.....+.+||++|.+.+...+..++..+|+++
T Consensus 3 ~~~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 4M8N_F 3 HMREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA 82 (199)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHTCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCTTSSCCCHHHHHHHCSEEE
T ss_pred CceeEEEEEECCCCCCHHHHHHHHHcCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 45678999999999999999999987655443333322222223333445578899999998888777888888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
+|+|+.+..++......+....... ....|+++++||.|+....... ......++.......++.+|
T Consensus 83 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~D~~~~~~~~------------~~~~~~~~~~~~~~~~~~~s 150 (199)
T 4M8N_F 83 LVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVG------------KEQGQNLARQWNNCAFLESS 150 (199)
T ss_dssp EEEESSSSHHHHTHHHHHHHHHHHHTCSCCCEEEEEECTTCGGGCCSC------------HHHHHHHHHHTTSCCBCCCB
T ss_pred EEEeCCChHHHHHHHHHHHHHHhcCCCCCCcEEEEEcCccccccccCC------------HHHHHHHHHHhCCCcEEEEe
Confidence 9999998766655543333333221 2368999999999986532110 11111222222236788999
Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184)
+.++.++.++|.++.+.+..
T Consensus 151 ~~~~~~i~~~~~~l~~~~~~ 170 (199)
T 4M8N_F 151 AKSKINVNEIFYDLVRQINS 170 (199)
T ss_dssp TTTTBSHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999998877653
##### No 54 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4M8N_G PlexinC1 Intracellular Region, Ras-related protein; GTPase, GTPase activating protein, Rap; HET: AF3, GDP; 3.294A {Danio rerio}
Probab=99.78 E-value=2.4e-23 Score=141.57 Aligned_cols=167 Identities=30% Similarity=0.480 Sum_probs=114.5 Template_Neff=12.000
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
..+.++|+++|.+++|||+|++++..........++...........+.....+.+||++|.+.+...+..++..+|+++
T Consensus 3 ~~~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 4M8N_G 3 HMREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA 82 (199)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHTCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCTTSSCCCTTHHHHHCSEEE
T ss_pred CceeEEEEEECCCCCCHHHHHHHHHcCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 45678999999999999999999987655443333322222223333445578899999998888777888888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
+|+|+.+..++......+....... ....|+++++||.|+....... ......++.......++.+|
T Consensus 83 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~D~~~~~~~~------------~~~~~~~~~~~~~~~~~~~s 150 (199)
T 4M8N_G 83 LVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVG------------KEQGQNLARQWNNCAFLESS 150 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSCCCBEEEEECCSCTTSCCSC------------HHHHHHHHHTTTSCEEECCB
T ss_pred EEEeCCChHHHHHHHHHHHHHHhcCCCCCCcEEEEEcCccccccccCC------------HHHHHHHHHHhCCCcEEEEe
Confidence 9999998766655543333333221 2368999999999986532110 11111222222236788999
Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184)
+.++.++.++|.++.+.+..
T Consensus 151 ~~~~~~i~~~~~~l~~~~~~ 170 (199)
T 4M8N_G 151 AKSKINVNEIFYDLVRQINS 170 (199)
T ss_dssp TTTTBSTTHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999998877653
##### No 55 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2EW1_A Ras-related protein Rab-30; G-protein, RAB, GTP analogue, Structural; HET: GNP; 2.0A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=2.7e-23 Score=142.58 Aligned_cols=166 Identities=25% Similarity=0.459 Sum_probs=110.0 Template_Neff=10.700
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
.....++|+++|++++|||+|++++..........++....+ .......+....+.+||++|+..+...+..++..+++
T Consensus 22 ~~~~~~~i~~~G~~~~GKtsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 101 (201)
T 2EW1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA 101 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCCccccccChhHhCCCCE
Confidence 346678999999999999999999986654332222211111 1122233445678999999998887778888889999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++|+|+++..++......+...........|+++++||.|+......... ....+.... ...++.+
T Consensus 102 ii~v~d~s~~~~~~~~~~~l~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~------------~~~~~~~~~-~~~~~~~ 168 (201)
T 2EW1_A 102 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQ------------RAEEFSEAQ-DMYYLET 168 (201)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHH------------HHHHHHHHH-TCCEEEC
T ss_pred EEEEEeCCCHHHHhhHHHHHHHHHHHCCCCCEEEEEEechhccccccCCHH------------HHHHHHHHc-CCEEEEe
Confidence 999999998776655533333222222235788999999999753211000 000111111 2567899
Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184)
|++++.++.++|.++...++
T Consensus 169 Sa~~~~~i~~~f~~l~~~~~ 188 (201)
T 2EW1_A 169 SAKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999998887664
##### No 56 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2FG5_A Ras-related protein Rab-31; G-PROTEIN, RAB, GTP ANALOGUE, Structural; HET: GNP; 2.801A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=3e-23 Score=141.38 Aligned_cols=166 Identities=25% Similarity=0.427 Sum_probs=109.7 Template_Neff=10.700
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
+...+.++++++|+.++|||+|++++..........++....+ ............+.+||++|+..+...+..++..++
T Consensus 18 ~~~~~~~~i~lvG~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 97 (192)
T 2FG5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA 97 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCeEEEEEEEeCCCChhhHhhhHHHhcCCC
Confidence 4567889999999999999999999987654332222211111 111112223467899999998888777888888999
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
++++|+|.++..++.... .|...+.. .....|+++++||.|+....... ......++.... ..++
T Consensus 98 ~~i~v~d~~~~~~~~~~~-~~l~~~~~~~~~~~~iilv~nK~D~~~~~~~~------------~~~~~~~~~~~~-~~~~ 163 (192)
T 2FG5_A 98 AAVIVYDITKQDSFYTLK-KWVKELKEHGPENIVMAIAGNKCDLSDIREVP------------LKDAKEYAESIG-AIVV 163 (192)
T ss_dssp EEEEEEETTCTHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC------------HHHHHHHHHTTT-CEEE
T ss_pred EEEEEEeCCCHHHHHHHH-HHHHHHHHHCCCCCEEEEEEeCCCccccccCC------------HHHHHHHHHHhC-CEEE
Confidence 999999999877766653 33333322 22467899999999986532110 011111111222 4678
Q sequence1 161 ECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
++|+.++.++.++|+++.+.+.
T Consensus 164 ~~Sa~~~~~i~~~~~~l~~~~~ 185 (192)
T 2FG5_A 164 ETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp ECBTTTTBSHHHHHHHHHHTCC
T ss_pred EecCCCCCCHHHHHHHHHhhcc
Confidence 9999999999999999887764
##### No 57 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4D0G_A RAS-RELATED PROTEIN RAB-14, RAB11 FAMILY-INTERACTING; HYDROLASE, RAB14 GTPASE, ENDOSOMAL TRAFFICKING; HET: GTP; 2.5A {HOMO SAPIENS}
Probab=99.78 E-value=3e-23 Score=137.90 Aligned_cols=168 Identities=31% Similarity=0.472 Sum_probs=107.5 Template_Neff=12.400
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
|+.+..++|+++|.+++|||++++++.+..+.....++....+ ......+.....+.+||++|.+.+...+..++..++
T Consensus 1 ~~~~~~~~i~v~G~~~~GKss~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 80 (175)
T 4D0G_A 1 MSYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGLERFRAVTRSYYRGAA 80 (175)
T ss_dssp --CCSEEEEEEECSTTSSHHHH----HHHCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECCCCSCCTTHHHHHTTCS
T ss_pred CCcceeEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcHHhHHHHHHHhcCCC
Confidence 3557789999999999999999999987655433222211111 111222334567899999998877777888888899
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
++++++++.+..++......+...........|+++++||.|+....... ......+....+ ..+++
T Consensus 81 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~ 147 (175)
T 4D0G_A 81 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT------------YEEAKQFAEENG-LLFLE 147 (175)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHTT-CEEEE
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEecccCcccCCCC------------HHHHHHHHHHcC-CCEEE
Confidence 99999999986665554333332222222467899999999987532110 111112222222 56899
Q sequence1 162 CSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
+|+.++.++.++|.++.+.+..
T Consensus 148 ~S~~~~~~i~~~~~~l~~~~~~ 169 (175)
T 4D0G_A 148 ASAKTGENVEDAFLEAAKKIYQ 169 (175)
T ss_dssp CCTTTCTTHHHHHHHHHHHHC-
T ss_pred eeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998877653
##### No 58 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3TKL_A Ras-related protein Rab-1A, LidA protein; Vesicle trafficking, PROTEIN TRANSPORT-PROTEIN BINDING; HET: GTP; 2.183A {Homo sapiens}
Probab=99.78 E-value=3.2e-23 Score=141.31 Aligned_cols=165 Identities=28% Similarity=0.510 Sum_probs=105.4 Template_Neff=11.300
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
.....+|+++|.+++|||+|++++..........++....+ ......++....+.+||++|...+...+..++..++++
T Consensus 13 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~v 92 (196)
T 3TKL_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHH---HHH--HHSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCCCcccCCceEEEEEEEEEEECCEEEEEEEEeCCCCHHhHHhHHHHccCCCEE
Confidence 34568999999999999999999987654433222221111 11222333456788999999887777777788889999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|+|+++..++......+...........|+++++||+|+....... ......++.... +.++++|
T Consensus 93 i~v~d~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nk~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s 159 (196)
T 3TKL_A 93 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVD------------YTTAKEFADSLG-IPFLETS 159 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC------------HHHHHHHHHHTT-CCEEEEC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEeCcCCCCcccCC------------HHHHHHHHHHhC-CCEEEee
Confidence 999999987766655433332222223468899999999986532110 001111122222 5688999
Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184)
++++.++.++|.++...+.
T Consensus 160 a~~~~~v~~~~~~l~~~~~ 178 (196)
T 3TKL_A 160 AKNATNVEQSFMTMAAEIK 178 (196)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999998887654
##### No 59 #####
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>1R2Q_A Ras-related protein Rab-5A; RAB, GTPase, GNP, atomic resolution; HET: GOL, GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=3.2e-23 Score=137.28 Aligned_cols=165 Identities=29% Similarity=0.458 Sum_probs=110.2 Template_Neff=12.300
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
.....+|+++|++|+|||+|++++..........+.....+ ............+.+||++|+..+...+..+...++++
T Consensus 3 ~~~~~~i~~~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 82 (170)
T 1R2Q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred ccceEEEEEECCCCCCchHHHHHHhcCCCCCCCCceeeeEEEEEEEEeCCEEEEEEEEeCCCCccchhcchhhccCCCEE
Confidence 35678999999999999999999987654432222211111 11122233456789999999988877777778889999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|+|+++..++......+...........|+++++||.|+........ .....++.. ....++++|
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~k~d~~~~~~~~~------------~~~~~~~~~-~~~~~~~~s 149 (170)
T 1R2Q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDF------------QEAQSYADD-NSLLFMETS 149 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH------------HHHHHHHHH-TTCEEEECC
T ss_pred EEEeeCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEehhhccccccCCH------------HHHHHHHHH-CCCeEEEEe
Confidence 9999999876666554333333332234678899999999865321100 011111112 225788999
Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184)
+.++.|+.++++++.+.+.
T Consensus 150 ~~~~~~i~~~~~~l~~~~~ 168 (170)
T 1R2Q_A 150 AKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp TTTCTTHHHHHHHHHHTSC
T ss_pred CCCCCCHHHHHHHHHHhhh
Confidence 9999999999998887664
##### No 60 #####
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>2WWX_A RAS-RELATED PROTEIN RAB-1, DRRA; GOLGI APPARATUS, PROTEIN TRANSPORT, ER-GOLGI; 1.5A {HOMO SAPIENS}
Probab=99.78 E-value=3.3e-23 Score=138.37 Aligned_cols=167 Identities=27% Similarity=0.484 Sum_probs=111.7 Template_Neff=11.800
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
+...+..+|+++|.+++|||++++++..........++....+ ......++....+.+||++|.+.+...+..++.+++
T Consensus 3 ~~~~~~~~i~~~G~~~~GKs~li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 82 (175)
T 2WWX_A 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (175)
T ss_dssp --CCEEEEEEEECCTTSSHHHHHTTSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTGGGCCSCCGGGTSSCS
T ss_pred ccccceeEEEEECCCCCCHHHHHHHHcCCCCCccccccceeEEEEEEEEECCEEEEEEEEeCCCchhhHHhchHHhcCCC
Confidence 3456789999999999999999999886654332222211111 112222334567899999998887777777888999
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
++++|+|+++..++.....++...........|+++++||.|+....... ......++.... ..+++
T Consensus 83 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~k~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~ 149 (175)
T 2WWX_A 83 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTKKVVD------------YTTAKEFADSLG-IPFLE 149 (175)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEEECCTTSCCCSC------------HHHHHHHHHHHT-CCEEE
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHHccCCCeEEEEEeCccccCCccCC------------HHHHHHHHHHhC-CCEEE
Confidence 99999999987776665433333322223468899999999986532110 011111222222 56899
Q sequence1 162 CSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~ 182 (184)
+|+.++.++.++|.++.+.+.
T Consensus 150 ~s~~~~~~i~~~~~~l~~~~~ 170 (175)
T 2WWX_A 150 TSAKNATNVEQSFMTMAAEIK 170 (175)
T ss_dssp EETTBCHHHHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999887664
##### No 61 #####
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>1KY3_A GTP-BINDING PROTEIN YPT7P; G PROTEIN, VESICULAR TRAFFIC, GTP; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.78 E-value=3.3e-23 Score=138.65 Aligned_cols=169 Identities=27% Similarity=0.459 Sum_probs=98.7 Template_Neff=12.300
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDG-KQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
...+.++|+++|++++|||||++++..........++..... .......+ ....+.+||++|+..+...+..++..++
T Consensus 4 ~~~~~~~i~v~G~~~~GKstl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 83 (182)
T 1KY3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEE--CCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCCC---C-------STTCC
T ss_pred cCceeEEEEEECCCCCCHHHHHHHHhCCCCCccCCCceEEEEEEEEEEECCCeEEEEEEEECCCCHHhHHhHHHHhcCCC
Confidence 345678999999999999999999987654432222211111 11112221 2347889999998887777878888999
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
++++|+|+.+..++......+....... ....|+++++||+|+....... ........+......
T Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~nK~D~~~~~~~~-----------~~~~~~~~~~~~~~~ 152 (182)
T 1KY3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIV-----------SEKSAQELAKSLGDI 152 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCC----SCTTEE-EECTTSCGGGCCS-----------CHHHHHHHHHHTTSC
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHHccCCCCCCCCEEEEEECcCCcccccCC-----------CHHHHHHHHHHhCCC
Confidence 9999999998766665543333332221 1368999999999986532210 011111222233336
Q sequence1 158 GYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
.++++|++++.|+.++|.++.+.+.+
T Consensus 153 ~~~~~S~~~~~~i~~~~~~l~~~~~~ 178 (182)
T 1KY3_A 153 PLFLTSAKNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp CEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999887764
##### No 62 #####
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>3KKQ_A Ras-related protein M-Ras; GTP-binding, GTPase, SIGNALING PROTEIN; HET: GDP; 1.2A {Mus musculus}
Probab=99.78 E-value=3.5e-23 Score=140.00 Aligned_cols=166 Identities=30% Similarity=0.438 Sum_probs=112.6 Template_Neff=10.700
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
..+.++|+++|+.++|||||++++....+.....++....+.......+....+.+||++|++.+...+..++..+++++
T Consensus 15 ~~~~~~I~ivG~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 94 (183)
T 3KKQ_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCcccCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHHhhCCEEE
Confidence 45678999999999999999999986655433333222222222233334557889999999888877878888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
+|+|++++.++......+....... ....|+++++||.|+...... ........+...+ +.++++|
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilv~~k~D~~~~~~~------------~~~~~~~~~~~~~-~~~~~~s 161 (183)
T 3KKQ_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKV------------TRDQGKEMATKYN-IPYIETS 161 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCS------------CHHHHHHHHHHHT-CCEEEEB
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCchhccCcee------------cHHHHHHHHHHhC-CCEEEEe
Confidence 9999998776655433332222211 136789999999999753211 0111112222223 5689999
Q sequence1 164 AKTK-DGVREVFEMATRAALQ 183 (184)
Q Consensus 164 ~~~~-~~i~~~~~~~~~~~~~ 183 (184)
+.++ .++.++|+++.+.+++
T Consensus 162 ~~~~~~~~~~~f~~l~~~~~~ 182 (183)
T 3KKQ_A 162 AKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp CSSSCBSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHh
Confidence 9997 7999999999888765
##### No 63 #####
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>3SFV_A Ras-related protein Rab-1A, LidA protein; LidA-Rab Complex, Coiled-coil domain, Type; HET: GDP; 1.73A {Homo sapiens}
Probab=99.78 E-value=3.6e-23 Score=139.41 Aligned_cols=166 Identities=28% Similarity=0.508 Sum_probs=111.2 Template_Neff=11.200
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
....++|+++|.+++|||+|++++..........++....+ .......+....+.+||++|...+...+..++..++++
T Consensus 13 ~~~~~~i~l~G~~~~GKst~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 92 (181)
T 3SFV_A 13 YDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (181)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHCCCCSSCCCCSSCEEEEEEEEETTEEEEEEEEECCCSGGGCTTHHHHTTTCCEE
T ss_pred ccceEEEEEECCCCCChHHHHHHHhcCCCChhhcccceeEEEEEEEEECCEEEEEEEEeCCCChHhhHhcHHHhcCCcEE
Confidence 35568999999999999999999986654332222111111 11222234456889999999888777788888899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|+|+++..++......+...........|+++++||+|+....... ......++...+ ..++.+|
T Consensus 93 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~k~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s 159 (181)
T 3SFV_A 93 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVD------------YTTAKEFADSLG-IPFLETS 159 (181)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHHT-CCEEECC
T ss_pred EEEEcCCCHHHHHHHHHHHHHHHHHccCCCeEEEEEeCcccCCCCCCC------------HHHHHHHHHHhC-CCEEEee
Confidence 999999987766655433332222223467899999999986532110 011111222222 5688999
Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184)
++++.|+.++|.++...+..
T Consensus 160 ~~~~~~i~~~~~~l~~~~~~ 179 (181)
T 3SFV_A 160 AKNATNVEQSFMTMAAEIKK 179 (181)
T ss_dssp TTTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999877653
##### No 64 #####
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>1KY2_A GTP-BINDING PROTEIN YPT7P; G PROTEIN, VESICULAR TRAFFIC, GTP; HET: GNP; 1.6A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.78 E-value=3.7e-23 Score=138.47 Aligned_cols=169 Identities=27% Similarity=0.459 Sum_probs=112.4 Template_Neff=12.300
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDG-KQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
...+.++|+++|++++|||||++++..........++..... .......+ ....+.+||++|+..+...+..+...++
T Consensus 4 ~~~~~~~i~v~G~~~~GKstl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 83 (182)
T 1KY2_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHSCCCSCCCCCCSEEEEEEEEEETTTEEEEEEEEEECCSGGGCTTTTGGGTTCS
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhCCCCCccccceEEEEEEEEEEEeCCCeEEEEEEEECCCcHHHHHhHHHHhcCCC
Confidence 345678999999999999999999987654432222211111 11112221 2347889999998887777878888999
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
++++|+|+.+..++......+....... ....|+++++||+|+....... ........+......
T Consensus 84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~nK~D~~~~~~~~-----------~~~~~~~~~~~~~~~ 152 (182)
T 1KY2_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIV-----------SEKSAQELAKSLGDI 152 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCCSCTTTSCEEEEEECTTSCTTTCCS-----------CHHHHHHHHHHTTSC
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCChhhhcccC-----------CHHHHHHHHHHhCCC
Confidence 9999999998766665543333332221 1368999999999986532210 011111222333336
Q sequence1 158 GYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
.++++|++++.|+.++|.++.+.+.+
T Consensus 153 ~~~~~S~~~~~~i~~~~~~l~~~~~~ 178 (182)
T 1KY2_A 153 PLFLTSAKNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp CEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred CEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999887764
##### No 65 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>7BTD_A GTP-binding protein Rheb; mTORC1, small GTPase, Rheb, SIGNALING; HET: GNP; 2.0A {Homo sapiens}
Probab=99.78 E-value=3.8e-23 Score=137.68 Aligned_cols=166 Identities=29% Similarity=0.393 Sum_probs=112.4 Template_Neff=12.400
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
...+..+|+++|.+++|||||++++..........++...........++....+.+||++|.+.+...+..++..+|++
T Consensus 2 ~~~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 81 (177)
T 7BTD_A 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSNDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (177)
T ss_dssp -CEEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECCCCTTCCCCGGGGSSCCEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCcCCCCCCcceecEEEEEEECCEEEEEEEEeCCCCcccccCchhheecCCEE
Confidence 45678999999999999999999998665443333322222222223334456889999999887777777778889999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
++|++..+..++......+........ ...|+++++||.|+....... ......++...+ ..++++
T Consensus 82 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~ 148 (177)
T 7BTD_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVIS------------YEEGKALAESWN-AAFLES 148 (177)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTTSCCCEEEEEECTTCTTTCCSC------------HHHHHHHHHHTT-CEEEEC
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhhCCCCCcEEEEeecCcCccccccC------------HHHHHHHHHHcC-CcEEEE
Confidence 999999887666555433333332221 268999999999986532110 111112222222 578899
Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184)
|+.++.++.++|.++.+.+.
T Consensus 149 s~~~~~~i~~~~~~l~~~~~ 168 (177)
T 7BTD_A 149 SAKENQTAVDVFRRIILEAE 168 (177)
T ss_dssp CTTCHHHHHHHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHHh
Confidence 99999999999999887654
##### No 66 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1S8F_B Ras-related protein Rab-9A; intracellular transport, vesicular trafficking, hemihedral; HET: GDP, BEZ; 1.77A {Canis lupus familiaris} SCOP: c.37.1.8
Probab=99.77 E-value=4.3e-23 Score=138.16 Aligned_cols=168 Identities=30% Similarity=0.500 Sum_probs=109.8 Template_Neff=11.700
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
......++++++|++++|||+|++++..........++....+ .......+....+.+||++|+..+...+..+...+|
T Consensus 4 ~~~~~~~~v~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 83 (177)
T 1S8F_B 4 AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSD 83 (177)
T ss_dssp TTCEEEEEEEEECCTTSSHHHHHHHHHHSCCC--CCEEEEEEEEEEEEEETTEEEEEEEEEEESSCCCHHHHHHHHTTCS
T ss_pred CCccceEEEEEEcCCCCCHHHHHHHHhcCCCCCCcccceEEEEEEEEEEECCEEEEEEEEeCCCChHHHhcChhhhCCCC
Confidence 3456778999999999999999999987654332222221111 111222333467889999998887777888888999
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
++++++++.+..++......+....... ....|+++++||.|+...... ......++...+..
T Consensus 84 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vlv~nk~D~~~~~~~-------------~~~~~~~~~~~~~~ 150 (177)
T 1S8F_B 84 CCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVS-------------TEEAQAWCRDNGDY 150 (177)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTTCSCGGGSCEEEEEECTTCSCCSSC-------------HHHHHHHHHHTTCC
T ss_pred EEEEEeeCCChHHHHHHHHHHHHHHHHhcCCCCcCCCEEEEEeCCccccCccC-------------HHHHHHHHHHhCCC
Confidence 9999999998766555432222221111 135789999999998542111 01111122222335
Q sequence1 158 GYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
.++++|++++.++.++|..+.+.+++
T Consensus 151 ~~~~~S~~~~~~i~~~~~~l~~~~~~ 176 (177)
T 1S8F_B 151 PYFETSAKDATNVAAAFEEAVRRVLA 176 (177)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHc
Confidence 67889999999999999999888764
##### No 67 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3MJH_A Ras-related protein Rab-5A (E.C.3.6.5.2), Early; PROTEIN-ZINC FINGER COMPLEX, BETA BETA; HET: GTP; 2.03A {Homo sapiens}
Probab=99.77 E-value=4.5e-23 Score=136.21 Aligned_cols=164 Identities=30% Similarity=0.465 Sum_probs=109.8 Template_Neff=12.400
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
...++|+++|+.++|||||++.+..........++....+ .......+....+.+||++|.+.+...+..++..+++++
T Consensus 3 ~~~~~i~~~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (168)
T 3MJH_A 3 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAI 82 (168)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred ceeEEEEEECCCCCChhHHHHHHhCCCCCcccccceeeeEEEEEEEeCCeEEEEEEEeCCCchhhHhhchhhccCCcEEE
Confidence 5678999999999999999999887654332222111111 111222334567899999999888777888888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
+|+|+++..++......+...........|+++++||.|+....... ......++... ...++++|+
T Consensus 83 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~d~~~~~~~~------------~~~~~~~~~~~-~~~~~~~s~ 149 (168)
T 3MJH_A 83 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD------------FQEAQSYADDN-SLLFMETSA 149 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC------------HHHHHHHHHTT-TCEEEECCT
T ss_pred EEeeCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEechhccccccCC------------HHHHHHHHHHC-CCeEEEeeC
Confidence 99999987666555443333333223468899999999986532110 01111122222 256889999
Q sequence1 165 KTKDGVREVFEMATRAAL 182 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~ 182 (184)
.++.++.+++.++.+.+.
T Consensus 150 ~~~~~i~~~~~~l~~~~~ 167 (168)
T 3MJH_A 150 KTSMNVNEIFMAIAKKLP 167 (168)
T ss_dssp TTCTTHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHhhcC
Confidence 999999999998877653
##### No 68 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>5SZH_B MICAL C-terminal-like protein, Ras-related protein; Mical-cL, DUF3585, Mical, Rab effector; HET: GNP; 2.3A {Homo sapiens}
Probab=99.77 E-value=4.8e-23 Score=141.25 Aligned_cols=166 Identities=28% Similarity=0.519 Sum_probs=111.4 Template_Neff=11.200
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
....++|+++|..++|||||++++..........++....+ ...+..++....+.+||++|+..+...+..++..++++
T Consensus 7 ~~~~~~v~l~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 86 (203)
T 5SZH_B 7 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 86 (203)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHhcCCCCcccccceeeEEEEEEEEECCEEEEEEEEeCCCChhhHHhchHHccCCCEE
Confidence 35678999999999999999999987765433222221111 12223334456789999999887777777788899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|+|+++..++.....++...........|+++++||.|+........ .....++...+ +.++++|
T Consensus 87 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~vv~nK~D~~~~~~~~~------------~~~~~~~~~~~-~~~~~~S 153 (203)
T 5SZH_B 87 IVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDN------------TTAKEFADSLG-IPFLETS 153 (203)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH------------HHHHHHHHHTT-CCEEECC
T ss_pred EEEEcCCCHHHHHHHHHHHHHHHHHccCCCeEEEEEeccccCCCccCCH------------HHHHHHHHHhC-CCEEEee
Confidence 9999999877666654333333222224678999999999865321100 01111122222 5789999
Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184)
+.++.++.++|.++...+.+
T Consensus 154 ~~~~~~v~~~~~~l~~~~~~ 173 (203)
T 5SZH_B 154 AKNATNVEQAFMTMAAEIKK 173 (203)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999998876643
##### No 69 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4KLZ_A GTP-binding protein Rit1; small GTPase, molecular switch (GTPase); HET: GDP; 2.3A {Homo sapiens}
Probab=99.77 E-value=4.9e-23 Score=137.22 Aligned_cols=165 Identities=27% Similarity=0.438 Sum_probs=104.6 Template_Neff=11.900
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
....+|+++|..|+||||+++++..........+............++....+.+||++|++.+...+..++..++++++
T Consensus 3 ~~~~~i~i~G~~~~GKss~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~ 82 (173)
T 4KLZ_A 3 SREYKLVMLGAGGVGKSAMTMQFISHRFPEDHDPTIEDAYKIRIRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFII 82 (173)
T ss_dssp --CEEEEEECCTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEECSSSSCEEEEEEECCCC---------TTSSCCEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceEEEEEECCEEEEEEEEeCCCchHHHHHHHHHhhcCCEEEE
Confidence 45789999999999999999999877655443333222223333444455778999999998887777778889999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
|+++.+..++......+....... ....|+++++||+|+...... ............+ ..++++|+
T Consensus 83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~------------~~~~~~~~~~~~~-~~~~~~s~ 149 (173)
T 4KLZ_A 83 CYSITDRRSFHEVREFKQLIYRVRRTDDTPVVLVGNKSDLKQLRQV------------TKEEGLALAREFS-CPFFETSA 149 (173)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHTCSSCCCEEEEEECTTCGGGCCS------------CHHHHHHHHHHTT-CCEEECBG
T ss_pred EEECCChHHHHHHHHHHHHHHHhhCCCCCcEEEEEeCccccccCCC------------CHHHHHHHHHHhC-CCEEEeec
Confidence 999998766655433222221111 236799999999998753211 0111112222233 56889999
Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184)
.++.|+.++|.++.+.+.+
T Consensus 150 ~~~~~v~~~~~~l~~~~~~ 168 (173)
T 4KLZ_A 150 AYRYYIDDVFHALVREIRR 168 (173)
T ss_dssp GGTBSHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999998877653
##### No 70 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>5UQW_B GTPase KRas (E.C.3.6.5.-); KRAS, GTPase, HYDROLASE; HET: GDP; 1.5A {Homo sapiens}
Probab=99.77 E-value=5.6e-23 Score=139.58 Aligned_cols=167 Identities=31% Similarity=0.476 Sum_probs=101.2 Template_Neff=10.900
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
+.+....+|+++|++++|||+|++++..........++....+......++....+.+||++|.+.+...+..+...+++
T Consensus 18 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 97 (189)
T 5UQW_B 18 GSHMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 97 (189)
T ss_dssp ---CCEEEEEEEECTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECC------------CTTCSE
T ss_pred CccCCcEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcccceEEEEEECCEEEEEEEEeCCCchHHHHHHHHHhhcCCE
Confidence 45667799999999999999999999876554333333222222333334445678899999988777777778888999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++++++.+..++.............. ....|+++++||.|+........ ....++.... ..++.
T Consensus 98 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~v~v~nK~D~~~~~~~~~-------------~~~~~~~~~~-~~~~~ 163 (189)
T 5UQW_B 98 FLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTK-------------QAQDLARSYG-IPFIE 163 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTTCSCCCEEEEEECTTCSCCCSCHH-------------HHHHHHHHHT-CCEEE
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCCCCCCCCHH-------------HHHHHHHHHC-CCEEE
Confidence 999999988766655433222222211 23689999999999875321111 0111111122 46788
Q sequence1 162 CSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
+|+.++.++.+++.++...+.+
T Consensus 164 ~S~~~~~~i~~~~~~l~~~~~~ 185 (189)
T 5UQW_B 164 TSAKTRQGVDDAFYTLVREIRK 185 (189)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998887654
##### No 71 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4DRZ_A Ras-related protein Rab-14; RAS, GTPASE, GTP, ONCOGENE, RAB14; HET: GDP; 2.3A {Homo sapiens}
Probab=99.77 E-value=6.4e-23 Score=139.30 Aligned_cols=167 Identities=29% Similarity=0.447 Sum_probs=106.9 Template_Neff=11.900
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
......+|+++|++++|||+|++++..........++..... .......+....+.+||++|...+...+...+..+|+
T Consensus 26 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~ 105 (196)
T 4DRZ_A 26 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAG 105 (196)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCC----CTTSCCCCEEEEEEECSSCEEEEEEEECC------CHHHHHHHTEEE
T ss_pred CceeeEEEEEECCCCCChHHHHHHHcCCccccCCCCcceEEEEEEEEEECCEEEEEEEEeCCCChhhHhhCHHHhcCCCE
Confidence 456678999999999999999999987665433322221111 1222233345688999999988777777778889999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++|+|+++..++......+...........|+++|+||.|+....... ......++...+ +.++.+
T Consensus 106 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~ 172 (196)
T 4DRZ_A 106 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT------------YEEAKQFAEENG-LLFLEA 172 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHHT-CEEEEC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEehhHhhhccCCC------------HHHHHHHHHHcC-CeEEEe
Confidence 9999999987666655443333333223467899999999986532110 011111222222 568899
Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184)
|+.++.++.++|.++.+.+.+
T Consensus 173 s~~~~~~i~~~~~~l~~~i~~ 193 (196)
T 4DRZ_A 173 SAKTGENVEDAFLEAAKKIYQ 193 (196)
T ss_dssp CTTTCTTHHHHHHHHHHHHHT
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999998887754
##### No 72 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6HDU_A Ras-related protein Rab-38; Rab small GTPase, membrane trafficking; HET: GTP; 1.793A {Homo sapiens}
Probab=99.77 E-value=7.7e-23 Score=137.85 Aligned_cols=170 Identities=22% Similarity=0.327 Sum_probs=106.6 Template_Neff=11.600
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIEVD-GKQVELALWDTAGLEDYDRLRPLSYPDT 80 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 80 (184)
+......+|+++|..++|||+|++++....+.....++....+. ...... .....+.+||++|++.+...+..++..+
T Consensus 7 ~~~~~~~~i~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 86 (184)
T 6HDU_A 7 PHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGLERFGNMTRVYYREA 86 (184)
T ss_dssp CCEEEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEEETTEEEEEEEEEECGGGGGSSCHHHHHTTC
T ss_pred CcccceEEEEEECCCCCCHHHHHHHHhcCCCCccCCcceeeEEEEEEEEcCCCCeEEEEEEeCCChHHhHhchHHHHhhC
Confidence 34566899999999999999999999876544332222221111 111111 1235788999999988877777788899
Q sequence1 81 DVILMCFSIDSPDSLENIPEKWTPEVKH----FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
+++++|+|+.+..++......+...... .....|+++++||+|+....... . ......++...+.
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~~k~D~~~~~~~~-~----------~~~~~~~~~~~~~ 155 (184)
T 6HDU_A 87 MGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLANKCDQGKDVLMN-N----------GLKMDQFCKEHGF 155 (184)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCCCTTSCCCEEEEEEECTTC---------------------CHHHHHHHHTC
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHHccCCCCCCcEEEEEEECCCCCCccccc-C----------hhHHHHHHHHhCC
Confidence 9999999998866555442222211111 11357899999999986532100 0 0011112222233
Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
..++++|++++.|+.+++.++...+.+
T Consensus 156 ~~~~~~s~~~~~~i~~~~~~l~~~~~~ 182 (184)
T 6HDU_A 156 VGWFETSAKENINIDEASRCLVKHILA 182 (184)
T ss_dssp SEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHh
Confidence 468899999999999999998877653
##### No 73 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3OES_A GTPase RhebL1; small gtpase, Structural Genomics, Structural; HET: GNP; 2.301A {Homo sapiens}
Probab=99.77 E-value=7.7e-23 Score=139.40 Aligned_cols=168 Identities=27% Similarity=0.379 Sum_probs=109.9 Template_Neff=11.900
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
+...+..+|+++|.+++|||||++++..........++.................+.+||++|.+.+...+..++..+|+
T Consensus 19 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 98 (201)
T 3OES_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCCceEEEEEEECCEEEEEEEEeCCCcHhhHhhhHHHhcCCCE
Confidence 44567899999999999999999999876554333322222222223334455688999999988777777778889999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++|+|+.+..++......+....... ....|+++++||.|+....... ......++...+ ..++.
T Consensus 99 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~ 165 (201)
T 3OES_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQ------------AVEGKKLAESWG-ATFME 165 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSC------------HHHHHHHHHHHT-CEEEE
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcCCCccCCC------------HHHHHHHHHHHC-CCEEE
Confidence 999999998776665544444333222 2468999999999997532110 011111222223 56889
Q sequence1 162 CSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
+|++++.++.++|.++...+.+
T Consensus 166 ~s~~~~~~~~~~~~~l~~~~~~ 187 (201)
T 3OES_A 166 SSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988877653
##### No 74 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6BSX_B GTP-binding protein Rheb; mTORC1 G-protein, SIGNALING PROTEIN; HET: E7S, GDP, EDO, ACT; 1.65A {Homo sapiens}
Probab=99.76 E-value=8.4e-23 Score=136.38 Aligned_cols=167 Identities=30% Similarity=0.416 Sum_probs=113.6 Template_Neff=12.200
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
+......+|+++|.+++|||+|++++..........++...........++....+.+||++|.+.+...+..+...+++
T Consensus 2 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 81 (178)
T 6BSX_B 2 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 81 (178)
T ss_dssp -CCEEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGGTTCCE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHcCCCCCccCCCcccceEEEEEECCEEEEEEEEeCCCCCcccccchHhcCCCCE
Confidence 45677899999999999999999999866544333332222222223333445678999999988777777777888999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++|++..+..++......+....... ....|+++++||.|+....... ......++...+ ..+++
T Consensus 82 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~~k~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~ 148 (178)
T 6BSX_B 82 YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVIS------------YEEGKALAESWN-AAFLE 148 (178)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECTTCGGGCCSC------------HHHHHHHHHHTT-CCEEE
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHHhhCCCCCcEEEEEeCCCCCccceeC------------HHHHHHHHHHcC-CeEEE
Confidence 999999998766655544333333222 2368999999999986532110 111112222323 57899
Q sequence1 162 CSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~ 182 (184)
+|+.++.++.++|.+++..+.
T Consensus 149 ~s~~~~~~i~~~~~~l~~~~~ 169 (178)
T 6BSX_B 149 SSAKENQTAVDVFRRIILEAE 169 (178)
T ss_dssp CCTTCHHHHHHHHHHHHHHHH
T ss_pred EecCCCccHHHHHHHHHHHHh
Confidence 999999999999999887654
##### No 75 #####
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Move to pairwise alignment
View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3RWO_B GTP-binding protein YPT32/YPT11; GTPASES, PROTEIN-GDP COMPLEX, EXOCYTOSIS, GOLGI; HET: GDP; 1.7A {Saccharomyces cerevisiae}
Probab=99.76 E-value=9e-23 Score=137.55 Aligned_cols=167 Identities=29% Similarity=0.368 Sum_probs=109.9 Template_Neff=11.700
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
.....++|+++|.+++|||||++++..........++.... ........+....+.+||++|...+...+..+...+++
T Consensus 6 ~~~~~~~i~v~G~~~~GKss~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~ 85 (185)
T 3RWO_B 6 DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYRAITSAYYRGAVG 85 (185)
T ss_dssp CCSEEEEEEEEEC-CCSHHHHHHHHHHSCCCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEESCTTCHHHHHHHHTTCSE
T ss_pred cccceeEEEEECCCCCCHHHHHHHHcCCCCCCCCCCcceEEEEEEEEEECCEEEEEEEEeCCCchHHHHhCHHHhcCCCE
Confidence 34567899999999999999999998776543222221111 11222333445678899999998777777778888999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++|++.++..++......+...........|+++|+||.|+....... ......++... ...++++
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nk~D~~~~~~~~------------~~~~~~~~~~~-~~~~~~~ 152 (185)
T 3RWO_B 86 ALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVP------------TDEAKNFAMEN-QMLFTET 152 (185)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC------------HHHHHHHHHHT-TCEEEEC
T ss_pred EEEEEcCCChHHHhhHHHHHHHHHHhCCCCCEEEEEEechhhhhhcCCC------------HHHHHHHHHHC-CCEEEEe
Confidence 9999999987666655433333222222468999999999986532110 01111111122 2467889
Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184)
|+.++.++.++|.++...+.+
T Consensus 153 s~~~~~~i~~~~~~l~~~~~~ 173 (185)
T 3RWO_B 153 SALNSDNVDKAFRELIVAIFQ 173 (185)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999888776654
##### No 76 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2IWR_A CENTAURIN GAMMA 1; ANK REPEAT, ZINC-FINGER, GTP-BINDING, NUCLEOTIDE-BINDING; HET: CAF; 1.5A {HOMO SAPIENS}
Probab=99.76 E-value=9e-23 Score=136.74 Aligned_cols=164 Identities=19% Similarity=0.285 Sum_probs=108.0 Template_Neff=11.700
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
+...+.++|+++|.+++|||+|++++....+... .++............+....+.+||++|.+.+ .++..+++
T Consensus 2 ~~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~-----~~~~~~~~ 75 (178)
T 2IWR_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADA 75 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCCC-SSCSSSEEEEEEEETTEEEEEEEEECSSSCCH-----HHHHHCSE
T ss_pred CCCCCeEEEEEECCCCCChHHHHHHHhcCCCCCC-CCCccceEEEEEEECCEEEEEEEEeCCCCCCh-----HHhhhCCE
Confidence 4567789999999999999999999987655432 12211222223333444567899999997653 35567899
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFG 158 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
+++|+|++++.++..... +...+... ....|+++++||.|+........ .......++.....+.
T Consensus 76 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~ivv~~k~d~~~~~~~~~----------~~~~~~~~~~~~~~~~ 144 (178)
T 2IWR_A 76 VIFVFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVV----------GDARARALCADMKRCS 144 (178)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCS----------CHHHHHHHHHHHSSEE
T ss_pred EEEEeeCCCHHHHHHHHH-HHHHHHHhhhcCCCCCeEEEEeeccccCCCCCccc----------CHHHHHHHHHHccCCe
Confidence 999999998877766433 22222211 14689999999999875321100 0111112222222367
Q sequence1 159 YMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 159 ~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
++.+|++++.++.++|.++.+.+.+
T Consensus 145 ~~~~S~~~~~~i~~~~~~l~~~~~~ 169 (178)
T 2IWR_A 145 YYETCATYGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999998887653
##### No 77 #####
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>1EK0_A GTP-BINDING PROTEIN YPT51; G PROTEIN, VESICULAR TRAFFIC, GTP; HET: GNP, GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.76 E-value=9.3e-23 Score=135.31 Aligned_cols=166 Identities=27% Similarity=0.467 Sum_probs=110.7 Template_Neff=12.100
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
+.++|+++|..++|||||++++..........+...... .......+....+.+||++|.+.+...+..++..+|++++
T Consensus 2 ~~~~i~i~G~~~~GKs~li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 81 (170)
T 1EK0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCcccCCCcEEEEEEEEEEEECCEEEEEEEEeCCCcHHHHhhhhhhcCCCCEEEE
Confidence 468999999999999999999987655433222221111 1122333445678999999998888778888889999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184)
++|+.+..++......+..+........|+++++||.|+......... .......++...+ +.++.+|++
T Consensus 82 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~k~d~~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~~sa~ 151 (170)
T 1EK0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKV---------AREEGEKLAEEKG-LLFFETSAK 151 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCS---------CHHHHHHHHHHHT-CEEEECCTT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHHcCCCCEEEEEEEcHHhcccCCcccC---------CHHHHHHHHHHhC-CEEEEeeCC
Confidence 999988766665543333333222246789999999999864321110 0111111222222 568899999
Q sequence1 166 TKDGVREVFEMATRAAL 182 (184)
Q Consensus 166 ~~~~i~~~~~~~~~~~~ 182 (184)
++.|+.++|+++.+.+.
T Consensus 152 ~~~~i~~~~~~l~~~i~ 168 (170)
T 1EK0_A 152 TGENVNDVFLGIGEKIP 168 (170)
T ss_dssp TCTTHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHhhcc
Confidence 99999999998887653
##### No 78 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>5CM8_B Ral guanine nucleotide dissociation stimulator-like; Complex G-protein Exchange Factor, signaling; 2.6A {Mus musculus}
Probab=99.76 E-value=9.6e-23 Score=139.89 Aligned_cols=165 Identities=32% Similarity=0.471 Sum_probs=108.7 Template_Neff=11.000
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
....++|+++|.+++|||||++++....+.....++....+...+...+....+.+||++|...+...+..++..+++++
T Consensus 10 ~~~~~~i~i~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 89 (203)
T 5CM8_B 10 GPALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 89 (203)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHCSSCCSSCCTTSTTTTEEEEEETTEEEEEEEEECTTCTTCSSHHHHHHTTCSEEE
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHhcCcCCCCCCCCcccceEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhccCCEEE
Confidence 45668999999999999999999887665433333222223333334444567899999999888878888888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
+|+++.+..++......+..+.... ....|+++|+||+|+........ ......... ....++.+|
T Consensus 90 lv~~~~~~~s~~~~~~~~~~~~~~~~~~~~pvilv~nK~D~~~~~~~~~------------~~~~~~~~~-~~~~~~~~S 156 (203)
T 5CM8_B 90 CVFSITDDESFQATQEFREQILRVKNDESIPFLLVGNKCDLNDKRKVPL------------SECQLRAQQ-WAVPYVETS 156 (203)
T ss_dssp EEECTTCSHHHHTHHHHHHHHHTTCCCTTCSEEEEECC---CCSCCSCH------------HHHHHHHGG-GTCCEEECB
T ss_pred EEeeCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeChhcCCCCCCCH------------HHHHHHHHH-hCCCEEEee
Confidence 9999998777665543333332221 23579999999999865321100 000000111 125678899
Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184)
++++.++.++|.++.+.+.
T Consensus 157 ~~~~~~v~~~~~~i~~~~~ 175 (203)
T 5CM8_B 157 AKTRENVDKVFFDLMREIR 175 (203)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHH
Confidence 9999999999999887654
##### No 79 #####
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>4KU4_A Ras-3 from Cryphonectria parasitica; small G protein, GTP/GDP binding; HET: GDP; 1.6A {Cryphonectria parasitica}
Probab=99.76 E-value=1.1e-22 Score=139.44 Aligned_cols=166 Identities=30% Similarity=0.491 Sum_probs=110.1 Template_Neff=11.600
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
.....+|+++|.+++|||+|++++....+.....++....+.......+....+.+||++|.+.+...+..++..+++++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~vi 90 (206)
T 4KU4_A 11 GKITDKIAMLGEGGVGKTSLTVNLTKHVFSETYDPTLEDSYRRQCVIDGIPSHLEILDTAGQEEYGALREQWIRQNELFV 90 (206)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHTCTTTTTCCCSSCCEEEEEEEETTEEEEEEEECCCC-----HHHHHHHHTCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhccCCCCCCCCcccceeEEEEeCCeeeeEEEEeCCCccchHhHHHHHHhcCCEEE
Confidence 45678999999999999999999987765443333322222323333344567899999998877777878888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-------------------CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPE 145 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (184)
+|+|+++..++......+....... ....|+++++||.|+....... ..
T Consensus 91 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~~k~D~~~~~~~~------------~~ 158 (206)
T 4KU4_A 91 IVFDVTRRSSFEAAERLFEEVIQTKRKLDETRRHPGDRHPDDLPFAPSLVVLVGNKCDLDTRREVG------------TL 158 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHHHHTC-------------CCCGGGEEEEEECTTCGGGCSSC------------HH
T ss_pred EEEeCCChhhHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCcEEEEEEeCcccccccccC------------HH
Confidence 9999998776666544443332211 1246799999999987633211 01
Q sequence1 146 EGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 146 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
....++...+ +.++.+|++++.++.++|.++.+.+.+
T Consensus 159 ~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~l~~~~~~ 195 (206)
T 4KU4_A 159 EGSSLAKKLG-CGFVETSAKLGTNVEEAFFSVVRADRR 195 (206)
T ss_dssp HHHHHHHHHT-CEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CcEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 1111222223 578999999999999999998887653
##### No 80 #####
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>1ZJ6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, Transport Protein; HET: SO4, G3D; 2.0A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=1.3e-22 Score=137.91 Aligned_cols=163 Identities=18% Similarity=0.284 Sum_probs=105.1 Template_Neff=10.300
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
..+..+|+++|++++|||||++++....+... .++.... ... .......+.+||++|++.+...+..++..+++++
T Consensus 13 ~~~~~ki~ivG~~~~GKstl~~~l~~~~~~~~-~~t~~~~-~~~--~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ii 88 (187)
T 1ZJ6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN-VEE--IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSCSS-CEE--EEETTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCce-eEE--EEECCEEEEEEECCCChhhhhHHHHhcCCCCEEE
Confidence 45678999999999999999999987665322 1221111 111 1123457889999999888888888888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
+|+|.++..++......+...... .....|+++++||.|+...... ...... ............++.+|
T Consensus 89 ~v~d~~~~~~~~~~~~~l~~~~~~~~~~~~~iilv~nK~D~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~S 158 (187)
T 1ZJ6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV-AEISQF---------LKLTSIKDHQWHIQACC 158 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH-HHHHHH---------HTGGGCCSSCEEEEECB
T ss_pred EEEECCChHhHHHHHHHHHHHhcCHhhhCCeEEEEEeCCCCCcCCCH-HHHHHH---------cCchhhCCCCeEEEECC
Confidence 999999876555554444444322 1236889999999999753211 111000 00000011124678899
Q sequence1 164 AKTKDGVREVFEMATRAA 181 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~ 181 (184)
|+++.|+.++|.++.+..
T Consensus 159 a~~~~gi~~~~~~l~~~~ 176 (187)
T 1ZJ6_A 159 ALTGEGLCQGLEWMMSRL 176 (187)
T ss_dssp TTTTBTHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 999999999999987754
##### No 81 #####
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>5Z2M_A Oxysterol-binding protein-related protein 1, Ras-related; GTPase, Effector, Complex, ENDOCYTOSIS; HET: GTP; 2.142A {Mus musculus}
Probab=99.76 E-value=1.3e-22 Score=135.00 Aligned_cols=168 Identities=26% Similarity=0.465 Sum_probs=109.8 Template_Neff=12.400
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
+......+|+++|+.++|||||++++..........++....+ ............+.+||++|++.+...+..++..++
T Consensus 3 ~~~~~~~~i~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 82 (176)
T 5Z2M_A 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSLGVAFYRGAD 82 (176)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHCCCCSCCCCCCSCEEEEEEEEETTEEEEEEEEECCCSTTTHHHHGGGCTTCS
T ss_pred cccceEEEEEEECCCCCCHHHHHHHHhCCCcCcCCCCcceeEEEEEEEEECCEEEEEEEEECCCCHHhHhhhHHHHccCC
Confidence 4456678999999999999999999987655433222221111 112222334567889999999888777877888999
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKH----FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
++++|+++++..++......+...... .....|+++++||.|+......... ...........
T Consensus 83 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nk~d~~~~~~~~~~-------------~~~~~~~~~~~ 149 (176)
T 5Z2M_A 83 CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKR-------------AQAWCYSKNNI 149 (176)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCGGGCCEEEEEECTTSSSCCSCHHH-------------HHHHHHHTTSC
T ss_pred EEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCCCCcEEEEEECcccccCcccHHH-------------HHHHHHHcCCC
Confidence 999999998866554442222221111 1136789999999998653211100 00111111235
Q sequence1 158 GYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
.++++|++++.|+.++|.++...+++
T Consensus 150 ~~~~~s~~~~~~i~~~~~~l~~~~~~ 175 (176)
T 5Z2M_A 150 PYFETSAKEAINVEQAFQTIARNALK 175 (176)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred CEEEeecCCCCCHHHHHHHHHHHHhc
Confidence 78899999999999999999888764
##### No 82 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>5SZI_A Ras-related protein Rab-8A, MICAL C-terminal-like; Mical-cL, DUF3585, Mical, Rab effector; HET: GNP; 2.85A {Homo sapiens}
Probab=99.76 E-value=1.4e-22 Score=138.99 Aligned_cols=168 Identities=30% Similarity=0.505 Sum_probs=87.5 Template_Neff=11.800
Q sequence1 2 AMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDT 80 (184)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 80 (184)
.+......+|+++|++++|||+|++++..........++....+ ......++....+.+||++|...+...+..++..+
T Consensus 4 ~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 83 (209)
T 5SZI_A 4 AKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 83 (209)
T ss_dssp -----CCEEEEEECSTTSSHC-----------------CCSEEEEEEEEEETTEEEEEEEEEECCSHHHHHHHHHTTSSC
T ss_pred CCCcccCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCCHHhHHhHHHHhcCC
Confidence 34567789999999999999999999987654433222221111 12223333456789999999887777787888899
Q sequence1 81 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160 (184)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
|++++|+|+++..++......+...........|+++++||.|+....... ......++...+ ..++
T Consensus 84 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~ 150 (209)
T 5SZI_A 84 MGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVS------------KERGEKLALDYG-IKFM 150 (209)
T ss_dssp SEEEEEEETTCHHHHHTHHHH---HH-----HHHHEE-EECTTCCTTCCSC------------HHHHHHHHHHHT-CEEE
T ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCCCEEEEEECcCCCCcccCC------------HHHHHHHHHHcC-CCEE
Confidence 999999999987766665433333333222468999999999987532110 111112222222 5689
Q sequence1 161 ECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
++|++++.++.+++.++...+.
T Consensus 151 ~~s~~~~~~i~~~~~~l~~~~~ 172 (209)
T 5SZI_A 151 ETSAKANINVENAFFTLARDIK 172 (209)
T ss_dssp ECBTTH----------HHHHHH
T ss_pred EccCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999887764
##### No 83 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4RKF_B Ras-related protein Rab-3; GTP hydrolysis, hydrolase; HET: 1PE, GNP; 1.5A {Drosophila melanogaster}
Probab=99.76 E-value=1.4e-22 Score=137.19 Aligned_cols=165 Identities=29% Similarity=0.458 Sum_probs=110.7 Template_Neff=11.600
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
....++|+++|.+++|||||++++....+.....++...... ...........+.+||++|+..+...+..++..+|++
T Consensus 20 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ 99 (190)
T 4RKF_B 20 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGLERYRTITTAYYRGAMGF 99 (190)
T ss_dssp SSEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTCTTCSEE
T ss_pred cceeEEEEEECCCCCChHHHHHHHcCCCCccccccceEEEEEEEEEEECCEEEEEEEEeCCCcHHHHHHhHHHhCCCCEE
Confidence 445689999999999999999999877654333222221111 1111223346789999999988888888888899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|+|+++..++......+...........|+++++||.|+....... ......+.... ...++.+|
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~k~D~~~~~~~~------------~~~~~~~~~~~-~~~~~~~s 166 (190)
T 4RKF_B 100 ILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVIS------------FERGRQLADQL-GVEFFETS 166 (190)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHH-TCEEEECB
T ss_pred EEEEeCCCHHHHHhHHHHHHHHHHhCcCCCEEEEEEeccccCCcccCC------------HHHHHHHHHHH-CCcEEEee
Confidence 999999987666555433322222222467999999999987642110 00011111122 25688999
Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184)
+..+.++.++|.++.+.+.
T Consensus 167 ~~~~~~i~~~~~~l~~~~~ 185 (190)
T 4RKF_B 167 AKENVNVKAVFERLVDIIC 185 (190)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887764
##### No 84 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1Z08_A Ras-related protein Rab-21; Rab GTPase, Rab21, Vesicular trafficking; HET: GNP; 1.8A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=1.5e-22 Score=134.46 Aligned_cols=166 Identities=27% Similarity=0.495 Sum_probs=105.1 Template_Neff=12.000
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
.....+++++|++++|||++++++..........++....+ .......+..+.+.+||++|...+...+..++..++++
T Consensus 3 ~~~~~~v~i~G~~~~GKs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 82 (170)
T 1Z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred ccceEEEEEECCCCCCHHHHHHHHhCCCCCcCCCCcceeeEEEEEEEECCEEEEEEEEeCCCchHhhhchhhhhcCCCEE
Confidence 35688999999999999999999886644332222221111 11222234456789999999888777788888899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|+++.+..++......+...........|+++++||.|+....... .......+... ...++.+|
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~d~~~~~~~~------------~~~~~~~~~~~-~~~~~~~s 149 (170)
T 1Z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS------------IQEAESYAESV-GAKHYHTS 149 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSC------------HHHHHHHHHHT-TCEEEEEB
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCCccCCC------------HHHHHHHHHHh-CCeEEEEe
Confidence 999999987666555333333222222357899999999987632110 01111112222 25678899
Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184)
+.++.++.++|.++.+.+++
T Consensus 150 ~~~~~~v~~~~~~l~~~~~~ 169 (170)
T 1Z08_A 150 AKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp TTTTBSHHHHHHHHHHHHHC
T ss_pred ccCCCCHHHHHHHHHHHHhc
Confidence 99999999999999888764
##### No 85 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1G16_B RAS-RELATED PROTEIN SEC4; G protein Rab, SIGNALING PROTEIN; HET: MSE, GDP; 1.8A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.75 E-value=1.6e-22 Score=134.37 Aligned_cols=162 Identities=28% Similarity=0.564 Sum_probs=107.8 Template_Neff=11.900
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
..++|+++|++++|||+|++++..........++..... ............+.+||++|.+.+...+..+...++++++
T Consensus 2 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~ 81 (170)
T 1G16_B 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHTCCCCC-------CCEEEEEEESSSSEEEEEEEECTTCTTTSCCCHHHHTTEEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccceeeeeEEEEEEEEEECCEEEEEEEEeCCCChhhHHhhHHHhCCCCEEEE
Confidence 467999999999999999999987655433322221111 1122233345678999999988888788888889999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184)
+++++++.++......+...........|+++++||+|+....... .....++...+ ..++.+|+.
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~k~d~~~~~~~~-------------~~~~~~~~~~~-~~~~~~s~~ 147 (170)
T 1G16_B 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTA-------------DQGEALAKELG-IPFIESSAK 147 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECTTCTTCCSCH-------------HHHHHHHHHHT-CCEEECBTT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHHCCCCCeEEEEEeCcccCCCCCCH-------------HHHHHHHHHhC-CCEEEeeCC
Confidence 9999987766655433333322222468899999999986421110 11111222222 468899999
Q sequence1 166 TKDGVREVFEMATRAAL 182 (184)
Q Consensus 166 ~~~~i~~~~~~~~~~~~ 182 (184)
++.++.++|.++.+.+.
T Consensus 148 ~~~~~~~~~~~l~~~~~ 164 (170)
T 1G16_B 148 NDDNVNEIFFTLAKLIQ 164 (170)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999887664
##### No 86 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1G17_B RAS-RELATED PROTEIN SEC4; G protein Rab, SIGNALING PROTEIN; HET: GNP; 2.0A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.75 E-value=1.6e-22 Score=134.37 Aligned_cols=162 Identities=28% Similarity=0.564 Sum_probs=109.7 Template_Neff=11.900
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
..++|+++|++++|||+|++++..........++..... ............+.+||++|.+.+...+..+...++++++
T Consensus 2 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~ 81 (170)
T 1G17_B 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccceeeeeEEEEEEEEEECCEEEEEEEEeCCCChhhHHhhHHHhCCCCEEEE
Confidence 467999999999999999999987655433322221111 1122233345678999999988888788888889999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184)
+++++++.++......+...........|+++++||+|+....... .....++...+ ..++.+|+.
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~k~d~~~~~~~~-------------~~~~~~~~~~~-~~~~~~s~~ 147 (170)
T 1G17_B 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTA-------------DQGEALAKELG-IPFIESSAK 147 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCSSCEEEEEEECTTCTTCCSCH-------------HHHHHHHHHHT-CCEEEEBTT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHHCCCCCeEEEEEeCcccCCCCCCH-------------HHHHHHHHHhC-CCEEEeeCC
Confidence 9999987766655433333322222468899999999986421110 11111222222 468899999
Q sequence1 166 TKDGVREVFEMATRAAL 182 (184)
Q Consensus 166 ~~~~i~~~~~~~~~~~~ 182 (184)
++.++.++|.++.+.+.
T Consensus 148 ~~~~~~~~~~~l~~~~~ 164 (170)
T 1G17_B 148 NDDNVNEIFFTLAKLIQ 164 (170)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999887664
##### No 87 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1ZBD_A RABPHILIN-3A, GUANOSINE-5'-TRIPHOSPHATE; G PROTEIN, EFFECTOR, RABCDR, SYNAPTIC; HET: GTP; 2.6A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.75 E-value=1.6e-22 Score=138.47 Aligned_cols=167 Identities=29% Similarity=0.566 Sum_probs=109.2 Template_Neff=11.400
Q sequence1 2 AMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDT 80 (184)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 80 (184)
.+.....++|+++|.+++|||+|++++....+.....++..... ............+.+||++|.+.+...+..++..+
T Consensus 2 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dt~g~~~~~~~~~~~~~~~ 81 (203)
T 1ZBD_A 2 SHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGA 81 (203)
T ss_dssp CCSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEE-----EEEEEEECCSGGGHHHHHTTGGGC
T ss_pred CcccceeEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhHhhHhHhcCCC
Confidence 35667889999999999999999999987655432222221111 11122223356788999999988877788888899
Q sequence1 81 DVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 159 (184)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
+++++|+++++..++.... .+...+... ....|+++++||.|+....... ......+..... ..+
T Consensus 82 ~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~ 147 (203)
T 1ZBD_A 82 MGFILMYDITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVGNKCDMEDERVVS------------SERGRQLADHLG-FEF 147 (203)
T ss_dssp SEEEEEEETTCHHHHHHHH-HHHHHHHHHSCSSCEEEEEEECTTCTTSCCSC------------HHHHHHHHHHHT-CEE
T ss_pred CEEEEEEeCCCHHHHHHHH-HHHHHHHHHCCCCCCEEEEEeCccCCCccCCC------------HHHHHHHHHHHC-CCE
Confidence 9999999999877665543 233333222 2467899999999987532110 000111111112 467
Q sequence1 160 MECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 160 ~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
+.+|+.++.++.++|.++.+.+.
T Consensus 148 ~~~s~~~~~~i~~~~~~l~~~~~ 170 (203)
T 1ZBD_A 148 FEASAKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp EECBTTTTBSSHHHHHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHHHHHHH
Confidence 88999999999999988877654
##### No 88 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1WMS_B Ras-related protein Rab-9A; GTPase, PROTEIN TRANSPORT; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=1.7e-22 Score=135.41 Aligned_cols=166 Identities=30% Similarity=0.491 Sum_probs=106.9 Template_Neff=11.600
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
....++|+++|.+++|||+|++++..........++....+ .......+....+.+||++|++.+...+..+...++++
T Consensus 4 ~~~~~~i~~iG~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 83 (177)
T 1WMS_B 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCCCCcceeEEEEEEeEEEECCEEEEEEEEECCCCHHHHhcChhhhCCCCEE
Confidence 45678999999999999999999986654322222221111 11122233346788999999888877788888899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKH----FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 159 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
++|+++.+..++......+...... .....|+++|+||.|+....... .....++.......+
T Consensus 84 ~~v~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~~k~D~~~~~~~~-------------~~~~~~~~~~~~~~~ 150 (177)
T 1WMS_B 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVST-------------EEAQAWCRDNGDYPY 150 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCC----CCCCEEEEEECTTCSCCSSCH-------------HHHHHHHHHTTCCCE
T ss_pred EEEeeCCCHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcCCCcCCH-------------HHHHHHHHHhCCCCE
Confidence 9999999876655443222222111 11367999999999986421110 111111222222567
Q sequence1 160 MECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 160 ~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
+.+|++++.++.++|.++.+.+++
T Consensus 151 ~~~s~~~~~~i~~~~~~l~~~~~~ 174 (177)
T 1WMS_B 151 FETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEeecCCCCCHHHHHHHHHHHHHh
Confidence 889999999999999998887653
##### No 89 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2HUP_B Crystal structure of human RAB43; G-PROTEIN, RAB, GDP, STRUCTURAL GENOMICS; HET: GDP; 2.05A {Homo sapiens}
Probab=99.75 E-value=1.9e-22 Score=137.85 Aligned_cols=167 Identities=27% Similarity=0.420 Sum_probs=108.1 Template_Neff=11.500
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
...+.++|+++|..++|||+|++++..........++..... .......+....+.+||++|.+.+...+..++..+|+
T Consensus 25 ~~~~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 104 (201)
T 2HUP_B 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG 104 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEECC---CEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred cccceEEEEEECCCCCChHHHHHHHhcCCCCCCcCceEEEEEEEEEEEECCEEEEEEEEECCCChhhHhhHHHHhhhCCE
Confidence 356778999999999999999999987655433222211111 1122223345678999999988777777777889999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++|+|..+..++......+...........|+++|+||.|+....... ......++.......++++
T Consensus 105 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilv~~k~d~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 172 (201)
T 2HUP_B 105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVS------------LAEAQSLAEHYDILCAIET 172 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCSCCEEEEEEECGGGGGGCCSC------------HHHHHHHHHHTTCSCEEEC
T ss_pred EEEEEeCCChHHhhcHHHHHHHHHHHcCCCCEEEEEEcCCChhhchhCC------------HHHHHHHHHHcCCcEEEEE
Confidence 9999999987666655433333332223578999999999987532110 1111122223333578999
Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184)
|++++.++.++|+++.+.+.
T Consensus 173 S~~~~~~i~~l~~~l~~~i~ 192 (201)
T 2HUP_B 173 SAKDSSNVEEAFLRVATELI 192 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999998887765
##### No 90 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3C5C_B RAS-like protein 12; ras, rasl12, gdp, gtpase, Structural; HET: GDP; 1.85A {Homo sapiens}
Probab=99.75 E-value=1.9e-22 Score=136.40 Aligned_cols=167 Identities=27% Similarity=0.393 Sum_probs=110.8 Template_Neff=11.400
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
+...+..+|+++|.+++|||+|++++....+.....++....+.......+..+.+.+||++|++.+... ..++..+|+
T Consensus 16 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-~~~~~~~d~ 94 (187)
T 3C5C_B 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ----CEEEEEEEECTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCCT-HHHHTTCSE
T ss_pred cCCCceeEEEEECCCCCCHHHHHHHHhcCCCcccCCCCcccceeEEEEECCEEEEEEEEeCCCCCCccch-HHHhhhCCE
Confidence 3457789999999999999999999987655443333322222223334445678899999998766554 566788999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 159 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
+++|++++...++......+....... ....|+++++||.|+....... ......++...+ +.+
T Consensus 95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~~k~d~~~~~~~~------------~~~~~~~~~~~~-~~~ 161 (187)
T 3C5C_B 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVT------------KAEGVALAGRFG-CLF 161 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSC------------HHHHHHHHHHHT-CEE
T ss_pred EEEEEeCCChHhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCcchhhhcccc------------HHHHHHHHHHhC-CcE
Confidence 999999998776666533332222211 1268999999999987532110 111112222322 568
Q sequence1 160 MECSAKTK-DGVREVFEMATRAALQ 183 (184)
Q Consensus 160 ~~~s~~~~-~~i~~~~~~~~~~~~~ 183 (184)
+.+|++++ .|+.++|.++.+.+.+
T Consensus 162 ~~~s~~~~~~~~~~~~~~i~~~~~~ 186 (187)
T 3C5C_B 162 FEVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp EECCTTSCHHHHHHHHHHHHHHHTC
T ss_pred EEEecCCChhHHHHHHHHHHHHHHh
Confidence 89999998 9999999999887764
##### No 91 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2GF9_A Ras-related protein Rab-3D; G-PROTEIN, RAB, Structural Genomics, Structural; HET: GDP; 1.53A {Homo sapiens}
Probab=99.75 E-value=2e-22 Score=136.69 Aligned_cols=168 Identities=31% Similarity=0.507 Sum_probs=111.3 Template_Neff=11.200
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
+.....++|+++|.+++|||+|++++..........++..... ............+.+||++|.+.+...+..++..++
T Consensus 17 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d 96 (189)
T 2GF9_A 17 RGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAM 96 (189)
T ss_dssp TTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCS
T ss_pred CCCceeEEEEEECCCCCCHHHHHHHHcCCCCCcccCCccEEEEEEEEEEECCEEEEEEEEeCCCchHHHHHHHHHhCCCe
Confidence 4556789999999999999999999886654433222211111 111112233467899999999888777877888999
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
++++|+++++..++......+...........|+++++||.|+....... ......+....+ ..++.
T Consensus 97 ~ii~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~iilv~nk~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~ 163 (189)
T 2GF9_A 97 GFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVP------------AEDGRRLADDLG-FEFFE 163 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHHT-CEEEE
T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHHHhcCCCCEEEEEEeCCcCCCCcCCC------------HHHHHHHHHHhC-CEEEE
Confidence 99999999987766655433322222222467899999999986532110 000111111112 46788
Q sequence1 162 CSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
+|+.++.++.++|+++.+.+.+
T Consensus 164 ~s~~~~~~i~~~~~~l~~~~~~ 185 (189)
T 2GF9_A 164 ASAKENINVKQVFERLVDVICE 185 (189)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998887653
##### No 92 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1X1R_A Ras-related protein M-Ras; GTP-binding, SIGNALING PROTEIN; HET: GDP; 1.3A {Mus musculus} SCOP: c.37.1.8
Probab=99.75 E-value=2e-22 Score=135.57 Aligned_cols=166 Identities=30% Similarity=0.431 Sum_probs=111.1 Template_Neff=11.000
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
..+.++|+++|+.++|||||++++..........++............+....+.+||++|...+...+..++..+++++
T Consensus 10 ~~~~~~i~ivG~~~~GKssli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 89 (178)
T 1X1R_A 10 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 89 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred cCCceEEEEECCCCCChHHHHHHHhcCCCCCCCCCCcccceEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhhhCCEEE
Confidence 35678999999999999999999887654333222222222222233334567889999998888878888888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
+|+++++..++......+....... ....|+++++||+|+...... .......++...+ ..++++|
T Consensus 90 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~D~~~~~~~------------~~~~~~~~~~~~~-~~~~~~s 156 (178)
T 1X1R_A 90 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKV------------TRDQGKEMATKYN-IPYIETS 156 (178)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCS------------CHHHHHHHHHHHT-CCEEEEB
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCchhhcceee------------cHHHHHHHHHHhC-CCEEEEc
Confidence 9999988766655433222222221 136799999999998753211 0111111222222 5789999
Q sequence1 164 AKTK-DGVREVFEMATRAALQ 183 (184)
Q Consensus 164 ~~~~-~~i~~~~~~~~~~~~~ 183 (184)
+..+ .+++++|.++...+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~ 177 (178)
T 1X1R_A 157 AKDPPLNVDKTFHDLVRVIRQ 177 (178)
T ss_dssp CSSSCBSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHh
Confidence 9997 7999999998887765
##### No 93 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4FMC_B ROrf2, Ras-related protein Rab-1A; alpha-beta fold, Rab1-GAP, Rab1, PROTEIN; HET: AF3, PGE, GDP; 2.8A {Escherichia coli}
Probab=99.75 E-value=2.1e-22 Score=133.45 Aligned_cols=165 Identities=28% Similarity=0.510 Sum_probs=110.9 Template_Neff=12.400
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
....++|+++|.+++|||+|++++..........+...... ......++....+.+||++|.+.+...+..++..++++
T Consensus 3 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~i 82 (171)
T 4FMC_B 3 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 82 (171)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred ccceEEEEEECCCCCChhHHHHHHcCCCCCccccccceeEEEEEEEEECCEEEEEEEEeCCCchHHHHchhhHhccCCEE
Confidence 45678999999999999999999886654332222211111 11222233456789999999888887888888999999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|+|+++..++......+...........|+++++||.|+....... ......++...+ ..++++|
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nk~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s 149 (171)
T 4FMC_B 83 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVD------------YTTAKEFADSLG-IPFLETS 149 (171)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHHT-CCEEECC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHccCCCcEEEEEeCCcCCCCccCC------------HHHHHHHHHHhC-CCEEEcc
Confidence 999999987666555433333222223467899999999987643211 011111222222 5688999
Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184)
+.++.++.+++.++.+.+.
T Consensus 150 ~~~~~~i~~~~~~l~~~~~ 168 (171)
T 4FMC_B 150 AKNATNVEQSFMTMAAEIK 168 (171)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887664
##### No 94 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2P5S_B RAS and EF-hand domain containing; G-PROTEIN, RAB, GDP, STRUCTURAL GENOMICS; HET: GDP; 2.15A {Homo sapiens}
Probab=99.75 E-value=2.1e-22 Score=138.12 Aligned_cols=170 Identities=30% Similarity=0.457 Sum_probs=104.9 Template_Neff=10.400
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
.....+|+++|++++|||||++++..........++....+ ...+..++....+.+||++|++.+...+..++..++++
T Consensus 25 ~~~~~~ili~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~~ 104 (199)
T 2P5S_B 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHSCCC-------CCCEEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHhcCccccCCcccceEEEEEEEEEECCEEEEEEEEeCCCCHHHHHhhHHHHccCCEE
Confidence 45678999999999999999999986654322222221111 11222333446788999999887777788888899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
++|+|+++..++..... +...+... ....|+++++||.|+.......... ..........+... ...++++
T Consensus 105 i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~pvliv~nK~D~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~ 176 (199)
T 2P5S_B 105 LLLYDVTCEKSFLNIRE-WVDMIEDAAHETVPIMLVGNKADIRDTAATEGQK------CVPGHFGEKLAMTY-GALFCET 176 (199)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHC---CCEEEEEECGGGHHHHHHTTCC------CCCHHHHHHHHHHH-TCEEEEC
T ss_pred EEEEeCCCHHHHHHHHH-HHHHHHHHccCCCcEEEEEEhhhccccccccccc------eechHHHHHHHHHH-CCEEEEe
Confidence 99999998766655533 33333222 2468999999999987532111000 00001111111111 2357789
Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184)
|++++.++.++|+++.+.+.
T Consensus 177 S~~~~~~i~~~~~~l~~~~~ 196 (199)
T 2P5S_B 177 SAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999887664
##### No 95 #####
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>1Z0J_A Ras-related protein Rab-22A, FYVE-finger-containing Rab5; Rab Effector, Rab GTPase, Rab22; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8
Probab=99.75 E-value=2.1e-22 Score=133.53 Aligned_cols=165 Identities=22% Similarity=0.395 Sum_probs=106.2 Template_Neff=12.200
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
.+..+|+++|+.++|||+|++++..........++..... ............+.+||++|.+.+...+..++..+++++
T Consensus 4 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 83 (170)
T 1Z0J_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTSEEEE
T ss_pred ccceEEEEECCCCCChHHHHHHHhCCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEeCCCcHHHHhhHhHHhccCCEEE
Confidence 5678999999999999999999987655433222211111 111122233457889999999888878888888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
+|+|+.+...+......+..+........|+++++||.|+....... ......++.... ..++++|+
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~k~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s~ 150 (170)
T 1Z0J_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVM------------ERDAKDYADSIH-AIFVETSA 150 (170)
T ss_dssp -EEETTCHHHHHHHHHHHHHHHHHSCTTS----EEECTTCGGGCCSC------------HHHHHHHHHHTT-CEEEECBT
T ss_pred EEeeCCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCccCCccccCC------------HHHHHHHHHHhC-CCEEEeeC
Confidence 99999987666555333333333333467888999999986532110 011111122222 56889999
Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184)
+++.|+.++|.++.+.+.+
T Consensus 151 ~~~~~i~~~~~~l~~~~~~ 169 (170)
T 1Z0J_A 151 KNAININELFIEISRRIPS 169 (170)
T ss_dssp TTTBSHHHHHHHHHHHCCC
T ss_pred CCCCCHHHHHHHHHHhccC
Confidence 9999999999999887654
##### No 96 #####
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>2ERY_B Ras-related protein R-Ras2; RRAS2, GDP/GTP binding, GTP hydrolysis; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=2.2e-22 Score=134.03 Aligned_cols=164 Identities=30% Similarity=0.472 Sum_probs=112.0 Template_Neff=11.800
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
....+++++|.+|+||||+++++..........++...........++....+.+||++|...+...+..++..+|++++
T Consensus 3 ~~~~~v~l~G~~~~GKst~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~G~~~~~~~~~~~~~~~d~~il 82 (172)
T 2ERY_B 3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL 82 (172)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHCCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCSCCCCBTTBCCHHHHCSEEEE
T ss_pred cccEEEEEECCCCCcHHHHHHHHHcCCcccccCCCccccEEEEEEECCEEEEEEEEeCCChhhhHhHHHHHHhhCCEEEE
Confidence 35789999999999999999999876554333333222222222334445678999999988887778888889999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
|+++.+..++......+....... ....|+++++||.|+....... ......++...+ ..++.+|+
T Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vilv~nk~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s~ 149 (172)
T 2ERY_B 83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVT------------QEEGQQLARQLK-VTYMEASA 149 (172)
T ss_dssp EEETTCHHHHTTHHHHHHHHHHHHTCSCCCEEEEEECTTCGGGCSSC------------HHHHHHHHHHTT-CEEEECBT
T ss_pred EEeCCChHhHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccC------------HHHHHHHHHHhC-CCEEEccc
Confidence 999998666666544443333221 2367999999999986532110 111111222222 57899999
Q sequence1 165 KTKDGVREVFEMATRAAL 182 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~ 182 (184)
+.+.++.+++.++...+.
T Consensus 150 ~~~~~i~~~~~~l~~~~~ 167 (172)
T 2ERY_B 150 KIRMNVDQAFHELVRVIR 167 (172)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999887664
##### No 97 #####
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>6IF3_B Arf-GAP with coiled-coil, ANK repeat; Rab35, ACAP2, complex, cryatal structure; HET: GTP; 1.5A {Homo sapiens}
Probab=99.75 E-value=2.5e-22 Score=135.47 Aligned_cols=166 Identities=31% Similarity=0.563 Sum_probs=105.7 Template_Neff=11.700
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
+.....++|+++|.+++|||||++.+..........++..... .......+....+.+||++|+..+...+..+...++
T Consensus 9 ~~~~~~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 88 (186)
T 6IF3_B 9 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGLERFRTITSTYYRGTH 88 (186)
T ss_dssp CSSSEEEEEEEEECTTSSHHHH---HHSC-----CCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCCHHHHHTTCS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHhCCCCCCcccceeEEEEEEEEEEECCEEEEEEEEeCCCChhhHHHHHHHhcCCC
Confidence 3456778999999999999999999987654332222221111 112223334568899999999877777888888999
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
++++|+|+++..++..... |...+.......|+++++||.|+....... ......++.... +.+++
T Consensus 89 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~ivv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~ 154 (186)
T 6IF3_B 89 GVIVVYDVTSAESFVNVKR-WLHEINQNCDDVCRILVGNKNDDPERKVVE------------TEDAYKFAGQMG-IQLFE 154 (186)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHCSSCEEEEEEECCCCG-GGCCS------------CHHHHHHHHHHT-CEEEE
T ss_pred EEEEEEeCCCHHHHHHHHH-HHHHHHHHCCCCCEEEEEeCCCCCCCCCCC------------HHHHHHHHHHhC-CCEEE
Confidence 9999999988766655533 333333333467899999999986532110 011111111222 56789
Q sequence1 162 CSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~ 182 (184)
+|++++.++.++|+++.+.+.
T Consensus 155 ~s~~~~~~i~~~~~~l~~~~~ 175 (186)
T 6IF3_B 155 TSAKENVNVEEMFNCITELVL 175 (186)
T ss_dssp CBTTTTBSHHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999998877664
##### No 98 #####
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>1KAO_A RAP2A, GUANOSINE-5'-DIPHOSPHATE; GTP-BINDING PROTEIN, SMALL G PROTEIN; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=2.7e-22 Score=132.29 Aligned_cols=164 Identities=32% Similarity=0.493 Sum_probs=108.5 Template_Neff=12.500
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC 86 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (184)
+..+++++|..++|||||++++..........++.................+.+||++|.+.+...+..++..+++++++
T Consensus 2 ~~~~i~vvG~~~~GKstl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1KAO_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCccccCCCchhceEEEEEECCeeEEEEEEECCCChhhHhhHHHHhccCCEEEEE
Confidence 46799999999999999999888665433222222111122222333456789999999887777777788899999999
Q sequence1 87 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184)
++..+...+......+....... ....|+++++||.|+....... ...........+ ..++.+|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~nk~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s~~ 148 (167)
T 1KAO_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVS------------SSEGRALAEEWG-CPFMETSAK 148 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSC------------HHHHHHHHHHHT-SCEEEECTT
T ss_pred EeCCCHHHHHhHHHHHHHHHHhhccCCCCEEEEEeCCCCcccccCC------------HHHHHHHHHHHC-CCEEEecCC
Confidence 99998665555433333222211 1367899999999986532110 011111112222 578899999
Q sequence1 166 TKDGVREVFEMATRAALQ 183 (184)
Q Consensus 166 ~~~~i~~~~~~~~~~~~~ 183 (184)
++.++.++|+++...+.+
T Consensus 149 ~~~~i~~l~~~l~~~~~~ 166 (167)
T 1KAO_A 149 SKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhc
Confidence 999999999998877654
##### No 99 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1Z08_C Ras-related protein Rab-21; Rab GTPase, Rab21, Vesicular trafficking; HET: GNP; 1.8A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=3e-22 Score=132.63 Aligned_cols=166 Identities=27% Similarity=0.495 Sum_probs=109.3 Template_Neff=12.300
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
.+...+|+++|.+++||||+++++..........++....+ .......+....+.+||++|...+...+..++..++++
T Consensus 3 ~~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 82 (170)
T 1Z08_C 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEEECTTSCHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEEETTEEEEEEEEECCCGGGGGGTCGGGTTTCSEE
T ss_pred ccceEEEEEECCCCCCHHHHHHHHhCCCCCcCCCCcceeeEEEEEEEECCEEEEEEEEeCCCChHhhhchhhhhcCCCEE
Confidence 35688999999999999999999986644332222221111 11122233456789999999887777777788899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|++.+++.++......+...........|+++++||.|+....... ......++... ...++.+|
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~d~~~~~~~~------------~~~~~~~~~~~-~~~~~~~s 149 (170)
T 1Z08_C 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS------------IQEAESYAESV-GAKHYHTS 149 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSC------------HHHHHHHHHHT-TCEEEECB
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCCccCCC------------HHHHHHHHHHh-CCeEEEEe
Confidence 999999887665554332222222222357899999999987642110 01111112222 24678899
Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184)
+.++.++.++|+++.+.+++
T Consensus 150 ~~~~~~i~~~~~~l~~~~~~ 169 (170)
T 1Z08_C 150 AKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp TTTTBSHHHHHHHHHHHHHC
T ss_pred ccCCCCHHHHHHHHHHHHhc
Confidence 99999999999999887764
##### No 100 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2HUP_A Crystal structure of human RAB43; G-PROTEIN, RAB, GDP, STRUCTURAL GENOMICS; HET: GDP; 2.05A {Homo sapiens}
Probab=99.74 E-value=3.3e-22 Score=136.67 Aligned_cols=168 Identities=27% Similarity=0.415 Sum_probs=109.9 Template_Neff=11.500
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
...+.++|+++|.+++|||+|++++..........++....+ .......+....+.+||++|...+...+..+...+|+
T Consensus 25 ~~~~~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 104 (201)
T 2HUP_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG 104 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred CCcceEEEEEECCCCCCHHHHHHHHhCCCCCcccCcccccceEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 346778999999999999999999987655432222221111 1122233345678999999988777777777888999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++|+|.+.+.++......+...........|+++++||.|+....... ......++...+...++++
T Consensus 105 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nk~d~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 172 (201)
T 2HUP_A 105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVS------------LAEAQSLAEHYDILCAIET 172 (201)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHTTCSEEEEC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCCcccCC------------HHHHHHHHHHhCCCCEEEe
Confidence 9999999987666655333333222222578999999999987532110 1111122233333578999
Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184)
|++++.++.++|.++.+.+.+
T Consensus 173 S~~~~~~v~~~~~~l~~~i~~ 193 (201)
T 2HUP_A 173 SAKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999998887653
##### No 101 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2X77_A ADP-RIBOSYLATION FACTOR; GTP-BINDING PROTEIN, SMALL GTPASE, NUCLEOTIDE-BINDING; HET: GDP; 2.1A {LEISHMANIA MAJOR}
Probab=99.74 E-value=3.3e-22 Score=135.87 Aligned_cols=165 Identities=18% Similarity=0.253 Sum_probs=110.2 Template_Neff=10.800
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
...+.++|+++|.+++|||||++++......... ++....+ . ......+.+.+||++|+..+...+..++..+|++
T Consensus 18 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~-~t~~~~~-~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 93 (189)
T 2X77_A 18 PADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTV-PTVGVNL-E--TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAV 93 (189)
T ss_dssp CTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEEC-SSTTCCE-E--EEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEE
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHhcCCccccC-CccceEE-E--EEEECCEEEEEEECCCCcccHHHHHHhcCCCCEE
Confidence 3466789999999999999999999866543221 1111111 1 1222356789999999988887888888899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
++|+|+++..++......+...+... ....|+++|+||+|+....... .... ....... ....+.++.+
T Consensus 94 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vilv~nk~D~~~~~~~~-~~~~--------~~~~~~~-~~~~~~~~~~ 163 (189)
T 2X77_A 94 IYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEA-EIAE--------QLGVSSI-MNRTWTIVKS 163 (189)
T ss_dssp EEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHH-HHHH--------HTTGGGC-CSSCEEEEEC
T ss_pred EEEEECCChHhHHHHHHHHHHHhccHHhcCCEEEEEEECCCCCCCCCHH-HHHH--------HhCChhH-cCCCEEEEEC
Confidence 99999998776666544444443322 2368899999999987632111 1000 0000000 1112467899
Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184)
|+.++.|+.+++.++...+.
T Consensus 164 s~~~~~~v~~~~~~l~~~~~ 183 (189)
T 2X77_A 164 SSKTGDGLVEGMDWLVERLR 183 (189)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999887654
##### No 102 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6IF2_B Ras-related protein Rab-35, Iporin; Rab35, RUSC2, complex, ENDOCYTOSIS; HET: GTP; 2.4A {Homo sapiens}
Probab=99.74 E-value=3.8e-22 Score=134.74 Aligned_cols=167 Identities=30% Similarity=0.555 Sum_probs=112.3 Template_Neff=11.600
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
+...+.++|+++|.+++|||||++++..........++....+ .......+....+.+||++|+..+...+..++..+|
T Consensus 9 ~~~~~~~~i~~~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d 88 (186)
T 6IF2_B 9 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGLERFRTITSTYYRGTH 88 (186)
T ss_dssp CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCCHHHHHTTCC
T ss_pred cccceeEEEEEECCCCCCHHHHHHHHhcCCCCCCceeeEEEEEEEEEEEECCEEEEEEEEeCCCChhhHhhHHHHccCCC
Confidence 4456789999999999999999999987654332222221111 122233344568899999999888888888888999
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
++++|+++++..++.... .|...........|+++++||.|+....... .......+... .+.++.
T Consensus 89 ~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vv~nk~D~~~~~~~~------------~~~~~~~~~~~-~~~~~~ 154 (186)
T 6IF2_B 89 GVIVVYDVTSAESFVNVK-RWLHEINQNCDDVCRILVGNKNDDPERKVVE------------TEDAYKFAGQM-GIQLFE 154 (186)
T ss_dssp EEEEEEETTCHHHHHTHH-HHHHHHHHHCSSCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHT-TCEEEE
T ss_pred EEEEEEeCCChHHHHHHH-HHHHHHHHhCCCCeEEEEEecCCCcccccCC------------HHHHHHHHHHh-CCcEEE
Confidence 999999998876666553 3333333333467899999999987532110 01111111122 256889
Q sequence1 162 CSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
+|++++.++.++++++...+.+
T Consensus 155 ~s~~~~~~i~~~~~~l~~~~~~ 176 (186)
T 6IF2_B 155 TSAKENVNVEEMFNCITELVLR 176 (186)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988876643
##### No 103 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1WA5_A GTP-BINDING NUCLEAR PROTEIN RAN, IMPORTIN; NUCLEAR TRANSPORT-COMPLEX, NUCLEAR TRANSPORT, EXPORTIN; HET: GTP; 2.0A {CANIS FAMILIARIS} SCOP: c.37.1.8
Probab=99.74 E-value=3.8e-22 Score=133.09 Aligned_cols=164 Identities=26% Similarity=0.457 Sum_probs=111.1 Template_Neff=12.100
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
......+|+++|..++|||+|++++..........++..... ............+.+||++|.......+..++..+|+
T Consensus 6 ~~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 85 (176)
T 1WA5_A 6 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 85 (176)
T ss_dssp -CCSEEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTGGGGGTTCCE
T ss_pred CCcccEEEEEECCCCCCHHHHHHHHhCCCCCCcccCcccceEEEEEEEECCcEEEEEEEeCCCCcchhhhhHHHhhcCCE
Confidence 446678999999999999999999887654433222211111 1111222345678999999988777777778889999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++|+++++..++...... ...+.......|+++++||.|+....... ....++...+ ..++++
T Consensus 86 ~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~~k~d~~~~~~~~--------------~~~~~~~~~~-~~~~~~ 149 (176)
T 1WA5_A 86 AIIMFDVTSRVTYKNVPNW-HRDLVRVCENIPIVLCGNKVDIKDRKVKA--------------KSIVFHRKKN-LQYYDI 149 (176)
T ss_dssp EEEEEETTCHHHHHTHHHH-HHHHHHHSSSCCEEEEEECTTSSCCSSCT--------------TTCCHHHHHT-CEEEEC
T ss_pred EEEEEeCCChHHHHHHHHH-HHHHHHHCCCCCEEEEEechhcCCccCCH--------------HHHHHHHHcC-CCEEEc
Confidence 9999999987666655333 33332222478999999999987632110 0011122222 678999
Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184)
|++++.++.++|.++.+.+.+
T Consensus 150 s~~~~~~v~~~~~~l~~~~~~ 170 (176)
T 1WA5_A 150 SAKSNYNFEKPFLWLARKLIG 170 (176)
T ss_dssp CTTTCTTTTHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999998887653
##### No 104 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3NKV_A Ras-related protein Rab-1B; posttranslational modification, AMPylation, adenylylation, Rab1b; HET: GNP, AMP; 1.7A {Homo sapiens}
Probab=99.74 E-value=3.9e-22 Score=132.92 Aligned_cols=165 Identities=27% Similarity=0.507 Sum_probs=109.8 Template_Neff=12.100
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
..+..+|+++|++++|||||++++..........++....+ .......+....+.+||++|...+...+..++..++++
T Consensus 6 ~~~~~~i~l~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~i 85 (175)
T 3NKV_A 6 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 85 (175)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCSEE
T ss_pred ccceEEEEEECCCCCCHHHHHHHHcCCCCCccccccceeeEEEEEEEECCEEEEEEEEeCCCChhhHhhchHHccCCcEE
Confidence 35678999999999999999999987654333222221111 12222233446788999999887777777778899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|+|+++..++......+...........|+++++||.|+........ .....++... .+.++.+|
T Consensus 86 v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~k~d~~~~~~~~~------------~~~~~~~~~~-~~~~~~~s 152 (175)
T 3NKV_A 86 IVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDN------------TTAKEFADSL-GIPFLETS 152 (175)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH------------HHHHHHHHHH-TCCEEECC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHccCCCcEEEEEechhcCCCcccCH------------HHHHHHHHHH-CCCEEEee
Confidence 9999999876665543333222222224578999999999876421110 0111122222 25688999
Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184)
+.++.++.++|.++.+.+.
T Consensus 153 ~~~~~~i~~~~~~l~~~~~ 171 (175)
T 3NKV_A 153 AKNATNVEQAFMTMAAEIK 171 (175)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887764
##### No 105 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4HLQ_B TBC1 domain family member 20; Rab1b, RabGAP, Fluorides, GTPase-Activating Proteins; HET: GDP, SO4, BEF; 3.3A {Homo sapiens}
Probab=99.74 E-value=3.9e-22 Score=132.92 Aligned_cols=165 Identities=27% Similarity=0.507 Sum_probs=109.8 Template_Neff=12.100
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
..+..+|+++|++++|||||++++..........++....+ .......+....+.+||++|...+...+..++..++++
T Consensus 6 ~~~~~~i~l~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~i 85 (175)
T 4HLQ_B 6 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 85 (175)
T ss_dssp CSEEEEEEEEECSSSSHHHHHHHHHTCCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred ccceEEEEEECCCCCCHHHHHHHHcCCCCCccccccceeeEEEEEEEECCEEEEEEEEeCCCChhhHhhchHHccCCcEE
Confidence 35678999999999999999999987654333222221111 12222233446788999999887777777778899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|+|+++..++......+...........|+++++||.|+........ .....++... .+.++.+|
T Consensus 86 v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~k~d~~~~~~~~~------------~~~~~~~~~~-~~~~~~~s 152 (175)
T 4HLQ_B 86 IVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDN------------TTAKEFADSL-GIPFLETS 152 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCCTTCCSCH------------HHHHHHHHHH-TCCEEEEB
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHccCCCcEEEEEechhcCCCcccCH------------HHHHHHHHHH-CCCEEEee
Confidence 9999999876665543333222222224578999999999876421110 0111122222 25688999
Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184)
+.++.++.++|.++.+.+.
T Consensus 153 ~~~~~~i~~~~~~l~~~~~ 171 (175)
T 4HLQ_B 153 AKNATNVEQAFMTMAAEIK 171 (175)
T ss_dssp SSSSTBHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887764
##### No 106 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2ERX_A GTP-binding protein Di-Ras2; DIRAS2, GTP hydrolysis, TRANSPORT PROTEIN; HET: GDP, PO4; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=3.9e-22 Score=132.56 Aligned_cols=163 Identities=28% Similarity=0.432 Sum_probs=108.9 Template_Neff=12.100
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC 86 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (184)
...+|+++|..|+||||+++++....+.....++....+......+.....+.+||++|.+.+...+..++..++++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~v~v 81 (172)
T 2ERX_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHhcCCCCcccCCCcccceEEEEEeCCEEEEEEEEECCCCCCchhhhhHHcccCCEEEEE
Confidence 46789999999999999999998765443333332222222223333456789999999888877788888899999999
Q sequence1 87 FSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
+++++..++......+....... ....|+++++||+|+........ .......... ...++++|+
T Consensus 82 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~k~D~~~~~~~~~------------~~~~~~~~~~-~~~~~~~s~ 148 (172)
T 2ERX_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQS------------SEAEALARTW-KCAFMETSA 148 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCH------------HHHHHHHHHH-TCEEEECBT
T ss_pred eeCCChHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCcccCCH------------HHHHHHHHHh-CCcEEEeec
Confidence 99998766665544443332211 13689999999999876421110 0011111112 256788999
Q sequence1 165 KTKDGVREVFEMATRAAL 182 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~ 182 (184)
+++.++.++|+++.+.+.
T Consensus 149 ~~~~~~~~~~~~l~~~~~ 166 (172)
T 2ERX_A 149 KLNHNVKELFQELLNLEK 166 (172)
T ss_dssp TTTBSHHHHHHHHHHTCC
T ss_pred CCCccHHHHHHHHHHHHH
Confidence 999999999998877653
##### No 107 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2CE2_X GTPASE HRAS; SIGNALING PROTEIN, GUANINE NUCLEOTIDE BINDING; HET: XY2, GDP; 1.0A {HOMO SAPIENS}
Probab=99.74 E-value=4e-22 Score=131.44 Aligned_cols=163 Identities=33% Similarity=0.522 Sum_probs=109.2 Template_Neff=12.400
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC 86 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (184)
+..+|+++|++++|||||++++..........++............+....+.+||++|...+...+..+...+++++++
T Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2CE2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCcccCccCCCccceeEEEEEECCEEEEEEEEECCCchhhHhhHHHHhhhCCEEEEE
Confidence 45799999999999999999998665433222222222222223333456788999999888877788888889999999
Q sequence1 87 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184)
+++.+..++......+....... ....|+++++||.|......... ....++...+ ..++.+|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~~k~d~~~~~~~~~-------------~~~~~~~~~~-~~~~~~s~~ 147 (166)
T 2CE2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESR-------------QAQDLARSYG-IPYIETSAK 147 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHH-------------HHHHHHHHHT-CCEEEECTT
T ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCCcEEEEEehhhcccCccCHH-------------HHHHHHHHhC-CCEEEEeCC
Confidence 99998766655433333322211 23689999999999875321111 1111112222 467889999
Q sequence1 166 TKDGVREVFEMATRAALQ 183 (184)
Q Consensus 166 ~~~~i~~~~~~~~~~~~~ 183 (184)
++.++.++++++...+.+
T Consensus 148 ~~~~i~~~~~~i~~~~~~ 165 (166)
T 2CE2_X 148 TRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp TCTTHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHHc
Confidence 999999999999887764
##### No 108 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1VG8_C Ras-related protein Rab-7; GTP-binding protein, PROTEIN TRANSPORT; HET: GNP; 1.7A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.74 E-value=4.1e-22 Score=137.06 Aligned_cols=167 Identities=26% Similarity=0.460 Sum_probs=108.9 Template_Neff=11.200
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
.+....+|+++|..++|||+|++++....+.....++....+ ...+........+.+||++|+..+...+..+...+|+
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (207)
T 1VG8_C 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp ---CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEEETTEEEEEEEEECCSSGGGCCSCCGGGTTCSE
T ss_pred ccceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHhhhHHHhcCCCE
Confidence 456678999999999999999999987765433222221111 1122223345678999999988777777777788999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKH----FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFG 158 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
+++|+|+++..++......+...... .....|+++|+||.|+........ .............
T Consensus 84 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~~k~D~~~~~~~~~-------------~~~~~~~~~~~~~ 150 (207)
T 1VG8_C 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATK-------------RAQAWCYSKNNIP 150 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHH-------------HHHHHHHHTTSCC
T ss_pred EEEEEeCCChhHHHhHHHHHHHHHHHcCCCCccCCcEEEEEechhhcccccCHH-------------HHHHHHHHcCCCC
Confidence 99999999876665543333322211 113678999999999865321100 0011111122356
Q sequence1 159 YMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 159 ~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
++++|+.++.|+.++|.++...+.+
T Consensus 151 ~~~~S~~~~~~i~~~~~~l~~~~~~ 175 (207)
T 1VG8_C 151 YFETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 8899999999999999998877653
##### No 109 #####
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Move to pairwise alignment
View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2BCG_Y Secretory pathway GDP dissociation inhibitor; RabGTPase, geranylgeranylation, vesicular transport, Protein; HET: GER, GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=4.5e-22 Score=136.97 Aligned_cols=166 Identities=27% Similarity=0.528 Sum_probs=109.7 Template_Neff=10.800
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
+.....++|+++|++++|||+|++++..........++....+ .......+..+.+.+||++|++.+...+..++..++
T Consensus 3 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d 82 (206)
T 2BCG_Y 3 SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSH 82 (206)
T ss_dssp CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCS
T ss_pred cccceeEEEEEECCCCCCHHHHHHHHhcCCCCCCCccccceEEEEEEEEECCEEEEEEEEeCCCchHHHHHhHHHhcCCC
Confidence 4456778999999999999999999886654433322221111 112222334567889999998887777777888899
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
++++|+|+++..++..... +...+.. .....|+++|+||.|+........ .....++.. ....++
T Consensus 83 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~ilv~nK~D~~~~~~~~~------------~~~~~~~~~-~~~~~~ 148 (206)
T 2BCG_Y 83 GIIIVYDVTDQESFNGVKM-WLQEIDRYATSTVLKLLVGNKCDLKDKRVVEY------------DVAKEFADA-NKMPFL 148 (206)
T ss_dssp EEEEEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH------------HHHHHHHHH-TTCCEE
T ss_pred EEEEEEeCCCHHHHhHHHH-HHHHHHHHCCCCcEEEEEEeCcccCccccCCH------------HHHHHHHHH-CCCCEE
Confidence 9999999998776665533 3332221 223578899999999865321100 001111111 125678
Q sequence1 161 ECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
++|+.++.++.++|.++.+.+.
T Consensus 149 ~~S~~~~~~~~~~~~~l~~~~~ 170 (206)
T 2BCG_Y 149 ETSALDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988887664
##### No 110 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1Z2A_A Ras-related protein Rab-23; Rab GTPase, Rab23, Vesicular trafficking; HET: GDP; 1.9A {Mus musculus} SCOP: c.37.1.8
Probab=99.74 E-value=4.7e-22 Score=131.98 Aligned_cols=164 Identities=31% Similarity=0.497 Sum_probs=110.1 Template_Neff=11.800
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
....+|+++|.+++|||+|++++....+.....++.... ........+....+.+||++|++.+...+..+...+++++
T Consensus 3 ~~~~~i~~~G~~~~GKs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (168)
T 1Z2A_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCCCCCccceeEEEEEEEEECCEEEEEEEEeCCCcHHhHHhcHHHhcCCCEEE
Confidence 457899999999999999999998765543322221111 1222233344567889999999888777777888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
+|+|+++..++......+...... ....|+++++||.|+........ .......... ...++.+|+
T Consensus 83 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~ivv~~k~d~~~~~~~~~------------~~~~~~~~~~-~~~~~~~s~ 148 (168)
T 1Z2A_A 83 LVFSTTDRESFEAISSWREKVVAE-VGDIPTALVQNKIDLLDDSCIKN------------EEAEGLAKRL-KLRFYRTSV 148 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-HCSCCEEEEEECGGGGGGCSSCH------------HHHHHHHHHH-TCEEEECBT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHH-hCCCCEEEEEeCccCCCcccCCH------------HHHHHHHHHc-CCeEEEeeC
Confidence 999999876666554333333322 24689999999999876322100 0011111111 246788999
Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184)
+++.++.++|+++.+.+++
T Consensus 149 ~~~~~i~~~~~~l~~~~~~ 167 (168)
T 1Z2A_A 149 KEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp TTTBSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999998887754
##### No 111 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2YC4_C INTRAFLAGELLAR TRANSPORT PROTEIN 25, SMALL; TRANSPORT PROTEIN, CILIUM, IFT COMPLEX; 2.8A {CHLAMYDOMONAS REINHARDTII}
Probab=99.74 E-value=4.8e-22 Score=136.41 Aligned_cols=168 Identities=23% Similarity=0.302 Sum_probs=103.7 Template_Neff=11.700
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKD--QFPEVYVPTVFENY-VADIEVDG--KQVELALWDTAGLEDYDRLRPLSYP 78 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~--~~~~~~~~t~~~~~-~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~ 78 (184)
.....++|+++|++++|||+|++++... .+.....++....+ .......+ ..+.+.+||++|++.+...+..++.
T Consensus 16 ~~~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 95 (208)
T 2YC4_C 16 TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN 95 (208)
T ss_dssp SEEEEEEEEEESCGGGCHHHHHHHHHC-----------------CEEEEECTTSSEEEEEEEEESSSSHHHHHHTSTTCC
T ss_pred CccceeEEEEECCCCCCHHHHHHHHhcCCCccccccccceeeeEEEEEEECCCCCeEEEEEEEeCCCChHhHHHHHHHhc
Confidence 3456789999999999999999999875 33333332222111 11122222 2457889999998888777777888
Q sequence1 79 DTDVILMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIG 155 (184)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
.+|++++|+|+.+..++......+....... ....|+++|+||.|+...... ........++...+
T Consensus 96 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~v~~k~d~~~~~~~-----------~~~~~~~~~~~~~~ 164 (208)
T 2YC4_C 96 GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ-----------VRLDMAQDWATTNT 164 (208)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEEC---CCCSSC-----------CCHHHHHHHHHHTT
T ss_pred CCCEEEEEEeCCChHHHHhHHHHHHHHHHhCccCCCCceEEEEEeCCCCCChhhc-----------cCHHHHHHHHHhCC
Confidence 9999999999998776666543333222221 126889999999998753211 01112222333333
Q sequence1 156 AFGYMECSAKT-KDGVREVFEMATRAALQ 183 (184)
Q Consensus 156 ~~~~~~~s~~~-~~~i~~~~~~~~~~~~~ 183 (184)
+.++++|+++ +.++.+++.++...+++
T Consensus 165 -~~~~~~s~~~~~~~i~~~~~~l~~~~~~ 192 (208)
T 2YC4_C 165 -LDFFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -CEEEECC-CCTTSSTHHHHHHHHHHHHH
T ss_pred -CcEEEecCCCCCCCchHHHHHHHHHHHH
Confidence 5689999999 99999999998887653
##### No 112 #####
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>1Z22_A Ras-related protein Rab-23; Rab GTPase, Rab23, Vesicular transport; HET: GDP; 2.06A {Mus musculus} SCOP: c.37.1.8
Probab=99.74 E-value=4.9e-22 Score=132.10 Aligned_cols=164 Identities=31% Similarity=0.489 Sum_probs=103.2 Template_Neff=11.600
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
....+++++|.+++|||+|++++....+.....++.... ........+....+.+||++|++.+...+..++..+|+++
T Consensus 3 ~~~~~i~i~G~~~~GKs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (168)
T 1Z22_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCCCSE-------------EEEEECTTCSSCCHHHHHHHTTCCEEE
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCChhhHHhhhHHhcCCCEEE
Confidence 457899999999999999999998765443322221111 1222233344567889999998887777777788999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
+|+|+++..++......+..... .....|+++++||.|+........ .......... ...++.+|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~ivv~~k~d~~~~~~~~~------------~~~~~~~~~~-~~~~~~~s~ 148 (168)
T 1Z22_A 83 LVFSTTDRESFEAISSWREKVVA-EVGDIPTALVQNKIDLLDDSCIKN------------EEAEGLAKRL-KLRFYRTSV 148 (168)
T ss_dssp EEEETTBHHHHHTHHHHHHHHC-----SCCEEEEEECGGGGGGCSSCH------------HHHHHHHHHH-TCEEEECBT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHH-hCCCCCEEEEEeCCCCCccccCCH------------HHHHHHHHHh-CCCEEEeeC
Confidence 99999986666555433333332 224689999999999876321100 0011111111 246788999
Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184)
+++.++.++|+++...+++
T Consensus 149 ~~~~~i~~~~~~l~~~~~~ 167 (168)
T 1Z22_A 149 KEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp TTTBSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999998887754
##### No 113 #####
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>5JCZ_I Ras-related protein Rab-11A, Unconventional myosin-Va; myosin, complex, Rab, motor cargo; HET: EDO, GOL, BEF, GDP; 2.056A {Homo sapiens}
Probab=99.74 E-value=4.9e-22 Score=132.32 Aligned_cols=167 Identities=28% Similarity=0.427 Sum_probs=111.6 Template_Neff=12.600
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
...+.++|+++|+.++|||+|++++..........++....+ .......+....+.+||++|.+.+...+..+...+++
T Consensus 9 ~~~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 88 (179)
T 5JCZ_I 9 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVG 88 (179)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSCCCHHHHHHHHTTCCE
T ss_pred hcceeEEEEEECCCCCChHHHHHHHccCCCCCCCCceeEEEEEEEEEEECCEEEEEEEEeCCCChhhhhhcHHHhCCCcE
Confidence 346778999999999999999999987655432222211111 1122223345678899999988777777778888999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++|+++++..++......+...........|+++++||.|........ ......++.... ..++++
T Consensus 89 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~lv~~k~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~~ 155 (179)
T 5JCZ_I 89 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP------------TDEARAFAEKNG-LSFIET 155 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHTT-CEEEEC
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHHhCCCCCeEEEEEecccchhhcCCC------------HHHHHHHHHHcC-CcEEEe
Confidence 9999999886666555433333322222468999999999987632110 011111222222 468899
Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184)
|++++.++.++|.++.+.+++
T Consensus 156 s~~~~~~i~~~~~~l~~~~~~ 176 (179)
T 5JCZ_I 156 SALDSTNVEAAFQTILTEIYR 176 (179)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999887653
##### No 114 #####
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>3BBP_C Ras-related protein Rab-6A, GRIP and; Golgi complex GRIP domain; HET: GTP; 3.0A {Homo sapiens}
Probab=99.74 E-value=5e-22 Score=137.17 Aligned_cols=163 Identities=29% Similarity=0.447 Sum_probs=106.1 Template_Neff=10.900
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
.+..+|+++|++|+|||||++++..........+...... .......+....+.+||++|.+.+...+..++..+|+++
T Consensus 14 ~~~~~i~l~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~vi 93 (211)
T 3BBP_C 14 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAV 93 (211)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHTSCCCCSCCCCCSEEEEEEEEECSSSEEEEEEEEECCSSGGGTTHHHHHTTCSEEE
T ss_pred cceEEEEEECCCCCCHHHHHHHHccCCCCccCCCcceeEEEEEEEEeCCEEEEEEEEeCCCcHHHHHHhHHHccCCCEEE
Confidence 4678999999999999999999986654332222211111 111122233467899999998877777777788999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
+|+|+++..++......+...........|+++++||+|+....... .......+... ...++++|+
T Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~------------~~~~~~~~~~~-~~~~~~~S~ 160 (211)
T 3BBP_C 94 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVS------------IEEGERKAKEL-NVMFIETSA 160 (211)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGCTTCCSC------------HHHHHHHHHHT-TCEEEECBT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHHcCCCCEEEEEeeccccccccCCC------------HHHHHHHHHHh-CCeEEEeec
Confidence 99999987666665433333222223468999999999997532110 00011111111 246788999
Q sequence1 165 KTKDGVREVFEMATRAA 181 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~ 181 (184)
.++.++.++|.++...+
T Consensus 161 ~~~~~i~~l~~~l~~~l 177 (211)
T 3BBP_C 161 KAGYNVKQLFRRVAAAL 177 (211)
T ss_dssp TTTBTHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999998887765
##### No 115 #####
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>3T1T_A Gliding protein mglA (E.C.3.6.5.2); G domain containg protein, bacterial; HET: GDP; 1.9A {Thermus thermophilus}
Probab=99.74 E-value=5.1e-22 Score=135.17 Aligned_cols=165 Identities=27% Similarity=0.317 Sum_probs=107.1 Template_Neff=11.800
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV----------YVPTVFENYV-ADI-EVDGKQVELALWDTAGLEDYDR 71 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~----------~~~t~~~~~~-~~~-~~~~~~~~~~i~D~~g~~~~~~ 71 (184)
......+|+++|+.++|||+|++++........ ..++....+. ... ...+....+.+||++|++.+..
T Consensus 10 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 89 (198)
T 3T1T_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHHSCGGGBCCCEEEECSSCEEEEEEECCTTCCCGGGCEEEEEEEECCSCCSCSH
T ss_pred CCcccEEEEEECCCCCCHHHHHHHHhccCCcccCCceeccccccceeeeeEEEEeeecccCCeEEEEEEEeCCCCcccHH
Confidence 345678999999999999999999987653311 1111111111 111 1123456788999999988887
Q sequence1 72 LRPLSYPDTDVILMCFSIDS------PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPE 145 (184)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~------~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (184)
.+..++..+|++++|+|.++ ..++..... +...........|+++++||.|+...... .
T Consensus 90 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ilv~~k~D~~~~~~~--------------~ 154 (198)
T 3T1T_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE-NLAEYGLTLDDVPIVIQVNKRDLPDALPV--------------E 154 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHH-HHHHTTCCTTSSCEEEEEECTTSTTCCCH--------------H
T ss_pred HHHHHHccCCEEEEEEeCCchhhccCHHHHHHHHH-HHHHhCCCCCCCCEEEEEeCCCCCCCCCH--------------H
Confidence 88888889999999999987 333333322 22222112246899999999998652111 1
Q sequence1 146 EGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 146 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
....++.......++++|+.++.++.++|.++...+..
T Consensus 155 ~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~ 192 (198)
T 3T1T_A 155 MVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp HHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred HHHHHhCccCCeeEEEeeccCCCCHHHHHHHHHHHHHH
Confidence 11122222233678899999999999999998887653
##### No 116 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4QXA_A Ras-related protein Rab-9A, Small G; PH domain, Rab9A, RUTBC2, Rab; HET: GTP; 2.3A {Mus musculus}
Probab=99.74 E-value=5.1e-22 Score=135.73 Aligned_cols=169 Identities=31% Similarity=0.509 Sum_probs=109.8 Template_Neff=12.200
Q sequence1 2 AMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDT 80 (184)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 80 (184)
.+...+.++|+++|.+++|||+|++++..........++.... ....+...+....+.+||++|.+.+...+..++..+
T Consensus 2 ~~~~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~ 81 (208)
T 4QXA_A 2 MAGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGLERFRSLRTPFYRGS 81 (208)
T ss_dssp -----CEEEEEEEESTTSSHHHHHHHHHHCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCSGGGHHHHGGGTTTC
T ss_pred CCCcceEEEEEEECCCCCCHHHHHHHHhCCCCCccceeeeeeeEEEEEEEECCEEEEEEEEeCCCChhhhccchhHhcCC
Confidence 3556788999999999999999999998765433222221111 111222333456788999999888777788888899
Q sequence1 81 DVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
|++++|+++.+..++......+....... ....|+++|+||.|+....... .....++.....
T Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iilv~nk~D~~~~~~~~-------------~~~~~~~~~~~~ 148 (208)
T 4QXA_A 82 DCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKERQVST-------------EEAQAWCKDNGD 148 (208)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTSCEEEEEECTTCSSCSSCH-------------HHHHHHHHTTTC
T ss_pred CEEEEEeeCCChHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEeeCCcCccccCCH-------------HHHHHHHHHcCC
Confidence 99999999988765554433332222111 1367899999999987532111 111112222233
Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
+.++++|++++.++.++|.++...+.+
T Consensus 149 ~~~~~~s~~~~~~i~~~~~~l~~~~~~ 175 (208)
T 4QXA_A 149 YPYFETSAKDSTNVAAAFEEAVRRILA 175 (208)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCEEEeeCCCCccHHHHHHHHHHHHHh
Confidence 678899999999999999998877653
##### No 117 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1UKV_Y Secretory pathway GDP dissociation inhibitor/GTP-binding; GTPase, Hydrolase, GDP dissociation inhibitor; HET: GER, GDP; 1.5A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.73 E-value=6.2e-22 Score=136.30 Aligned_cols=166 Identities=25% Similarity=0.461 Sum_probs=109.7 Template_Neff=10.800
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
.....++|+++|.+++|||+|++++..........++....+ ......++....+.+||++|++.+...+..++..+++
T Consensus 4 ~~~~~~ki~l~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 83 (206)
T 1UKV_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCHHHHTTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHcCCCCCCCccceeeeeEEEEEEEECCEEEEEEEEeCCCCHHHHHhhHHHhcCCCE
Confidence 456778999999999999999999987654433222221111 1122233334678899999988777777777888999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++|+|+++..++..+...+...........|+++++||.|+....... ......++... ...++++
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~------------~~~~~~~~~~~-~~~~~~~ 150 (206)
T 1UKV_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVE------------YDVAKEFADAN-KMPFLET 150 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC------------HHHHHHHHHHT-TCCEEEC
T ss_pred EEEEEcCCCHHHHhHHHHHHHHHHHHCCCCcEEEEEEechhcCCCCCCC------------HHHHHHHHHHC-CCCEEEe
Confidence 9999999987777665433332222222356778999999987532110 01111111111 2568899
Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184)
|+.++.++.+++.++...+.
T Consensus 151 Sa~~~~~i~~~~~~i~~~~~ 170 (206)
T 1UKV_Y 151 SALDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999998887664
##### No 118 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3T1O_B Gliding protein mglA (E.C.3.6.5.2); G domain containing protein, bacterial; HET: GDP; 1.9A {Thermus thermophilus}
Probab=99.73 E-value=6.5e-22 Score=134.83 Aligned_cols=165 Identities=27% Similarity=0.317 Sum_probs=106.5 Template_Neff=11.600
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV----------YVPTVFENYV-ADI-EVDGKQVELALWDTAGLEDYDR 71 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~----------~~~t~~~~~~-~~~-~~~~~~~~~~i~D~~g~~~~~~ 71 (184)
...+..+|+++|+.++|||+|++++........ ..++....+. ..+ ...+....+.+||++|++.+..
T Consensus 10 ~~~~~~~i~l~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 89 (198)
T 3T1O_B 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp GTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCTTCCCCC-CEEEEEEEECCSCCCCSH
T ss_pred CCcceEEEEEECCCCCCHHHHHHHHHhcCCcccCCceecccccceeEEEEEEeEeeecccCCcEEEEEEEeCCCCcccHH
Confidence 345678999999999999999999987643321 1111111110 111 1123356789999999988887
Q sequence1 72 LRPLSYPDTDVILMCFSIDS------PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPE 145 (184)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~------~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (184)
.+..++..++++++|+|.++ ..++..... +...........|+++++||.|+...... .
T Consensus 90 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ilv~~k~d~~~~~~~--------------~ 154 (198)
T 3T1O_B 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE-NLAEYGLTLDDVPIVIQVNKRDLPDALPV--------------E 154 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHH-HHHHTTCCTTSSCEEEEEECTTCTTCCCH--------------H
T ss_pred HHHHHHccCCEEEEEEeCCchhhccCHHHHHHHHH-HHHHhCCCCCCCCEEEEEeCCCCCCCCCH--------------H
Confidence 78878889999999999996 333333322 22222112246899999999998652111 1
Q sequence1 146 EGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 146 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
....++.......++++|+.++.++.++|.++.+.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~ 192 (198)
T 3T1O_B 155 MVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp HHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred HHHHHhCccCCceEEEeecccCCCHHHHHHHHHHHHHH
Confidence 11122222233678899999999999999998887653
##### No 119 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3T1T_C Gliding protein mglA (E.C.3.6.5.2); G domain containg protein, bacterial; HET: MSE, GDP; 1.9A {Thermus thermophilus}
Probab=99.73 E-value=6.5e-22 Score=134.83 Aligned_cols=165 Identities=27% Similarity=0.317 Sum_probs=105.2 Template_Neff=11.600
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV----------YVPTVFENYV-ADI-EVDGKQVELALWDTAGLEDYDR 71 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~----------~~~t~~~~~~-~~~-~~~~~~~~~~i~D~~g~~~~~~ 71 (184)
...+..+|+++|+.++|||+|++++........ ..++....+. ..+ ...+....+.+||++|++.+..
T Consensus 10 ~~~~~~~i~l~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 89 (198)
T 3T1T_C 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHHSCGGGBCCCEEEECSSCEEEEEEECCSCC------CEEEEEEECCSCCSCSH
T ss_pred CCcceEEEEEECCCCCCHHHHHHHHHhcCCcccCCceecccccceeEEEEEEeEeeecccCCcEEEEEEEeCCCCcccHH
Confidence 345678999999999999999999987643321 1111111110 111 1123356789999999988887
Q sequence1 72 LRPLSYPDTDVILMCFSIDS------PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPE 145 (184)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~------~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (184)
.+..++..++++++|+|.++ ..++..... +...........|+++++||.|+...... .
T Consensus 90 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ilv~~k~d~~~~~~~--------------~ 154 (198)
T 3T1T_C 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE-NLAEYGLTLDDVPIVIQVNKRDLPDALPV--------------E 154 (198)
T ss_dssp HHHHHTTTCSEEEEEEECCGGGHHHHHHHHHHHHH-HHHTTTCCTTSSCEEEEEECTTSTTCCCH--------------H
T ss_pred HHHHHHccCCEEEEEEeCCchhhccCHHHHHHHHH-HHHHhCCCCCCCCEEEEEeCCCCCCCCCH--------------H
Confidence 78878889999999999996 333333322 22222112246899999999998652111 1
Q sequence1 146 EGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 146 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
....++.......++++|+.++.++.++|.++.+.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~ 192 (198)
T 3T1T_C 155 MVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp HHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred HHHHHhCccCCceEEEeecccCCCHHHHHHHHHHHHHH
Confidence 11122222233678899999999999999998887653
##### No 120 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4M9Q_B ARF-like GTPase (E.C.3.6.5.2); GTPase, G domain, Joubert Syndrome; HET: GNP, SO4; 2.5A {Chlamydomonas reinhardtii}
Probab=99.73 E-value=6.8e-22 Score=138.36 Aligned_cols=161 Identities=17% Similarity=0.251 Sum_probs=101.3 Template_Neff=9.800
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
.+.++|+++|.+++|||||++++.+..... ..++.... ..........+.+||++|...+...|..++..+|++++
T Consensus 2 ~~~~~I~l~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~---~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~ 77 (227)
T 4M9Q_B 2 PRKITIALLGLDNAGKTTLLNSIQGEVDRD-TTPTFGFN---STTLNEGKYKIEVFDLGGGKNIRGVWKKYLAEVHAIVY 77 (227)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHTTCCSCC-CCCCSSEE---EEEEEETTEEEEEEEECCSTTGGGGGGGTGGGCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHcCCCCCC-CCcccceE---EEEEecCCEEEEEEECCCCcchHHHHHHHHhhCCEEEE
Confidence 357899999999999999999887553221 12221111 11222335688999999998888888889999999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
|+|+++..++......+...+... ....|+++++||.|+............ .....+ .....++.+||
T Consensus 78 VvD~s~~~~~~~~~~~l~~~l~~~~~~~~pilvv~NK~Dl~~~~~~~~i~~~---------~~~~~~--~~~~~~~~~sa 146 (227)
T 4M9Q_B 78 VVDAADPGRFEESKMTMAEVLENQFMRDKPICIFANKQDLPTAAPAAEVVKG---------LGLATC--RNSHNVFPCTA 146 (227)
T ss_dssp EEETTCGGGHHHHHHHHHHHHHSGGGTTCCEEEEEECTTSTTCCCHHHHHHH---------TTTTSC--CSCEEEEECCS
T ss_pred EEeCCCccCHHHHHHHHHHHHhchhhcCCCEEEEEeCCCCCCCCCHHHHHHH---------cChhhc--CCccEEEECcC
Confidence 999988766665544444443322 236899999999999753221110000 000001 11246788888
Q sequence1 165 KTKDG------VREVFEMATRAA 181 (184)
Q Consensus 165 ~~~~~------i~~~~~~~~~~~ 181 (184)
..+.+ +.+.+.|+...+
T Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~i 169 (227)
T 4M9Q_B 147 KMPAGQDVDHRLRDGLKWLVGTV 169 (227)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHH
Confidence 87544 445566665544
##### No 121 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3GJ0_B GTP-binding nuclear protein Ran; G Protein, GDP, Acetylation, Cytoplasm; HET: GDP; 1.48A {Homo sapiens}
Probab=99.73 E-value=6.8e-22 Score=137.32 Aligned_cols=164 Identities=26% Similarity=0.446 Sum_probs=106.4 Template_Neff=11.100
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
+......+|+++|..++|||+|++++....+.....++..... .......+....+.+||++|+..+...+..++..+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 89 (221)
T 3GJ0_B 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp ---CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECC------CCHHHHTTCC
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCcCcccceeeeEEEEEEEeCCcEEEEEEEECCCCccccccchhhcccCc
Confidence 3456778999999999999999999887655332222221111 112222334568899999998888778888889999
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
++++|++.++..++......+.. +.......|+++++||.|+....... ....++...+ +.+++
T Consensus 90 ~vilv~d~~~~~s~~~~~~~~~~-i~~~~~~~~iilv~nk~D~~~~~~~~--------------~~~~~~~~~~-~~~~~ 153 (221)
T 3GJ0_B 90 CAIIMFDVTSRVTYKNVPNWHRD-LVRVCENIPIVLCGNKVDIKDRKVKA--------------KSIVFHRKKN-LQYYD 153 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHH-HHHHSTTCCEEEEEECTTSSSCSSCG--------------GGCCHHHHTT-CEEEE
T ss_pred EEEEEeeCCChHHHhcHHHHHHH-HHHHcCCCCEEEEEeCCccccchhhH--------------HHHHHHHHcC-CcEEE
Confidence 99999999987766665433333 32222478999999999997632110 0111122222 67899
Q sequence1 162 CSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~ 182 (184)
+|++++.|+.++|.++...+.
T Consensus 154 ~S~~~~~~i~~~~~~l~~~~~ 174 (221)
T 3GJ0_B 154 ISAKSNYNFEKPFLWLARKLI 174 (221)
T ss_dssp CBGGGTBTTHHHHHHHHHHHH
T ss_pred ccCCCCCChHHHHHHHHHHHh
Confidence 999999999999999887764
##### No 122 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4ILE_A ADP-ribosylation factor-like protein 8A; GTPase, MEMBRANE TRAFFICKING, TRANSPORT PROTEIN; HET: GDP; 2.676A {Homo sapiens}
Probab=99.73 E-value=6.9e-22 Score=133.73 Aligned_cols=164 Identities=20% Similarity=0.283 Sum_probs=107.3 Template_Neff=10.900
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
..+.++|+++|.+++|||||++++....+.....++.... ... .......+.+||++|+..+...+..++..+++++
T Consensus 19 ~~~~~~i~i~G~~~~GKtsl~~~l~~~~~~~~~~~t~~~~-~~~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii 95 (184)
T 4ILE_A 19 WKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFN-MRK--ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (184)
T ss_dssp HTSCCEEEEEESTTSSHHHHHHHHTTTCCEEEESSSTTCS-CEE--EEETTEEEEEEETTTCGGGHHHHHHHTTTCSCEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceE-EEE--EecCCEEEEEEeCCCCHHHHHHHHHHhcCCCEEE
Confidence 4567899999999999999999998766544333322111 111 1223467899999998877777777888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
+|+|+++..++......+....... ....|+++|+||+|+............ ........ ....++++|
T Consensus 96 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~s 165 (184)
T 4ILE_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEK---------MNLSAIQD-REICCYSIS 165 (184)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHH---------TTGGGCCS-SCEEEEECB
T ss_pred EEEecCCHHHHHHHHHHHHHHhcChhhCCCcEEEEEeCCCCCCCCCHHHHHHH---------cChhHhcC-CcEEEEEee
Confidence 9999988655544444344333221 236889999999999653211100000 00000111 124678899
Q sequence1 164 AKTKDGVREVFEMATRAA 181 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~ 181 (184)
++++.|+.++|+++.+.+
T Consensus 166 ~~~~~~i~e~~~~l~~~~ 183 (184)
T 4ILE_A 166 CKEKDNIDITLQWLIQHS 183 (184)
T ss_dssp TTTTBSHHHHHHHHHTTC
T ss_pred CCCCccHHHHHHHHHHcc
Confidence 999999999999987654
##### No 123 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2YC2_D INTRAFLAGELLAR TRANSPORT PROTEIN 25, SMALL; TRANSPORT PROTEIN, CILIUM, IFT COMPLEX; 2.588A {CHLAMYDOMONAS REINHARDTII}
Probab=99.73 E-value=7.4e-22 Score=135.46 Aligned_cols=168 Identities=23% Similarity=0.302 Sum_probs=83.7 Template_Neff=11.700
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKD--QFPEVYVPTVFENY-VADIEVDG--KQVELALWDTAGLEDYDRLRPLSYP 78 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~--~~~~~~~~t~~~~~-~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~ 78 (184)
.....++|+++|++++|||+|++++... .+.....++....+ .......+ ..+.+.+||++|.+.+...+..++.
T Consensus 16 ~~~~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 95 (208)
T 2YC2_D 16 TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN 95 (208)
T ss_dssp SEEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHhcCCCcccccCCCceeeEEEEEEEECCCCCeEEEEEEEeCCCchHHHHHHHHHhc
Confidence 3456789999999999999999999875 33333333222111 11122222 2457889999998888777888888
Q sequence1 79 DTDVILMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIG 155 (184)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
.+|++++|+|+.+..++.....++....... ....|+++|+||.|+...... ........++...+
T Consensus 96 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~piv~v~~k~d~~~~~~~-----------~~~~~~~~~~~~~~ 164 (208)
T 2YC2_D 96 GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ-----------VRLDMAQDWATTNT 164 (208)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------C-----------CCHHHHHHHHHHHT
T ss_pred CCCEEEEEEeCCCHHHHHhHHHHHHHHHHhCccCCCCceEEEEEeCCCCCchhhh-----------cCHHHHHHHHHhCC
Confidence 9999999999998776665543333222221 125889999999998753211 01122222333333
Q sequence1 156 AFGYMECSAKT-KDGVREVFEMATRAALQ 183 (184)
Q Consensus 156 ~~~~~~~s~~~-~~~i~~~~~~~~~~~~~ 183 (184)
+.++.+|+.+ +.++.+++.++.+.+++
T Consensus 165 -~~~~~~s~~~~~~~i~~~~~~l~~~~~~ 192 (208)
T 2YC2_D 165 -LDFFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -CEEEECCC------CCHHHHHHHHHHHH
T ss_pred -CcEEEecCCCCCCCchHHHHHHHHHHHH
Confidence 5689999999 99999999998887653
##### No 124 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6VBV_3 Bardet-Biedl syndrome 18 protein, BBS1; Cilia, ciliopathy, complex, membrane-protein transport; HET: GTP; 3.5A {Bos taurus}
Probab=99.73 E-value=7.7e-22 Score=133.46 Aligned_cols=166 Identities=15% Similarity=0.222 Sum_probs=107.0 Template_Neff=11.300
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
..+.++|+++|.+++|||||++++........ ..++..... . ........+.+||++|++.+...+..++..++++
T Consensus 14 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~t~~~~~-~--~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~v 90 (186)
T 6VBV_3 14 KKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQDIVPTIGFSI-Q--KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAI 90 (186)
T ss_dssp ---CEECEEECCTTSSHHHHHHTTSCTTTCCSCCCCCCSCCC-E--EEECSSCEEEECCCCCCGGGCGGGGGGGTTCSCE
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHhccCCCCCCCCCCcceEEE-E--EEEcCCeEEEEEECCCChhhHHHHHHHhhhCCEE
Confidence 45678999999999999999999976543222 222211111 1 1223346789999999988877888888899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
++|+|+.+..++......+....... ....|+++++||+|+...... ....... ....... ..+.++
T Consensus 91 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vivv~nK~D~~~~~~~-~~~~~~~--------~~~~~~~-~~~~~~ 160 (186)
T 6VBV_3 91 IFVIDSSDKLRMVVAKEELRTLLNHPDIKHRRIPILFFANKMDLRDALTS-VKVSQLL--------CLEDIKD-KPWHIC 160 (186)
T ss_dssp EEEEETTCSSTHHHHHHHHHHHHTSTTTTTSCCCEEEEEECCSSTTCCCH-HHHHHHH--------TTTSCCS-SCEEEE
T ss_pred EEEEECCChhhHHHHHHHHHHHHcCcchhcCCCcEEEEEeCCCccccCCH-HHHHHHc--------CchhhCC-CCeEEE
Confidence 99999998765554433333333221 125799999999999763211 1110000 0000011 125678
Q sequence1 161 ECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
.+|++++.|+.++|+++.+.+.+
T Consensus 161 ~~sa~~~~~i~~~~~~l~~~i~~ 183 (186)
T 6VBV_3 161 ASDAIKGEGLQEGVDWLQDQIQS 183 (186)
T ss_dssp EECSSSCCSHHHHHHHHHHHHHC
T ss_pred EccCCCCCCHHHHHHHHHHHHHh
Confidence 89999999999999999887643
##### No 125 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3DOE_A ADP-ribosylation factor-like protein 2, ADP-ribosylation; ADP-ribosylation factor-like 2, binder of; HET: GTP; 2.25A {Homo sapiens}
Probab=99.73 E-value=8.2e-22 Score=134.41 Aligned_cols=165 Identities=15% Similarity=0.217 Sum_probs=107.3 Template_Neff=10.500
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
......+|+++|+.++|||||++++........ .++.... ........+.+.+||++|+..+...+..++..++++
T Consensus 12 ~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~-~~t~~~~---~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~i 87 (192)
T 3DOE_A 12 QKERELRLLMLGLDNAGKTTILKKFNGEDIDTI-SPTLGFN---IKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGL 87 (192)
T ss_dssp CCTTEEEEEEECSTTSSHHHHHHHHHTCCCSSC-CCCSSEE---EEECCBTTBEEEEEEECCCGGGGGGGGGGCTTCSEE
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHcCCCCCCC-CcccceE---EEEEEECCEEEEEEECCCChhhHHHHHHHhhcCCEE
Confidence 345678999999999999999998865433211 1111111 111223346788999999988877788888899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
++++|+++..++......+...... .....|+++++||.|+...... ...... . ....... ..+.++.+
T Consensus 88 i~vvd~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~-------~-~~~~~~~-~~~~~~~~ 157 (192)
T 3DOE_A 88 IWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSS-NAIREV-------L-ELDSIRS-HHWCIQGC 157 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-HHHHHG-------G-GGGGCCS-SCEEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhchhhcCCEEEEEEeCCCCCCCCCH-HHHHHH-------c-cchhhhc-CceEEEEc
Confidence 9999999877766654434433322 1235799999999999753211 000000 0 0000011 12567889
Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184)
|++++.|+.++|.++...+.
T Consensus 158 Sa~~~~~i~~~~~~l~~~~~ 177 (192)
T 3DOE_A 158 SAVTGENLLPGIDWLLDDIS 177 (192)
T ss_dssp BTTTTBTHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999887653
##### No 126 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2WKP_A NPH1-1, RAS-RELATED C3 BOTULINUM TOXIN; TRANSFERASE, CELL ADHESION, GTPASE, SMALL; HET: GTP, FMN; 1.9A {AVENA SATIVA, HOMO SAPIENS}
Probab=99.73 E-value=8.9e-22 Score=143.96 Aligned_cols=179 Identities=57% Similarity=0.984 Sum_probs=119.9 Template_Neff=11.800
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
....++++++|.+++|||||++++..........++............+....+.+||+||...+...+..++..+++++
T Consensus 152 ~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 231 (332)
T 2WKP_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred HHHhHeeeeecCCcCcchHHHHHHhcCCCCCCCCCCCceeEEEEEEECCEEEEEEEEeCCCchhHHhcchhhhCCCCEEE
Confidence 35567899999999999999999987755433333322222222233345678899999999877777777888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
+|+|++...++......+...+.......|+++++||.|+.........................++...+...++.+|+
T Consensus 232 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 311 (332)
T 2WKP_A 232 ICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEEETTCHHHHHHCCCCCHHHHHHHCTTCCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEeCCChHHHHHHHHHHHHHHHHHCCCCCEEEEEecccCCCcccchHHHHHHHhcccCHHHHHHHHHHhCCCcEEEeec
Confidence 99999987666555444554444333568999999999998643221111111111111222222333333467889999
Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184)
+++.|+.++++++.+.+++
T Consensus 312 ~~~~gi~~~~~~i~~~~~~ 330 (332)
T 2WKP_A 312 LTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHhC
Confidence 9999999999999887764
##### No 127 #####
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>1Z6Y_A ADP-ribosylation factor-like protein 5; GDP-Binding, Membrane Trafficking, Structural Genomics; HET: GDP; 2.4A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=9.5e-22 Score=132.30 Aligned_cols=165 Identities=19% Similarity=0.286 Sum_probs=105.9 Template_Neff=11.200
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
...+..+|+++|+.++|||||++++......... ++.... ...... ....+.+||++|++.+...+..++..++++
T Consensus 12 ~~~~~~~i~i~G~~~~GKSsl~~~l~~~~~~~~~-~~~~~~-~~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~i 87 (179)
T 1Z6Y_A 12 FNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSN-VEEIVI--NNTRFLMWDIGGQESLRSSWNTYYTNTEFV 87 (179)
T ss_dssp HTTSCEEEEEEEETTSSHHHHHHHTTTTSCEEEE-ECSSSS-CEEEEE--TTEEEEEEEESGGGTTCC----CCTTCCEE
T ss_pred cCCCceEEEEEcCCCCChHHHHHHHhcCCccccc-Cccccc-eEEEEE--CCEEEEEEECCCChhhHHHHHHhcccCCEE
Confidence 3466789999999999999999999876553321 111111 111222 245788999999988888888888999999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
++|+|.++..++......+...... .....|+++++||+|+...... ........ ..........++.+
T Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~---------~~~~~~~~~~~~~~ 157 (179)
T 1Z6Y_A 88 IVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV-AEISQFLK---------LTSIKDHQWHIQAC 157 (179)
T ss_dssp EEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH-HHHHHHTT---------GGGCCSSCEEEEEC
T ss_pred EEEEeCCChHHHHHHHHHHHHHHcChhhhcCcEEEEEeCCCCCcCCCH-HHHHHHhC---------CccccCCCeEEEEc
Confidence 9999999866555554444444332 1236899999999999763211 11111000 00001122568889
Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184)
|++++.|+.++|+++.+.+.
T Consensus 158 S~~~~~gi~~~~~~l~~~~~ 177 (179)
T 1Z6Y_A 158 CALTGEGLCQGLEWMMSRLK 177 (179)
T ss_dssp BTTTTBTHHHHHHHHHTC--
T ss_pred cCCCCccHHHHHHHHHhhhc
Confidence 99999999999999988764
##### No 128 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6O62_A Ras-related protein SEC4; G-PROTEIN, RAB, GDP, P-LOOP, GTPASE; HET: GDP; 1.88A {Candida albicans (strain SC5314 / ATCC MYA-2876)}
Probab=99.72 E-value=9.8e-22 Score=132.01 Aligned_cols=165 Identities=28% Similarity=0.527 Sum_probs=107.6 Template_Neff=12.100
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
....++|+++|..++|||||++++..........++..... .......+....+.+||++|...+...+..++..++++
T Consensus 11 ~~~~~~i~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 90 (184)
T 6O62_A 11 YDMIMKLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGI 90 (184)
T ss_dssp CSEEEEEEEECCTTSSHHHHHHHHHTCCCC-------CCEEEEEEEEETTEEEEEEEEECSSSCCTTCCCHHHHSSCSEE
T ss_pred ccceEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChHHHhhhHHHhccCCEE
Confidence 35678999999999999999999986654322222111111 11122223356788999999887777777888889999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|+|+++..++......+...........|+++++||.|+....... ......++...+ ..++++|
T Consensus 91 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s 157 (184)
T 6O62_A 91 VLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCDDEVNRQVS------------KEQGQELAAKLN-VPFLEAS 157 (184)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCCTTCCSC------------HHHHHHHHHHHT-CCEEECB
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEeCCCCcccccCC------------HHHHHHHHHHhC-CCEEEcc
Confidence 999999987666555433333332222357899999999987642110 011111222222 5688999
Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184)
+.++.++.+++.++...+.
T Consensus 158 ~~~~~~v~~~~~~l~~~~~ 176 (184)
T 6O62_A 158 AKSNENVDSIFYELASIIQ 176 (184)
T ss_dssp TTTTBTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999988877654
##### No 129 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3IHW_A CENTG3; ras, centaurin, gtpase, Structural Genomics; 1.92A {Homo sapiens}
Probab=99.72 E-value=9.9e-22 Score=132.79 Aligned_cols=163 Identities=19% Similarity=0.292 Sum_probs=108.0 Template_Neff=11.200
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
.....+|+++|.+++|||||++++....+.....++. ..+......+...+.+.+||++|++.+. ++..+++++
T Consensus 17 ~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~d~~g~~~~~-----~~~~~~~~i 90 (184)
T 3IHW_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCCC-CceEEEEEECCEEEEEEEEcCCCChHHh-----heecCCEEE
Confidence 4567899999999999999999998765543333322 1222233334456778889999987664 567889999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
+|+|+++..++......+....... ....|+++|+||.|+...... .. .......++.......++++|
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~ilv~~k~d~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~~~S 160 (184)
T 3IHW_A 91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPR--VI--------DDSRARKLSTDLKRCTYYETC 160 (184)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCC--CS--------CHHHHHHHHHHTTTCEEEEEB
T ss_pred EEccCCCHHHHHHHHHHHHHHHhhcCCCCCCEEEEeehhhhccCCCc--cc--------CHHHHHHHHHHhcCCeEEEec
Confidence 9999998776666543333332221 136889999999998652111 00 011111222222236788999
Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184)
++++.++.++|.++.+.+.+
T Consensus 161 ~~~~~~i~~~~~~l~~~~~~ 180 (184)
T 3IHW_A 161 ATYGLNVERVFQDVAQKVVA 180 (184)
T ss_dssp TTTTBTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999998887653
##### No 130 #####
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>5KUT_B Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GDP; 1.693A {Homo sapiens}
Probab=99.72 E-value=1e-21 Score=133.55 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=107.9 Template_Neff=10.700
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
......+|+++|.+++|||+|++++....+.....++....+ ...+...+....+.+||++|.. ..+..++..+|+
T Consensus 5 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~d~ 81 (189)
T 5KUT_B 5 TQRSVLLCKVVGACGVGKSAFLQAFLGRGLGHQDTREQPPGYAIDTVQVNGQEKYLILCEVGTDG---LLATSLDATCDV 81 (189)
T ss_dssp CSCCEEEEEEEECTTSSHHHHHHHHTTCCTTCC-CCSSCTTEEEEEEEETTEEEEEEEEEEECSG---GGGTSCCCCSSE
T ss_pred cccceEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCCCceEEEEEEECCEEEEEEEEeeCCCc---chhHhHhcCCCE
Confidence 345678999999999999999999987765443222222221 2233344555778899998864 345566788999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYME 161 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 161 (184)
+++|+|++++.++.....++..... ....|+++++||+|+...... .......++...+. ..+++
T Consensus 82 vi~v~d~~~~~s~~~l~~~~~~~~~--~~~~p~iiv~nk~D~~~~~~~------------~~~~~~~~~~~~~~~~~~~~ 147 (189)
T 5KUT_B 82 ACLMFDGSDPKSFAHCASVYKHHYM--DGQTPCLFVSSKADLPEGVAV------------SGPSPAEFCRKHRLPAPVPF 147 (189)
T ss_dssp EEEEEETTCTTHHHHHHHHHHHHTT--TSSSCEEEEEECTTSCCCCCS------------SCCCHHHHHHHTTCCCCEEC
T ss_pred EEEEeeCCCHHHHHHHHHHHHHhhc--CCCCCEEEEEeCCCCCCCCCC------------CCccHHHHHHHcCCCCCeeE
Confidence 9999999988777765443333222 247899999999998752211 01111122222222 34788
Q sequence1 162 CSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~ 182 (184)
+|+++++|+.++|.++...++
T Consensus 148 ~s~~~~~~i~~~~~~l~~~~~ 168 (189)
T 5KUT_B 148 SCAGPAEPSTTIFTQLATMAA 168 (189)
T ss_dssp CCCSSSCCCCHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999887764
##### No 131 #####
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>6HUF_H Ras-related protein Rab-27A; GTPase, Exocytosis, Vesicle transport; HET: GNP, MG; 2.82A {Homo sapiens}
Probab=99.72 E-value=1.1e-21 Score=131.94 Aligned_cols=166 Identities=28% Similarity=0.449 Sum_probs=108.4 Template_Neff=11.800
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
....++++++|.+++|||++++++....+.....++..... .......+....+.+||++|++.+...+..++..++++
T Consensus 6 ~~~~~~i~i~G~~~~GKst~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~ 85 (182)
T 6HUF_H 6 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKTIYRNDKRIKLQLWDTAGLERFRSLTTAFFRDAMGF 85 (182)
T ss_dssp --CEEEEEEECSTTSCHHHHHHHHHHSSCCCCCCCCCSCCEEEEEECSSSSCEEEEEECCCTTCSCTTCSSSHHHHCSEE
T ss_pred cceEEEEEEECCCCCCHHHHHHHHhCCCCCccccceeeEEEEEEEEEECCEEEEEEEEeCCCCHHHHHhhHHHhcCCCEE
Confidence 35688999999999999999999987655433222221111 11222233456788999999988877888888899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
++|+|+.+..++......+....... ....|+++++||.|........ .......+...+ ..++.+
T Consensus 86 v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vivv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~ 152 (182)
T 6HUF_H 86 LLLFDLTNEESFLNVRNWISQLKTHAYSENPDIVLCGNKSDLEDERVVA------------AAEARQLAEHYG-IPYFET 152 (182)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSSSSSCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHHT-CCEEEC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCCCcccccCC------------HHHHHHHHHHhC-CCEEEe
Confidence 99999987655555433222222211 2357899999999987532110 011111122222 568899
Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184)
|+.++.++.++|.++.+.+.+
T Consensus 153 s~~~~~~v~~~~~~l~~~~~~ 173 (182)
T 6HUF_H 153 SAANGTNISQAIEMLLDLIMK 173 (182)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999888776543
##### No 132 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6HUF_P Ras-related protein Rab-27A; GTPase, Exocytosis, Vesicle transport; HET: GNP, MG; 2.82A {Homo sapiens}
Probab=99.72 E-value=1.1e-21 Score=131.94 Aligned_cols=166 Identities=28% Similarity=0.449 Sum_probs=108.4 Template_Neff=11.800
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
....++++++|.+++|||++++++....+.....++..... .......+....+.+||++|++.+...+..++..++++
T Consensus 6 ~~~~~~i~i~G~~~~GKst~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~ 85 (182)
T 6HUF_P 6 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKTIYRNDKRIKLQLWDTAGLERFRSLTTAFFRDAMGF 85 (182)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCCCCSCCEEEEEECSSSSCEEEEEECCCTTCSCTTCSSSHHHHCSEE
T ss_pred cceEEEEEEECCCCCCHHHHHHHHhCCCCCccccceeeEEEEEEEEEECCEEEEEEEEeCCCCHHHHHhhHHHhcCCCEE
Confidence 35688999999999999999999987655433222221111 11222233456788999999988877888888899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
++|+|+.+..++......+....... ....|+++++||.|........ .......+...+ ..++.+
T Consensus 86 v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vivv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~ 152 (182)
T 6HUF_P 86 LLLFDLTNEESFLNVRNWISQLKTHAYSENPDIVLCGNKSDLEDERVVA------------AAEARQLAEHYG-IPYFET 152 (182)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSSSSSCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHHT-CCEEEC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCCCcccccCC------------HHHHHHHHHHhC-CCEEEe
Confidence 99999987655555433222222211 2357899999999987532110 011111122222 568899
Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184)
|+.++.++.++|.++.+.+.+
T Consensus 153 s~~~~~~v~~~~~~l~~~~~~ 173 (182)
T 6HUF_P 153 SAANGTNISQAIEMLLDLIMK 173 (182)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999888776543
##### No 133 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2MMG_A GTP-binding nuclear protein Ran; G-protein, nucleotide binding, GTP binding; NMR {Homo sapiens}
Probab=99.72 E-value=1.1e-21 Score=135.94 Aligned_cols=165 Identities=26% Similarity=0.482 Sum_probs=112.8 Template_Neff=11.000
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
+......+|+++|..++|||+|++++..........++..... .......+....+.+||++|+..+...+..++..++
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 84 (216)
T 2MMG_A 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 84 (216)
T ss_dssp TCSSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSSSCSSGGGHHHHTTCC
T ss_pred CCCcccEEEEEECCCCCCHHHHHHHHhcCCCCcCcccCceeEEEEEEEEeCCceEEEEEEeCCCchhhcccchhhccCCc
Confidence 3456678999999999999999999887655433222221111 112223334568899999998877777888888999
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
++++|++.++..++..... |...+.......|+++|+||.|+....... ....++... ...+++
T Consensus 85 ~vi~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~--------------~~~~~~~~~-~~~~~~ 148 (216)
T 2MMG_A 85 CAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDRKVKA--------------KSIVFHRKK-NLQYYD 148 (216)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHHCSCCEEEEEECTTSSSCSSCT--------------TTCCHHHHH-TCEEEE
T ss_pred EEEEEEeCCChHHhhcHHH-HHHHHHHHcCCCCEEEEEecccccccccch--------------hHHHHHHHc-CCcEEE
Confidence 9999999998766665533 333332222478999999999987532110 001112222 267899
Q sequence1 162 CSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
+|++++.++.++|.++.+.+.+
T Consensus 149 ~S~~~~~~i~~~~~~l~~~~~~ 170 (216)
T 2MMG_A 149 ISAKSNYNFEKPFLWLARKLIG 170 (216)
T ss_dssp CBTTTTBTTTHHHHHHHHHHHT
T ss_pred eeccCCCChHHHHHHHHHHHhC
Confidence 9999999999999998887654
##### No 134 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>5KUT_A Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GDP; 1.693A {Homo sapiens}
Probab=99.72 E-value=1.1e-21 Score=133.33 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=108.4 Template_Neff=10.800
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
......+|+++|.+++|||+|++++....+.....++....+ ...+...+....+.+||++|.. ..+..++..+|+
T Consensus 5 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~d~ 81 (189)
T 5KUT_A 5 TQRSVLLCKVVGACGVGKSAFLQAFLGRGLGHQDTREQPPGYAIDTVQVNGQEKYLILCEVGTDG---LLATSLDATCDV 81 (189)
T ss_dssp CSCSEEEEEEEECTTSSHHHHHHHHTTCCSSCCCSTTSCTTEEEEEEEETTEEEEEEEEEEECSG---GGGTSCCCCSSE
T ss_pred cccccEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCCCceEEEEEEECCEEEEEEEEeeCCCc---chhHhHhcCCCE
Confidence 345678999999999999999999987765443222222221 2233344555778899998864 345566788999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYME 161 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 161 (184)
+++|+|+++..++.....++..... ....|+++++||.|+...... .......++...+. ..+++
T Consensus 82 vi~v~d~~~~~s~~~l~~~~~~~~~--~~~~~~iiv~~k~D~~~~~~~------------~~~~~~~~~~~~~~~~~~~~ 147 (189)
T 5KUT_A 82 ACLMFDGSDPKSFAHCASVYKHHYM--DGQTPCLFVSSKADLPEGVAV------------SGPSPAEFCRKHRLPAPVPF 147 (189)
T ss_dssp EEEEEETTCTTHHHHHHHHHHHHTT--TSSSCEEEEEECTTSCCCCCS------------SSCCHHHHHHHTTCCCCEEC
T ss_pred EEEEeeCCCHHHHHHHHHHHHHhhc--CCCCCEEEEEeCCCCCCCCCC------------CCccHHHHHHHcCCCCCeEE
Confidence 9999999987777665433333222 247899999999998753211 01111122222222 35788
Q sequence1 162 CSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~ 182 (184)
+|+++++|+.++|.++...++
T Consensus 148 ~s~~~~~~i~~~~~~l~~~~~ 168 (189)
T 5KUT_A 148 SCAGPAEPSTTIFTQLATMAA 168 (189)
T ss_dssp CCCSSSCCCCHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999888764
##### No 135 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2X77_B ADP-RIBOSYLATION FACTOR; GTP-BINDING PROTEIN, SMALL GTPASE, NUCLEOTIDE-BINDING; HET: GDP; 2.1A {LEISHMANIA MAJOR}
Probab=99.72 E-value=1.2e-21 Score=133.26 Aligned_cols=165 Identities=19% Similarity=0.268 Sum_probs=100.9 Template_Neff=10.700
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
...+.++|+++|++++|||||++++........ .++....+ . ........+.+||++|...+...+..++..+|++
T Consensus 18 ~~~~~~~i~~~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~-~--~~~~~~~~~~~~d~~G~~~~~~~~~~~~~~~d~i 93 (189)
T 2X77_B 18 PADRKIRVLMLGLDNAGKTSILYRLHLGDVVTT-VPTVGVNL-E--TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAV 93 (189)
T ss_dssp CSSSCEEEEEEEETTSSHHHHHHHTCSSCCEEC-------CC-E--EEEETTEEEEECEECC---------CTTTTCCEE
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHhcCCCccc-CCccceEE-E--EEEECCEEEEEEECCCCcchHHHHHHhcCCCCEE
Confidence 346778999999999999999999986654321 11111111 1 1222346788999999988887888888899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
++|+|.+++.++......+...+... ....|+++++||+|+....... .... .. ..... ....+.++.+
T Consensus 94 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vilv~nK~D~~~~~~~~-~~~~----~~----~~~~~-~~~~~~~~~~ 163 (189)
T 2X77_B 94 IYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEA-EIAE----QL----GVSSI-MNRTWTIVKS 163 (189)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSSSCCCHH-HHHH----HT----TCTTC-CSSCEEEEEC
T ss_pred EEEEECCChHHHHHHHHHHHHHHccHHhcCCEEEEEEECCCCCCCCCHH-HHHH----Hh----CChhh-cCCCEEEEEC
Confidence 99999998776665544444433322 2357899999999997632111 1100 00 00000 0112468889
Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184)
|+.++.|+.+++.++.+.+.
T Consensus 164 s~~~~~~v~~~~~~l~~~~~ 183 (189)
T 2X77_B 164 SSKTGDGLVEGMDWLVERLR 183 (189)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999887664
##### No 136 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2Y8E_A RAB-PROTEIN 6; HYDROLASE, NUCLEOTIDE BINDING, GTP BINDING; HET: SO4, GNP; 1.39A {DROSOPHILA MELANOGASTER}
Probab=99.72 E-value=1.2e-21 Score=131.37 Aligned_cols=165 Identities=28% Similarity=0.426 Sum_probs=109.1 Template_Neff=11.800
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
....++|+++|+.|+|||+|++++..........++.... .............+.+||++|.+.+...+..++..++++
T Consensus 11 ~~~~~~i~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 90 (179)
T 2Y8E_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CcccEEEEEECCCCCChHHHHHHHhcCCCCcCccceeEEEEEEEEEEECCEEEEEEEEeCCCChHHHhhhHHHccCCCEE
Confidence 3567899999999999999999998765433222211111 111122233456789999999887777777778899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|+|.++..++......+...........|+++++||.|+....... .......+...+ ..++++|
T Consensus 91 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s 157 (179)
T 2Y8E_A 91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS------------TEEGERKAKELN-VMFIETS 157 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSC------------HHHHHHHHHHHT-CEEEEEB
T ss_pred EEEEeCCChHHHHHHHHHHHHHHHHcCCCCEEEEEEecccCCCccCCC------------HHHHHHHHHHhC-CcEEEEe
Confidence 999999887666555443333322222468999999999997642110 011111122222 5688999
Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184)
+.++.++.++|+++...+.
T Consensus 158 ~~~~~~~~~~~~~l~~~~~ 176 (179)
T 2Y8E_A 158 AKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp TTTTBSHHHHHHHHHHTCC
T ss_pred cCCCCCHHHHHHHHHHHcc
Confidence 9999999999998887653
##### No 137 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4CZ2_C RAS-RELATED PROTEIN RAB-32, ANKYRIN REPEAT; SIGNALING PROTEIN, VARP, RAB-EFFECTOR, RAB; HET: MSE, GCP; 2.97A {HOMO SAPIENS}
Probab=99.72 E-value=1.2e-21 Score=136.46 Aligned_cols=167 Identities=22% Similarity=0.364 Sum_probs=109.9 Template_Neff=11.600
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDG-KQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
.....++|+++|.+++|||+|++++....+.....++..... .......+ ....+.+||++|++.+...+..++..+|
T Consensus 26 ~~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 105 (230)
T 4CZ2_C 26 TREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGLERFGNMTRVYYKEAM 105 (230)
T ss_dssp -CEEEEEEEEEESTTSSHHHHHHHHHHCCCCSSCCCCCSEEEEEEEECCSSSCEEEEEEEEECGGGGGTTCHHHHHTTCC
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHccCCCcccCcceeeEEEEEEeecCCCCeEEEEEEeCCCcccchhhhHHHhhcCc
Confidence 345678999999999999999999987755433222221111 11111211 2267899999999888777888888999
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
++++|+|+.+..++......+..+.... ....|+++|+||.|+...... ...+...+.......
T Consensus 106 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ii~v~~k~D~~~~~~~------------~~~~~~~~~~~~~~~ 173 (230)
T 4CZ2_C 106 GAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLANKCDQNKDSSM------------SPSQMDQFCKEHGFA 173 (230)
T ss_dssp EEEEEEETTCTHHHHTHHHHHHHHHTTCCCTTSSCCCEEEEEECTTCCC----------------CHHHHHHHHHHHTCS
T ss_pred EEEEEEeCCCchhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEeCCCCCCCCCC------------CHHHHHHHHHHcCCC
Confidence 9999999998766665543333222111 236889999999998753211 011112222233335
Q sequence1 158 GYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
.++++|+.++.++.+++.++.+.+.
T Consensus 174 ~~~~~s~~~~~~i~~l~~~l~~~~~ 198 (230)
T 4CZ2_C 174 GWFETSAKDNINIEEAARFLVEKML 198 (230)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred cEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 7889999999999999999888764
##### No 138 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2BME_A RAS-RELATED PROTEIN RAB4A (E.C.3.6.5.2); GTP-BINDING PROTEIN, VESICULAR TRANSPORT, ENDOCYTOSIS; HET: GNP, TRS; 1.57A {HOMO SAPIENS} SCOP: c.37.1.8
Probab=99.72 E-value=1.2e-21 Score=132.33 Aligned_cols=167 Identities=29% Similarity=0.409 Sum_probs=110.1 Template_Neff=11.500
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
......+|+++|.+++||||+++++..........++....+ ............+.+||++|.+.+...+..++..+++
T Consensus 6 ~~~~~~ki~i~G~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 85 (186)
T 2BME_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccceeEEEEEeCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCChhhHhhhHHHhcCCCE
Confidence 345778999999999999999999987654332222211111 1112223345678899999988887778888889999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++|+|+++..++......+...........|+++++||.|+....... .......+... ...++++
T Consensus 86 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~k~d~~~~~~~~------------~~~~~~~~~~~-~~~~~~~ 152 (186)
T 2BME_A 86 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVT------------FLEASRFAQEN-ELMFLET 152 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC------------HHHHHHHHHHT-TCEEEEC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEeCCcCcCCCcCC------------HHHHHHHHHHC-CCeEEEe
Confidence 9999999987666555433322222222468999999999986532110 00111111111 2467889
Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184)
|+.++.++.++++++++.+.+
T Consensus 153 s~~~~~~i~~~~~~~~~~~~~ 173 (186)
T 2BME_A 153 SALTGENVEEAFVQCARKILN 173 (186)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999988876643
##### No 139 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>5C1S_A Small GTPase EhRabX3; P-loop containing nucleotide triphosphate hydrolases; HET: MSE, GDP; 3.1A {Entamoeba histolytica}
Probab=99.72 E-value=1.2e-21 Score=146.96 Aligned_cols=161 Identities=19% Similarity=0.319 Sum_probs=103.9 Template_Neff=10.800
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
....+++++|.+++|||+|++++........... ...............+.+||+||++.+......++..+|++++
T Consensus 220 ~~~~~i~~~g~~~~gks~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~l~ 296 (391)
T 5C1S_A 220 DIKIRMLMVGDQNVGKTTFIRKFALQDPTGHDFM---NAITTRFEMEKIKYEIIMIDWGFYNKLLQTNPAISRTIEAILI 296 (391)
T ss_dssp SCEEEEEECCCHHHHHHC---CCCCSCSSCSTTC---CEEEECCC-CCCCCEEEEECHHHHHHTTTTCSSGGGSCCEEEE
T ss_pred ccceeEEEeCCCCCCceeeeeeeccCCCCCccce---eeeeeEeeeccEEEEEEEEechHHHHHHhhhhHHhCCCCEEEE
Confidence 4567899999999999999999886643211110 0001111222334578899999998887777778889999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184)
|+|+++..++......|...+....+..|+++|+||+|+...... .......++...+ ..++++||+
T Consensus 297 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~nK~D~~~~~~v------------~~~~~~~~~~~~~-~~~~~~Sa~ 363 (391)
T 5C1S_A 297 VYDITNEESFQNIHRKYYPLINNKFSDVAGVIVGYKTDLEAQRKI------------TMGDALTLADWLG-YKYVEMSSK 363 (391)
T ss_dssp CCCSSCCCSSTTHHHHHTTCSSCCEECC----CCCCHHHHHTTCS------------SCCBCSSCCCCST-TTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHccCCCCeEEEEEcCchhhhcCCC------------CHHHHHHHHHHHC-CEEEEecCC
Confidence 999999888877655555555444456899999999999763211 1112222333333 578999999
Q sequence1 166 TKDGVREVFEMATRAAL 182 (184)
Q Consensus 166 ~~~~i~~~~~~~~~~~~ 182 (184)
++.|++++|.++.+.+.
T Consensus 364 ~~~~v~~l~~~i~~~~~ 380 (391)
T 5C1S_A 364 DTEDHSSIIKALAHSIR 380 (391)
T ss_dssp HHHHHHHHHTTCCC---
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999887764
##### No 140 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4HAT_A GTP-binding nuclear protein Ran, Ran-specific; HEAT repeat, nuclear export, Ran-RanBP1; HET: GOL, LMB, GNP, EDO; 1.78A {Homo sapiens}
Probab=99.72 E-value=1.2e-21 Score=135.49 Aligned_cols=164 Identities=26% Similarity=0.454 Sum_probs=110.4 Template_Neff=11.200
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
+......+|+++|..++|||+|++++....+.....++....+ ............+.+||++|...+...+..++..+|
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 84 (216)
T 4HAT_A 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 84 (216)
T ss_dssp ---CCEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTGGGGGTTCC
T ss_pred CCCCccEEEEEECCCCCChHHHHHHHhcCCCccccccccccEEEEEEEEeCCcEEEEEEEeCCCCccccccchhhccCCc
Confidence 3456778999999999999999999887655333222221111 112222334568899999998877777777888999
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
++++|++.++..++...... ...+.......|+++++||.|+........ ...++... ...+++
T Consensus 85 ~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~iilv~nk~D~~~~~~~~~--------------~~~~~~~~-~~~~~~ 148 (216)
T 4HAT_A 85 CAIIMFDVTSRVTYKNVPNW-HRDLVRVCENIPIVLCGNKVDIKDRKVKAK--------------SIVFHRKK-NLQYYD 148 (216)
T ss_dssp EEEEEEETTCHHHHHTHHHH-HHHHHHHCTTCCEEEEEECTTSSSCCSCGG--------------GCCHHHHH-TCEEEE
T ss_pred EEEEEEeCCChHHHhcHHHH-HHHHHHHcCCCCEEEEEeCccccCcccchh--------------HHHHHHHc-CCeEEE
Confidence 99999999987766655433 333322224789999999999875321100 01111122 257889
Q sequence1 162 CSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~ 182 (184)
+|++++.|+.++|.++.+.+.
T Consensus 149 ~Sa~~~~~i~~~~~~l~~~~~ 169 (216)
T 4HAT_A 149 ISAKSNYNFEKPFLWLARKLI 169 (216)
T ss_dssp CCTTTCTTTTHHHHHHHHHHH
T ss_pred cccCCCCChHHHHHHHHHHHh
Confidence 999999999999999887765
##### No 141 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2O52_A Crystal structure of human RAB4B; G-PROTEIN, RAB, GDP, STRUCTURAL GENOMICS; HET: GDP; 2.2A {Homo sapiens}
Probab=99.72 E-value=1.3e-21 Score=133.25 Aligned_cols=168 Identities=28% Similarity=0.426 Sum_probs=107.5 Template_Neff=12.000
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
+......+|+++|..++|||+|++++..........++..... ......+.....+.+||++|.+.+...+..++..+|
T Consensus 20 ~~~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 99 (200)
T 2O52_A 20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 99 (200)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred CCcCceEEEEEECCCCCCHHHHHHHHhccccccCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHhhhHHHhcCCC
Confidence 3456778999999999999999999987654432222221111 111222334567899999998877777777888999
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
++++|+|.++..++......+........+..|+++++||.|+....... .......+...+ ..++.
T Consensus 100 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~ 166 (200)
T 2O52_A 100 GALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVT------------FLEASRFAQENE-LMFLE 166 (200)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSC------------HHHHHHHHHHTT-CEEEE
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEeCCCCCCcccCC------------HHHHHHHHHHCC-CeEEE
Confidence 99999999987666655443333333223568999999999986532110 011111122222 56889
Q sequence1 162 CSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
+|+.++.++.+++.++.+.+.+
T Consensus 167 ~s~~~~~~i~~~~~~l~~~~~~ 188 (200)
T 2O52_A 167 TSALTGENVEEAFLKCARTILN 188 (200)
T ss_dssp ECTTTCTTHHHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988877643
##### No 142 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4CZ2_B RAS-RELATED PROTEIN RAB-32, ANKYRIN REPEAT; SIGNALING PROTEIN, VARP, RAB-EFFECTOR, RAB; HET: GCP; 2.97A {HOMO SAPIENS}
Probab=99.72 E-value=1.3e-21 Score=136.34 Aligned_cols=167 Identities=22% Similarity=0.364 Sum_probs=111.4 Template_Neff=11.600
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDG-KQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
.....++|+++|.+++|||+|++++....+.....++..... .......+ ..+.+.+||++|++.+...+..++..+|
T Consensus 26 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 105 (230)
T 4CZ2_B 26 TREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGLERFGNMTRVYYKEAM 105 (230)
T ss_dssp CEEEEEEEEEEESTTSSHHHHHHHHHHCCCCSSCCCCCSEEEEEEEECCSSSEEEEEEEEEECGGGGGTTCHHHHHTTCC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEecCCceEEEEEEeCCCChhhHHHHHHHHhhCC
Confidence 345678999999999999999999987755433222221111 11111221 2267899999999888778888888999
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
++++|+|+.+..++......+....... ....|+++|+||.|+...... .......++......
T Consensus 106 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~~k~D~~~~~~~------------~~~~~~~~~~~~~~~ 173 (230)
T 4CZ2_B 106 GAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLANKCDQNKDSSM------------SPSQMDQFCKEHGFA 173 (230)
T ss_dssp EEEEEEETTCTHHHHTHHHHHHHHHTTCCCTTSSCCCEEEEEECTTSCCCSCC------------CHHHHHHHHHHHTCS
T ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCcccccC------------CHHHHHHHHHHhCCC
Confidence 9999999998766665544333222111 236889999999998753211 011111222233335
Q sequence1 158 GYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
.++++|+.++.++.++|.++.+.+.
T Consensus 174 ~~~~~s~~~~~~i~~~~~~l~~~~~ 198 (230)
T 4CZ2_B 174 GWFETSAKDNINIEEAARFLVEKML 198 (230)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred cEEEeeCCCCcCHHHHHHHHHHHHH
Confidence 7889999999999999999888764
##### No 143 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2WKQ_A NPH1-1, RAS-RELATED C3 BOTULINUM TOXIN; TRANSFERASE, CELL ADHESION, NUCLEOTIDE-BINDING, PROTEIN; HET: FMN, GTP; 1.6A {AVENA SATIVA, HOMO SAPIENS}
Probab=99.72 E-value=1.4e-21 Score=143.05 Aligned_cols=178 Identities=57% Similarity=0.988 Sum_probs=117.8 Template_Neff=11.700
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
....+++++|..++|||||++++..........++............+....+.+||+||...+...+..++..++++++
T Consensus 153 ~~~~~i~~~g~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 232 (332)
T 2WKQ_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred hcceEEEEECCCCCChHHHHHHHhcCCCCCCcCCCcccceEEEEEECCEEEEEEEEeCCCCcchhhhchhhcCCCcEEEE
Confidence 45678999999999999999999876554333332222222222333445678899999998887777778888999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184)
|+++++..++......+...+.......|+++|+||.|+.........................++.......++++|++
T Consensus 233 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 312 (332)
T 2WKQ_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 312 (332)
T ss_dssp EEETTCHHHHHHCCCCCHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEeCCChHHHHHHHHhHHHHHHHHCCCCCEEEEEeCccccCChHHHHHHHHcCCCCCCHHHHHHHHHHhCCCEEEEeeCC
Confidence 99999876665554444444444335689999999999986432111111111111111222223333333678899999
Q sequence1 166 TKDGVREVFEMATRAALQ 183 (184)
Q Consensus 166 ~~~~i~~~~~~~~~~~~~ 183 (184)
++.|+.+++.++.+.+++
T Consensus 313 ~~~~i~~~~~~l~~~~~~ 330 (332)
T 2WKQ_A 313 TQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCcCHHHHHHHHHHHHhC
Confidence 999999999999988764
##### No 144 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1O3Y_A ADP-ribosylation factor 1; PROTEIN TRANSPORT; HET: GTP; 1.5A {Mus musculus} SCOP: c.37.1.8
Probab=99.72 E-value=1.4e-21 Score=129.56 Aligned_cols=161 Identities=18% Similarity=0.250 Sum_probs=107.9 Template_Neff=11.700
Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 87 (184)
Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (184)
+.+|+++|++++|||||++++....+.... ++... ...........+.+||++|...+...+..++..++++++|+
T Consensus 2 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-~~~~~---~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 77 (166)
T 1O3Y_A 2 SMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGF---NVETVEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVV 77 (166)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSE---EEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCCEEEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHhccCCceeec-cccee---EEEEEEECCEEEEEEEeCCChhhHHHHHHHhccCCEEEEEE
Confidence 578999999999999999999876543221 11111 11112234568899999999888777888888999999999
Q sequence1 88 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 166 (184)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 166 (184)
|+++..++......+....... ....|+++++||+|+............ ....... ...+.++.+|+++
T Consensus 78 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~k~D~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~s~~~ 147 (166)
T 1O3Y_A 78 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDK---------LGLHSLR-HRNWYIQATCATS 147 (166)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHH---------HTGGGCC-SCCEEEEECBTTT
T ss_pred eCCCHHHHHHHHHHHHHHHhcccccCCEEEEEEeCcCCCCCCCHHHHHHH---------hCChhhc-CCCeEEEEEecCC
Confidence 9998665555444444433322 135789999999999764321110000 0000111 1225788999999
Q sequence1 167 KDGVREVFEMATRAAL 182 (184)
Q Consensus 167 ~~~i~~~~~~~~~~~~ 182 (184)
+.|+.++++++.+.+.
T Consensus 148 ~~gi~~~~~~l~~~~~ 163 (166)
T 1O3Y_A 148 GDGLYEGLDWLSNQLR 163 (166)
T ss_dssp TBTHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHh
Confidence 9999999999988764
##### No 145 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3DZ8_A Crystal structure of human Rab3B; ras, gdp, gtpase, structural genomics; HET: GDP; 1.9A {Homo sapiens}
Probab=99.72 E-value=1.4e-21 Score=132.21 Aligned_cols=167 Identities=30% Similarity=0.472 Sum_probs=110.8 Template_Neff=11.900
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
.....++|+++|.+++|||+|++++..........++..... ............+.+||++|.+.+...+..++..+|+
T Consensus 19 ~~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 98 (191)
T 3DZ8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG 98 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred CcceeEEEEEECCCCCChhHHHHHHcCCCCChhhcccceeEEEEEEEEECCEEEEEEEEeCCCchhhHhhhHHHhcCCCE
Confidence 345678999999999999999999987654332222211111 1122223345678999999988777777778889999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++|+|.++..++......+...........|+++++||.|+........ .....++...+ +.++.+
T Consensus 99 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~~k~D~~~~~~~~~------------~~~~~~~~~~~-~~~~~~ 165 (191)
T 3DZ8_A 99 FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPT------------EKGQLLAEQLG-FDFFEA 165 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH------------HHHHHHHHHHT-CEEEEC
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHHcCcCCCeEEEEEEcccCCCCeecCH------------HHHHHHHHHhC-CcEEEE
Confidence 99999998866555543333222222224679999999999875321100 11111122222 578899
Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184)
|++++.++.++|.++...+.+
T Consensus 166 s~~~~~~i~~~~~~l~~~~~~ 186 (191)
T 3DZ8_A 166 SAKENISVRQAFERLVDAICD 186 (191)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHHHH
Confidence 999999999999998877653
##### No 146 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3RAB_A RAB3A; G PROTEIN, VESICULAR TRAFFICKING, GTP; HET: GNP; 2.0A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.72 E-value=1.4e-21 Score=129.07 Aligned_cols=164 Identities=29% Similarity=0.497 Sum_probs=107.7 Template_Neff=12.500
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
....+++++|.+|+|||++++++..........+...... ............+.+||++|++.+...+..++..+++++
T Consensus 3 ~~~~~i~~~G~~~~GKs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 82 (169)
T 3RAB_A 3 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 82 (169)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEE
T ss_pred ceeEEEEEECCCCCChHHHHHHHcCCCCCcccCCcceEEEEEEEEEECCEEEEEEEEeCCCchHHHHHHHHHhCCCcEEE
Confidence 5678999999999999999999886654332222211111 111122233467899999998877777777888899999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
+|+|.++..++......+...........|+++++||.|+....... ......+..... ..++.+|+
T Consensus 83 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~k~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s~ 149 (169)
T 3RAB_A 83 LMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVS------------SERGRQLADHLG-FEFFEASA 149 (169)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHHT-CEEEECBT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCEEEEEEEcccCCCcccCC------------HHHHHHHHHHHC-CcEEEccC
Confidence 99999986666554332222222222467899999999987632210 011111111222 46888999
Q sequence1 165 KTKDGVREVFEMATRAAL 182 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~ 182 (184)
.++.++.+++.++...+.
T Consensus 150 ~~~~~i~~~~~~l~~~~~ 167 (169)
T 3RAB_A 150 KDNINVKQTFERLVDVIC 167 (169)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999998887654
##### No 147 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3CPJ_B Rab GDP-dissociation inhibitor, GTP-binding protein; Rab GTPase, prenylation, vesicular transport; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.5e-21 Score=135.56 Aligned_cols=167 Identities=27% Similarity=0.388 Sum_probs=106.7 Template_Neff=11.500
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
.....++|+++|.+++|||+|++++..........+.....+ ...+...+....+.+||++|.+.+...+..++..+|+
T Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~d~ 88 (223)
T 3CPJ_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHhCCCCCCccCCceeeeeEEEEEEECCEEEEEEEEeCCCCHHHHHHHHHHhccCCE
Confidence 346778999999999999999999987654332222211111 1122233345678999999988887778888889999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++|+++.+..++......+..+........|+++|+||.|+....... ......+..... ..++++
T Consensus 89 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ilv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~ 155 (223)
T 3CPJ_B 89 ALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVP------------TEESKTFAQENQ-LLFTET 155 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSC------------HHHHHHHHHHTT-CEEEEC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEeCCCCCCcccCC------------HHHHHHHHHHcC-CCEEEc
Confidence 9999999886666554333333222222368999999999987632110 011111112222 568899
Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184)
|++++.++.++|.++...+..
T Consensus 156 s~~~~~~i~~~~~~l~~~~~~ 176 (223)
T 3CPJ_B 156 SALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp CCC-CCCHHHHHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999998877643
##### No 148 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6S5H_A Ras-related protein Rab-38; GTPase, Ras-related protein Rab-38, Structural; HET: GTP, EDO; 2.0A {Homo sapiens}
Probab=99.72 E-value=1.5e-21 Score=133.81 Aligned_cols=170 Identities=22% Similarity=0.329 Sum_probs=109.5 Template_Neff=11.900
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVD-GKQVELALWDTAGLEDYDRLRPLSYPDT 80 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 80 (184)
+...+..+|+++|..++|||+|++++..........++..... ....... +....+.+||++|.+.+...+..++..+
T Consensus 5 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~ 84 (208)
T 6S5H_A 5 PHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREA 84 (208)
T ss_dssp CSEEEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCCSEEEEEEEEEEETTEEEEEEEEEECTTGGGSSCHHHHHTTE
T ss_pred CCccceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEEEeecCCCCeEEEEEEeCCCCcchhhhHHHHhccC
Confidence 4567789999999999999999999987654433222221111 1111111 2346789999999888777787788899
Q sequence1 81 DVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
|++++|+|+++..++.....++....... ....|+++++||.|+....... .......++.....
T Consensus 85 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~~k~D~~~~~~~~-----------~~~~~~~~~~~~~~ 153 (208)
T 6S5H_A 85 MGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLANKCDQGKDVLMN-----------NGLKMDQFCKEHGF 153 (208)
T ss_dssp EEEEEEEETTCHHHHHHHHHHHHHHHHHCCCTTSCCCEEEEEEECTTC------------------CHHHHHHHHHHHTC
T ss_pred cEEEEEecCCChHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCCCCcccccc-----------chHHHHHHHHHhCC
Confidence 99999999998766655433232222211 1367899999999987532110 00111122223333
Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
..++.+|+.++.++.++|.++.+.+..
T Consensus 154 ~~~~~~S~~~~~~i~~l~~~l~~~~~~ 180 (208)
T 6S5H_A 154 VGWFETSAKENINIDEASRCLVKHILA 180 (208)
T ss_dssp SEEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 578899999999999999998876643
##### No 149 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6BOF_B GTPase KRas; HYDROLASE, small gtpase, signal transduction; HET: GDP; 1.401A {Homo sapiens}
Probab=99.72 E-value=1.5e-21 Score=129.21 Aligned_cols=162 Identities=31% Similarity=0.517 Sum_probs=108.9 Template_Neff=12.200
Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 87 (184)
Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (184)
.++|+++|.+++|||||++++..........++...........++....+.+||++|...+...+..+...++++++++
T Consensus 2 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i~v~ 81 (168)
T 6BOF_B 2 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 81 (168)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHEEEEECTTSTTSEEEEEEETTEEEEEEEECCSGGGGGCSCHHHHHHHCSEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHCCCCCcccCCcccccEEEEEEECCEEEEEEEEeCCCchHhHhhHHHHhhhCCEEEEEE
Confidence 57899999999999999999987665433333222222223333444567889999998877777777888899999999
Q sequence1 88 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 166 (184)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 166 (184)
++++..++......+....... ....|+++++||.|+....... .....++...+ ..++.+|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~k~d~~~~~~~~-------------~~~~~~~~~~~-~~~~~~s~~~ 147 (168)
T 6BOF_B 82 AINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDT-------------KQAQDLARSYG-IPFIETSTKT 147 (168)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCH-------------HHHHHHHHHHT-CCEEECCTTT
T ss_pred ECCChHhHHHHHHHHHHHHHccCCCCCcEEEEEeCCCCCCCcCCH-------------HHHHHHHHHhC-CCEEEeeCCC
Confidence 9988665555433332222211 1357899999999987532111 11111222222 5688999999
Q sequence1 167 KDGVREVFEMATRAALQ 183 (184)
Q Consensus 167 ~~~i~~~~~~~~~~~~~ 183 (184)
+.++.+++.++.+.+..
T Consensus 148 ~~~i~~~~~~l~~~~~~ 164 (168)
T 6BOF_B 148 RQGVDDAFYTLVREIRK 164 (168)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999998877643
##### No 150 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>5WDQ_A GTPase HRas (E.C.3.6.5.2); small G-protein, GTPase, ONCOPROTEIN, HYDROLASE; HET: GNP, ACT; 1.25A {Homo sapiens}
Probab=99.72 E-value=1.5e-21 Score=129.34 Aligned_cols=165 Identities=32% Similarity=0.502 Sum_probs=108.8 Template_Neff=12.300
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
..+..+|+++|+.++||||+++++..........++............+....+.+||++|...+...+..+...+++++
T Consensus 4 ~~~~~~i~~~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 83 (170)
T 5WDQ_A 4 HMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 83 (170)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSSCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcccceEEEEEECCEEEEEEEEECCCchHhHhhHHHHhhcCCEEE
Confidence 45678999999999999999999987654332222222222222223334567889999998888777888888899999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
+|+++.+..++......+....... ....|+++++||.|........ .....++.... ..++.+|
T Consensus 84 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~~k~d~~~~~~~~-------------~~~~~~~~~~~-~~~~~~s 149 (170)
T 5WDQ_A 84 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDAAARTVES-------------RQAQDLARSYG-IPYIETS 149 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCH-------------HHHHHHHHHHT-CCEEECC
T ss_pred EEEeCCChhhHHHHHHHHHHHHHhccCCCCcEEEEEecccccCCcCCH-------------HHHHHHHHHhC-CCEEEEe
Confidence 9999988665554433222222211 2358899999999987532111 01111112222 5688899
Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184)
+.++.++.++++++...+.+
T Consensus 150 ~~~~~~i~~~~~~i~~~~~~ 169 (170)
T 5WDQ_A 150 AKTRQGVEDAFYTLVREIRQ 169 (170)
T ss_dssp TTTCTTHHHHHHHHHHHHTT
T ss_pred cCCCcCHHHHHHHHHHHHHc
Confidence 99999999999998877653
##### No 151 #####
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>5XC5_A Probable Rab-related GTPase; Rab GTPase, Acanthamoeba polyphaga mimivirus; HET: ACT, GTP; 1.398A {Acanthamoeba polyphaga mimivirus}
Probab=99.72 E-value=1.5e-21 Score=130.60 Aligned_cols=165 Identities=19% Similarity=0.301 Sum_probs=109.2 Template_Neff=11.700
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIE-VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~-~~~-~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
.+..+|+++|.+++|||+|++++..........++....+.. ... .......+.+||++|+..+...+..++..++++
T Consensus 3 ~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 82 (176)
T 5XC5_A 3 NNGYKIILIGSSGVGKSSIVHQFLFNRKISNVSPTIGAAFASKQVIAKNGKTLKLNIWDTAGLERFRSITKMYYTNSLGC 82 (176)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHCSSCCCCCCCCCSCEEEEEEEECTTSCEEEEEEEECCCSGGGHHHHGGGCTTCSEE
T ss_pred CCCeEEEEECCCCCChHHHHHHHHhCCCCcCCCCceEEEEEEEEEEeeCCcEEEEEEEeCCCchhhHhhhhhhcCCCeEE
Confidence 567899999999999999999998766543222221111111 111 122346788999999887777777778889999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|+|+++..++......+...........|+++++||.|+...... . .......++...+ ..++.+|
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~d~~~~~~~-~----------~~~~~~~~~~~~~-~~~~~~s 150 (176)
T 5XC5_A 83 LVVFDVTDRESFDDVYYWINDLRINCHTTYYILVVANKIDIDKNNWR-V----------SENEIKKFCRDND-CDYVFAS 150 (176)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHCSCCCEEEEEEECTTSCGGGCS-S----------CHHHHHHHHHHTT-CEEEECC
T ss_pred EEEEeCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEehhhcCCCCCc-C----------CHHHHHHHHHHCC-CCEEEEe
Confidence 99999998777766544333333322346789999999998653211 0 0111222222222 5788999
Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184)
+.++.|+.++|+.+.+.+.
T Consensus 151 ~~~~~~i~~~~~~l~~~i~ 169 (176)
T 5XC5_A 151 SFESDTVNNLFGKMIDKMS 169 (176)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHh
Confidence 9999999999999888764
##### No 152 #####
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>1OIX_A RAS-RELATED PROTEIN RAB-11A; SMALL G PROTEIN, INTRACELLULAR TRAFFICKING; HET: GDP; 1.7A {HOMO SAPIENS} SCOP: c.37.1.8
Probab=99.71 E-value=1.6e-21 Score=132.27 Aligned_cols=165 Identities=29% Similarity=0.440 Sum_probs=110.3 Template_Neff=11.500
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
......+|+++|+.++|||+|++++..........++..... .......+....+.+||++|...+...+..+...+++
T Consensus 25 ~~~~~~~i~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~ 104 (191)
T 1OIX_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG 104 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred hccceEEEEEECCCCCChHHHHHHHhcCCCCCCCCcceEEEEEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHhccCCE
Confidence 446678999999999999999999887654332222111111 1112223345678899999988777777778888999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++|+|+.+..++....+.+...........|+++++||.|........ ......++.... ..++++
T Consensus 105 ii~v~d~~~~~~~~~~~~~l~~~~~~~~~~~pvvlv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~ 171 (191)
T 1OIX_A 105 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP------------TDEARAFAEKNG-LSFIET 171 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC------------HHHHHHHHHHTT-CEEEEC
T ss_pred EEEEEcCCChhHHHHHHHHHHHHHHhCCCCCEEEEEEeccchhhccCCC------------HHHHHHHHHHcC-CeEEEe
Confidence 9999999986656555433333333323468999999999986532110 011111222222 568899
Q sequence1 163 SAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~ 181 (184)
|++++.++.++|+++.+.+
T Consensus 172 S~~~~~~i~~~~~~l~~~i 190 (191)
T 1OIX_A 172 SALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999988765
##### No 153 #####
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>2IL1_A predicted human GTPase in complex; G-PROTEIN, RAB, GDP, GTPASE, PREDICTED; HET: GDP; 2.1A {Homo sapiens}
Probab=99.71 E-value=1.7e-21 Score=132.04 Aligned_cols=169 Identities=26% Similarity=0.467 Sum_probs=108.4 Template_Neff=11.800
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
+...+..+|+++|.+++|||+|++++..........+...... ...+........+.+||++|.+.+...+..++..+|
T Consensus 21 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 100 (192)
T 2IL1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred CCccccEEEEEECCCCCCHHHHHHHHccCccccccCCcccceEEEEEEEECCEEEEEEEEeCCCChhhHhhhHHHhccCC
Confidence 3456778999999999999999999987654332222111111 112222334567899999998877777777888999
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
++++|++.++..++......+...........|+++++||.|+....... .......+.......++.
T Consensus 101 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~k~D~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 168 (192)
T 2IL1_A 101 GIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREIT------------RQQGEKFAQQITGMRFCE 168 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC------------HHHHHHHHHTSTTCEEEE
T ss_pred EEEEEEeCCCcchhhhHHHHHHHHHHHccCCCeEEEEEeCCCccccceeC------------HHHHHHHHHHHcCCeEEE
Confidence 99999999887665554332222222222467999999999987532110 011111222222367889
Q sequence1 162 CSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
+|+.++.++.++++++.+.+.+
T Consensus 169 ~s~~~~~~i~~~~~~l~~~~~~ 190 (192)
T 2IL1_A 169 ASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred eecCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887754
##### No 154 #####
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>2BOV_A RAS-RELATED PROTEIN RAL-A, MONO-ADP-RIBOSYLTRANSFERASE C3; C3BOT, EXOENZYME, RALA, GTPASE, ADP; HET: GDP; 2.66A {HOMO SAPIENS}
Probab=99.71 E-value=1.8e-21 Score=133.88 Aligned_cols=165 Identities=33% Similarity=0.488 Sum_probs=110.9 Template_Neff=11.100
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
.....+|+++|.+++|||||++++....+.....++....+............+.+||++|...+...+..++..+|+++
T Consensus 11 ~~~~~~i~ivG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 90 (206)
T 2BOV_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCccceEEEEEEECCEEEEEEEEeCCCCHHHHHhHHHHhcCCCEEE
Confidence 45678999999999999999999987665433322222222222233334457889999998877777777888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
+++++++..++......+..+.... ....|+++++||.|+....... ............ ..++++|
T Consensus 91 ~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~p~ilv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~S 157 (206)
T 2BOV_A 91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS------------VEEAKNRAEQWN-VNYVETS 157 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSC------------HHHHHHHHHHHT-CEEEEEC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccCCCcCCCC------------HHHHHHHHHHHC-CCEEEee
Confidence 9999988666655543333333221 2368999999999997532110 011111111122 5688999
Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184)
+.++.|+.++|.++++.+.
T Consensus 158 ~~~~~~i~~~~~~l~~~~~ 176 (206)
T 2BOV_A 158 AKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887664
##### No 155 #####
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>6IY1_C Ras-related protein Rab-11A; Complex, transport, GTPase, TRANSPORT PROTEIN; HET: GDP; 2.11A {Homo sapiens}
Probab=99.71 E-value=1.8e-21 Score=127.14 Aligned_cols=162 Identities=29% Similarity=0.444 Sum_probs=108.1 Template_Neff=13.200
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
..++|+++|+.++|||++++++..........++..... .......+....+.+||++|...+...+..+...++++++
T Consensus 2 ~~~~i~i~G~~~~GKs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T 6IY1_C 2 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEECSCCCSHHHHHHHHTTEEEEEE
T ss_pred ceEEEEEECCCCCChHHHHHHHhcCCCCCCCcceeeeEEEEEEEEECCEEEEEEEEeCCCchhhHHhchHHhcCCCEEEE
Confidence 467899999999999999999886654322222111111 1122233345678899999988777777777788999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184)
++++++..++....+.+...........|+++++||.|+....... ......++...+ ..++++|+.
T Consensus 82 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s~~ 148 (165)
T 6IY1_C 82 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP------------TDEARAFAEKNG-LSFIETSAL 148 (165)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC------------HHHHHHHHHHHT-CEEEECBTT
T ss_pred EEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEecccchhhcCCC------------HHHHHHHHHHcC-CcEEEeeCC
Confidence 9999987666555443333333323468999999999987632210 111112222222 568899999
Q sequence1 166 TKDGVREVFEMATRAA 181 (184)
Q Consensus 166 ~~~~i~~~~~~~~~~~ 181 (184)
++.++.++|+++.+.+
T Consensus 149 ~~~~i~~~~~~l~~~~ 164 (165)
T 6IY1_C 149 DSTNVEAAFQTILTEI 164 (165)
T ss_dssp TTBTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999988765
##### No 156 #####
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>2ATV_A RAS-like estrogen-regulated growth inhibitor; RERG, GDP/GTP binding, GTP hydrolysis; HET: GDP; 1.9A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=1.9e-21 Score=132.55 Aligned_cols=166 Identities=28% Similarity=0.416 Sum_probs=107.1 Template_Neff=11.400
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
+......+|+++|.+++|||+|++++..........++............+....+.+||++|++.+.. +..+...+++
T Consensus 23 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~d~ 101 (196)
T 2ATV_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQ-REGHMRWGEG 101 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCHH-HHHHHHHCSE
T ss_pred cccCCcEEEEEECCCCCCHHHHHHHHhcCCCccccCCCcceeEEEEEEECCEEEEEEEEeCCCCCCchh-hhhhhccCCE
Confidence 345678999999999999999999998766543333222222222333344556789999999876544 5556778999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKH--FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
+++|+|+.++.++..... +...+.. .....|+++++||.|+....... ......++...+ ..++
T Consensus 102 ~i~v~d~~~~~~~~~~~~-~~~~l~~~~~~~~~~ivlv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~ 167 (196)
T 2ATV_A 102 FVLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHSRQVS------------TEEGEKLATELA-CAFY 167 (196)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGGCCSC------------HHHHHHHHHHHT-SEEE
T ss_pred EEEEEECCChHHHHHHHH-HHHHHHHhcCCCCCEEEEEEecCCCCCcccCC------------HHHHHHHHHHhC-CCEE
Confidence 999999998766655422 2222211 12368899999999986532110 011111222222 5688
Q sequence1 161 ECSAKTKD-GVREVFEMATRAALQ 183 (184)
Q Consensus 161 ~~s~~~~~-~i~~~~~~~~~~~~~ 183 (184)
.+|+.++. |+.++|.++.+.+.+
T Consensus 168 ~~Sa~~~~~~i~~~~~~l~~~~~~ 191 (196)
T 2ATV_A 168 ECSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp ECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred EEeecCCCCcHHHHHHHHHHHHHH
Confidence 99999998 999999998887653
##### No 157 #####
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>3BC1_A Ras-related protein Rab-27A (E.C.3.6.5.2), Synaptotagmin-like; Rab27, GTPase, Rab, signaling protein; HET: GNP; 1.8A {Mus musculus}
Probab=99.71 E-value=2e-21 Score=132.29 Aligned_cols=165 Identities=28% Similarity=0.459 Sum_probs=107.5 Template_Neff=11.400
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIE----------VDGKQVELALWDTAGLEDYDRLR 73 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~-~~~----------~~~~~~~~~i~D~~g~~~~~~~~ 73 (184)
.....+|+++|.+++|||+|++++..........++....+.. ... .......+.+||++|++.+...+
T Consensus 8 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~ 87 (195)
T 3BC1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeeeEEEEEeEEEEecCCCCCCCCCCcEEEEEEEECCCcHHHHHhc
Confidence 3468999999999999999999998665433322222111111 000 01234578899999998887778
Q sequence1 74 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN 152 (184)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
..++..++++++|+++.+..++......+..+.... ....|+++++||.|........ .........
T Consensus 88 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~vivv~~k~D~~~~~~~~------------~~~~~~~~~ 155 (195)
T 3BC1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVK------------EEEARELAE 155 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSC------------HHHHHHHHH
T ss_pred HHHHccCCEEEEEeeCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEecccchhhcCCC------------HHHHHHHHH
Confidence 778889999999999998666665533333322221 1357899999999987532110 011111112
Q sequence1 153 RIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 153 ~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
..+ ..++++|+.++.++.++|.++.+.+.
T Consensus 156 ~~~-~~~~~~s~~~~~~~~~~~~~l~~~~~ 184 (195)
T 3BC1_A 156 KYG-IPYFETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp HHT-CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HhC-CCEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 222 56889999999999999988877653
##### No 158 #####
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>2H17_A Structure of human ADP-ribosylation factor-like; GDP, GTPASE, MEMBRANE TRAFFICKING, STRUCTURAL; HET: GDP; 1.7A {Homo sapiens}
Probab=99.71 E-value=2e-21 Score=131.39 Aligned_cols=162 Identities=19% Similarity=0.305 Sum_probs=104.5 Template_Neff=10.300
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
.+...+|+++|+.++|||||++++....+.... ++.... ... .......+.+||++|++.+...+..++..+++++
T Consensus 18 ~~~~~ki~iiG~~~~GKstl~~~l~~~~~~~~~-~~~~~~-~~~--~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~vi 93 (181)
T 2H17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSN-VEE--IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVI 93 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEE-CCSSSS-CEE--EEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCcce-EEE--EEECCEEEEEEECCCChhhhhHHHHHccCCCEEE
Confidence 466789999999999999999999876553321 111111 111 1122456889999999888888888889999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
+++|.++..++......+...... .....|+++++||+|+...... ........ . ... ......++.+|
T Consensus 94 ~v~d~s~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-~~~~~~~~----~---~~~--~~~~~~~~~~s 163 (181)
T 2H17_A 94 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV-AEISQFLK----L---TSI--KDHQWHIQACC 163 (181)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-HHHHHHTT----G---GGC--CSSCEEEEECB
T ss_pred EEEECCChHhHHHHHHHHHHHHhChhhcCCeEEEEEeCCCCCcCCCH-HHHHHHhC----C---ccc--cCCCeEEEECC
Confidence 999998765554444444433322 1236899999999999753211 11100000 0 000 01124577899
Q sequence1 164 AKTKDGVREVFEMATRA 180 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~ 180 (184)
++++.|+.++|+++.+.
T Consensus 164 ~~~~~~i~~~~~~l~~~ 180 (181)
T 2H17_A 164 ALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTTTBTHHHHHHHHHTC
T ss_pred CCCCccHHHHHHHHHhc
Confidence 99999999999998764
##### No 159 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6S5F_A Ras-related protein Rab-39B; GTPase, Ras-related protein Rab-39B, GMPPNP; HET: GNP; 1.7A {Homo sapiens}
Probab=99.71 E-value=2.1e-21 Score=132.77 Aligned_cols=168 Identities=28% Similarity=0.459 Sum_probs=111.8 Template_Neff=12.200
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVD-GKQVELALWDTAGLEDYDRLRPLSYPDT 80 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 80 (184)
+.....++|+++|..++|||+|++++..........++....+ ....... .....+.+||++|.+.+...+..++..+
T Consensus 4 ~~~~~~~~i~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 83 (208)
T 6S5F_A 4 AIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNS 83 (208)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTC
T ss_pred cccceeeEEEEECCCCCChHHHHHHHhcCCCCCCCCCcceEEEEEEEEEecCCCeEEEEEEeCCCcHHHHHHHHHHhccC
Confidence 3456779999999999999999999987654333222211111 1111111 2356789999999988777788888899
Q sequence1 81 DVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 159 (184)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
|++++|+|+.+..++......+....... ....|+++++||.|+....... ......++...+ +.+
T Consensus 84 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~ 150 (208)
T 6S5F_A 84 VGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVT------------RHEAEKLAAAYG-MKY 150 (208)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHTTCCSSSCCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHTT-CCE
T ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcCcccceEEEEeeCCCCCCCCcCC------------HHHHHHHHHHcC-CeE
Confidence 99999999998776666543333332221 1367899999999987632110 011111222222 578
Q sequence1 160 MECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 160 ~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
+.+|+.++.++.++|.++.+.+..
T Consensus 151 ~~~s~~~~~~i~~~~~~l~~~~~~ 174 (208)
T 6S5F_A 151 IETSARDAINVEKAFTDLTRDIYE 174 (208)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEeeccCCCCHHHHHHHHHHHHHH
Confidence 899999999999999988877643
##### No 160 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6H17_A Mutual gliding-motility protein MglA; GTPase, motility, CYTOSOLIC PROTEIN; HET: SO4, GSP; 1.275A {Myxococcus xanthus DK 1622}
Probab=99.71 E-value=2.1e-21 Score=132.57 Aligned_cols=163 Identities=26% Similarity=0.304 Sum_probs=106.9 Template_Neff=11.700
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV----------YVPTVFENYV-ADI-EVDGKQVELALWDTAGLEDYDRL 72 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~----------~~~t~~~~~~-~~~-~~~~~~~~~~i~D~~g~~~~~~~ 72 (184)
....++|+++|.+++|||+|++++........ ..++...... ..+ ..++....+.+||++|.+.+...
T Consensus 9 ~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 88 (201)
T 6H17_A 9 REINCKIVYYGPGLCGKTTNLQYIYNKTAAETKGKLISLSTETDRTLFFDFLPLSLGEIRGFKTRFHLYTVPGQVFYDAS 88 (201)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHHSCGGGBCCCEEEEETTEEEEEEEEEEECCCCCTTSEEEEEEEECCCSGGGHHH
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHccccccccceeeccCCccceeeeeceeeeeEeeecCceEEEEEEeCCCCCchHHH
Confidence 45678999999999999999999886654321 1111111110 011 11223567889999998888878
Q sequence1 73 RPLSYPDTDVILMCFSID------SPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEE 146 (184)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
+..++..+|++++|+|.+ ...++..... |...+.......|+++++||.|+..... ...
T Consensus 89 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ilv~nk~D~~~~~~--------------~~~ 153 (201)
T 6H17_A 89 RKLILKGVDGVVFVADSQIERMEANMESLENLRI-NLAEQGYDLNKIPYVIQYNKRDLPNAVT--------------VEE 153 (201)
T ss_dssp HHHHHTTCSEEEEEEECBGGGHHHHHHHHHHHHH-HHHTTTCCTTTSCEEEEEECTTSTTBCC--------------HHH
T ss_pred HHHHHccCCEEEEEeeCCchhhHHHHHHHHHHHH-HHHHcccccCCCCEEEEEeCCCCCCCCC--------------HHH
Confidence 888888999999999998 4444444322 2222222234689999999999865211 111
Q sequence1 147 GRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 147 ~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
...++...+ +.++.+|++++.++.++|.++.+.+++
T Consensus 154 ~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~l~~~i~~ 189 (201)
T 6H17_A 154 MRKALNHRN-IPEYQAVAPTGVGVFDTLKAVAKLVLT 189 (201)
T ss_dssp HHHHHCTTC-CCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred HHHHhhcCC-CCEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 112222223 578899999999999999998887754
##### No 161 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2G6B_A Ras-related protein Rab-26; G-PROTEIN, RAB, GTP ANALOGUE, Structural; HET: GNP; 2.0A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=2.1e-21 Score=130.52 Aligned_cols=165 Identities=30% Similarity=0.491 Sum_probs=101.9 Template_Neff=11.500
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
.....+++++|.+++|||++++++....+... ..++....+ .......+....+.+||++|.+.+...+..++..+++
T Consensus 7 ~~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 86 (180)
T 2G6B_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred ccceEEEEEECCCCCCHHHHHHHHcCCCCCCCCceeceeeEEEEEEEEECCeEEEEEEEeCCCChhhHHcchHHhcCCCE
Confidence 34578999999999999999999987654321 112111111 1122233344578999999988777777777788999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++|+|+++..++......+..+........|+++++||.|+....... .......+.... ..++++
T Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~iiv~~k~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~~ 153 (180)
T 2G6B_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVK------------REDGEKLAKEYG-LPFMET 153 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSC------------HHHHHHHHHHHT-CCEEEC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHcCCCCEEEEEEeCccCCCcccCC------------HHHHHHHHHHhC-CCEEEe
Confidence 9999999886655555333333222222367899999999987532110 011111122222 468889
Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184)
|+..+.|+.++|.++...+.
T Consensus 154 s~~~~~~~~~~~~~~~~~~~ 173 (180)
T 2G6B_A 154 SAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999998887654
##### No 162 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>5XCO_A B-cell lymphoma 6 protein, F1324; Hydrolase, Complex, Inhibitor, Small GTPase; HET: GDP; 1.25A {Homo sapiens}
Probab=99.71 E-value=2.1e-21 Score=128.81 Aligned_cols=163 Identities=31% Similarity=0.486 Sum_probs=108.7 Template_Neff=12.200
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
....+|+++|.+++|||||++++..........++............+....+.+||++|.+.+...+..+...++++++
T Consensus 3 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (171)
T 5XCO_A 3 MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 82 (171)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHCCCCCCSSCCCCEEEEEEEEETTEEEEEEEEECCCTTSCCHHHHHHHHHCCEEEE
T ss_pred cceEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCcccceEEEEEECCEEEEEEEEECCCchhhHhhHHHHhhhCCEEEE
Confidence 45689999999999999999999876544333332222222233333445678899999988887778888888999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
++++.+..++......+....... ....|+++++||.|+........ ....++... ...++.+|+
T Consensus 83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~k~D~~~~~~~~~-------------~~~~~~~~~-~~~~~~~s~ 148 (171)
T 5XCO_A 83 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTK-------------QAQDLARSY-GIPFIETSA 148 (171)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHH-------------HHHHHHHHH-TCCEEECCT
T ss_pred EEeCCChhHHHHHHHHHHHHHhhCCCCCCCEEEEEeCccCCCCcCCHH-------------HHHHHHHHh-CCCEEEEeC
Confidence 999988655544432222222211 23589999999999875321111 011111112 256788999
Q sequence1 165 KTKDGVREVFEMATRAAL 182 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~ 182 (184)
.++.++.+++.++...+.
T Consensus 149 ~~~~~i~~~~~~l~~~~~ 166 (171)
T 5XCO_A 149 KTRQGVDDAFYTLVREIR 166 (171)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999887664
##### No 163 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2FA9_B GTP-binding protein SAR1b; Sar1H79G mutant, PROTEIN TRANSPORT; HET: GDP, SO4; 2.5A {Cricetulus griseus}
Probab=99.71 E-value=2.2e-21 Score=131.91 Aligned_cols=172 Identities=20% Similarity=0.233 Sum_probs=103.5 Template_Neff=10.800
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
..+..+|+++|++++|||||++++........ .++... ...... .....+.+||++|+......+..++..+++++
T Consensus 13 ~~~~~~i~i~G~~~~GKstll~~l~~~~~~~~-~~t~~~-~~~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ii 88 (189)
T 2FA9_B 13 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHP-TSEELT--IAGMTFTTFDLGGGIQARRVWKNYLPAINGIV 88 (189)
T ss_dssp TTCCEEEEEESSTTSSHHHHHHHHC---------CCCCC-SEEEEE--ETTEEEEECCCCCSSSHHHHHHHHGGGCSEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHcCCCCCcc-cCCCCC-CeeeEE--ECCEEEEEEEcCCCHHHHHHHHHHchhCCEEE
Confidence 45668999999999999999999987654221 111111 111111 12357899999998878778888888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVK--PEEGRDM-ANRIGAFGYM 160 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~ 160 (184)
+|+|+++...+......+....... ....|+++++||+|+...... ............ ....... ........++
T Consensus 89 ~v~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (189)
T 2FA9_B 89 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISE-ERLREMFGLYGQTTGKGSVSLKELNARPLEVF 167 (189)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCTTSTTSCEEEEEECTTSTTCCCH-HHHHHHHTCTTTSCCSSCCCTTTCCSCCEEEE
T ss_pred EEEECCChhhHHHHHHHHHHHhcchhhcCCCEEEEEeCCCCcccCCH-HHHHHHhhhccCCCCCCcccHHHhcCCcEEEE
Confidence 9999987655544433333333221 236899999999999763221 111111000000 0000000 0011125678
Q sequence1 161 ECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~ 181 (184)
.+||.+++|+.+++.++.+.+
T Consensus 168 ~~sa~~~~gi~~~~~~l~~~~ 188 (189)
T 2FA9_B 168 MCSVLKRQGYGEGFRWMAQYI 188 (189)
T ss_dssp ECBTTTTBSHHHHHHHHHTTC
T ss_pred EeeCCcCCcHHHHHHHHHHhc
Confidence 999999999999999987654
##### No 164 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6V5L_A GTPase KRas; KRas, allosteric inhibitor, drug discovery; HET: GDP, QPD, MG; NMR {Homo sapiens}
Probab=99.71 E-value=2.3e-21 Score=127.98 Aligned_cols=163 Identities=32% Similarity=0.520 Sum_probs=108.3 Template_Neff=12.600
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC 86 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (184)
+..+|+++|+.++||||+++++..........++............+....+.+||++|.+.+...+..++..++++++|
T Consensus 2 ~~~~i~i~G~~~~GKst~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~v 81 (169)
T 6V5L_A 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (169)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHSSCCSSCCTTCCCEEEEEEEETTEEEEEEEEECCSCCSSHHHHHHHHHHCSEEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHcCCCccccCCCccceEEEEEEECCEEEEEEEEeCCCchhhHHhHHHHHhhCCEEEEE
Confidence 46899999999999999999988665543332222222222223334456788999999888877788888899999999
Q sequence1 87 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184)
+++++..++......+....... ....|+++++||.|......... .....+.... ..++.+|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~d~~~~~~~~~-------------~~~~~~~~~~-~~~~~~s~~ 147 (169)
T 6V5L_A 82 FAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTK-------------QAQDLARSYG-IPFIETSAK 147 (169)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTSSCCCSCHH-------------HHHHHHHHHT-CCEEECBTT
T ss_pred EeCCChHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCccCCCCccCHH-------------HHHHHHHHhC-CCEEEeeCC
Confidence 99988665555433333222221 23578999999999875321111 1111112222 567889999
Q sequence1 166 TKDGVREVFEMATRAALQ 183 (184)
Q Consensus 166 ~~~~i~~~~~~~~~~~~~ 183 (184)
++.++.+++.++.+.+.+
T Consensus 148 ~~~~i~~~~~~l~~~~~~ 165 (169)
T 6V5L_A 148 TRQGVDDAFYTLVREIRK 165 (169)
T ss_dssp TTBTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999998877643
##### No 165 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>5E95_A Mb(NS1), GTPase HRas; H-Ras, Monobody, Inhibitor, Complex, SIGNALING; HET: GDP; 1.402A {Homo sapiens}
Probab=99.70 E-value=2.9e-21 Score=127.62 Aligned_cols=164 Identities=34% Similarity=0.525 Sum_probs=108.7 Template_Neff=12.400
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
...++++++|++|+|||||++++..........++............+..+.+.+||++|.+.+...+..+...++++++
T Consensus 3 ~~~~~i~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (168)
T 5E95_A 3 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 82 (168)
T ss_dssp SCEEEEEEECSTTSSHHHHHHHHHHSSCCCCSSCCCCSCEEEEEEETTEEEEEEEEECTTSCTTCHHHHHHHHHCSEEEE
T ss_pred CcceEEEEECCCCCChHHHHHHHHcCcccccCCCCcccceeEEEEECCEEEEEEEEECCCchhhHHhHHHHhccCCEEEE
Confidence 46789999999999999999999866543322222222222222333445678899999988887777778888999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
|+++.+..++......+....... ....|+++++||.|......... .....+.... ..++.+|+
T Consensus 83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~d~~~~~~~~~-------------~~~~~~~~~~-~~~~~~s~ 148 (168)
T 5E95_A 83 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-------------QAQDLARSYG-IPYIETSA 148 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSCCCEEEEEECTTCSSCSSCHH-------------HHHHHHHHHT-CCEEEECT
T ss_pred EEeCCChHHHHHHHHHHHHHHHhcCCCCCcEEEEEeccccccccCCHH-------------HHHHHHHHhC-CCEEEEeC
Confidence 999987665554433222222211 12578999999999875321111 0111111222 56788999
Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184)
.++.++.+++.++.+.+..
T Consensus 149 ~~~~~i~~~~~~l~~~~~~ 167 (168)
T 5E95_A 149 KTRQGVEDAFYTLVREIRQ 167 (168)
T ss_dssp TTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHc
Confidence 9999999999999887653
##### No 166 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2GZH_A Ras-related protein Rab-11A (E.C.3.6.5.2), RAB11-FIP2; Ras-like G protein fold, a-helical; HET: GTP, MSE; 2.47A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=2.9e-21 Score=128.04 Aligned_cols=165 Identities=28% Similarity=0.413 Sum_probs=109.9 Template_Neff=12.500
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
.....++|+++|+.|+|||++++++..........++.... ........+....+.+||++|...+...+..+...+++
T Consensus 7 ~~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 86 (173)
T 2GZH_A 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG 86 (173)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECSSCSSCTTHHHHHTTCCE
T ss_pred hcceeEEEEEECCCCCChHHHHHHHhcCccCCCCCcceEEEEEEEEEEECCEEEEEEEEeCCCcHHHHHHhHHHhcCCCE
Confidence 34567899999999999999999988765433222221111 11122233345678899999988777677777788999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++++|..+..++......+...........|+++++||.|........ ......++... ..+++++
T Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~d~~~~~~~~------------~~~~~~~~~~~-~~~~~~~ 153 (173)
T 2GZH_A 87 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP------------TDEARAFAEKN-GLSFIET 153 (173)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHT-TCEEEEC
T ss_pred EEEEEcCCChhHHHHHHHHHHHHHHhCCCCCeEEEEEecccchhhcCCC------------HHHHHHHHHHc-CCCEEEe
Confidence 9999999886665555433333333222468999999999987532110 11111122222 2578899
Q sequence1 163 SAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~ 181 (184)
|+.++.++.++|+++.+.+
T Consensus 154 s~~~~~~i~~~~~~l~~~~ 172 (173)
T 2GZH_A 154 SALDSTNVEAAFQTILTEI 172 (173)
T ss_dssp CTTTCTTHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHhh
Confidence 9999999999999988765
##### No 167 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4V0L_A ARF-LIKE SMALL GTPASE; HYDROLASE; HET: GTP; 2.197A {CHLAMYDOMONAS REINHARDTII}
Probab=99.70 E-value=2.9e-21 Score=128.31 Aligned_cols=165 Identities=18% Similarity=0.226 Sum_probs=106.8 Template_Neff=11.800
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
......+|+++|.+++|||+|++++........ ..++.. ............+.+||++|...+...+..++..+|+
T Consensus 2 ~~~~~~~i~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~d~ 78 (169)
T 4V0L_A 2 AASKKVNVLVVGLDNSGKTTIIERLKPRPRQAAEVAPTVG---FTVDEVEKGPLTFTVFDMSGAGRYRTLWEQYYREADA 78 (169)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHTTSCGGGCCSCCCCCSS---EEEEEEEETTEEEEEEEECCSGGGGGGGGGGSTTCSE
T ss_pred CCCCceEEEEEcCCCCChhHHHHHhcCCCcccCccccccc---cEEEEEEECCEEEEEEEcCCChhHHHHHHHHHhhCCE
Confidence 446779999999999999999999986644221 111111 1111222335678999999988777778888889999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++|+|..+...+......+....... ....|+++|+||.|+.............. .... ......++.
T Consensus 79 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~k~D~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~ 148 (169)
T 4V0L_A 79 VVFVVDSADKLRMVVARDEMEHMLKHSNMRKVPILYFANKKDLPVAMPPVEIAQALG---------LDDI-KDRPWQIVP 148 (169)
T ss_dssp EEEEEETTCCTTHHHHHHHHHHHHHCTTCCSCCEEEEEECTTSTTCCCHHHHHHHHT---------GGGC-CSSCEEEEE
T ss_pred EEEEEEccCcccHHHHHHHHHHHHhcccccCCCEEEEEECCCCCCCCCHHHHHHHhC---------CHHh-CCCCeEEEE
Confidence 999999987655544433333332211 13689999999999875322111100000 0000 111246889
Q sequence1 162 CSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~ 181 (184)
+|++++.|+.++++++.+.+
T Consensus 149 ~s~~~~~~v~~~~~~l~~~~ 168 (169)
T 4V0L_A 149 SNGLTGEGVDKGIDWLAERL 168 (169)
T ss_dssp CBTTTTBTHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHhc
Confidence 99999999999999987654
##### No 168 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6IA7_B Intraflagellar transport protein 22; Intraflagellar transport protein 22, cilium; HET: GTP; 2.3A {Trypanosoma brucei brucei (strain 927/4 GUTat10.1)}
Probab=99.70 E-value=2.9e-21 Score=134.19 Aligned_cols=168 Identities=16% Similarity=0.173 Sum_probs=95.2 Template_Neff=11.300
Q sequence1 2 AMGSPIRKKLVIVGDGACGKTCLLIVNSKDQ--FPEVYVPTVFENY-VADIEVD-----------GKQVELALWDTAGLE 67 (184)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~--~~~~~~~t~~~~~-~~~~~~~-----------~~~~~~~i~D~~g~~ 67 (184)
++.....++|+++|..++|||||++++.... ......++..... ....... +....+.+||++|.+
T Consensus 3 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 82 (223)
T 6IA7_B 3 ASMSDDLVKILVLGPSKSGKSTVTNFLAGTRDTPTKEYHETNPLRVLEVEIALDDTRRSGRQAAGLKKAVVQLWDVGGSS 82 (223)
T ss_dssp -------CEEEEECSTTSSHHHHHHHHTCC----------CCSEEEEECCC----------------CCCCEEEEECCC-
T ss_pred CccCccceEEEEECCCCCCHHHHHHHHcCCCCCCCcCccCCCCeEEEEEEEecCCcccCCccccCCCeEEEEEEECCCCh
Confidence 3456778999999999999999999998632 2222222211111 1111111 235678899999988
Q sequence1 68 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF------------CPNVPIILVGNKKDLRNDEHTRRELA 135 (184)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~------------~~~~~~~vv~nK~D~~~~~~~~~~~~ 135 (184)
.+...+..++..++++++|+|+++..++......+....... ....|+++++||.|+......
T Consensus 83 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~v~~k~D~~~~~~~----- 157 (223)
T 6IA7_B 83 KHQAGWPAIASNADGIIYVFNPEVKGSEKELLLWYKNFALNQDELDDDNNFKMRVTDGHSLIFSHHSSLPEFAVG----- 157 (223)
T ss_dssp ------CCCCTTEEEEEEEECTTSTTHHHHHHHHHHHC-----------------CCSSEEEEEECSSCCSSSSG-----
T ss_pred hhcccHHHHhcCCcEEEEEeCcCCCccHHHHHHHHHHHHhcccccCCCcccccccCCCeEEEEEECCCCcccccC-----
Confidence 877778888889999999999998777665533332222211 124679999999998652111
Q sequence1 136 KMKQEPVKPEEGRDMANRIGAFGYMECSAK-TKDGVREVFEMATRAAL 182 (184)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~i~~~~~~~~~~~~ 182 (184)
......++.......++++|++ ++.++.++|.++...+.
T Consensus 158 --------~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~l~~~~~ 197 (223)
T 6IA7_B 158 --------DNAIPPMPKQLQGIRALETSLDYQSDNFKEAFDALVEQII 197 (223)
T ss_dssp --------GGSSCCCCGGGTTSEEEEECSSSSCCCHHHHHHHHHHHHH
T ss_pred --------cccCCCCChhhCCCeEEEecCccCChhHHHHHHHHHHHHH
Confidence 0111112222223578889999 89999999998887764
##### No 169 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6IAE_A Intraflagellar transport protein 22; Intraflagellar transport protein 22, cilium; HET: GTP; 2.49A {Trypanosoma brucei brucei (strain 927/4 GUTat10.1)}
Probab=99.70 E-value=2.9e-21 Score=134.19 Aligned_cols=168 Identities=16% Similarity=0.173 Sum_probs=99.5 Template_Neff=11.300
Q sequence1 2 AMGSPIRKKLVIVGDGACGKTCLLIVNSKDQ--FPEVYVPTVFENY-VADIEVD-----------GKQVELALWDTAGLE 67 (184)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~--~~~~~~~t~~~~~-~~~~~~~-----------~~~~~~~i~D~~g~~ 67 (184)
++.....++|+++|..++|||||++++.... ......++..... ....... +....+.+||++|.+
T Consensus 3 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 82 (223)
T 6IAE_A 3 ASMSDDLVKILVLGPSKSGKSTVTNFLAGTRDTPTKEYHETNPLRVLEVEIALDDTRRSGRQAAGLKKAVVQLWDVGGSS 82 (223)
T ss_dssp ----CCCEEEEEECCTTSCHHHHHHHHHSCCC-------CCCSBCCEEEECCC--------------CCEEEEEEBCCC-
T ss_pred CccCccceEEEEECCCCCCHHHHHHHHcCCCCCCCcCccCCCCeEEEEEEEecCCcccCCccccCCCeEEEEEEECCCCh
Confidence 3456778999999999999999999998632 2222222211111 1111111 235678899999988
Q sequence1 68 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF------------CPNVPIILVGNKKDLRNDEHTRRELA 135 (184)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~------------~~~~~~~vv~nK~D~~~~~~~~~~~~ 135 (184)
.+...+..++..++++++|+|+++..++......+....... ....|+++++||.|+......
T Consensus 83 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~v~~k~D~~~~~~~----- 157 (223)
T 6IAE_A 83 KHQAGWPAIASNADGIIYVFNPEVKGSEKELLLWYKNFALNQDELDDDNNFKMRVTDGHSLIFSHHSSLPEFAVG----- 157 (223)
T ss_dssp -----CTTSCTTCCEEEEEECTTSTTHHHHHHHHHHHHC-------------CCCCCSCEEEEEECSSCCSSSCS-----
T ss_pred hhcccHHHHhcCCcEEEEEeCcCCCccHHHHHHHHHHHHhcccccCCCcccccccCCCeEEEEEECCCCcccccC-----
Confidence 877778888889999999999998777665533332222211 124679999999998652111
Q sequence1 136 KMKQEPVKPEEGRDMANRIGAFGYMECSAK-TKDGVREVFEMATRAAL 182 (184)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~i~~~~~~~~~~~~ 182 (184)
......++.......++++|++ ++.++.++|.++...+.
T Consensus 158 --------~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~l~~~~~ 197 (223)
T 6IAE_A 158 --------DNAIPPMPKQLQGIRALETSLDYQSDNFKEAFDALVEQII 197 (223)
T ss_dssp --------TTSSCCCCTTTTTSCEEEECSSSSCCCHHHHHHHHHHHHH
T ss_pred --------cccCCCCChhhCCCeEEEecCccCChhHHHHHHHHHHHHH
Confidence 0111112222223578889999 89999999998887764
##### No 170 #####
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>2NZJ_B GTP-binding protein REM 1; REM1, GDP/GTP binding, GTP hydrolysis; HET: GDP; 2.5A {Homo sapiens}
Probab=99.70 E-value=3.1e-21 Score=128.15 Aligned_cols=165 Identities=28% Similarity=0.334 Sum_probs=99.4 Template_Neff=12.500
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--RPLSYPDTDVI 83 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--~~~~~~~~~~~ 83 (184)
.+.++|+++|++++|||||++.+.............................+.+||++|....... .......++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2NZJ_B 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCSCCTTSSSSSEEEEEEEETTEEEEEEEECCCC------CHHHHHTTTSCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHcCCCcccccccccceeEEEEEEECCceEEEEEEECCCccccCcccchhHHhcCCCEE
Confidence 3578999999999999999999986653321111111111112223334567889999998765433 23455778999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
++++++++..++......+....... ....|+++|+||+|+........ .......... ...++++
T Consensus 82 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nk~D~~~~~~~~~------------~~~~~~~~~~-~~~~~~~ 148 (175)
T 2NZJ_B 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSV------------EEGRACAVVF-DCKFIET 148 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCGGGCCSCH------------HHHHHHHHHH-TCEEEEC
T ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCcEEEEEehhhcccceecCH------------HHHHHHHHHh-CCEEEEE
Confidence 99999988766665543333332211 23689999999999976432110 0000111111 2578899
Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184)
|+.++.++.+++.++...+.+
T Consensus 149 S~~~~~~i~~~~~~l~~~~~~ 169 (175)
T 2NZJ_B 149 SATLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHHH
Confidence 999999999999998877653
##### No 171 #####
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>3Q85_A GTP-binding protein REM 2; G-domain, G-protein, Cav2 beta, SIGNALING; HET: GNP; 1.757A {Mus musculus}
Probab=99.70 E-value=3.2e-21 Score=127.28 Aligned_cols=163 Identities=28% Similarity=0.335 Sum_probs=99.3 Template_Neff=12.600
Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLEDYDR-LRPLSYPDTDVILM 85 (184)
Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~i~ 85 (184)
.++|+++|++++|||+|++++...........+. ...........+....+.+||++|...+.. .+..+...+|++++
T Consensus 2 ~~~i~v~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ii~ 81 (169)
T 3Q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEEcCCCCCHHHHHHHhccCCCCcccccCCCcceeEEEEEeCCCeEEEEEEEeCCCcccchhhHHHHchhCCEEEE
Confidence 5789999999999999999997654332211111 111122222333456788999999875543 34445677899999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
|+|.++..++......+........ ...|+++++||.|+....... ......++...+ +.++++|+
T Consensus 82 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s~ 148 (169)
T 3Q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS------------LEEGRHLAGTLS-CKHIETSA 148 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSC------------HHHHHHHHHHTT-CEEEECBT
T ss_pred EEeCCChHHhccHHHHHHHHHcCCCCCCCcEEEEEeCCccccccccC------------HHHHHHHHHHhC-CcEEEecC
Confidence 9999987766665444443332211 257899999999987632210 111111222222 57899999
Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184)
+++.++.++|.++.+.+..
T Consensus 149 ~~~~~i~~~~~~l~~~~~~ 167 (169)
T 3Q85_A 149 ALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHh
Confidence 9999999999999887653
##### No 172 #####
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>1F6B_A SAR1; GTPASES, N-TERMINAL HELIX, MG-CONTAINING COMPLEX; HET: GDP, SO4; 1.7A {Cricetulus griseus} SCOP: c.37.1.8
Probab=99.70 E-value=3.2e-21 Score=132.16 Aligned_cols=172 Identities=21% Similarity=0.244 Sum_probs=101.5 Template_Neff=10.400
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
.....+|+++|.+++|||||++++........ .++.. .....+. .....+.+||++|+..+...+..++..+|+++
T Consensus 22 ~~~~~~i~i~G~~~~GKssli~~l~~~~~~~~-~~t~~-~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~l~~~d~ii 97 (198)
T 1F6B_A 22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLH-PTSEELT--IAGMTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCC-CSCEEEE--ETTEEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHcCCCCccc-cccCC-CceeeEE--ECCEEEEEEEcCCCHHHHHHHHHHhhhCCEEE
Confidence 45668999999999999999999987654322 11111 1111111 12357889999998877777878888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKP-EEG-RD-MANRIGAFGYM 160 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~-~~-~~~~~~~~~~~ 160 (184)
+|+|+++...+......+....... ....|+++++||.|+...... ............. ... .. .........++
T Consensus 98 ~v~d~s~~~~~~~~~~~l~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (198)
T 1F6B_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISE-ERLREMFGLYGQTTGKGSVSLKELNARPLEVF 176 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCH-HHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred EEEECCChHhHHHHHHHHHHHhcChhhcCCCEEEEEeCCCCCCCCCH-HHHHHHhhhccCcCCCCcccHHhhcCCeEEEE
Confidence 9999987665555444444333221 236899999999999753211 1111110000000 000 00 00011125688
Q sequence1 161 ECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~ 181 (184)
++||.++.|+.+++.++.+.+
T Consensus 177 ~~sa~~~~~i~~~~~~l~~~~ 197 (198)
T 1F6B_A 177 MCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp ECBTTTTBSHHHHHHHHHTTC
T ss_pred EeecCcCCCHHHHHHHHHhhc
Confidence 999999999999999887653
##### No 173 #####
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>3Q85_B GTP-binding protein REM 2; G-domain, G-protein, Cav2 beta, SIGNALING; HET: GNP; 1.757A {Mus musculus}
Probab=99.70 E-value=3.3e-21 Score=127.10 Aligned_cols=163 Identities=28% Similarity=0.339 Sum_probs=99.4 Template_Neff=12.700
Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLEDYDR-LRPLSYPDTDVILM 85 (184)
Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~i~ 85 (184)
.++|+++|.+++|||+|++++............. ..........++....+.+||++|...+.. .+..+...+|++++
T Consensus 2 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~ 81 (169)
T 3Q85_B 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC------CTTHHHHHCSEEEE
T ss_pred cEEEEEEcCCCcCHHHHHHHhccCCCCcccccCCCCceeEEEEEeCCCeEEEEEEEeCCCcccchhhHHHHhhhCCEEEE
Confidence 5789999999999999999987654322211111 111122222333456788999999875543 34456678899999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
|+|..+..++......+....... ....|+++++||.|+....... ......++...+ ..++++|+
T Consensus 82 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s~ 148 (169)
T 3Q85_B 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS------------LEEGRHLAGTLS-CKHIETSA 148 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSC------------HHHHHHHHHHTT-CEEEECBT
T ss_pred EEeCCChHHhccHHHHHHHHHcCCCCCCCcEEEEEeCccccccceeC------------HHHHHHHHHHhC-CeEEEeCC
Confidence 999998766665544343333221 1357899999999987532210 011111222222 57899999
Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184)
+++.++.++|+++.+.+..
T Consensus 149 ~~~~~i~~~~~~l~~~i~~ 167 (169)
T 3Q85_B 149 ALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHh
Confidence 9999999999998877643
##### No 174 #####
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>2ZET_A Ras-related protein Rab-27B, Melanophilin; COMPLEX, GTP-BINDING PROTEIN, GTPASE, G-PROTEIN; HET: SO4, GTP; 3.0A {Mus musculus}
Probab=99.70 E-value=3.3e-21 Score=132.26 Aligned_cols=164 Identities=29% Similarity=0.469 Sum_probs=106.8 Template_Neff=11.100
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVD----------GKQVELALWDTAGLEDYDRLRP 74 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~ 74 (184)
...++|+++|.+++|||||++++..........++....+ ......+ .....+.+||++|+..+...+.
T Consensus 9 ~~~~~i~ivG~~~~GKstll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~~~~~ 88 (203)
T 2ZET_A 9 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTT 88 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCSEEEEEEEEEEECCCC---CCCEEEEEEEEEEECCSSTTHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCCCCcccCceeeeeeEEeEEEecCCCCCCCCCCceEEEEEEEeCCCcHHHHHHhH
Confidence 4578999999999999999999887654322211111111 0000000 1135688999999988887888
Q sequence1 75 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 153 (184)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
.+...++++++|+|+++..++.....++....... ....|+++++||+|+....... .......+..
T Consensus 89 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~------------~~~~~~~~~~ 156 (203)
T 2ZET_A 89 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVN------------ERQARELAEK 156 (203)
T ss_dssp HGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSSSSSCEEEEEEECTTCGGGCCSC------------HHHHHHHHHH
T ss_pred HHHccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhccCCCCcEEEEEeccCCcccccCC------------HHHHHHHHHH
Confidence 88889999999999998766665543333332211 2357899999999986532110 0111111222
Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
.. .+++++|+.++.++.++|.++...+.
T Consensus 157 ~~-~~~~~~S~~~~~~i~~~~~~l~~~i~ 184 (203)
T 2ZET_A 157 YG-IPYFETSAATGQNVEKSVETLLDLIM 184 (203)
T ss_dssp TT-CCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred hC-CCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 22 56889999999999999998887664
##### No 175 #####
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>5XC3_A Probable Rab-related GTPase; Rab GTPase, Acanthamoeba polyphaga mimivirus; HET: GDP; 1.497A {Acanthamoeba polyphaga mimivirus}
Probab=99.70 E-value=3.7e-21 Score=128.87 Aligned_cols=165 Identities=19% Similarity=0.297 Sum_probs=108.4 Template_Neff=11.500
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIE-VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
....+|+++|..++|||+|++++..........++....+. .... .......+.+||++|++.+...+..+...++++
T Consensus 3 ~~~~~i~ivG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 82 (176)
T 5XC3_A 3 NNGYKIILIGSSGVGKSSIVHQFLFNRKISNVSPTIGAAFASKQVIAKNGKTLKLNIWDTAGQERFRSITKMYYTNSLGC 82 (176)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSSCCTTCCCCTTSCSEEEEEECTTSCEEEEEEECCSSGGGGTCCCHHHHTTCSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeeCCeEEEEEEEeCCCChhhhhhhhhhccCCeEE
Confidence 45789999999999999999998866543322222111111 1111 122346788999999877766677777889999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++++|+....++.....++...........|+++++||.|+...... ........++...+ ..++++|
T Consensus 83 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~k~d~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~s 150 (176)
T 5XC3_A 83 LVVFDVTDRESFDDVYYWINDLRINCHTTYYILVVANKIDIDKNNWR-----------VSENEIKKFCRDND-CDYVFAS 150 (176)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHCSCCCEEEEEEECTTSCGGGCC-----------CCHHHHHHHHHHTT-CEEEECC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEechhcCCCCCc-----------CCHHHHHHHHHHCC-CCEEEEe
Confidence 99999988766666533333332222346789999999998653210 01122223333333 6789999
Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184)
+.++.|+.++|+.+.+.+.
T Consensus 151 ~~~~~~i~~~f~~i~~~~~ 169 (176)
T 5XC3_A 151 SFESDTVNNLFGKMIDKMS 169 (176)
T ss_dssp TTCHHHHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHh
Confidence 9999999999999887664
##### No 176 #####
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>6ZAY_A Ras-related protein Rab-33B, Autophagy-related protein; ATG16L autophagy autophagosome; HET: PO4, GDP, EDO, PEG; 2.4A {Homo sapiens}
Probab=99.70 E-value=4e-21 Score=130.80 Aligned_cols=165 Identities=26% Similarity=0.479 Sum_probs=104.8 Template_Neff=11.000
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGLEDYD-RLRPLSYPDTDV 82 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~ 82 (184)
..+..+|+++|.+++|||+|++++..........++....+. ......+....+.+||++|...+. ..+..+...+++
T Consensus 4 ~~~~~~i~i~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 83 (192)
T 6ZAY_A 4 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 83 (192)
T ss_dssp CCEEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSHHHHTTTHHHHHTTCCE
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcceeeEEEEEEEECCEEEEEEEEeCCCcHHhhHhhHHHHhhhCCE
Confidence 456789999999999999999998876553322222221111 112233445678999999987664 455666778999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++|+|++++.++......+....... ....|+++|+||+|+........ .....++... ...+++
T Consensus 84 ~ilv~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~vlv~~k~D~~~~~~~~~------------~~~~~~~~~~-~~~~~~ 150 (192)
T 6ZAY_A 84 VVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGNKCDLRSAIQVPT------------DLAQKFADTH-SMPLFE 150 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCSCSCCCEEEEEECTTCGGGCCSCH------------HHHHHHHHHT-TCCEEE
T ss_pred EEEEecCCCchhhhhHHHHHHHHHHHccccCCCEEEEEecccccccccCCH------------HHHHHHHHHc-CCCEEE
Confidence 999999998776655543333332221 23679999999999875321110 0011111121 256778
Q sequence1 162 CSAKT---KDGVREVFEMATRAAL 182 (184)
Q Consensus 162 ~s~~~---~~~i~~~~~~~~~~~~ 182 (184)
+|+.+ ++++.++|.++...+.
T Consensus 151 ~s~~~~~~~~~~~~~~~~l~~~~~ 174 (192)
T 6ZAY_A 151 TSAKNPNDNDHVEAIFMTLAHKLK 174 (192)
T ss_dssp CCSSSTTSSSCHHHHHHHHHHHHH
T ss_pred eecCCCCCcccHHHHHHHHHHHHH
Confidence 88887 5678888888776553
##### No 177 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6D71_A Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); GTPase, mitochondria, Miro, Rho, GEM1P; HET: GTP; 1.71807785325A {Homo sapiens}
Probab=99.70 E-value=4.1e-21 Score=128.76 Aligned_cols=163 Identities=25% Similarity=0.409 Sum_probs=108.1 Template_Neff=12.500
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC 86 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (184)
...+|+++|..|+|||||++++..........+..... ............+.+||++|.+.+...+..+...+|++++|
T Consensus 9 ~~~~v~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~v 87 (186)
T 6D71_A 9 KDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEI-TIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQANVICIV 87 (186)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSSCCSSCCSSCCCE-EECGGGSTTSSCEEEEECCTTTSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCCccce-eeeccCCCCeEEEEEEecCCCCCCHHHHHHHhccCCEEEEE
Confidence 45789999999999999999998765443222221111 11112233456789999999887776777778899999999
Q sequence1 87 FSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
+|+++..++......+...+.... ...|+++|+||+|+....... .... .. ........++++|
T Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~-~~~~---------~~---~~~~~~~~~~~~s 154 (186)
T 6D71_A 88 YAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLVEYSSME-TILP---------IM---NQYTEIETCVECS 154 (186)
T ss_dssp EETTCHHHHHHCCCCCHHHHTTCSCTTSCCCEEEEEECGGGCSSCSHH-HHHH---------HH---HHCTTEEEEEECB
T ss_pred EECCChHHHHHHHHhHHHHHHhhCCCCCCCcEEEEEeccccCCccchh-hHHH---------HH---hHhhcCcceEEee
Confidence 999987666655444444443322 268999999999987532111 0000 00 0111125688999
Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184)
+.++.++.+++.++.+.+.+
T Consensus 155 ~~~~~~i~~~~~~i~~~~~~ 174 (186)
T 6D71_A 155 AKNLKNISELFYYAQKAVLH 174 (186)
T ss_dssp TTTTBSHHHHHHHHHHHHHS
T ss_pred cCcCCCHHHHHHHHHHHHhC
Confidence 99999999999998877643
##### No 178 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6D71_B Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); GTPase, mitochondria, Miro, Rho, GEM1P; HET: GTP; 1.71807785325A {Homo sapiens}
Probab=99.70 E-value=4.2e-21 Score=128.85 Aligned_cols=163 Identities=25% Similarity=0.421 Sum_probs=106.6 Template_Neff=12.400
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
....+|+++|..++|||||++++..........+..... ............+.+||++|++.+...+..++..+|++++
T Consensus 8 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i~ 86 (186)
T 6D71_B 8 KKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEI-TIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQANVICI 86 (186)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHTSCCSSCCSSCCCE-EECGGGSTTCCCEEEEECCTTTCCHHHHHHHHHHCSEEEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCceee-eecCCCCCCeeeEEEEecCCCcCCHHHHHHHhccCCEEEE
Confidence 356789999999999999999998765443222211111 1111222344578999999988777777777788999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
|+|+++..++......+...+.... ...|+++|+||.|+........ .. .. .........++++
T Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~~-~~---------~~---~~~~~~~~~~~~~ 153 (186)
T 6D71_B 87 VYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLVEYSSMET-IL---------PI---MNQYTEIETCVEC 153 (186)
T ss_dssp EEETTCHHHHHHCCCCCHHHHHTTSCTTSCCCEEEEEECGGGCSSCSHHH-HH---------HH---HHHCTTEEEEEC-
T ss_pred EEECCChHHHHHHHHhHHHHHHHhCCCCCCCCEEEEEEchhcCCccchHh-HH---------HH---HHhhhccceEEEc
Confidence 9999987666655444444443322 2689999999999975321110 00 00 0001112568899
Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184)
|++++.++.++++++.+.+.
T Consensus 154 s~~~~~~i~~l~~~i~~~~~ 173 (186)
T 6D71_B 154 SAKNLKNISELFYYAQKAVL 173 (186)
T ss_dssp CTTTCTTHHHHHHHHHHHHC
T ss_pred ccccCCCHHHHHHHHHHHhh
Confidence 99999999999999887764
##### No 179 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2NZJ_A GTP-binding protein REM 1; REM1, GDP/GTP binding, GTP hydrolysis; HET: GDP; 2.5A {Homo sapiens}
Probab=99.70 E-value=4.4e-21 Score=127.65 Aligned_cols=165 Identities=28% Similarity=0.328 Sum_probs=96.2 Template_Neff=12.300
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLR--PLSYPDTDVI 83 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--~~~~~~~~~~ 83 (184)
.+.++|+++|++++|||||++++.......................+.....+.+||++|...+...+ ......++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2NZJ_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHcCCCcccccccccceEEEEEEEECCeEEEEEEEECCCccccCcccchhHHhcCCCEE
Confidence 35789999999999999999999866432211111111111122233345678899999987654432 3345778899
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
++++++++..++......+....... ....|+++++||.|+........ ......+... ...++++
T Consensus 82 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~------------~~~~~~~~~~-~~~~~~~ 148 (175)
T 2NZJ_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSV------------EEGRACAVVF-DCKFIET 148 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCH------------HHHHHHHHHH-TSEEEEC
T ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCcEEEEEechhcccceecCH------------HHHHHHHHHh-CCeEEEE
Confidence 99999988766655433333322211 23689999999999976321100 0001111111 2568899
Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184)
|++++.++.+++.++...+.+
T Consensus 149 s~~~~~~i~~~~~~l~~~~~~ 169 (175)
T 2NZJ_A 149 SATLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHHHh
Confidence 999999999999998876643
##### No 180 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2F9L_A RAB11B, member RAS oncogene family; Rab11b GTPase, vesicle transport, HYDROLASE; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=4.4e-21 Score=130.93 Aligned_cols=165 Identities=29% Similarity=0.432 Sum_probs=107.5 Template_Neff=11.500
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
....++|+++|..|+|||+|++++..........++....+ ............+.+||++|.+.+...+.....+++++
T Consensus 2 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 81 (199)
T 2F9L_A 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA 81 (199)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCChHHHHHHHhcCCCCCCCCcceEEEEEEEEEEECCEEEEEEEEeCCCChhhHHhhHHHhccCCEE
Confidence 35678999999999999999999887654322222111111 11122233456788999999887776677777889999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|++..+...+....+.+...........|+++++||.|+....... ......++...+ ..++.+|
T Consensus 82 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~vilv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s 148 (199)
T 2F9L_A 82 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP------------TDEARAFAEKNN-LSFIETS 148 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC------------HHHHHHHHHHTT-CEEEECC
T ss_pred EEEEcCCChHHHHHHHHHHHHHHHhCCCCCeEEEEEecchhhhccCCC------------HHHHHHHHHHCC-CcEEEee
Confidence 999999876655555333333332222468999999999986532110 111111222222 5688999
Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184)
+.++.++.++|.++...+.
T Consensus 149 ~~~~~~i~~~~~~l~~~~~ 167 (199)
T 2F9L_A 149 ALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887764
##### No 181 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2F9M_A RAB11B, member RAS oncogene family; Rab11b GTPase, vesicle transport, HYDROLASE; HET: GNP; 1.95A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=4.4e-21 Score=130.93 Aligned_cols=165 Identities=29% Similarity=0.432 Sum_probs=108.2 Template_Neff=11.500
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
....++|+++|..|+|||+|++++..........++....+ ............+.+||++|.+.+...+.....+++++
T Consensus 2 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 81 (199)
T 2F9M_A 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA 81 (199)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCChHHHHHHHhcCCCCCCCCcceEEEEEEEEEEECCEEEEEEEEeCCCChhhHHhhHHHhccCCEE
Confidence 35678999999999999999999887654322222111111 11122233456788999999887776677777889999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|++..+...+....+.+...........|+++++||.|+....... ......++...+ ..++.+|
T Consensus 82 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~vilv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s 148 (199)
T 2F9M_A 82 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP------------TDEARAFAEKNN-LSFIETS 148 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC------------HHHHHHHHHHTT-CEEEECC
T ss_pred EEEEcCCChHHHHHHHHHHHHHHHhCCCCCeEEEEEecchhhhccCCC------------HHHHHHHHHHCC-CcEEEee
Confidence 999999876655555333333332222468999999999986532110 111111222222 5688999
Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184)
+.++.++.++|.++...+.
T Consensus 149 ~~~~~~i~~~~~~l~~~~~ 167 (199)
T 2F9M_A 149 ALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887764
##### No 182 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1MOZ_B ADP-ribosylation factor-like 1 (ARL1) from; GTP-BINDING, PROTEIN BINDING; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=5e-21 Score=129.12 Aligned_cols=164 Identities=18% Similarity=0.244 Sum_probs=105.0 Template_Neff=11.400
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
..+.++|+++|++++|||||++++........ .++.... . .........+.+||++|+..+...+..++..+++++
T Consensus 15 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~~~~~~-~--~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 90 (183)
T 1MOZ_B 15 SNKELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFN-V--ETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp CSSCEEEEEEEETTSSHHHHHHHTCCSEEEEE-CSSTTCC-E--EEEEETTEEEEEEEEC----CCTTSTTTTTTEEEEE
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHhcCCCCCCC-CCccceE-E--EEEEECCEEEEEEEcCCCcccHhHHHHHcccCCEEE
Confidence 45678999999999999999999986544321 1111111 1 112223567899999999888777888888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
+|++.++..++......+....... ....|+++++||.|+........ ... ......... ...+++.+|
T Consensus 91 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~nK~D~~~~~~~~~-~~~--------~~~~~~~~~-~~~~~~~~s 160 (183)
T 1MOZ_B 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASE-VSK--------ELNLVELKD-RSWSIVASS 160 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHH-HHH--------HTTTTTCCS-SCEEEEEEB
T ss_pred EEEECCChhhHHHHHHHHHHHHcchhhCCCEEEEEEECCCCCCCCCHHH-HHH--------HcChHHhcC-CCeEEEECC
Confidence 9999998766655544444433222 23588999999999876321111 000 000000111 125688999
Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184)
++++.|+.++|.++.+.+.
T Consensus 161 ~~~~~~~~~~~~~l~~~~~ 179 (183)
T 1MOZ_B 161 AIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp GGGTBTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887654
##### No 183 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2EFE_D Similarity to vacuolar protein sorting-associated; GEF, GTPase, Vps9, Rab5, nucleotide; HET: GNH; 2.08A {Arabidopsis thaliana}
Probab=99.69 E-value=5.1e-21 Score=128.22 Aligned_cols=166 Identities=31% Similarity=0.478 Sum_probs=108.7 Template_Neff=12.100
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
......+|+++|..++|||+|++++..........+.....+ .......+....+.+||++|+..+...+..+...+++
T Consensus 8 ~~~~~~~i~~vG~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (181)
T 2EFE_D 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEECSSCEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCccccCcceeEEEEEEEEEeCCeEEEEEEEeCCCChhhHhcchhhhCCCCE
Confidence 456678999999999999999999987654332222111111 1112223345678999999988777777777788999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++++|+.+..++......+...........|+++++||.|+...... .......++.... ..++.+
T Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~d~~~~~~~------------~~~~~~~~~~~~~-~~~~~~ 154 (181)
T 2EFE_D 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKV------------TAEDAQTYAQENG-LFFMET 154 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCCTTCCS------------CHHHHHHHHHHTT-CEEEEC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCCCcEEEEEEeCccccccccC------------CHHHHHHHHHHcC-CeEEEE
Confidence 999999998666555433333332222346788999999998653211 0111111222222 567899
Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184)
|++++.++.+++.++...+.
T Consensus 155 s~~~~~~i~~~~~~l~~~~~ 174 (181)
T 2EFE_D 155 SAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp CSSSCTTHHHHHHHHHHTCC
T ss_pred eCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999887654
##### No 184 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2EFH_B Similarity to vacuolar protein sorting-associated; GEF, GTPase, Vps9, Rab5, nucleotide; HET: GDP; 2.1A {Arabidopsis thaliana}
Probab=99.69 E-value=5.1e-21 Score=128.22 Aligned_cols=166 Identities=31% Similarity=0.478 Sum_probs=104.1 Template_Neff=12.100
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
......+|+++|..++|||+|++++..........+.....+ .......+....+.+||++|+..+...+..+...+++
T Consensus 8 ~~~~~~~i~~vG~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (181)
T 2EFH_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSSHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCCCSGGGGGGHHHHHTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCccccCcceeEEEEEEEEEeCCeEEEEEEEeCCCChhhHhcchhhhCCCCE
Confidence 456678999999999999999999987654332222111111 1112223345678999999988777777777788999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++++|+.+..++......+...........|+++++||.|+...... .......++.... ..++.+
T Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~d~~~~~~~------------~~~~~~~~~~~~~-~~~~~~ 154 (181)
T 2EFH_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKV------------TAEDAQTYAQENG-LFFMET 154 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCSTTCCS------------CHHHHHHHHHHTT-CEEEEC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCCCcEEEEEEeCccccccccC------------CHHHHHHHHHHcC-CeEEEE
Confidence 999999998666555433333332222346788999999998653211 0111111222222 567899
Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184)
|++++.++.+++.++...+.
T Consensus 155 s~~~~~~i~~~~~~l~~~~~ 174 (181)
T 2EFH_B 155 SAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp CTTTCTTHHHHHHHHHHHCC
T ss_pred eCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999887654
##### No 185 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4G01_B Vacuolar protein sorting-associated protein 9A; GTPase-GDP-metal-GEF complex, vps9 domain, Ras; HET: GDP; 2.2A {Arabidopsis thaliana}
Probab=99.69 E-value=5.1e-21 Score=128.22 Aligned_cols=166 Identities=31% Similarity=0.478 Sum_probs=108.7 Template_Neff=12.100
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
......+|+++|..++|||+|++++..........+.....+ .......+....+.+||++|+..+...+..+...+++
T Consensus 8 ~~~~~~~i~~vG~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (181)
T 4G01_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSSHHHHHHHHHHHHGGGCCCEEECSSEEEEEEEETTEEEEEEEECCCCCGGGGGGHHHHHTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCccccCcceeEEEEEEEEEeCCeEEEEEEEeCCCChhhHhcchhhhCCCCE
Confidence 456678999999999999999999987654332222111111 1112223345678999999988777777777788999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++++|+.+..++......+...........|+++++||.|+...... .......++.... ..++.+
T Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~d~~~~~~~------------~~~~~~~~~~~~~-~~~~~~ 154 (181)
T 4G01_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKV------------TAEDAQTYAQENG-LFFMET 154 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS------------CHHHHHHHHHHTT-CEEEEC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCCCcEEEEEEeCccccccccC------------CHHHHHHHHHHcC-CeEEEE
Confidence 999999998666555433333332222346788999999998653211 0111111222222 567899
Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184)
|++++.++.+++.++...+.
T Consensus 155 s~~~~~~i~~~~~~l~~~~~ 174 (181)
T 4G01_B 155 SAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp CTTTCTTHHHHHHHHHHHCC
T ss_pred eCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999887654
##### No 186 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6IAN_E Intraflagellar transport protein 22; Intraflagellar transport protein 22, IFT74; HET: GTP, MSE; 3.2A {Trypanosoma brucei brucei (strain 927/4 GUTat10.1)}
Probab=99.69 E-value=5.2e-21 Score=132.85 Aligned_cols=165 Identities=15% Similarity=0.187 Sum_probs=105.8 Template_Neff=11.100
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQ--FPEVYVPTVFEN-YVADIEVD-----------GKQVELALWDTAGLEDYDR 71 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~--~~~~~~~t~~~~-~~~~~~~~-----------~~~~~~~i~D~~g~~~~~~ 71 (184)
...++|+++|..++|||+|++++.... +.....++.... ....+... +....+.+||++|++.+..
T Consensus 3 ~~~~ki~i~G~~~~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 82 (220)
T 6IAN_E 3 DDLVKILVLGPSKSGKSTVTNFLAGTRDTPTKEYHETNPLRVLEVEIALDDTRRSGRQAAGLKKAVVQLWDVGGSSKHQA 82 (220)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHSSCCSCCCTTCCCCCSEEEEEECCCCC---------------CEEEEEECCCSSTTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCcccccEEEEEEEeCccccCCccccCCcEEEEEEEECCCChHHHH
Confidence 467899999999999999999988632 222222221111 11111111 2356789999999988888
Q sequence1 72 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-------------PNVPIILVGNKKDLRNDEHTRRELAKMK 138 (184)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~~~~vv~nK~D~~~~~~~~~~~~~~~ 138 (184)
.+..++..++++++|+|+++..++.... .|...+.... ...|+++|+||.|+.........+..
T Consensus 83 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~vlv~~k~D~~~~~~~~~~~~~-- 159 (220)
T 6IAN_E 83 GWPAIASNADGIIYVFNPEVKGSEKELL-LWYKNFALNQDELDDDNNFKMRVTDGHSLIFSHHSSLPEFAVGDNAIPP-- 159 (220)
T ss_dssp THHHHHTTCCEEEEEECTTSTTHHHHHH-HHHHHCC--------------CCCSSCCEEEEECSSSCSSTTTTC--CC--
T ss_pred HHHHHHhcCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCCCCCCCccccCCCEEEEEeccccccccCCHHHHHH--
Confidence 8888889999999999999987776664 3333332221 25789999999998762211111000
Q sequence1 139 QEPVKPEEGRDMANRIGAFGYMECSAK-TKDGVREVFEMATRAALQ 183 (184)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~i~~~~~~~~~~~~~ 183 (184)
....... .+.++++|++ ++.++.++|.++.+.+.+
T Consensus 160 ---------~~~~~~~-~~~~~~~S~~~~~~~v~~~~~~l~~~~~~ 195 (220)
T 6IAN_E 160 ---------MPPKQLQ-GIRALETSLDYQSDNFKEAFDALVEQIIA 195 (220)
T ss_dssp ---------CC-TTTC-SSCEEEECSSSSCCCCHHHHHHHHHHHHH
T ss_pred ---------HHHHHHC-CCCEEEecccccCCcHHHHHHHHHHHHHH
Confidence 0001112 2578899999 999999999998887653
##### No 187 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2G77_B GTPase-activating protein GYP1, Ras-related protein; Protein transport, Gyp1 TBC domain; HET: MSE, GDP; 2.26A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=5.4e-21 Score=130.43 Aligned_cols=167 Identities=25% Similarity=0.472 Sum_probs=109.4 Template_Neff=11.500
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYD-RLRPLSYPDTD 81 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~ 81 (184)
.....++|+++|.+++|||||++++..........++..... ...+...+....+.+||++|.+.+. ..+..+...++
T Consensus 25 ~~~~~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 104 (198)
T 2G77_B 25 ARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 104 (198)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSHHHHTTTGGGGCTTCC
T ss_pred CccccEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCCcccEEEEEEEeCCcEEEEEEEeCCchHHHHHHHHHHHHccCC
Confidence 456778999999999999999999987654332222221111 1122233445678999999987664 56666778899
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
++++|+|+.+..++......+....... ....|+++|+||.|+....... ......++...+ ..++
T Consensus 105 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~------------~~~~~~~~~~~~-~~~~ 171 (198)
T 2G77_B 105 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVP------------TDLAQKFADTHS-MPLF 171 (198)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHTTCSCSSSCEEEEEECTTCGGGCCSC------------HHHHHHHHHHTT-CCEE
T ss_pred EEEEEeeCCChHHhhhHHHHHHHHHHHhccCCCCEEEEeecchhhhccCCC------------HHHHHHHHHHcC-CCEE
Confidence 9999999988766655544333332221 2367999999999987532110 011111222222 5788
Q sequence1 161 ECSAKT---KDGVREVFEMATRAALQ 183 (184)
Q Consensus 161 ~~s~~~---~~~i~~~~~~~~~~~~~ 183 (184)
.+|+++ +.++.++|.++.+.+.+
T Consensus 172 ~~s~~~~~~~~~i~~~~~~l~~~i~~ 197 (198)
T 2G77_B 172 ETSAKNPNDNDHVEAIFMTLAHKLKS 197 (198)
T ss_dssp ECCSSCGGGHHHHHHHHHHHHHHHHT
T ss_pred EeecCCCCCcccHHHHHHHHHHHHhc
Confidence 999998 78899999998887654
##### No 188 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3E5H_A Crystal Structure of Rab28 GTPase; Rab GTPase, SIGNALING PROTEIN, Cell; HET: GOL, GNP; 1.499A {Homo sapiens}
Probab=99.69 E-value=5.6e-21 Score=127.38 Aligned_cols=166 Identities=27% Similarity=0.359 Sum_probs=109.8 Template_Neff=12.400
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVD-GKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
..+..+|+++|.+++|||+|++++....+.....++..... ....... .....+.+||++|...+...+..++..+|+
T Consensus 3 ~~~~~~i~i~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 82 (178)
T 3E5H_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSEEEEEEEEEETTTEEEEEEEEEECGGGGGSSHHHHHHTTCSE
T ss_pred CcceEEEEEECCCCCCHHHHHHHHhhcccCCccCceeEEEEEEEEEEcCCCceEEEEEEeCCCCcccchhhHHHhccCcE
Confidence 45778999999999999999999986655433322221111 1111221 225678899999988777778888889999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 159 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
+++|+|+++..++......+....... ....|+++++||.|........ ......++...+ +.+
T Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~k~d~~~~~~~~------------~~~~~~~~~~~~-~~~ 149 (178)
T 3E5H_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIK------------PEKHLRFCQENG-FSS 149 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEEEECGGGGGGCCSC------------HHHHHHHHHHHT-CEE
T ss_pred EEEEEeCCChhhHHhHHHHHHHHHHhccCCCCCCEEEEEeeCcccccccccC------------HHHHHHHHHHcC-CcE
Confidence 999999998665555433222222111 1368899999999986532110 111112222222 567
Q sequence1 160 MECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 160 ~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
+.+|+.++.++.++|.++.+.+..
T Consensus 150 ~~~s~~~~~~i~~~~~~l~~~~~~ 173 (178)
T 3E5H_A 150 HFVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCCHHHHHHHHHHHHhc
Confidence 889999999999999998887653
##### No 189 #####
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>1ZD9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=5.6e-21 Score=129.25 Aligned_cols=166 Identities=20% Similarity=0.286 Sum_probs=110.6 Template_Neff=11.600
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
....++|+++|+.++|||+|++++....+.....++....+. ........+.+||++|++.+...+..++..+|+++
T Consensus 19 ~~~~~~i~i~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 95 (188)
T 1ZD9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR---KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE---EEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CccceEEEEECCCCCCHHHHHHHHHcCCCCCCccCCcceEEE---EeeeCcEEEEEEecCCCHHHHHHHHHHhcCCCEEE
Confidence 456789999999999999999999876544322222111111 12234567899999998888777777888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
+|+|+.+..++......+....... ....|+++++||.|+........ ... ......... ....++.+|
T Consensus 96 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~k~D~~~~~~~~~-~~~--------~~~~~~~~~-~~~~~~~~s 165 (188)
T 1ZD9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKE-LIE--------KMNLSAIQD-REICCYSIS 165 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHH-HHH--------HTTGGGCCS-SCEEEEECC
T ss_pred EEEeCCCHHHHHHHHHHHHHHhcChhhcCCCEEEEEeCCCCCCCCCHHH-HHH--------HcChhhhcC-CceEEEEEe
Confidence 9999998766665544444443321 13579999999999876321111 000 000001111 125788999
Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184)
++++.++.+++.++.+.+.+
T Consensus 166 ~~~~~~i~~~~~~l~~~~~~ 185 (188)
T 1ZD9_A 166 CKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp TTTCTTHHHHHHHHHHTCC-
T ss_pred cCCCccHHHHHHHHHHHHHh
Confidence 99999999999999887754
##### No 190 #####
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>6EKK_C DENN domain-containing protein 1A, Ras-related; DENND1A- DENN domain-containing protein 1A; HET: SO4, GDP, EDO; 1.82A {Homo sapiens}
Probab=99.69 E-value=5.9e-21 Score=127.15 Aligned_cols=165 Identities=30% Similarity=0.563 Sum_probs=109.4 Template_Neff=12.300
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
...+..+|+++|+.++||||+++++..........+...... .......+....+.+||++|...+...+..++..+++
T Consensus 2 ~~~~~~~i~l~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 81 (176)
T 6EKK_C 2 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 81 (176)
T ss_dssp CCSEEEEEEEECCTTSSHHHHHHHHCCCSSCCCCHHHHSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred CccccEEEEEECCCCCCHHHHHHHHhcCCCCCCccceeEEEEEEEEEEECCEEEEEEEEeCCCCccchhhhHHHccCCCE
Confidence 346788999999999999999999987654332222111111 1122233345678899999988777777778889999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++|+|+++..++.... .+...+.......|+++++||.|........ .......+.... ..++.+
T Consensus 82 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~k~d~~~~~~~~------------~~~~~~~~~~~~-~~~~~~ 147 (176)
T 6EKK_C 82 VIVVYDVTSAESFVNVK-RWLHEINQNCDDVCRILVGNKNDDPERKVVE------------TEDAYKFAGQMG-IQLFET 147 (176)
T ss_dssp EEEEEETTCHHHHHHHH-HHHHHHHHHCTTSEEEEEEECCCCGGGCCSC------------HHHHHHHHHHHT-CCEEEC
T ss_pred EEEEEeCCCHHHHHHHH-HHHHHHHHhCCCceEEEEEecCCCcccccCC------------HHHHHHHHHHhC-CcEEEc
Confidence 99999998876665543 2333333322367889999999987532210 011111122222 568899
Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184)
|++++.++.+++.++.+.+.
T Consensus 148 s~~~~~~i~~~~~~l~~~~~ 167 (176)
T 6EKK_C 148 SAKENVNVEEMFNCITELVL 167 (176)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 99999999999998877654
##### No 191 #####
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>2KSQ_A ADP-ribosylation factor 1; ARF, myristoylated, myristoyl, GTP, bicelle; HET: GTP, MYR, MTN; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=6e-21 Score=128.60 Aligned_cols=166 Identities=16% Similarity=0.187 Sum_probs=109.2 Template_Neff=11.300
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
......+|+++|++++|||||++++......... ++.. ............+.+||++|++.+...+..++..++++
T Consensus 13 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~i 88 (181)
T 2KSQ_A 13 FGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTI-PTIG---FNVECVQYCNISFTVWDVGGQDRIRSLWRHYYCNTEGV 88 (181)
T ss_dssp GTTTEEEEEEEECTTTCHHHHHHHHHHSSCCCCC-CCSS---EECCEEEETTEEEEEEEECCSHHHHGGGGGSCSCCSEE
T ss_pred cCCCCeEEEEEcCCCCChHHHHHHhhcCCCCccc-Cccc---EEEEEEEECCEEEEEEEcCCChHHHHHHHHHhcCCCEE
Confidence 3567789999999999999999999876553221 1111 11111122345789999999888877888888899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
++|+|+.+..++......+....... ....|+++|+||+|+........ .... ..... .....+.++.+
T Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~~-~~~~--------~~~~~-~~~~~~~~~~~ 158 (181)
T 2KSQ_A 89 IFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPEAMSAAE-ITEK--------LGLHS-IRNRPWFIQAT 158 (181)
T ss_dssp EEEEESSCTTTHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHH-HHHH--------TTTTT-CCSSCEEEEEC
T ss_pred EEEEECCChHhHHHHHHHHHHHhcChhhcCCeEEEEEeCCCCccCCCHHH-HHHH--------hCcHH-hcCCCcEEEEe
Confidence 99999988766555544444333221 23689999999999976321111 0000 00000 01112467789
Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184)
|++++.|+.++|.++.+.+.+
T Consensus 159 s~~~~~gi~~~~~~l~~~~~~ 179 (181)
T 2KSQ_A 159 CATSGEGLYEGLEWLSNCLKN 179 (181)
T ss_dssp BTTTTBTHHHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999998877643
##### No 192 #####
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>1R8S_A ADP-ribosylation factor 1/Cytohesin 2; PROTEIN TRANSPORT/EXCHANGE FACTOR, PROTEIN TRANSPORT-EXCHANGE; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8
Probab=99.69 E-value=6.3e-21 Score=126.22 Aligned_cols=161 Identities=17% Similarity=0.267 Sum_probs=106.0 Template_Neff=11.700
Q sequence1 9 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFS 88 (184)
Q Consensus 9 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (184)
++|+++|.+++|||||++++....+.... ++.. ............+.+||++|...+...+..++..++++++|++
T Consensus 1 ~~i~~~G~~~~GKssl~~~l~~~~~~~~~-~~~~---~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 76 (164)
T 1R8S_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG---FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCC-CCSS---CCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHhccCCCcccc-Ceee---EEEEEEEECCEEEEEEEeCCCcchHHHHHHHhccCCEEEEEEe
Confidence 47999999999999999999766543221 1111 1111222345678999999988887788888889999999999
Q sequence1 89 IDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 167 (184)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 167 (184)
++++.++......+....... ....|+++++||+|+........ ... ......... ..+.++.+|++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nk~D~~~~~~~~~-~~~--------~~~~~~~~~-~~~~~~~~s~~~~ 146 (164)
T 1R8S_A 77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE-ITD--------KLGLHSLRH-RNWYIQATCATSG 146 (164)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH-HHH--------HTTGGGCSS-CCEEEEECBTTTT
T ss_pred CCCHHHHHHHHHHHHHHHhcchhcCCEEEEEEeCccCCCCCCHHH-HHH--------HhCChhhCC-CceEEEEeeCCCC
Confidence 988655555444444433322 23578999999999876432111 100 000001111 2357889999999
Q sequence1 168 DGVREVFEMATRAALQ 183 (184)
Q Consensus 168 ~~i~~~~~~~~~~~~~ 183 (184)
.|+.+++.++.+.+.+
T Consensus 147 ~~i~~~~~~l~~~~~~ 162 (164)
T 1R8S_A 147 DGLYEGLDWLSNQLRN 162 (164)
T ss_dssp BTHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHHHHhc
Confidence 9999999999887654
##### No 193 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>5YMX_A Mutual gliding-motility protein MglA (E.C.3.6.5.2); Small Ras-like GTPase, Cytosolic, Myxococcus; HET: GDP, IMD, MPD, EDO; 1.35A {Myxococcus xanthus (strain DK 1622)}
Probab=99.69 E-value=6.9e-21 Score=129.93 Aligned_cols=163 Identities=26% Similarity=0.304 Sum_probs=106.4 Template_Neff=12.000
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV----------YVPTVFENYV-ADI-EVDGKQVELALWDTAGLEDYDRL 72 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~----------~~~t~~~~~~-~~~-~~~~~~~~~~i~D~~g~~~~~~~ 72 (184)
.....+|+++|..++|||+|++++........ ..++...... ... ...+....+.+||++|++.+...
T Consensus 9 ~~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 88 (203)
T 5YMX_A 9 REINCKIVYYGPGLCGKTTNLQYIYNKTAAETKGKLISLSTETDRTLFFDFLPLSLGEIRGFKTRFHLYTVPGQVFYDAS 88 (203)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCTTCCCBTTBEEEEEEEECCSCCSCHHH
T ss_pred CceeEEEEEEcCCCCCHHHHHHHHHhhcccccccceeeccCCCcceeEeeEEeeEEeccCCeEEEEEEEeCCCCCcchHh
Confidence 45678999999999999999999887654321 1111111110 001 11123567889999998888888
Q sequence1 73 RPLSYPDTDVILMCFSID------SPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEE 146 (184)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
+..++..+|++++|+|.+ ...++..... +...+.......|+++++||.|+..... ..+
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~piivv~~k~D~~~~~~--------------~~~ 153 (203)
T 5YMX_A 89 RKLILKGVDGVVFVADSQIERMEANMESLENLRI-NLAEQGYDLNKIPYVIQYNKRDLPNAVT--------------VEE 153 (203)
T ss_dssp HHHHTTTCSEEEEEEECBGGGHHHHHHHHHHHHH-HHHHTTCCGGGSCEEEEEECTTSTTBBC--------------HHH
T ss_pred HHHHhcCCCEEEEEEeCCcchhHHhHHHHHHHHH-HHHHccccCCCCCEEEEEeCCCCCCCCC--------------HHH
Confidence 888888999999999998 4444443322 2222222224689999999999865211 011
Q sequence1 147 GRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 147 ~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
...+....+ +.++.+|+.++.++.++|.++.+.+++
T Consensus 154 ~~~~~~~~~-~~~~~~S~~~~~~i~~~~~~l~~~i~~ 189 (203)
T 5YMX_A 154 MRKALNHRN-IPEYQAVAPTGVGVFDTLKAVAKLVLT 189 (203)
T ss_dssp HHHHHCSSC-CCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred HHHHHhhCC-CCEEEeeccCCCCHHHHHHHHHHHHHH
Confidence 111222222 578899999999999999999887754
##### No 194 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4ZI2_A Arl3 (E.C.3.6.5.2.), CCDC104/BARTL1; Complex, Arf-like GTPase, GTP-binding, BART-like; HET: GNP; 2.2A {Mus musculus}
Probab=99.69 E-value=7.1e-21 Score=129.32 Aligned_cols=164 Identities=18% Similarity=0.280 Sum_probs=109.1 Template_Neff=11.100
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
.....+|+++|..|+|||||++++........ .++... ...........+.+||++|...+...+..++..+++++
T Consensus 14 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~vi 89 (190)
T 4ZI2_A 14 PDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGF---NIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILI 89 (190)
T ss_dssp GGGEEEEEEEECTTSSHHHHHHHHTTCCCTTC-CCCSSE---EEEEEEETTEEEEEEEECCSTTTGGGGGGGTTTCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCCcC-CCeeeE---EEEEEcCceEEEEEEeCCCCHHHHHHHHHHcCCCCEEE
Confidence 45678999999999999999999986643321 111111 11112233467899999998877777888888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
+|+|.++..++......+........ ...|+++++||+|+..........+. ... .. .......++.+|
T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~-----~~~----~~-~~~~~~~~~~~S 159 (190)
T 4ZI2_A 90 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEG-----LNL----HT-IRDRVWQIQSCS 159 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHH-----TTG----GG-CCSSCEEEEECC
T ss_pred EEEECCChHhHHHHHHHHHHHHHhCCCCCCcEEEEEECcccCChHHHHHHHHH-----hCH----HH-HHcCCceEEEcc
Confidence 99999987766665555544443221 35789999999998754321110000 000 00 001124678899
Q sequence1 164 AKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~ 182 (184)
++++.|+.++|.++.+.+.
T Consensus 160 a~~~~~i~~~~~~l~~~~~ 178 (190)
T 4ZI2_A 160 ALTGEGVQDGMNWVCKNVN 178 (190)
T ss_dssp TTTCTTHHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988764
##### No 195 #####
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>5DE3_A ARF-like GTPase; G-protein, ADP ribosylation factor like; HET: GNP; 1.417A {Chlamydomonas reinhardtii}
Probab=99.68 E-value=8.6e-21 Score=126.16 Aligned_cols=160 Identities=19% Similarity=0.284 Sum_probs=107.1 Template_Neff=11.700
Q sequence1 9 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFS 88 (184)
Q Consensus 9 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (184)
.||+++|+.++|||||++++........... ..............+.+||++|.+.+...+..++.+++++++|+|
T Consensus 1 ~ki~~~G~~~~GKs~l~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i~~v~d 76 (169)
T 5DE3_A 1 ARILVLGLDNAGKTTILKALSEEDITTITPT----QGFNIKSLSRDGFNLKIWDIGGQKSIRPYWRNYFDQTDALIYVID 76 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTCCCTTCCCC----SSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCCEEEEEEE
T ss_pred CeEEEECCCCCChHHHHHHHccCCCCCCCCc----cceEEEEEEeCCEEEEEEECCCCcchHHHHHHHhccCCEEEEEEE
Confidence 4799999999999999999987654322111 001111122334678999999988888888888899999999999
Q sequence1 89 IDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 167 (184)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 167 (184)
+.+..++......+....... ....|+++++||.|+...... ........ .... ......++.+|++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~~k~D~~~~~~~-~~~~~~~~--------~~~~-~~~~~~~~~~s~~~~ 146 (169)
T 5DE3_A 77 SADSKRLSESEFELTELLQEEKMTGVPLLVFANKQDLVGALAA-DEIASTLD--------LTSI-RDRPWQIQACSAKQG 146 (169)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH-HHHHHHTT--------GGGC-CSSCEEEEECCTTTC
T ss_pred CCChhhHHHHHHHHHHHHhchhcCCCCEEEEEECCCCCCCCCH-HHHHHhcC--------chhh-CCCceEEEEccCCCC
Confidence 988766665544444443322 236899999999999774211 11111000 0000 112257888999999
Q sequence1 168 DGVREVFEMATRAAL 182 (184)
Q Consensus 168 ~~i~~~~~~~~~~~~ 182 (184)
.|+.+++.++.+.+.
T Consensus 147 ~~v~~~~~~l~~~~~ 161 (169)
T 5DE3_A 147 TGLKEGMEWMMKQVK 161 (169)
T ss_dssp TTHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999988765
##### No 196 #####
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>3Q7Q_A GTP-binding protein RAD; G-domain, G-protein, Cav2 beta, SIGNALING; HET: GNP; 2.3A {Homo sapiens}
Probab=99.68 E-value=9.1e-21 Score=125.31 Aligned_cols=162 Identities=25% Similarity=0.293 Sum_probs=95.4 Template_Neff=12.100
Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 87 (184)
Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (184)
.++|+++|.+++|||+|++++..........+ ............+....+.+||++|.......+..+...++++++|+
T Consensus 2 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3Q7Q_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEA-AGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSSCC--------CEEEEEEEETTEEEEEEEECTTC-------------CCSEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHhcCCCCCCcccc-CCceeeEEEEECCceEEEEEEEeCCCCCCcccchhhhhcCCEEEEEE
Confidence 57899999999999999999886543322111 11111122223334457889999998777666777777899999999
Q sequence1 88 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 166 (184)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 166 (184)
++.+..++....+.+....... ....|+++++||+|+....... ......++...+ ..++++|+.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~nk~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~s~~~ 147 (166)
T 3Q7Q_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVS------------VDEGRACAVVFD-CKFIETSAAL 147 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHTTCCSSCCCEEEEEECTTCCSSCCSC------------HHHHHHHHHHTT-CEEEECBTTT
T ss_pred ECCchHHHHHHHHHHHHHHHhcCCCCCCEEEEEehHHccCCeeeC------------HHHHHHHHHHhC-CeEEEEeccc
Confidence 9998666555433333222211 2368999999999987642110 011111112222 5688999999
Q sequence1 167 KDGVREVFEMATRAALQ 183 (184)
Q Consensus 167 ~~~i~~~~~~~~~~~~~ 183 (184)
+.++.++|+++.+.+.+
T Consensus 148 ~~~i~~~~~~l~~~i~~ 164 (166)
T 3Q7Q_A 148 HHNVQALFEGVVRQIRL 164 (166)
T ss_dssp TBSHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999887653
##### No 197 #####
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>1KSH_A arf-like protein 2, RETINAL ROD; small GTPase, small GTP-binding protein; HET: GDP; 1.8A {Mus musculus} SCOP: c.37.1.8
Probab=99.68 E-value=9.2e-21 Score=128.29 Aligned_cols=165 Identities=15% Similarity=0.213 Sum_probs=106.4 Template_Neff=11.200
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
......+|+++|+.++|||||++++.+...... .++.... ....+.....+.+||++|+..+...+..++..++++
T Consensus 14 ~~~~~~~i~ivG~~~~GKttl~~~l~~~~~~~~-~~~~~~~---~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~ 89 (186)
T 1KSH_A 14 QKERELRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLGFN---IKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGL 89 (186)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHTTCCCSSC-CCCSSEE---EEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEE
T ss_pred ccCCCEEEEEECCCCCCHHHHHHHhcCCCCCCC-CCcCCeE---EEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEE
Confidence 346678999999999999999999875543211 1111111 111222346789999999887777777788899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
++++++++..++......+....... ....|+++++||.|+...... ....+... ...... ..++++++
T Consensus 90 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~-~~~~~~~~--------~~~~~~-~~~~~~~~ 159 (186)
T 1KSH_A 90 IWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC-NAIQEALE--------LDSIRS-HHWRIQGC 159 (186)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-HHHHHHTT--------GGGCCS-SCEEEEEC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhHHhcCCEEEEEEECCCCCCCCCH-HHHHHHcc--------chhhhC-CcEEEEEe
Confidence 99999998766655544444333221 235899999999998763211 11110000 000111 12568899
Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184)
|++++.|+.+++.++.+.+.
T Consensus 160 S~~~~~~i~~~~~~l~~~~~ 179 (186)
T 1KSH_A 160 SAVTGEDLLPGIDWLLDDIS 179 (186)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999887664
##### No 198 #####
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>5U4U_A MGC81300 protein; GTPase, pseudoGTPase, G domain, Rho; HET: MLI; 1.9A {Xenopus laevis}
Probab=99.68 E-value=9.3e-21 Score=127.95 Aligned_cols=153 Identities=16% Similarity=0.207 Sum_probs=93.7 Template_Neff=9.600
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLE--DYDRLRPLSYPDT 80 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~--~~~~~~~~~~~~~ 80 (184)
......++|+++|..++||| +.++....+.. ...+..++..+.+.+||++|++ .+...... +..+
T Consensus 3 ~~~~~~~ki~vlG~~~vGKt--~~~~~~~~~~~----------~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~-~~~~ 69 (178)
T 5U4U_A 3 DPNVDRINLVILGRDGLARE--LANEIRALCTN----------DDKYVIDGKMYELSLRPIEGNVRLPVNSFQTS-TFQP 69 (178)
T ss_dssp CTTSCEEEEEEECTTTHHHH--HHHHHHHTSCT----------TSEEEETTEEEEEEEEEECSCTTSGGGCSCBT-TBCC
T ss_pred CCCcceEEEEEECChhHHHH--HHHHHHHHhcC----------CceEEECCEEEEEEEEecCCCcCCCcccccCC-ccCC
Confidence 34567899999999999999 22222222211 0112234556788999999987 34444444 6789
Q sequence1 81 DVILMCFSIDSPDSLENIPEKWTPEVKH-------FCPNVPIILV-GNKKD-LRNDEHTRRELAKMKQEPVKPEEGRDMA 151 (184)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~-------~~~~~~~~vv-~nK~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (184)
|++++|+| +..++..+..++...... .....|+++| +||+| +...... ........++
T Consensus 70 d~~i~vyd--~~~Sf~~i~~~~~~i~~~~~~~~~~~~~~~p~vlv~gnK~D~~~~~~~~-----------v~~~~~~~~a 136 (178)
T 5U4U_A 70 HGCLCLYN--SKESLSYVVESIEKSRESSLGRKENHLINLPLTLILVNRRGDTSSETAH-----------SLIQHGQQVA 136 (178)
T ss_dssp SEEEEEES--SHHHHHHHHHHHHHHC----------CCSSCEEEEECCC-------CHH-----------HHHHHHHHHH
T ss_pred CEEEEEeC--CHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEEeeCCCCCChhhhH-----------HHHHHHHHHH
Confidence 99999999 677888875555444332 1246788888 99999 6322111 1112222233
Q sequence1 152 NRIGAFGYMECSAKTK--------DGVREVFEMATRAAL 182 (184)
Q Consensus 152 ~~~~~~~~~~~s~~~~--------~~i~~~~~~~~~~~~ 182 (184)
...+ ..++++||+++ .++.++|.++++.+.
T Consensus 137 ~~~~-~~~~e~Sa~~~~~~~~~~~~~v~~~f~~l~~~~~ 174 (178)
T 5U4U_A 137 SKLQ-CVFLDAASTGLGYGRNINEKQISLILRGLLESKR 174 (178)
T ss_dssp HHHT-CEEEETTTCC----CCCCHHHHHHHHHHHHHHHH
T ss_pred HHcC-CEEEEcCccCCCcccCCCHHHHHHHHHHHHHHHH
Confidence 3333 57889999999 999999999887664
##### No 199 #####
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>5HZH_A Rac1 containing C450A mutant LOV2; Signaling protein, Photoswitch, Chimera; HET: FMN, GTP; 2.6A {Homo sapiens}
Probab=99.68 E-value=9.4e-21 Score=137.92 Aligned_cols=127 Identities=59% Similarity=1.020 Sum_probs=87.1 Template_Neff=12.400
Q sequence1 57 ELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAK 136 (184)
Q Consensus 57 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~ 136 (184)
.+.+||++|+..+...+..++..++++++++|+++..++......|...+.......|+++|+||+|+............
T Consensus 204 ~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~ 283 (332)
T 5HZH_A 204 NLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKE 283 (332)
T ss_dssp EEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHCCCCCHHHHHHHCTTCCEEEEEECGGGTTCHHHHHHHHT
T ss_pred EEEEECCCCchhhhccCcccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEecccccCCHHHHHHHHH
Confidence 45578999987776666666678899999999999877777654555555444356999999999999865432222111
Q sequence1 137 MKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
.....+.......++.....+.++++||.++.|+..+|.++.+.++.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 330 (332)
T 5HZH_A 284 KKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHhCCCEEEEcccCCCCCHHHHHHHHHHHhhC
Confidence 11111222223333444444679999999999999999999988764
##### No 200 #####
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>3BC1_E Ras-related protein Rab-27A (E.C.3.6.5.2), Synaptotagmin-like; Rab27, GTPase, Rab, signaling protein; HET: GNP; 1.8A {Mus musculus}
Probab=99.68 E-value=9.8e-21 Score=128.69 Aligned_cols=165 Identities=28% Similarity=0.459 Sum_probs=106.8 Template_Neff=11.700
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIE----------VDGKQVELALWDTAGLEDYDRLR 73 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~-~~~----------~~~~~~~~~i~D~~g~~~~~~~~ 73 (184)
....++|+++|.+++|||+|++++..........++....... ... .......+.+||++|++++...+
T Consensus 8 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 87 (195)
T 3BC1_E 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhCCCCCCCCceeeeEEEEEEEEEEecCCCCCCCCCCcEEEEEEEECCCCHHHHHhc
Confidence 3557899999999999999999998665433222211111100 000 01234578999999998888778
Q sequence1 74 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN 152 (184)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
..+...++++++|+++.+..++......+....... ....|+++++||.|........ ......++.
T Consensus 88 ~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ivv~~k~D~~~~~~~~------------~~~~~~~~~ 155 (195)
T 3BC1_E 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVK------------EEEARELAE 155 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSC------------HHHHHHHHH
T ss_pred HHHHccCCEEEEEeeCCChHHHHHHHHHHHHHHHhccCCCCcEEEEEeCccchhhcCCC------------HHHHHHHHH
Confidence 888889999999999987655555433232222211 1357899999999987532110 011111222
Q sequence1 153 RIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 153 ~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
..+ ..++++|+.++.++.++|.++.+.+.
T Consensus 156 ~~~-~~~~~~S~~~~~~i~~~~~~l~~~~~ 184 (195)
T 3BC1_E 156 KYG-IPYFETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp HHT-CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HhC-CCEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 222 56889999999999999988887653
##### No 201 #####
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>3BH7_A ADP-ribosylation factor-like protein 3, Protein; Protein-Protein complex, GTPase Activating protein; HET: GDP; 1.9A {Mus musculus} SCOP: c.37.1.8
Probab=99.68 E-value=1e-20 Score=124.64 Aligned_cols=161 Identities=19% Similarity=0.287 Sum_probs=105.7 Template_Neff=12.300
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
...++|+++|++|+|||||++++......... ++.. ............+.+||++|.+.+...+..++..++++++
T Consensus 2 ~~~~~v~~~G~~~~GKstl~~~l~~~~~~~~~-~~~~---~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 77 (164)
T 3BH7_A 2 GSEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQG---FNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIY 77 (164)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHTTCCCSCCC-CCSS---EEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCCCccC-Ccce---EEEEEEcCCceEEEEEeCCCCHHHHHHHHHHhcCCCEEEE
Confidence 45689999999999999999999876543211 1111 1111122345678899999988887778888889999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
|+|+++..++......+....... ....|+++++||.|+............ .. . .........++.+|+
T Consensus 78 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~k~D~~~~~~~~~~~~~-~~----~-----~~~~~~~~~~~~~S~ 147 (164)
T 3BH7_A 78 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEG-LN----L-----HTIRDRVWQIQSCSA 147 (164)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHH-TT----G-----GGCCSSCEEEEECCT
T ss_pred EEeCCChHhHHHHHHHHHHHHHhCCCCCCCEEEEEEchhcCChHhHHHHHHH-cC----h-----HHHhcCCceEEEeeC
Confidence 999998766655544444443322 235789999999999764321111000 00 0 000011256888999
Q sequence1 165 KTKDGVREVFEMATRA 180 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~ 180 (184)
.++.|+.+++.++.+.
T Consensus 148 ~~~~~i~~~~~~l~~~ 163 (164)
T 3BH7_A 148 LTGEGVQDGMNWVCKN 163 (164)
T ss_dssp TTCTTHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999988765
##### No 202 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2FH5_B Signal recognition particle receptor alpha; Endomembrane targeting, GTPase, GAP, longin; HET: GTP; 2.45A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=1.2e-20 Score=130.52 Aligned_cols=176 Identities=14% Similarity=0.202 Sum_probs=100.2 Template_Neff=11.100
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR-LRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~ 82 (184)
.+....+|+++|.+++|||||++++....+.....+........... ......+.+||++|+..+.. .+..++..+|+
T Consensus 3 ~~~~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ 81 (214)
T 2FH5_B 3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp -----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHhCCCCCCeeecccceeeEEee-CCCCceEEEEECCCChHHHHHHHHHHhhhCCE
Confidence 35667899999999999999999998765543221111111111111 12346789999999887765 67777788999
Q sequence1 83 ILMCFSIDSPDS-LENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDEHTRRELAKMKQEP--VKP------------ 144 (184)
Q Consensus 83 ~i~v~d~~~~~s-~~~~~~~~~~~~~~~---~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~--~~~------------ 144 (184)
+++|+|+.+..+ +......+....... ....|+++++||.|+................. ...
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~~K~D~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 161 (214)
T 2FH5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEehhhhhHHHHHHHHHHHHHHHhHHhhcCCCeEEEEEECccccchhCHHHHHHHHHHHHHHHHHHhhcCCCcCCCC
Confidence 999999987654 444433333332211 12678999999999976432211111111000 000
Q sequence1 145 ----------EEGRDMANRIGAFGYMECSAKTKDG------VREVFEMATRA 180 (184)
Q Consensus 145 ----------~~~~~~~~~~~~~~~~~~s~~~~~~------i~~~~~~~~~~ 180 (184)
.....++.......++++|++++.| +.++++|+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g~~~~~~~~~l~~~l~~~ 213 (214)
T 2FH5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CCCchhcCCCCCcccccCCCceEEEEEeEeecCCCCCCcccHHHHHHHHHhh
Confidence 0000111112235689999999999 99999988654
##### No 203 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2HXS_A Ras-related protein Rab-28; GTPase, Ras, Rab, SIGNALING PROTEIN; HET: G3D; 1.1A {Homo sapiens}
Probab=99.67 E-value=1.2e-20 Score=125.59 Aligned_cols=165 Identities=28% Similarity=0.405 Sum_probs=109.1 Template_Neff=12.500
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVD-GKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
..+..+|+++|.+++|||+|++++....+.....++..... ....... +....+.+||++|...+...+..++..+|+
T Consensus 3 ~~~~~~i~~~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 82 (178)
T 2HXS_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CcceeEEEEECCCCCCHHHHHHHHhhcccCCCccceeEEEEEEEEEecCCCceEEEEEEeCCCccccchhhHHHhccCCE
Confidence 45678999999999999999999986654433222221111 1112221 225678899999988777777788889999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFG 158 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
+++|+|+++..++..... +...+... ....|+++++||.|........ ......++...+ +.
T Consensus 83 ~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iv~~k~d~~~~~~~~------------~~~~~~~~~~~~-~~ 148 (178)
T 2HXS_A 83 VLLVYDITNYQSFENLED-WYTVVKKVSEESETQPLVALVGNKIDLEHMRTIK------------PEKHLRFCQENG-FS 148 (178)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSC------------HHHHHHHHHHHT-CE
T ss_pred EEEEEeCCChHHHHhHHH-HHHHHHHHhccCCCCCEEEEEEechhhcccccCC------------HHHHHHHHHHcC-CC
Confidence 999999998666555433 22222211 2367899999999986532110 111112222222 56
Q sequence1 159 YMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 159 ~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
++.+|+.++.++.+++.++...+.+
T Consensus 149 ~~~~s~~~~~~i~~~~~~l~~~~~~ 173 (178)
T 2HXS_A 149 SHFVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred eEEEecCCCCCHHHHHHHHHHHHhc
Confidence 7789999999999999998877653
##### No 204 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2F7S_A Ras-related protein Rab-27B; Rab27b, G-protein, Rab, Structural Genomics; HET: GDP; 2.7A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=1.4e-20 Score=129.93 Aligned_cols=167 Identities=28% Similarity=0.439 Sum_probs=108.8 Template_Neff=11.800
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVD----------GKQVELALWDTAGLEDYDR 71 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~----------~~~~~~~i~D~~g~~~~~~ 71 (184)
+...+.++|+++|++++|||||++++..........++..... ....... .....+.+||++|.+.+..
T Consensus 20 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 99 (217)
T 2F7S_A 20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS 99 (217)
T ss_dssp -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred CCcceeEEEEEECCCCCCHHHHHHHHhCCCCCccccccceeeeeEeEEEEcCCCCCCCCCCceEEEEEEEeCCCChhhHH
Confidence 3457789999999999999999999987654332222111111 1111111 1135778999999887777
Q sequence1 72 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 150 (184)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
.+..++..++++++|+|+.+..++......+....... ....|+++++||.|+....... .......
T Consensus 100 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ivv~~k~d~~~~~~~~------------~~~~~~~ 167 (217)
T 2F7S_A 100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVN------------ERQAREL 167 (217)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSC------------HHHHHHH
T ss_pred hhHHHhccCCEEEEEEeCCChHHHHHHHHHHHHHHHhccCCCCeEEEEEeCccCCChhhCC------------HHHHHHH
Confidence 77778889999999999988766655543333322221 2467899999999986532110 1111112
Q sequence1 151 ANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 151 ~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
+...+ +.++.+|+.++.++.+++.++.+.+.
T Consensus 168 ~~~~~-~~~~~~s~~~~~~i~~~~~~l~~~~~ 198 (217)
T 2F7S_A 168 ADKYG-IPYFETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp HHHTT-CCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHhC-CCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 22222 57889999999999999998887764
##### No 205 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3Q72_A GTP-binding protein RAD; G-domain, G-protein, Cav2 beta, SIGNALING; HET: GNP; 1.655A {Homo sapiens}
Probab=99.67 E-value=1.4e-20 Score=124.14 Aligned_cols=162 Identities=25% Similarity=0.294 Sum_probs=91.4 Template_Neff=12.400
Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 87 (184)
Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (184)
.++|+++|.+++|||||++++..........+. ...........+....+.+||++|.......+..+...++++++|+
T Consensus 2 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3Q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred ceEEEEeCCCCCCHHHHHHHhCCCCCCCccccC-CceeEEEEEECCeeEEEEEEEecCCCCCccccccccccCCEEEEEE
Confidence 578999999999999999998865433221111 1111112223334457789999998777666666777899999999
Q sequence1 88 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 166 (184)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 166 (184)
|+.+..++......+....... ....|+++++||.|+........ ..........+ +.++.+|+++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vivv~nk~D~~~~~~~~~------------~~~~~~~~~~~-~~~~~~s~~~ 147 (166)
T 3Q72_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSV------------DEGRACAVVFD-CKFIETSAAL 147 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCH------------HHHHHHHHHTT-CEEEECBGGG
T ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCCCEEEEeechHcCCccccCH------------HHHHHHHHHhC-CeEEEEEccc
Confidence 9998766655433333322211 23689999999999986422110 01111111222 5688899999
Q sequence1 167 KDGVREVFEMATRAALQ 183 (184)
Q Consensus 167 ~~~i~~~~~~~~~~~~~ 183 (184)
+.++.++|.++.+.+.+
T Consensus 148 ~~~~~~~~~~l~~~~~~ 164 (166)
T 3Q72_A 148 HHNVQALFEGVVRQIRL 164 (166)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999887654
##### No 206 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3Q7Q_B GTP-binding protein RAD; G-domain, G-protein, Cav2 beta, SIGNALING; HET: GNP; 2.3A {Homo sapiens}
Probab=99.67 E-value=1.4e-20 Score=124.14 Aligned_cols=162 Identities=25% Similarity=0.294 Sum_probs=93.1 Template_Neff=12.400
Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 87 (184)
Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (184)
.++|+++|.+++|||||++++..........+. ...........+....+.+||++|.......+..+...++++++|+
T Consensus 2 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3Q7Q_B 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHCC----------CCEEEEEEEETTEEEEEEEECTTC-------------CCSEEEEEE
T ss_pred ceEEEEeCCCCCCHHHHHHHhCCCCCCCccccC-CceeEEEEEECCeeEEEEEEEecCCCCCccccccccccCCEEEEEE
Confidence 578999999999999999998865433221111 1111112223334457789999998777666666777899999999
Q sequence1 88 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 166 (184)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 166 (184)
|+.+..++......+....... ....|+++++||.|+........ ..........+ +.++.+|+++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vivv~nk~D~~~~~~~~~------------~~~~~~~~~~~-~~~~~~s~~~ 147 (166)
T 3Q7Q_B 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSV------------DEGRACAVVFD-CKFIETSAAL 147 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHTC----CCCEEEEEECTTCCSSCCSCH------------HHHHHHHHHTT-CEEEECBTTT
T ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCCCEEEEeechHcCCccccCH------------HHHHHHHHHhC-CeEEEEEccc
Confidence 9998766655433333322211 23689999999999986422110 01111111222 5688899999
Q sequence1 167 KDGVREVFEMATRAALQ 183 (184)
Q Consensus 167 ~~~i~~~~~~~~~~~~~ 183 (184)
+.++.++|.++.+.+.+
T Consensus 148 ~~~~~~~~~~l~~~~~~ 164 (166)
T 3Q7Q_B 148 HHNVQALFEGVVRQIRL 164 (166)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999887654
##### No 207 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>5C1T_B Small GTPase EhRabX3; P-loop containing nucleotide triphosphate hydrolases; HET: GTP; 2.801A {Entamoeba histolytica}
Probab=99.67 E-value=1.4e-20 Score=141.39 Aligned_cols=161 Identities=19% Similarity=0.318 Sum_probs=108.7 Template_Neff=10.600
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
....+++++|.+++|||++++++............ ..............+.+||+||++.+......++..+|++++
T Consensus 220 ~~~~~i~~~g~~~~gKs~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~i~i~D~pG~~~~~~~~~~~~~~~d~~l~ 296 (391)
T 5C1T_B 220 DIKIRMLMVGDQNVGKTTFIRKFALQDPTGHDFMN---AITTRFEMEKIKYEIIMIDWGFYNKLLQTNPAISRTIEAILI 296 (391)
T ss_dssp CEEEEEEECCSCSSSSTTTGGGGCCCCC---CCCC---CCEEEEECSSSEEEEEECCSHHHHHHHHHCTTHHHHCCEEEE
T ss_pred ccceeEEEeCCCCCChHHHHHHHhcCCCCCcccce---eeEEEEEecceEEEEEEEecchhHhHHhhchhhcCCCcEEEE
Confidence 45679999999999999999999866432111110 011111222234578899999998887777778889999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184)
|+|+++..++......|...+....+..|+++|+||+|+....... ..+...++...+ ..++++||+
T Consensus 297 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~nK~Dl~~~~~~~------------~~~~~~~~~~~~-~~~~~~Sa~ 363 (391)
T 5C1T_B 297 VYDITNEESFQNIHRKYYPLINNKFSDVAGVIVGYKTDLEAQRKIT------------MGDALTLADWLG-YKYVEMSSK 363 (391)
T ss_dssp ECCTTCCCSSSTHHHHHC-CTTCCEEECCCSSCC-CCTHHHHHSSS------------CCC-CCCTTCST-TTCGGGHHH
T ss_pred EEECCChHhHHHHHHHHHHHHHhhCCCCeEEEEEechHHhhcCCCC------------HHHHHHHHHHHC-CEEEEecCC
Confidence 9999987777766555555554433568999999999997632210 111122233333 568999999
Q sequence1 166 TKDGVREVFEMATRAAL 182 (184)
Q Consensus 166 ~~~~i~~~~~~~~~~~~ 182 (184)
+++|+.++|.++.+.+.
T Consensus 364 ~~~~i~~l~~~l~~~~~ 380 (391)
T 5C1T_B 364 DTEDHSSIIKALAHSIR 380 (391)
T ss_dssp HHHHHHHHHTTTTTTCC
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999998877654
##### No 208 #####
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>1M2O_B protein transport protein SEC23/GTP-binding protein; zinc-finger, beta barrel, vWA domain; HET: GNP; 2.5A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.67 E-value=1.5e-20 Score=127.64 Aligned_cols=169 Identities=18% Similarity=0.269 Sum_probs=103.5 Template_Neff=11.300
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
.....+|+++|++++|||||++++........... . .............+.+||+||+..+...+..++..+++++
T Consensus 20 ~~~~~~i~~vG~~~~GKstli~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii 95 (190)
T 1M2O_B 20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPT-W---HPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ----CEEEEEESTTSSHHHHHHHHHHSCCCCCCCC-C---SCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhcCCcCCCCCC-C---CCceeEeeeCCEEEEEEecCCCHHHHHHHHHHCccCCEEE
Confidence 34678999999999999999999987654321110 0 0001112223467899999998877777777888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
+|+|+++..++......+....... ....|+++++||.|+...... ......... ........+... ....++.+|
T Consensus 96 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~nK~D~~~~~~~-~~~~~~l~~-~~~~~~~~~~~~-~~~~~~~~s 172 (190)
T 1M2O_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSE-AELRSALGL-LNTTGSQRIEGQ-RPVEVFMCS 172 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH-HHHHHHTTC-SSCCC---CCSS-CCEEEEECB
T ss_pred EEEECCChhhHHHHHHHHHHHHccccccCCCEEEEEECCCCCCCCCH-HHHHHHhch-hhccCCCCCCCC-ccEEEEEee
Confidence 9999988765555433333332221 136899999999999653211 111110000 000000011111 225788999
Q sequence1 164 AKTKDGVREVFEMATRA 180 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~ 180 (184)
+.++.|+.+++.++.+.
T Consensus 173 a~~~~~i~~~~~~l~~~ 189 (190)
T 1M2O_B 173 VVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTTBSHHHHHHHHHTT
T ss_pred cccccCHHHHHHHHHhh
Confidence 99999999999988764
##### No 209 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4V0K_B ARF-LIKE SMALL GTPASE; HYDROLASE; HET: GDP, CD; 1.438A {CHLAMYDOMONAS REINHARDTII}
Probab=99.67 E-value=1.5e-20 Score=124.86 Aligned_cols=164 Identities=19% Similarity=0.226 Sum_probs=104.9 Template_Neff=11.800
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
.....+|+++|..++|||||++++........ ..++... ...........+.+||++|...+...+..++..+|++
T Consensus 3 ~~~~~~i~l~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~i 79 (169)
T 4V0K_B 3 ASKKVNVLVVGLDNSGKTTIIERLKPRPRQAAEVAPTVGF---TVDEVEKGPLTFTVFDMSGAGRYRTLWEQYYREADAV 79 (169)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHSCCCCCCSCCCCCCSS---CCEEEEETTEEEEECCCCSGGGTHHHHHTTSTTCSEE
T ss_pred CccceEEEEEcCCCCCchHHHHHHcCCCccCCCCCCccce---EEEEEEeCCEEEEEEEcCCChhhHHHHHHHHhhCCEE
Confidence 45679999999999999999999986543221 1111111 1111223356789999999888877888888899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
++|++.++...+......+....... ....|+++++||.|+............ ........ ....++++
T Consensus 80 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nk~d~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~ 149 (169)
T 4V0K_B 80 VFVVDSADKLRMVVARDEMEHMLKHSNMRKVPILYFANKKDLPVAMPPVEIAQA---------LGLDDIKD-RPWQIVPS 149 (169)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCTTCCSCCEEEEEECTTSTTCCCHHHHHHH---------HTGGGCCS-SCEEEEEC
T ss_pred EEEEECCCcccHHHHHHHHHHHHhcccccCCCEEEEEECCCCCCCCCHHHHHHH---------cCChhhCC-CCeEEEEC
Confidence 99999998765554443333332221 135899999999998653211110000 00000011 12468899
Q sequence1 163 SAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~ 181 (184)
|++++.|+.++++++...+
T Consensus 150 s~~~~~~i~~~~~~l~~~~ 168 (169)
T 4V0K_B 150 NGLTGEGVDKGIDWLAERL 168 (169)
T ss_dssp CTTTCTTHHHHHHHHHHHC
T ss_pred CCCCCCcHHHHHHHHHHhc
Confidence 9999999999999987654
##### No 210 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1FZQ_A ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 3; Protein-GDP complex without magnesium, ARF; HET: GDP, SO4, MES; 1.7A {Mus musculus} SCOP: c.37.1.8
Probab=99.67 E-value=1.7e-20 Score=125.66 Aligned_cols=165 Identities=19% Similarity=0.300 Sum_probs=107.4 Template_Neff=12.100
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
.....+|+++|+.++|||||++++........ .++.... ..........+.+||++|...+...+..++..+++++
T Consensus 13 ~~~~~~i~~~G~~~~GKss~~~~l~~~~~~~~-~~~~~~~---~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~i 88 (181)
T 1FZQ_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFN---IKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-EEETTEE---EEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCCceEEEEEcCCCCCHHHHHHHHccCCCCcC-CCCcceE---EEEEEeCCEEEEEEECCCCcchHHHHHHHhcCCCEEE
Confidence 35568999999999999999999987654321 1111111 1112233467889999998877777777888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
+++|+++..++......+....... ....|+++++||.|+........ ..+. .. ..........++++|
T Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~k~D~~~~~~~~~-~~~~----~~-----~~~~~~~~~~~~~~S 158 (181)
T 1FZQ_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASE-IAEG----LN-----LHTIRDRVWQIQSCS 158 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHH-HHHH----TT-----GGGCCSSCEEEEECC
T ss_pred EEEeCCCcccHHHHHHHHHHHHhcccccCCCEEEEEeCcCcCCCCCHHH-HHHH----cC-----hHHhcCCeEEEEECc
Confidence 9999987766655544444433322 23579999999999976432111 1000 00 000011124688899
Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184)
+.++.|+.+++.++.+.+.+
T Consensus 159 ~~~~~~i~~~~~~i~~~~~~ 178 (181)
T 1FZQ_A 159 ALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp TTTCTTHHHHHHHHHHTC--
T ss_pred CCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999887643
##### No 211 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4CYM_B RAS-RELATED PROTEIN RAB-32 (E.C.3.6.5.2), ANKYRIN; TRANSPORT PROTEIN, VARP, RAB-EFFECTOR, RAB; HET: GCP; 2.8A {HOMO SAPIENS}
Probab=99.67 E-value=1.8e-20 Score=130.67 Aligned_cols=166 Identities=22% Similarity=0.370 Sum_probs=109.1 Template_Neff=11.600
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDG-KQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
....++|+++|..++|||+|++++..........++..... .......+ ....+.+||++|...+...+..++..+|+
T Consensus 27 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ 106 (230)
T 4CYM_B 27 REHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGLERFGNMTRVYYKEAVG 106 (230)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHCCCCSSCCCCCSEEEEEEEEECSSSCEEEEEEEEECGGGGGSSCHHHHHTTCCE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCccccCCceeeeEEEEEEecCCCCeEEEEEEeCCCCchhhchhHHHhccCCE
Confidence 35678999999999999999999987654332222211111 11111111 22578999999998887778878889999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFG 158 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
+++|+++.+..++......+....... ....|+++|+||.|+...... .......++...+...
T Consensus 107 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~~k~D~~~~~~~------------~~~~~~~~~~~~~~~~ 174 (230)
T 4CYM_B 107 AFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLANKCDQNKDSSQ------------SPSQVDQFCKEHGFAG 174 (230)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCBCTTSCBCCEEEEEECTTSCCSSCC------------CHHHHHHHHHHTTCCE
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEECCCCCCCCCC------------CHHHHHHHHHHcCCCe
Confidence 999999998766655543332221111 236899999999998653211 0111122223333357
Q sequence1 159 YMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 159 ~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
++++|+.++.++.+++.++...+.
T Consensus 175 ~~~~s~~~~~~i~~~~~~l~~~~~ 198 (230)
T 4CYM_B 175 WFETSAKDNINIEEAARFLVEKIL 198 (230)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEccCCCCCCHHHHHHHHHHHHH
Confidence 889999999999999999888764
##### No 212 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6FUF_B Rhodopsin, Guanine nucleotide-binding protein G(o); GPCR Complex Rhodopsin, SIGNALING PROTEIN; HET: RET, NAG; 3.117A {Bos taurus}
Probab=99.67 E-value=1.8e-20 Score=128.80 Aligned_cols=179 Identities=15% Similarity=0.174 Sum_probs=104.7 Template_Neff=12.100
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
....++++++|++++|||+|++++..........+..... .............+.+||++|.+.+...+..++..++++
T Consensus 13 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 92 (214)
T 6FUF_B 13 AAKDVKLLLLGADNSGKSTIVKQMKIIHEDGFSGRTRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAI 92 (214)
T ss_dssp ---CEEEEEESCTTSSHHHHTTCC------------------CEEECCEETTEEEEEEECCCSSTTTTTTGGGCCSCCEE
T ss_pred hcceeeEEEEcCCCCChHHHHHHHHHHcCCCccceeeecccceEEEEEEECCEEEEEEecCCCccchHHHHHHccCCCEE
Confidence 4567899999999999999999997644322111110000 111112223356889999999888777777788899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEP---VKPEEGRDMAN------- 152 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~------- 152 (184)
++|+|+.+..++......+........ ...|+++|+||.|+................. ........+..
T Consensus 93 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (214)
T 6FUF_B 93 IFCVDLSDYNRMHESLMDFDSICNNKFFIDTSIILFLNKKDLFGEKIKKSPLTICFPEYTGPNTYEDAAAYIQAQFESKN 172 (214)
T ss_dssp EEEEETTCSTTHHHHHHHHHHHHTCTTSSSSCEEEEEECHHHHHHHHHHSCGGGTCTTCCSCCCHHHHHHHHHHHHHHTC
T ss_pred EEEeehHHhhhHHHHHHHHHHHHcChhhcCCeEEEEEeChhHhhHHhccCChhhcCCCCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999987666655445554443321 2688999999999987432100000000000 00000000000
Q sequence1 153 --RIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 153 --~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
......++.+|++++.++.+++..+.+.+.+
T Consensus 173 ~~~~~~~~~~~~S~~~~~~i~~l~~~i~~~~~~ 205 (214)
T 6FUF_B 173 RSPNKEIYCHMTCATDTNNAQVIFDAVTDIIIA 205 (214)
T ss_dssp CCTTCCEEEEECCTTSSCCHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEEeeCChhHHHHHHHHHHHHHHH
Confidence 0113568999999999999999998887654
##### No 213 #####
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>1Z06_A Ras-related protein Rab-33B; Rab GTPase, Rab33b GTPase, vesicular; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8
Probab=99.67 E-value=1.9e-20 Score=126.24 Aligned_cols=167 Identities=25% Similarity=0.471 Sum_probs=104.4 Template_Neff=12.200
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYD-RLRPLSYPDTD 81 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~ 81 (184)
...+.++|+++|.+++|||+|++++..........+...... ............+.+||++|.+.+. ..+..+...+|
T Consensus 16 ~~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~d 95 (189)
T 1Z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCCcceEEEEEEEEeCCeEEEEEEEeCCCCHHHHHHHHHHHhccCC
Confidence 456778999999999999999999987654332222111111 1122233345678999999987664 55666778899
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
++++|+|..+..++......+....... ....|+++++||.|+........ .....++...+ ..++
T Consensus 96 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~k~d~~~~~~~~~------------~~~~~~~~~~~-~~~~ 162 (189)
T 1Z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPT------------DLAQKFADTHS-MPLF 162 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCH------------HHHHHHHHHTT-CCEE
T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCCCccCCCH------------HHHHHHHHHcC-CCEE
Confidence 9999999988766555543333332221 23678999999999876422110 11111222222 5788
Q sequence1 161 ECSAKT---KDGVREVFEMATRAALQ 183 (184)
Q Consensus 161 ~~s~~~---~~~i~~~~~~~~~~~~~ 183 (184)
++|+++ +.++.+++.++...+.+
T Consensus 163 ~~s~~~~~~~~~v~~~~~~l~~~~~~ 188 (189)
T 1Z06_A 163 ETSAKNPNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp ECCSSSGGGGSCHHHHHHHHC-----
T ss_pred EEeecCCCCCcCHHHHHHHHHHHHHc
Confidence 999999 78999999998887754
##### No 214 #####
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>3CPH_A Rab GDP-dissociation inhibitor, Ras-related protein; Rab GTPase, prenylation, vesicular transport; HET: GDP; 2.9A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.67 E-value=1.9e-20 Score=128.68 Aligned_cols=165 Identities=27% Similarity=0.538 Sum_probs=108.0 Template_Neff=12.000
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
....++|+++|..++|||+|++++..........++.... ....+........+.+||++|...+...+..++..+|++
T Consensus 17 ~~~~~~i~~~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~i 96 (213)
T 3CPH_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred ccccEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCCcceEEEEEEECCEEEEEEEEeCCCChHhHHhHHHHHccCCEE
Confidence 4667899999999999999999998665433222211111 111222233446789999999877777777778889999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|+|.....++......+...........|+++|+||.|........ .....++...+ ..++.+|
T Consensus 97 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~k~d~~~~~~~~-------------~~~~~~~~~~~-~~~~~~s 162 (213)
T 3CPH_A 97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTA-------------DQGEALAKELG-IPFIESS 162 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCH-------------HHHHHHHHHHT-CCEEECB
T ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCCCEEEEEeCcccCCCCCCH-------------HHHHHHHHHhC-CCEEEcc
Confidence 999999887666554333333333222457899999999986532111 11111222222 5688999
Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184)
+.++.++.++|.++...+.+
T Consensus 163 ~~~~~~i~~~~~~l~~~~~~ 182 (213)
T 3CPH_A 163 AKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp TTTTBSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999998877643
##### No 215 #####
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>1R4A_B ADP-ribosylation factor-like protein 1/Golgi autoantigen; Ras-like G Protein structure, Three-helix; HET: GNP; 2.3A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.66 E-value=2.2e-20 Score=123.44 Aligned_cols=161 Identities=17% Similarity=0.227 Sum_probs=105.2 Template_Neff=12.000
Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 87 (184)
Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (184)
.++|+++|+.++|||+|++++......... ++.... . .........+.+||++|...+...+..+...++++++++
T Consensus 2 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~-~~~~~~-~--~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 77 (165)
T 1R4A_B 2 EMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFN-V--ETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVV 77 (165)
T ss_dssp CEEEEEEECTTSCHHHHHHHSSSCCCCCCC-CCSSEE-E--EEECSSSCCEEEEEECCSTTTGGGGGGGCTTCCEEEEEE
T ss_pred CeeEEEEcCCCCCHHHHHHHhccCCCcCCC-CccceE-E--EEEEECCeEEEEEECCCCcccHHHHHHHccCCCEEEEEE
Confidence 579999999999999999999765443211 111111 1 111224568899999998877777777788899999999
Q sequence1 88 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 166 (184)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 166 (184)
|+.++.++......+...+... ....|+++++||+|+............. . . .......+.++.+|+++
T Consensus 78 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~-------~--~-~~~~~~~~~~~~~s~~~ 147 (165)
T 1R4A_B 78 DSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANAL-------G--L-PALKDRKWQIFKTSATK 147 (165)
T ss_dssp ETTCGGGHHHHHHHHHHHHHCGGGTTCEEEEEEECTTSTTCCCHHHHHHHH-------T--G-GGCCSCCEEEEEEBTTT
T ss_pred eCCChHhHHHHHHHHHHHHhcHhhhcCEEEEEEeCCCCCCCCCHHHHHHHh-------C--C-HHhcCCCeEEEECCCCC
Confidence 9988765554433344333221 2357889999999997643211100000 0 0 00011235688999999
Q sequence1 167 KDGVREVFEMATRAAL 182 (184)
Q Consensus 167 ~~~i~~~~~~~~~~~~ 182 (184)
+.|+.+++.++...+.
T Consensus 148 ~~~i~~~~~~i~~~i~ 163 (165)
T 1R4A_B 148 GTGLDEAMEWLVETLK 163 (165)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9999999999887654
##### No 216 #####
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>4BAS_A ADP-RIBOSYLATION FACTOR, PUTATIVE (SMALL GTPASE; HYDROLASE; HET: SO4, GNP; 2.0A {TRYPANOSOMA BRUCEI TREU927}
Probab=99.66 E-value=2.5e-20 Score=126.70 Aligned_cols=169 Identities=16% Similarity=0.203 Sum_probs=107.2 Template_Neff=12.100
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
......+|+++|.+++|||+|++++............... ............+.+||++|++.....+..++..+|++
T Consensus 13 ~~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 90 (199)
T 4BAS_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG--YNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS--EEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred CCCCcEEEEEECCCCCChhHHHhhhcccCCCCCCCcceee--eEEEEEeeCCEEEEEEEcCCChhhHHHHHHHhhcCCEE
Confidence 3466789999999999999999999876544322111111 11112223456789999999888877888888899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFC--------PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIG 155 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
++|+|+++..++......+........ ...|+++++||.|+........... .......... .
T Consensus 91 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~~k~D~~~~~~~~~~~~--------~~~~~~~~~~-~ 161 (199)
T 4BAS_A 91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVE--------ILDLTTLMGD-H 161 (199)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHH--------HHTHHHHHTT-S
T ss_pred EEEEECCCchhHHHHHHHHHHHHhccchhhcCCCCCCCcEEEEEEchhhCCCCCHHHHHH--------HcchhhhhcC-C
Confidence 999999886555554333333322211 1578999999999876422111000 0000111111 1
Q sequence1 156 AFGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 156 ~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
...++.+|++++.++.++++++.+.+.+
T Consensus 162 ~~~~~~~s~~~~~~i~~~~~~l~~~~~~ 189 (199)
T 4BAS_A 162 PFVIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred CeEEEEeeeCCCCChHHHHHHHHHHHHH
Confidence 2578899999999999999998887654
##### No 217 #####
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>3CLV_A Rab5 protein, putative; malaria, gtpase, Rab, structural genomics; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.66 E-value=2.6e-20 Score=127.87 Aligned_cols=165 Identities=24% Similarity=0.368 Sum_probs=107.4 Template_Neff=11.700
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA----------------------------------- 47 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~----------------------------------- 47 (184)
|++.+..+|+++|++++|||||++++..........+........
T Consensus 2 ~~~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3CLV_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CcccceEEEEEECCCCCCHHHHHHHHhCCCCCCCCccccceeeEEEEEEcchhcccccCcccccccccccccccceeeec
Confidence 566778999999999999999999988654432211111000000
Q sequence1 48 ---DIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 124 (184)
Q Consensus 48 ---~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~ 124 (184)
..........+.+||+||++.+...+..++..+|++++++|+.+..++......+..... ....|+++++||.|+
T Consensus 82 ~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~K~D~ 159 (208)
T 3CLV_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKI--SSNYIIILVANKIDK 159 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH--HSCCEEEEEEECTTC
T ss_pred ccccccCCceeEEEEEEeCCCcchhhceehheeCCCCEEEEEEeCCChhhHHHHHHHHHHhhc--cCCCEEEEEEECccc
Confidence 000011245788999999988888888888899999999999876555554333333222 135789999999998
Q sequence1 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
........ .....+... ...++.+|+.++.++.+++.++...+.+
T Consensus 160 ~~~~~~~~-------------~~~~~~~~~-~~~~~~~S~~~~~~~~~~~~~l~~~~~~ 204 (208)
T 3CLV_A 160 NKFQVDIL-------------EVQKYAQDN-NLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp C-CCSCHH-------------HHHHHHHHT-TCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred cCcccCHH-------------HHHHHHHHC-CCEEEEeEcccCCCHHHHHHHHHHHHHH
Confidence 65321110 011111222 2568899999999999999998877653
##### No 218 #####
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>4DKX_A Ras-related protein Rab-6A; GTP binding fold, Membrane trafficking; HET: GDP; 1.9A {Homo sapiens}
Probab=99.66 E-value=3e-20 Score=128.25 Aligned_cols=166 Identities=28% Similarity=0.420 Sum_probs=104.8 Template_Neff=11.700
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
......+|+++|.+++|||+|++++..........++.... .............+.+||++|...+...+..++..+|+
T Consensus 9 ~~~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 88 (216)
T 4DKX_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCcccEEEEEECCCCCCHHHHHHHHhhccCCcccCcccceeeEEEEEEECCEEEEEEEEeCCCcHHHHhhhHHHhcCCCE
Confidence 34667899999999999999999988765433222221111 11122223345678999999988777777778889999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++|+++++...+......+...........|+++++||.|+....... .......+...+ ..++.+
T Consensus 89 vi~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~i~lv~nk~D~~~~~~~~------------~~~~~~~~~~~~-~~~~~~ 155 (216)
T 4DKX_A 89 AVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVS------------IEEGERKAKELN-VMFIET 155 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSC------------HHHHHHHHHHHT-CEEEEE
T ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHCCCCCEEEEEeeCCcccCCCccC------------HHHHHHHHHHhC-CcEEEE
Confidence 9999999886655554333333332223467899999999987532110 000111122222 568899
Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184)
|+.++.++.+++.++.+.+.
T Consensus 156 s~~~~~~v~~l~~~l~~~l~ 175 (216)
T 4DKX_A 156 SAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp BTTTTBSHHHHHHHHHHHC-
T ss_pred eCCCCCCHHHHHHHHHHHhc
Confidence 99999999999988877653
##### No 219 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2QTV_B Protein transport protein SEC23, Small; COPII coat, vesicular transport, Cytoplasmic; HET: GNP; 2.5A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.65 E-value=3.1e-20 Score=122.87 Aligned_cols=164 Identities=19% Similarity=0.287 Sum_probs=101.5 Template_Neff=12.100
Q sequence1 9 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFS 88 (184)
Q Consensus 9 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (184)
++|+++|++++|||+|++++............ ..... ........+.+||++|.+.+...+..++..+|++++|+|
T Consensus 2 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 77 (167)
T 2QTV_B 2 GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTW--HPTSE--ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD 77 (167)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCCCCCCCC--SCEEE--EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCccCCCC--Cccee--EEeeCcEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEe
Confidence 68999999999999999999876543211110 00000 111234568899999988777777788889999999999
Q sequence1 89 IDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 167 (184)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 167 (184)
+.+...+......+....... ....|+++++||.|+....... ...+..... ........... ....++.+|++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~s~~~~ 154 (167)
T 2QTV_B 78 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEA-ELRSALGLL-NTTGSQRIEGQ-RPVEVFMCSVVMR 154 (167)
T ss_dssp TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHH-HHHHHHTCS-SCCC---CCSS-CCEEEEEEBTTTT
T ss_pred CCChhhHHHHHHHHHHHHHHhcccCCCEEEEEeCCCCCCCCCHH-HHHHHHHHH-hhhCccccccC-CCeeEEEEecCCC
Confidence 988665554433333332221 1368999999999986532211 111100000 00000001111 2267889999999
Q sequence1 168 DGVREVFEMATR 179 (184)
Q Consensus 168 ~~i~~~~~~~~~ 179 (184)
.|+.++++++.+
T Consensus 155 ~~i~~~~~~l~~ 166 (167)
T 2QTV_B 155 NGYLEAFQWLSQ 166 (167)
T ss_dssp BSHHHHHHHHTT
T ss_pred cCHHHHHHHHhh
Confidence 999999988764
##### No 220 #####
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>6GNI_B Protein transport protein SEC23, Protein; COPII coat, membrane trafficking, protein; HET: GNP; 4.9A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
Probab=99.65 E-value=3.3e-20 Score=122.89 Aligned_cols=164 Identities=18% Similarity=0.278 Sum_probs=101.8 Template_Neff=12.000
Q sequence1 9 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFS 88 (184)
Q Consensus 9 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (184)
++|+++|++++|||+|++++............ ..... ........+.+||++|...+...+..++..+|++++|+|
T Consensus 2 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 77 (167)
T 6GNI_B 2 GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTW--HPTSE--ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD 77 (167)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCCCCCCCC--SCEEE--EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHhcCcccCCCCCC--CCcee--EEEeCCEEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEE
Confidence 68999999999999999999876543211110 00000 111234578899999988777778888889999999999
Q sequence1 89 IDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 167 (184)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 167 (184)
+.+...+......+....... ....|+++++||.|+............... . ........... ....++.+|++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nk~D~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~-~~~~~~~~s~~~~ 154 (167)
T 6GNI_B 78 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGL-L-NTTGSQRIEGQ-RPVEVFMCSVVMR 154 (167)
T ss_dssp TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTC-S-SCCC---CCSS-CCEEEEEEBTTTT
T ss_pred CCChHhHHHHHHHHHHHhcChhhcCCCEEEEEeCCCCCCCCCHHHHHHHHcH-h-hccCCCCCCCC-ceEEEEEeeCccc
Confidence 988665554433333332221 136899999999998753221111110000 0 00000001111 2257889999999
Q sequence1 168 DGVREVFEMATR 179 (184)
Q Consensus 168 ~~i~~~~~~~~~ 179 (184)
.|+.++++++.+
T Consensus 155 ~~i~~~~~~l~~ 166 (167)
T 6GNI_B 155 NGYLEAFQWLSQ 166 (167)
T ss_dssp BSHHHHHHHHTT
T ss_pred ccHHHHHHHHhc
Confidence 999999998764
##### No 221 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1UPT_E ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 1, GOLGI; HYDROLASE/PROTEIN-BINDING, COMPLEX (GTPASE-GOLGIN), GOLGIN-245, GRIP; HET: GTP, MSE; 1.7A {HOMO SAPIENS} SCOP: c.37.1.8
Probab=99.65 E-value=4.1e-20 Score=123.14 Aligned_cols=165 Identities=18% Similarity=0.236 Sum_probs=108.0 Template_Neff=11.700
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
.....++|+++|+.++|||||++++......... ++.... .. ........+.+||++|.......+..++..++++
T Consensus 3 ~~~~~~~i~~~G~~~~GKstl~~~l~~~~~~~~~-~~~~~~-~~--~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~i 78 (171)
T 1UPT_E 3 HMTREMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFN-VE--TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAV 78 (171)
T ss_dssp CTTSCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSEE-EE--EEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEE
T ss_pred CCCcceEEEEEcCCCCChHHHHHHhhcCCCCCCC-CccceE-EE--EEEECCEEEEEEEcCCCcchHHHHHHHcccCCEE
Confidence 3466789999999999999999999865443221 111111 11 1222346788999999887777777788899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
++|+|+.+..++......+...+... ....|+++++||.|+............ ...... ....+.++.+
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nk~D~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~ 148 (171)
T 1UPT_E 79 IYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANS---------LGLPAL-KDRKWQIFKT 148 (171)
T ss_dssp EEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHH---------TTGGGC-CSCCEEEEEC
T ss_pred EEEEECCChHHHHHHHHHHHHHHhCHHhhCCEEEEEEeCcccCCCCCHHHHHHH---------cCChhh-CCCCeEEEEC
Confidence 99999988766554444444433221 235789999999999874321110000 000000 1122568899
Q sequence1 163 SAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~ 182 (184)
|+.++.|+.+++.++.+.+.
T Consensus 149 s~~~~~~i~~~~~~l~~~~~ 168 (171)
T 1UPT_E 149 SATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 99999999999998887653
##### No 222 #####
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>6SUR_E Ras-related protein Rab-33B, Autophagy-related protein; Autophagy, cell cycle; HET: GTP; 3.467A {Mus musculus}
Probab=99.65 E-value=4.1e-20 Score=122.88 Aligned_cols=165 Identities=26% Similarity=0.490 Sum_probs=105.2 Template_Neff=12.200
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYD-RLRPLSYPDTDVI 83 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~ 83 (184)
....+|+++|.+++|||+|++++..........+.....+ .......+....+.+||++|.+.+. ..+..+...+|++
T Consensus 2 ~~~~~i~~~G~~~~GKs~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~d~~ 81 (173)
T 6SUR_E 2 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGLERFRKSMVQHYYRNVHAV 81 (173)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSSCCSCCCCCCSCEEEEEEEEETTEEEEEEEEECCCSGGGTTTTHHHHTSSCCEE
T ss_pred CceEEEEEECCCCCChHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCChHHHHHhHhHHHhccCCEE
Confidence 3568999999999999999999887654332222111111 1122233445678999999987654 4566667789999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
++|+|+++..++......+....... ....|+++++||.|+....... ......++... ...++++
T Consensus 82 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~k~D~~~~~~~~------------~~~~~~~~~~~-~~~~~~~ 148 (173)
T 6SUR_E 82 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVP------------TDLAQKFADTH-SMPLFET 148 (173)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCTTTCCEEEEEECTTCTTTCCSC------------HHHHHHHHHHT-TCCEEEC
T ss_pred EEEEeCCChhHhhhHHHHHHHHHHHchhcCCCEEEEEeccccccccCCC------------HHHHHHHHHHc-CCCEEEe
Confidence 99999988665554433222222211 2367899999999997642210 01111122222 2578889
Q sequence1 163 SAKT---KDGVREVFEMATRAALQ 183 (184)
Q Consensus 163 s~~~---~~~i~~~~~~~~~~~~~ 183 (184)
|+.+ ++++.++|.++.+.+..
T Consensus 149 s~~~~~~~~~~~~~~~~l~~~i~~ 172 (173)
T 6SUR_E 149 SAKNPNDNDHVEAIFMTLAHKLKS 172 (173)
T ss_dssp CSSSCCSSCCHHHHHHHHHHHHHC
T ss_pred ecCCCCCcccHHHHHHHHHHHHhc
Confidence 9988 78899999988876643
##### No 223 #####
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>6A8D_A Gamma glutamyl transpeptidase (E.C.2.3.2.2); Chlamydomonas reinhardtii, ARF, ADP-ribosylation factor; HET: GDP; 2.34A {Chlamydomonas reinhardtii}
Probab=99.65 E-value=4.2e-20 Score=125.30 Aligned_cols=165 Identities=19% Similarity=0.261 Sum_probs=110.1 Template_Neff=11.700
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
....++|+++|+.++|||||++++........ .++.... . .........+.+||++|.+.+...+..+...+|+++
T Consensus 20 ~~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~-~~~~~~~-~--~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 95 (192)
T 6A8D_A 20 GNREMRVVMLGLDAAGKTTILYKLHIGEVLTT-VPTIGFN-V--EKVQYKNVVFTVWDVGGQEKLRPLWRHYFNNTDGLI 95 (192)
T ss_dssp TTCCEEEEEEESTTSSHHHHHHHHCCSCCEEE-CCSSSCC-E--EEEEETTEEEEEEECSCSTTCHHHHHGGGTTCCEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhCCCCCCC-CCcceEE-E--EEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45678999999999999999999886544321 1111111 1 112233457899999998888777888888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
+|+|+.+..++......+....... ....|+++++||.|+........ .. .......+... .+.++.+|
T Consensus 96 lv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iilv~~K~D~~~~~~~~~-~~--------~~~~~~~~~~~-~~~~~~~s 165 (192)
T 6A8D_A 96 FVVDSQDRDRIGKAAQEFQAILQDPLMLHSAILVFANKQDMKGCLTPAE-VC--------TALGLSDMRTR-KWHVQSSV 165 (192)
T ss_dssp EEEESSCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHH-HH--------HHHTCTTCCSC-CEEEEECB
T ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCEEEEEEhhHcCChhhhhh-hc--------HHHHHHHHHHc-CCCEEEEe
Confidence 9999998776666554444443321 13688999999999876321111 00 01111111122 25688999
Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184)
+.+++++.+++.++.+.+.+
T Consensus 166 ~~~~~~i~~~~~~l~~~~~~ 185 (192)
T 6A8D_A 166 ATRGEGLYEGLDWLATTLKN 185 (192)
T ss_dssp GGGTBTHHHHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHHH
Confidence 99999999999988877653
##### No 224 #####
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>5G53_C ADENOSINE RECEPTOR A2A, ENGINEERED DOMAIN; SIGNALING PROTEIN, G PROTEIN COUPLED; HET: GDP, NEC, SOG; 3.4A {HOMO SAPIENS}
Probab=99.65 E-value=4.4e-20 Score=128.59 Aligned_cols=177 Identities=12% Similarity=0.127 Sum_probs=101.2 Template_Neff=11.600
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
.....+|+++|..++|||+|++++............+...... ........+.+||++|+..+...+..++..+++++
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~vi 90 (229)
T 5G53_C 13 YRATHRLLLLGADNSGKSTIVKQMRIYHGGSGGSGGTSGIFET--KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAII 90 (229)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHHC---------------CEE--EEEETTEEEEEEECCSSSSSHHHHHTSCCCCSEEE
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCCCCCCceeeEEE--EEEeCCEEEEEEEcCCChHHHHHHHHHcCCCCEEE
Confidence 4567899999999999999999998654432111111111111 12223467899999998877777777888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHT--RRELAKMKQEPVK----------------PE 145 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~--~~~~~~~~~~~~~----------------~~ 145 (184)
+|+|+++...+......+....... ....|+++++||.|+...... ............. ..
T Consensus 91 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (229)
T 5G53_C 91 FVVDSSDYNRLQEALNDFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVT 170 (229)
T ss_dssp EEEESSCTTHHHHHHHHHHHHHHCSTTTTCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCSSCCCCTTCCHHHH
T ss_pred EEeccccHHHHHHHHHHHHHHHhcchhhcCEEEEEeeChhHhHHHHHcCCchHHHhChhhccCCCCCCCCCCCCCCchHH
Confidence 9999998766665554444443322 136899999999999754321 1111100000000 00
Q sequence1 146 EGRDM-----A---N----RIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 146 ~~~~~-----~---~----~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
.+..+ . . ....+.++.+||+++.|+.++|..+.+.+.+
T Consensus 171 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 220 (229)
T 5G53_C 171 RAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENARRIFNDCRDIIQR 220 (229)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSSCEEEEECC---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCCcceeEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 00000 0 0 0013568889999999999999988876643
##### No 225 #####
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>2H18_A ADP-ribosylation factor-like protein 8A; GDP, GTPASE, MEMBRANE TRAFFICKING, Structural; HET: GDP; 1.902A {Homo sapiens}
Probab=99.65 E-value=4.4e-20 Score=125.67 Aligned_cols=164 Identities=20% Similarity=0.277 Sum_probs=107.8 Template_Neff=11.200
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
..+..+|+++|..++|||||++++..........++..... .........+.+||++|.+.+...+..+...+|+++
T Consensus 28 ~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 104 (193)
T 2H18_A 28 WKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM---RKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 104 (193)
T ss_dssp HTSCEEEEEEESTTSSHHHHHHHHTTTCCEEEEC-----CC---EEEEETTEEEEEEESSCCHHHHHHHHHHTTTCSEEE
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE---EEeeeCCEEEEEEEcCCChHhHhHHHHHhcCCcEEE
Confidence 45678999999999999999999987654433222221111 112233457889999998877777777788999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
+|+|+++..++......+....... ....|+++++||.|+............ ........ ....++++|
T Consensus 105 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~k~D~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~s 174 (193)
T 2H18_A 105 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEK---------MNLSAIQD-REICCYSIS 174 (193)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHH---------TTGGGCCS-SCEEEEECB
T ss_pred EEEeCCCHHHHHHHHHHHHHHhcCcccCCCcEEEEEeCCCCCCCCCHHHHHHH---------hChhhhcC-CCeEEEEEe
Confidence 9999998766665554454444322 236889999999998763211110000 00001111 125788999
Q sequence1 164 AKTKDGVREVFEMATRAA 181 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~ 181 (184)
+.++.++.++++++.+.+
T Consensus 175 ~~~~~~v~~l~~~l~~~~ 192 (193)
T 2H18_A 175 CKEKDNIDITLQWLIQHS 192 (193)
T ss_dssp TTTTBSHHHHHHHHHHTC
T ss_pred cCccccHHHHHHHHHHhc
Confidence 999999999999887653
##### No 226 #####
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>6VIK_B Rab-like protein 3; Immune system, small GTPase; HET: GSP; 1.7A {Mus musculus}
Probab=99.63 E-value=8.3e-20 Score=128.87 Aligned_cols=174 Identities=17% Similarity=0.171 Sum_probs=104.6 Template_Neff=10.400
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV--ADIEVDGKQVELALWDTAGLE----DYDRLRPLSY 77 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~ 77 (184)
...+..+|+++|.+|+|||||++++....+.....++....+. ......+....+.+||++|.. .+...+..+.
T Consensus 31 ~~~~~~~I~l~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~g~~~~~~~~~~~~~~~~ 110 (241)
T 6VIK_B 31 ASLDRVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVHDYKEGTPEEKTYYIELWDVGGSVGSASSVKSTRAVFY 110 (241)
T ss_dssp BCCCCCEEEEECCTTSSHHHHHHHHTTTCEEECSSCEEEEEEEEETTTSTTCEEEEEEEEECCC------CCCCCCGGGC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHhcCcCCCCCCCcccceEEEEEecCCCCceEEEEEEEcCCCcCcchhchhHHHHHH
Confidence 3466789999999999999999999877654332222211111 111112345678999999976 4555666777
Q sequence1 78 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-------------------CPNVPIILVGNKKDLRNDEHTRRELAKMK 138 (184)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~~~~vv~nK~D~~~~~~~~~~~~~~~ 138 (184)
..++++++|+|+.+..++......+....... ....|+++|+||.|+.............
T Consensus 111 ~~~d~~ilv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlv~~K~D~~~~~~~~~~~~~~- 189 (241)
T 6VIK_B 111 NSVNGIILVHDLTNKKSSQNLYRWSLEVLNRDAVPTGVLVTNGDYDREQFADNQIPLLVIGTKLDQIHETKRHEVLIRT- 189 (241)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHTC------------------------CCSCEEEEEECGGGSCHHHHHHHHHHH-
T ss_pred hhCCEEEEEEECCChHHHHHHHHHHHHHHhcCCCCCCeEeeCCCcchhhhccCCCcEEEEEeChHHcChhhHHHHHHHH-
Confidence 88999999999998776666554444443321 1468899999999987633211100000
Q sequence1 139 QEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
... .... ........+.++.+|+.++.++.+++.++.+.+
T Consensus 190 ~~~--~~~~-~~~~~~~~~~~~~~sa~~~~~~~~l~~~i~~~i 229 (241)
T 6VIK_B 190 AFL--AEDF-NAEEINLDCTNPRSSAAGSSNAVKLSRFFDKVI 229 (241)
T ss_dssp HHH--HHHT-TCEEEECCTTCGGGGCTTSHHHHHHHHHHHHHH
T ss_pred HHH--Hhhc-CchhccccccCCCccCCCChhHHHHHHHHHHHH
Confidence 000 0000 000011115677899999999999987665544
##### No 227 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4P0T_B CENP-M; Mitosis, Kinetochore, CCAN, G-protein, cell; 1.493A {Homo sapiens}
Probab=99.63 E-value=9.9e-20 Score=122.71 Aligned_cols=140 Identities=13% Similarity=0.081 Sum_probs=91.0 Template_Neff=10.000
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
..+..+|+++|.+++|||+|++++.... ....+.+.+||++|++.+. +...+|+++
T Consensus 17 ~~~~~ki~lvG~~~~GKstli~~l~~~~-------------------~~~~~~~~i~d~~g~~~~~-----~~~~~d~ii 72 (176)
T 4P0T_B 17 GLNTATILLVGTEDALLQQLADSMLKED-------------------CASELKVHLAKSLPLPSSV-----NRPRIDLIV 72 (176)
T ss_dssp ---CEEEEEECSCHHHHHHHHHHHHSSC-------------------CSSCEEEEEESSSCCC-----------CCSEEE
T ss_pred CCCceeEEEECCCCcchHHHHHHHcccc-------------------CCCeEEEEEEcCCCCCccC-----CCCCCeEEE
Confidence 4557899999999999999999987543 1123467789999987554 556889999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
+++|+++..++......+....... ...|+++++||+|+...... .......++.... +.++.+|+
T Consensus 73 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~ilv~nk~D~~~~~~~------------~~~~~~~~~~~~~-~~~~~~s~ 138 (176)
T 4P0T_B 73 FVVNLHSKYSLQNTEESLRHVDASF-FLGKVCFLATGAGRESHCSI------------HRHTVVKLAHTYQ-SPLLYCDL 138 (176)
T ss_dssp EEEETTCHHHHHHHHHHHTTSCGGG-GTTSEEEEEESTTSTTSCHH------------HHHHHHHHHHHTT-CCEEECCT
T ss_pred EEEECCCcchHHHHHHHHhhccHHh-ccCcEEEEEeCCCcccceec------------CHHHHHHHHHHcC-CCEEEEeC
Confidence 9999998777665533333222211 12489999999998753211 0111111222222 57889999
Q sequence1 165 KTKDGVREVFEMATRAAL 182 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~ 182 (184)
.++.++.++++++.+.+.
T Consensus 139 ~~~~~v~~~~~~l~~~~~ 156 (176)
T 4P0T_B 139 EVEGFRATMAQRLVRVLQ 156 (176)
T ss_dssp TSHHHHHHHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHH
Confidence 999999999998877654
##### No 228 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4WAU_B Centromere protein M; native-SAD, S-SAD, sulfur-SAD, sulfur SAD; 2.2A {Homo sapiens}
Probab=99.63 E-value=9.9e-20 Score=122.71 Aligned_cols=140 Identities=13% Similarity=0.081 Sum_probs=92.3 Template_Neff=10.000
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
..+..+|+++|.+++|||+|++++.... ....+.+.+||++|++.+. +...+|+++
T Consensus 17 ~~~~~ki~lvG~~~~GKstli~~l~~~~-------------------~~~~~~~~i~d~~g~~~~~-----~~~~~d~ii 72 (176)
T 4WAU_B 17 GLNTATILLVGTEDALLQQLADSMLKED-------------------CASELKVHLAKSLPLPSSV-----NRPRIDLIV 72 (176)
T ss_dssp ---CEEEEEECSCHHHHHHHHHHHHHSC-------------------CSSCEEEEEESSSSCC---------CCCCSEEE
T ss_pred CCCceeEEEECCCCcchHHHHHHHcccc-------------------CCCeEEEEEEcCCCCCccC-----CCCCCeEEE
Confidence 4557899999999999999999987543 1123467789999987554 556889999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
+++|+++..++......+....... ...|+++++||+|+...... .......++.... +.++.+|+
T Consensus 73 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~ilv~nk~D~~~~~~~------------~~~~~~~~~~~~~-~~~~~~s~ 138 (176)
T 4WAU_B 73 FVVNLHSKYSLQNTEESLRHVDASF-FLGKVCFLATGAGRESHCSI------------HRHTVVKLAHTYQ-SPLLYCDL 138 (176)
T ss_dssp EEEETTCHHHHHHHHHHGGGSCGGG-GTTSEEEEEESTTSTTSCHH------------HHHHHHHHHHHTT-CCEEECCT
T ss_pred EEEECCCcchHHHHHHHHhhccHHh-ccCcEEEEEeCCCcccceec------------CHHHHHHHHHHcC-CCEEEEeC
Confidence 9999998777665533333222211 12489999999998753211 0111111222222 57889999
Q sequence1 165 KTKDGVREVFEMATRAAL 182 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~ 182 (184)
.++.++.++++++.+.+.
T Consensus 139 ~~~~~v~~~~~~l~~~~~ 156 (176)
T 4WAU_B 139 EVEGFRATMAQRLVRVLQ 156 (176)
T ss_dssp TSHHHHHHHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHH
Confidence 999999999998877654
##### No 229 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6FAE_B IQ motif and SEC7 domain-containing; GTPase GEF, HYDROLASE; HET: EDO; 2.35A {Homo sapiens}
Probab=99.62 E-value=1.1e-19 Score=125.07 Aligned_cols=165 Identities=17% Similarity=0.234 Sum_probs=103.5 Template_Neff=11.800
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
....++|+++|..++|||+|++++....+... .++.... ..........+.+||++|++.+...+..++..+|+++
T Consensus 46 ~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~-~~t~~~~---~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 121 (213)
T 6FAE_B 46 YFQSMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 121 (213)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHTTC------C-CCCSEEC---EEEEECSSEEEEEEECCCCTTTGGGGHHHHTTCCEEE
T ss_pred cccCeEEEEECCCCCCHHHHHHHHhcCCCCCc-CCcccEE---EEEEEEcCEEEEEEEcCCChhhHHHHHHHhccCCEEE
Confidence 45678999999999999999999987654322 1111111 1112223467889999998887777777888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
+|++..+..++......+...+... ....|+++++||.|+........... .....+.... .+.++++|
T Consensus 122 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nk~D~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~s 191 (213)
T 6FAE_B 122 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITD---------KLGLHSLRHR-NWYIQATC 191 (213)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECC---CCCCHHHHHH---------HTTGGGCTTC-CEEEEEEB
T ss_pred EEEECCChhhHHHHHHHHHHHHhChhhcCCeEEEEEeCCCccccCCHHHHHH---------HhChhhhccC-CeEEEEee
Confidence 9999988766666544454444322 23588999999999875422111100 0011111111 25688999
Q sequence1 164 AKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~ 183 (184)
+.++.++.++|.++.+.+.+
T Consensus 192 ~~~~~~~~~~~~~l~~~~~~ 211 (213)
T 6FAE_B 192 ATSGDGLYEGLDWLSNQLRN 211 (213)
T ss_dssp GGGTBTHHHHHHHHHHHC--
T ss_pred ccCCCCHHHHHHHHHHHHHc
Confidence 99999999999999887754
##### No 230 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4WAU_A Centromere protein M; native-SAD, S-SAD, sulfur-SAD, sulfur SAD; 2.2A {Homo sapiens}
Probab=99.62 E-value=1.1e-19 Score=122.44 Aligned_cols=140 Identities=13% Similarity=0.081 Sum_probs=93.5 Template_Neff=10.100
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
.....+|+++|.+++|||+|++++.... ....+.+.+||++|++.+. +...+|+++
T Consensus 17 ~~~~~ki~lvG~~~~GKstli~~l~~~~-------------------~~~~~~~~i~d~~g~~~~~-----~~~~~d~ii 72 (176)
T 4WAU_A 17 GLNTATILLVGTEDALLQQLADSMLKED-------------------CASELKVHLAKSLPLPSSV-----NRPRIDLIV 72 (176)
T ss_dssp ---CEEEEEECSCHHHHHHHHHHHHSSC-------------------CSSCEEEEEESSSSCCS-C-----CCSCCSEEE
T ss_pred CCCceeEEEECCCCcchHHHHHHHcccc-------------------CCCeEEEEEEcCCCCCccC-----CCCCCeEEE
Confidence 4557899999999999999999987543 1123467789999987554 556889999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
+++|+++..++......+....... ...|+++++||+|+...... .......++.... ..++.+|+
T Consensus 73 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~ilv~nk~D~~~~~~~------------~~~~~~~~~~~~~-~~~~~~sa 138 (176)
T 4WAU_A 73 FVVNLHSKYSLQNTEESLRHVDASF-FLGKVCFLATGAGRESHCSI------------HRHTVVKLAHTYQ-SPLLYCDL 138 (176)
T ss_dssp EEEETTCHHHHHHHHHHGGGSCGGG-GTTSEEEEEESTTSTTSCHH------------HHHHHHHHHHHTT-CCEEECCT
T ss_pred EEEECCCcchHHHHHHHHhhccHHh-ccCcEEEEEeCCCcccceec------------CHHHHHHHHHHcC-CCEEEEeC
Confidence 9999998777665533333222211 12489999999998753211 0011111222222 57888999
Q sequence1 165 KTKDGVREVFEMATRAAL 182 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~ 182 (184)
.++.++.++++++.+.+.
T Consensus 139 ~~~~~v~~~~~~l~~~i~ 156 (176)
T 4WAU_A 139 EVEGFRATMAQRLVRVLQ 156 (176)
T ss_dssp TSHHHHHHHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHH
Confidence 999999999998877654
##### No 231 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>5KSP_B Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GDP; 2.162A {Homo sapiens}
Probab=99.62 E-value=1.3e-19 Score=123.23 Aligned_cols=160 Identities=16% Similarity=0.167 Sum_probs=100.5 Template_Neff=11.100
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE---NYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
.....+|+++|.+++|||+|++++....+.......... .....+...+....+.+||++|+..+. .++..++
T Consensus 5 ~~~~~ki~l~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~----~~~~~~~ 80 (190)
T 5KSP_B 5 QRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESEFLT----EAEIICD 80 (190)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHTTCCTTTTC-------CCEEEEEEEETTEEEEEEEEEECCCSCCC----HHHHCCS
T ss_pred cCCeEEEEEECCCCCCHHHHHHHHcCCcccccccccCCCcceEEEEEEEECCEEEEEEEEeCCCchhhh----hHHhhCC
Confidence 456789999999999999999999876654322111100 001122233444567788888866433 2446789
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYM 160 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (184)
++++|+|+++..++......+...... ...|+++|+||.|+....... ......++...+. +.++
T Consensus 81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~ilv~~k~D~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 146 (190)
T 5KSP_B 81 VVCLVYDVSNPKSFEYCARIFKQHFMD--SRIPCLIVAAKSDLHEVKQEY------------SISPTDFCRKHKMPPPQA 146 (190)
T ss_dssp EEEEEEETTCTTSHHHHHHHCCCCCTT--SSCCEEEEEECTTSCCCCCSS------------SSCHHHHHHHTTCCCCEE
T ss_pred EEEEEEeCCChhHHHHHHHHHHHHccC--CCCCEEEEEecCCCccccccc------------cCCHHHHHHHCCCCCCee
Confidence 999999999877776664433333322 468999999999987532110 1111222222221 2247
Q sequence1 161 ECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
.+|+.++.++.++++++.+.+.
T Consensus 147 ~~s~~~~~~v~~~~~~l~~~~~ 168 (190)
T 5KSP_B 147 FTCNTADAPSKDIFVKLTTMAM 168 (190)
T ss_dssp CCSCCSSCCCCHHHHHHHHHHC
T ss_pred EeeCCCCCCHHHHHHHHHHHhh
Confidence 8999999999999998887664
##### No 232 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6LI3_A G-protein coupled receptor 52, Guanine; G-protein coupled receptor, orphan GPCR; 3.32A {Homo sapiens}
Probab=99.62 E-value=1.3e-19 Score=128.26 Aligned_cols=175 Identities=13% Similarity=0.131 Sum_probs=64.8 Template_Neff=10.900
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
...++|+++|.+++|||+|++++............+....... .......+.+||++|.......+...+..++++++
T Consensus 33 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~vi~ 110 (248)
T 6LI3_A 33 RATHRLLLLGADNSGKSTIVKQMRILHGGSGGSGGTSGIFETK--FQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIF 110 (248)
T ss_dssp HTCCEEEEECCSSSSCHHHHHHHHHHC-----------------------------------------------------
T ss_pred hhCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCcceeEEEE--EEECCEEEEEEECCCChhHHHHHHHHccCccEEEE
Confidence 5678999999999999999999875543221111111111111 11234578899999988777777777888999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHT--RRELAKMKQEPVK----------------PEE 146 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~--~~~~~~~~~~~~~----------------~~~ 146 (184)
|+|+++..++......+....... ....|+++++||.|+...... ...+......... ...
T Consensus 111 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (248)
T 6LI3_A 111 VVDSSDYNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTR 190 (248)
T ss_dssp ------------------CBSEECSSCEEESCCSGGTSSEEESCTHHHHHHTSSTCEEEHHHHHSCTTSTSCCSCSCSTH
T ss_pred EcCccchhhHHHHHHHHHHHHccccccCCEEEEEeeCcchhHHHHHcCCchHHHhChhhccCCCCCCCCCCCCCCccHHH
Confidence 999998776666554444443322 136789999999999764321 1111110000000 000
Q sequence1 147 GR-----DMAN-------RIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 147 ~~-----~~~~-------~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
.. .+.. ....+.++++||+++.++..+|..+.+.+.
T Consensus 191 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 238 (248)
T 6LI3_A 191 AKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENARRIFNDCRDIIQ 238 (248)
T ss_dssp HHHHHHHHHTTTHHHHCSSSCCEEEEECCSSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCcceEEEEEEeccCHHHHHHHHHHHHHHHH
Confidence 00 0000 001256788999999999999988877553
##### No 233 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1X3S_A Ras-related protein Rab-18; GTPase, Rab, GNP, Structural Genomics; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=1.4e-19 Score=123.42 Aligned_cols=165 Identities=30% Similarity=0.472 Sum_probs=107.2 Template_Neff=11.200
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
....++++++|.+++|||++++++..........+..... .............+.+||++|.+.+...+..++..++++
T Consensus 12 ~~~~~~i~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~ 91 (195)
T 1X3S_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred hcceEEEEEECCCCCCHHHHHHHHcCCCCCcccCceeEEEEEEEEEEECCeEEEEEEEeCCCChHHHhhcHHHcCCCCEE
Confidence 4557899999999999999999988765432221111111 111222233356789999999887777777788899999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
++|+++.+..++......+..+.... ....|+++++||.|........ ......+... ...++.+
T Consensus 92 i~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~~k~d~~~~~~~~-------------~~~~~~~~~~-~~~~~~~ 157 (195)
T 1X3S_A 92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDR-------------NEGLKFARKH-SMLFIEA 157 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCH-------------HHHHHHHHHT-TCEEEEC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeccccccCccCH-------------HHHHHHHHHc-CCeEEEe
Confidence 99999998766655433222222211 2357889999999975422110 0111111122 2468899
Q sequence1 163 SAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~~~ 183 (184)
|++++.++.++|.++...+++
T Consensus 158 sa~~~~~v~~~~~~i~~~~~~ 178 (195)
T 1X3S_A 158 SAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHHT
T ss_pred eCCCCCCHHHHHHHHHHHHHc
Confidence 999999999999988877654
##### No 234 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2H57_B Crystal structure of human ADP-ribosylation; GTP, GTPASE, MEMBRANE TRAFFICKING, STRUCTURAL; HET: GTP; 2.0A {Homo sapiens}
Probab=99.62 E-value=1.5e-19 Score=122.06 Aligned_cols=167 Identities=14% Similarity=0.187 Sum_probs=106.6 Template_Neff=12.100
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY-VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
......+|+++|..++|||+|++++......... .++.... . .........+.+||++|...+...+..++..+++
T Consensus 17 ~~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 93 (190)
T 2H57_B 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS-I--EKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHTSCTTTCCSSCCCCSSEE-E--EEEECSSCEEEEEEECCSGGGGGGGGGGTTTCSE
T ss_pred CCCceEEEEEEcCCCCCHHHHHHHHcccccCCCCCCCceeEe-E--EEEEcCCEEEEEEECCCChhhHHHHHHHhhcCCE
Confidence 3567789999999999999999999876542221 1111111 1 1122345678899999988777777778888999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 159 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
+++|+|.++..++......+........ ...|+++++||.|+............ . ...... .....+
T Consensus 94 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nk~D~~~~~~~~~~~~~-~--------~~~~~~-~~~~~~ 163 (190)
T 2H57_B 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQL-L--------CLENIK-DKPWHI 163 (190)
T ss_dssp EEEEEETTCSTTHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHH-T--------TGGGCC-SSCEEE
T ss_pred EEEEEECCChhhHHHHHHHHHHHHcCcchhcCCCCEEEEEECCCccCcCChHHHHHH-h--------cHhhcc-CCCeEE
Confidence 9999999886655554443333332211 26789999999998763221111000 0 000001 112568
Q sequence1 160 MECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 160 ~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
+.+|+.++.++.+++.++.+.+.+
T Consensus 164 ~~~s~~~~~~i~~~~~~l~~~~~~ 187 (190)
T 2H57_B 164 CASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHC-
T ss_pred EEccCCCCCCHHHHHHHHHHHHHh
Confidence 899999999999999998877643
##### No 235 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>7D7M_D Prostaglandin E2 receptor EP4 subtype,Prostaglandin; prostaglandin E receptor, EP4, GPCR; HET: P2E; 3.3A {Homo sapiens}
Probab=99.61 E-value=1.9e-19 Score=127.35 Aligned_cols=176 Identities=13% Similarity=0.121 Sum_probs=104.3 Template_Neff=11.100
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
.....+|+++|.+++|||+|++++..........+....... .........+.+||++|+..+...+..++..+++++
T Consensus 33 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~d~vi 110 (249)
T 7D7M_D 33 YRATHRLLLLGADNSGKSTIVKQMRIYHGGSGGSGGTSGIFE--TKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAII 110 (249)
T ss_dssp HHHSEEECCCCCTTSSTTTSSCC-------------CCSSEE--EEEESSSCEEEEEECCSSCSCCSTTTTTCCSCSBCC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHHcCCCCCCCCceeeEE--EEEEECCEEEEEEEcCCChHHHHHHHHHccCCcEEE
Confidence 356789999999999999999998765433211111111111 112223467889999998877777777788999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHT--RRELAKMKQEPVK----------------PE 145 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~--~~~~~~~~~~~~~----------------~~ 145 (184)
+|+|+++..++......+....... ....|+++++||+|+...... ...+......... ..
T Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (249)
T 7D7M_D 111 FVVDSSDYNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVT 190 (249)
T ss_dssp EEEESSCHHHHHHHHHHHHHHHHCSSSTTCBBCEEEECHHHHHHHHHHCSSCHHHHCTHHHHCCCCTTCCCCTTCCHHHH
T ss_pred EECCccchhHHHHHHHHHHHHHhccccccCeEEEEeeCcccchHHHHcCCchHHHhChhhccCCCCCCCCCCCCCCccHH
Confidence 9999998777766655555444322 136799999999999864321 1111110000000 00
Q sequence1 146 EGRDM-----A-------NRIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 146 ~~~~~-----~-------~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
....+ . .....+.++++||+++.|+..+|..+.+.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 239 (249)
T 7D7M_D 191 RAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENARRIFNDCRDIIQ 239 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCCBCCEECCSSCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCCCcceEEEEEeeccCHHHHHHHHHHHHHHHH
Confidence 00000 0 0001245788999999999999988877654
##### No 236 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6G79_A Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit; G-protein coupled receptor, 5-HT1B, Mini-Go; HET: EP5; 3.78A {Homo sapiens}
Probab=99.60 E-value=2.8e-19 Score=124.08 Aligned_cols=177 Identities=15% Similarity=0.158 Sum_probs=67.5 Template_Neff=11.800
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 84 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 84 (184)
..+..+++++|..++|||+|++++............... ............+.+||++|...+...+..++..+++++
T Consensus 27 ~~~~~~i~i~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 104 (225)
T 6G79_A 27 AAKDVKLLLLGADNSGKSTIVKQMKIIHGGSGGSGGTTG--IVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAII 104 (225)
T ss_dssp HHHSEEEEEEECTTSSHHHHHHHHC-------------------------------------------------------
T ss_pred cccCcEEEEEcCCCCCchHHHhhceeecCCCCcccccce--eEEEEEEEeCeEEEEEecCCCchhhHHHHHhhcCCcEEE
Confidence 356789999999999999999998765432111111111 111112223457889999998877777777888999999
Q sequence1 85 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEP---VKPEEGRDMANR------- 153 (184)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~------- 153 (184)
+|+|..+..++......+....... ....|+++++||.|+................. ........+...
T Consensus 105 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (225)
T 6G79_A 105 FCVDLSDYNRMHESLMLFDSICNNKFFIDTSIILFLNKKDLFGEKIKKSPLTICFPEYTGPNTYEDAAAYIQAQFESKNR 184 (225)
T ss_dssp --------------CCCCCSBEECSCCHHGGCSEEESCHHHHHHHTTGGEEEEHHHHHSTSC--CCHHHHHHHHHHHSCC
T ss_pred EEEehhhccchHHHHHHHHHHHcChhhcCCeEEEEEeChhHhhHHhccCCcchhccccCCCCCHHHHHHHHHHHHHHhcc
Confidence 9999998766666544444443322 12689999999999987432110000000000 000000001000
Q sequence1 154 --IGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 154 --~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
...+.++++|++++.++.++|.++.+.+++
T Consensus 185 ~~~~~~~~~~~S~~~~~~i~~l~~~i~~~~~~ 216 (225)
T 6G79_A 185 SPNKEIYCHMTCATDTNNAQVIFDAVTDIIIA 216 (225)
T ss_dssp CSSCCEEEECCCTTCSCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEEecChhhHHHHHHHHHHHHHH
Confidence 113568899999999999999998887754
##### No 237 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6S6D_C Ras-related GTP-binding protein A, Ras-related; small GTPases, mTORC1 activator, roadblock; HET: GTP, GDP, 9JE; 2.5A {Homo sapiens}
Probab=99.60 E-value=3.1e-19 Score=134.70 Aligned_cols=171 Identities=14% Similarity=0.221 Sum_probs=92.6 Template_Neff=8.800
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVD-GKQVELALWDTAGLEDYDRLR---PLSYPDT 80 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~---~~~~~~~ 80 (184)
....++|+++|..++|||||++++.+...+.................. ...+.+.+||+||+..+.... ..++..+
T Consensus 58 ~~~~~kIllvG~~~sGKSSli~~l~~~~~~~~t~~~~~t~~~~~~~~~~~~~~~l~iwD~pG~~~~~~~~~~~~~~~~~~ 137 (399)
T 6S6D_C 58 DSSKPRILLMGLRRSGKNSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGT 137 (399)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHSCCCSGGGGCC------------CCSSSEEEEC---------------CCTTTTC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCcccceecccccceEEeeecCCCcccEEEEECCCCcccCCCccCHHHHhccc
Confidence 456789999999999999999999843322111100000001111122 345689999999988776554 6778899
Q sequence1 81 DVILMCFSIDSP--DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR---IG 155 (184)
Q Consensus 81 ~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 155 (184)
+++++|+|+.+. ..+......+.. +....+..|+++++||+|+............... .....+... ..
T Consensus 138 d~lI~ViD~~~~~~~~~~~l~~~l~~-~~~~~~~~~vivv~nK~D~~~~~~~~~~~~~i~~-----~~~~~l~~~~~~~~ 211 (399)
T 6S6D_C 138 GALIYVIDAQDDYMEALTRLHITVSK-AYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQ-----RANDDLADAGLEKL 211 (399)
T ss_dssp SEEEEEEESSSCCHHHHHHHHHHHHH-HHHHCTTSEEEEEEECGGGSCHHHHHHHHHHHHH-----HHHHHHHHTTCTTC
T ss_pred CEEEEEEecCCchHHHHHHHHHHHHH-HHHHCCCCcEEEEEEecCCCChhhHHHHHHHHHH-----HHHHHHHHcCcccC
Confidence 999999999986 234444333322 2222357899999999999764221111111000 000111111 11
Q sequence1 156 AFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 156 ~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
.+.++.+|+. +.++.++|+++++.++
T Consensus 212 ~i~~~~tS~~-d~~i~eafs~ii~~l~ 237 (399)
T 6S6D_C 212 HLSFYLTSIY-DHSIFEAFSKVVQKLI 237 (399)
T ss_dssp CEEEEECCTT-SSHHHHHHHHHHHHTC
T ss_pred ceEEEEEecc-CccHHHHHHHHHHHHh
Confidence 2568889998 8899999988877654
##### No 238 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6S6A_C Ras-related GTP-binding protein A, Ras-related; small GTPases, mTORC1 activator, roadblock; HET: 9JE, GTP, GDP; 2.63A {Homo sapiens}
Probab=99.59 E-value=3.7e-19 Score=134.27 Aligned_cols=170 Identities=14% Similarity=0.217 Sum_probs=89.8 Template_Neff=8.800
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEV-DGKQVELALWDTAGLEDYDRLR---PLSYPD 79 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~---~~~~~~ 79 (184)
....++|+++|..++|||||++++.+.... ...+...... ...... ......+.+||+||++.+.... ..++..
T Consensus 58 ~~~~~kI~lvG~~~sGKSSli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~pG~~~~~~~~~~~~~~~~~ 136 (399)
T 6S6A_C 58 DSSKPRILLMGLRRSGKSSIQKVVFHKMSP-NENLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG 136 (399)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHC-----------------------CCSSSEEEEC---------------CCGGGS
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHhccCCc-ccccccccceeeEEeeccCCCceeeEEEEcCCCcccCCCccCHHHhhcc
Confidence 456789999999999999999999853222 1111111111 111111 1345688999999988776543 677889
Q sequence1 80 TDVILMCFSIDSP--DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR---I 154 (184)
Q Consensus 80 ~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 154 (184)
++++++|+|+.+. ..+......+.. .....+..|+++++||+|+............... .....++.. .
T Consensus 137 ~d~vI~ViD~~~~~~~~~~~l~~~l~~-~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~i~~-----~~~~~l~~~~~~~ 210 (399)
T 6S6A_C 137 TGALIYVIDAQDDYMEALTRLHITVSK-AYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQ-----RANDDLADAGLEK 210 (399)
T ss_dssp CSEEEEEEESSSCCHHHHHHHHHHHHH-HHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHH-----HHHHHHHTTTCTT
T ss_pred ccEEEEEEECCCChHHHHHHHHHHHHH-HHHHCCCCCEEEEEEeccCCCHHHHHHHHHHHHH-----HHHHHHHHhcccc
Confidence 9999999999986 223222222222 2222357899999999999864321111111000 001111111 1
Q sequence1 155 GAFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 155 ~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
....++.+|+. +.++.++|+++++.++
T Consensus 211 ~~~~~~~tS~~-~~~i~eafs~vi~~l~ 237 (399)
T 6S6A_C 211 LHLSFYLTSIY-DHSIFEAFSKVVQKLI 237 (399)
T ss_dssp SCEEEEECCTT-SSHHHHHHHHHHHTTC
T ss_pred CcceEEEEecC-CccHHHHHHHHHHHHh
Confidence 22568899999 8899999998887664
##### No 239 #####
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>6F1Y_j Cytoplasmic dynein 1 heavy chain; Cryo-EM, Complex, MOTOR PROTEIN; 3.4A {Homo sapiens}
Probab=99.59 E-value=4e-19 Score=131.42 Aligned_cols=172 Identities=13% Similarity=0.208 Sum_probs=103.9 Template_Neff=9.700
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEV--DGKQVELALWDTAGLEDYDRLRPLSYP---- 78 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~---- 78 (184)
.+..+|+++|.+++|||||+++|........ +....+ ...+.. .+....+.+||++|.+.+..++..++.
T Consensus 16 ~~~~~vlvlG~~~~GKssLi~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~l~~~~l~~~~~ 92 (337)
T 6F1Y_j 16 PSGKNILVFGEDGSGKTTLMTKLQGAEHGKK---GRGLEYLYLSVHDEDRDDHTRCNVWILDGDLYHKGLLKFAVSAESL 92 (337)
T ss_dssp CCCEEEEEECCSSTTHHHHHHHHC---CCCC---SSSCCCEEEEECCSSSCCCEEEEECEECSCSSTHHHHHTTCCTTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCccCCC---CCccceEEEEeecCCCCCcceEEEEEeCCChhhHhHHHHhcCcccc
Confidence 4468999999999999999999987643211 111111 111111 124568899999998877766766666
Q sequence1 79 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFC------------------------------------------------ 110 (184)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------------------------------------------ 110 (184)
.++++++|+|++++.++......|...+....
T Consensus 93 ~~~~viiv~D~~~~~~~~~~l~~wl~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (337)
T 6F1Y_j 93 PETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEKMRELERKFVKDFQDYMEPEEGCQGSPQRRGPLTSGSDEE 172 (337)
T ss_dssp SSEEEEECCCSSSHHHHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTSSSTTCC------------------
T ss_pred cCeEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCccccCCCCCccCCCCCCCCccc
Confidence 78999999999987764333344444332211
Q sequence1 111 --------------PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEM 176 (184)
Q Consensus 111 --------------~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 176 (184)
...|+++|+||+|+.............. ..........++...+ ..++.+|++++.|+..++.+
T Consensus 173 ~~~~~~~~~~~~~~~~~piivV~tK~D~~~~~~~~~~~~~~~-~~~i~~~lr~~~~~~g-~~l~~~S~~~~~~i~~l~~~ 250 (337)
T 6F1Y_j 173 NVALPLGDNVLTHNLGIPVLVVCTKCDAVSVLEKEHDYRDEH-LDFIQSHLRRFCLQYG-AALIYTSVKEEKNLDLLYKY 250 (337)
T ss_dssp -------CCCCCCSCCSSEEEECCCCTTHHHHHHHTCCSHHH-HHHHHHHHHHHHHHHT-CCEECCCTTCCTTHHHHHHH
T ss_pred ccccCCCCCeeeecCCCCEEEEEeCccHHHHHHhcCCCChHH-HHHHHHHHHHHHHHhC-cEEEEcCCCCcchHHHHHHH
Confidence 2689999999999976322110000000 0011111222333333 57889999999999999988
Q sequence1 177 ATRAAL 182 (184)
Q Consensus 177 ~~~~~~ 182 (184)
+.+.+.
T Consensus 251 l~~~~~ 256 (337)
T 6F1Y_j 251 IVHKTY 256 (337)
T ss_dssp HHC---
T ss_pred HHHHHh
Confidence 877654
##### No 240 #####
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>6VIJ_A Rab-like protein 3; Immune system, small GTPase; HET: GDP; 1.95A {Mus musculus}
Probab=99.59 E-value=5e-19 Score=125.26 Aligned_cols=167 Identities=17% Similarity=0.199 Sum_probs=103.7 Template_Neff=10.300
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIE-----VDGKQVELALWDTAGLE----DYDRLRP 74 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~-----~~~~~~~~~i~D~~g~~----~~~~~~~ 74 (184)
..+..+|+++|.+|+|||+|++++..........++..... ..... .......+.+||++|.. .+...+.
T Consensus 32 ~~~~~~i~lvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~ 111 (245)
T 6VIJ_A 32 SLDRVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVDIRVHDYKEGTPEEKTYYIELWDVGGSVGSASSVKSTRA 111 (245)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSEEEEEEEEEETTTSTTCEEEEEEEEECCCCTTCCHHHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCccCCCCCcccceeEEEEEEEecCCCCCCcceEEEEEEcCCCCCChhhhHHHHH
Confidence 45678999999999999999999987654332221111111 01111 11234678999999976 4445566
Q sequence1 75 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-------------------CPNVPIILVGNKKDLRNDEHTRRELA 135 (184)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~~~~vv~nK~D~~~~~~~~~~~~ 135 (184)
.++..++++++|+|+.+..++......+....... ....|+++|+||+|+...........
T Consensus 112 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vivv~~K~D~~~~~~~~~~~~ 191 (245)
T 6VIJ_A 112 VFYNSVNGIILVHDLTNKKSSQNLYRWSLEVLNRDAVPTGVLVTNGDYDREQFADNQIPLLVIGTKLDQIHETKRHEVLI 191 (245)
T ss_dssp GGGSSCCEEEEEEETTCHHHHHHHHHHHHHHTTC------------------CCSCCSCEEEEEECGGGSCGGGHHHHHH
T ss_pred HHHhcCCEEEEEEECCChHHHHhHHHHHHHHHhcCCCCCCeEeeCCCCChHHhccCCCcEEEEEeChHHccccchHHHHH
Confidence 66778999999999998766655544333333211 13678999999999876432111100
Q sequence1 136 KMKQEPVKPEEGRDMANRI------GAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
.....+... ..+.++++||+++.++.+++..+...+
T Consensus 192 ----------~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~i~~~i 233 (245)
T 6VIJ_A 192 ----------RTAFLAEDFNAEEINLDCTNPRSSAAGSSNAVKLSRFFDKVI 233 (245)
T ss_dssp ----------HHHHHHHHTTCEEEECCTTCGGGGCTTSHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHhhcCchhcCcccCCCCcCCCCCccHHHHHHHHHHHH
Confidence 011111111 125678899999999999887655544
##### No 241 #####
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>6VIJ_B Rab-like protein 3; Immune system, small GTPase; HET: GDP; 1.95A {Mus musculus}
Probab=99.59 E-value=5e-19 Score=125.26 Aligned_cols=167 Identities=17% Similarity=0.199 Sum_probs=102.0 Template_Neff=10.300
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIE-----VDGKQVELALWDTAGLE----DYDRLRP 74 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~-----~~~~~~~~~i~D~~g~~----~~~~~~~ 74 (184)
..+..+|+++|.+|+|||+|++++..........++..... ..... .......+.+||++|.. .+...+.
T Consensus 32 ~~~~~~i~lvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~ 111 (245)
T 6VIJ_B 32 SLDRVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVDIRVHDYKEGTPEEKTYYIELWDVGGSVGSASSVKSTRA 111 (245)
T ss_dssp ---CEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSEEEEEEEEEETTTSTTCEEEEEEEEECCCCTTSCHHHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCccCCCCCcccceeEEEEEEEecCCCCCCcceEEEEEEcCCCCCChhhhHHHHH
Confidence 45678999999999999999999987654332221111111 01111 11234678999999976 4445566
Q sequence1 75 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-------------------CPNVPIILVGNKKDLRNDEHTRRELA 135 (184)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~~~~vv~nK~D~~~~~~~~~~~~ 135 (184)
.++..++++++|+|+.+..++......+....... ....|+++|+||+|+...........
T Consensus 112 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vivv~~K~D~~~~~~~~~~~~ 191 (245)
T 6VIJ_B 112 VFYNSVNGIILVHDLTNKKSSQNLYRWSLEVLNRDAVPTGVLVTNGDYDREQFADNQIPLLVIGTKLDQIHETKRHEVLI 191 (245)
T ss_dssp GGGSSCCEEEEEEETTCHHHHHHHHHHHHHHHCC------------------CTTCCSCEEEEEECGGGSCHHHHHHHHH
T ss_pred HHHhcCCEEEEEEECCChHHHHhHHHHHHHHHhcCCCCCCeEeeCCCCChHHhccCCCcEEEEEeChHHccccchHHHHH
Confidence 66778999999999998766655544333333211 13678999999999876432111100
Q sequence1 136 KMKQEPVKPEEGRDMANRI------GAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
.....+... ..+.++++||+++.++.+++..+...+
T Consensus 192 ----------~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~i~~~i 233 (245)
T 6VIJ_B 192 ----------RTAFLAEDFNAEEINLDCTNPRSSAAGSSNAVKLSRFFDKVI 233 (245)
T ss_dssp ----------HHHHHHHHTTCEEEECCTTCGGGGCTTSHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHhhcCchhcCcccCCCCcCCCCCccHHHHHHHHHHHH
Confidence 011111111 125678899999999999887655544
##### No 242 #####
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>2GJ8_B tRNA modification GTPase trmE; G-domain dimer, alpha-beta-sandwich, Hydrolase; HET: MSE, ALF, GDP; 1.7A {Escherichia coli BL21(DE3)} SCOP: c.37.1.8
Probab=99.58 E-value=5.7e-19 Score=116.85 Aligned_cols=156 Identities=21% Similarity=0.238 Sum_probs=97.3 Template_Neff=12.600
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--------RPLSY 77 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 77 (184)
....+++++|..++|||||++++.............................+.+||++|....... .....
T Consensus 2 ~~~~~i~l~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2GJ8_B 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEESSSCEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccEecCCCCCceeeEEEEEeeCCEEEEEEECCCccCCChHHHHHHHHHHHHHH
Confidence 3467899999999999999999987654322111110000001111112346789999996644221 22345
Q sequence1 78 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
..++++++|+|..+..++... ..+...+.......|+++++||.|....... .+.. ...
T Consensus 82 ~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~k~d~~~~~~~-------------------~~~~-~~~ 140 (172)
T 2GJ8_B 82 EQADRVLFMVDGTTTDAVDPA-EIWPEFIARLPAKLPITVVRNKADITGETLG-------------------MSEV-NGH 140 (172)
T ss_dssp HHCSEEEEEEETTSCCCCSHH-HHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-------------------EEEE-TTE
T ss_pred hhCCEEEEEEeCCCCCCCCch-hhhHHHHHhCCCCCCEEEEEECcccCCCccc-------------------cccc-CCc
Confidence 678999999999876655443 2333333333356899999999998652210 0111 125
Q sequence1 158 GYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
.++.+|++++.++.+++.++.+.+.
T Consensus 141 ~~~~~s~~~~~~i~~~~~~i~~~~~ 165 (172)
T 2GJ8_B 141 ALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred eEEEEEcccCCCHHHHHHHHHHHhc
Confidence 7889999999999999999888764
##### No 243 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2GJ8_D tRNA modification GTPase trmE; G-domain dimer, alpha-beta-sandwich, Hydrolase; HET: ALF, MSE, GDP; 1.7A {Escherichia coli BL21(DE3)} SCOP: c.37.1.8
Probab=99.58 E-value=5.7e-19 Score=116.85 Aligned_cols=156 Identities=21% Similarity=0.238 Sum_probs=99.3 Template_Neff=12.600
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--------RPLSY 77 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 77 (184)
....+++++|..++|||||++++.............................+.+||++|....... .....
T Consensus 2 ~~~~~i~l~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2GJ8_D 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccEecCCCCCceeeEEEEEeeCCEEEEEEECCCccCCChHHHHHHHHHHHHHH
Confidence 3467899999999999999999987654322111110000001111112346789999996644221 22345
Q sequence1 78 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
..++++++|+|..+..++... ..+...+.......|+++++||.|....... .+.. ...
T Consensus 82 ~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~k~d~~~~~~~-------------------~~~~-~~~ 140 (172)
T 2GJ8_D 82 EQADRVLFMVDGTTTDAVDPA-EIWPEFIARLPAKLPITVVRNKADITGETLG-------------------MSEV-NGH 140 (172)
T ss_dssp HHCSEEEEEEETTSCCCCCHH-HHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-------------------EECC-SSC
T ss_pred hhCCEEEEEEeCCCCCCCCch-hhhHHHHHhCCCCCCEEEEEECcccCCCccc-------------------cccc-CCc
Confidence 678999999999876655443 2333333333356899999999998652210 0111 125
Q sequence1 158 GYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
.++.+|++++.++.+++.++.+.+.
T Consensus 141 ~~~~~s~~~~~~i~~~~~~i~~~~~ 165 (172)
T 2GJ8_D 141 ALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred eEEEEEcccCCCHHHHHHHHHHHhc
Confidence 7889999999999999999888764
##### No 244 #####
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>2GJA_B tRNA modification GTPase trmE; G-domain dimer, alpha-beta-sandwich, HYDROLASE; HET: ALF, GDP; 1.85A {Escherichia coli BL21(DE3)} SCOP: c.37.1.8
Probab=99.58 E-value=5.7e-19 Score=116.85 Aligned_cols=156 Identities=21% Similarity=0.238 Sum_probs=97.8 Template_Neff=12.600
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--------RPLSY 77 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 77 (184)
....+++++|..++|||||++++.............................+.+||++|....... .....
T Consensus 2 ~~~~~i~l~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2GJA_B 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccEecCCCCCceeeEEEEEeeCCEEEEEEECCCccCCChHHHHHHHHHHHHHH
Confidence 3467899999999999999999987654322111110000001111112346789999996644221 22345
Q sequence1 78 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
..++++++|+|..+..++... ..+...+.......|+++++||.|....... .+.. ...
T Consensus 82 ~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~k~d~~~~~~~-------------------~~~~-~~~ 140 (172)
T 2GJA_B 82 EQADRVLFMVDGTTTDAVDPA-EIWPEFIARLPAKLPITVVRNKADITGETLG-------------------MSEV-NGH 140 (172)
T ss_dssp HTCSEEEEEEETTTCCCCCHH-HHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-------------------EEEE-TTE
T ss_pred hhCCEEEEEEeCCCCCCCCch-hhhHHHHHhCCCCCCEEEEEECcccCCCccc-------------------cccc-CCc
Confidence 678999999999876655443 2333333333356899999999998652210 0111 125
Q sequence1 158 GYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
.++.+|++++.++.+++.++.+.+.
T Consensus 141 ~~~~~s~~~~~~i~~~~~~i~~~~~ 165 (172)
T 2GJA_B 141 ALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHC--
T ss_pred eEEEEEcccCCCHHHHHHHHHHHhc
Confidence 7889999999999999999888764
##### No 245 #####
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>3O47_B ADP-ribosylation factor GTPase-activating protein 1; structural genomics consortium, GTPase activation; HET: GDP; 2.8A {Homo sapiens}
Probab=99.58 E-value=5.8e-19 Score=129.96 Aligned_cols=164 Identities=16% Similarity=0.247 Sum_probs=104.5 Template_Neff=10.500
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
.+.++|+++|..++|||+|++++......... ++... ...........+.+||++|.+.+...+..++..+|++++
T Consensus 163 ~~~~~i~vvG~~~~GKssli~~l~~~~~~~~~-~t~~~---~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~ 238 (329)
T 3O47_B 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGF---NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETTE---EEEEEEETTEEEEEEECC-----CCSHHHHHTTCCEEEE
T ss_pred cceeEEEEEcccccCHHHHHHHhhcCCCcccC-Cccce---eEEEEEeCCEEEEEEEcCCChhhHHHHHHHhccCCEEEE
Confidence 44569999999999999999999877543321 11111 111122234578899999998887778778889999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
|+|+.+..++......+...+... ....|+++++||.|+........ ... .......... ...++.+|+
T Consensus 239 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~nK~D~~~~~~~~~-~~~--------~~~~~~~~~~-~~~~~~~Sa 308 (329)
T 3O47_B 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE-ITD--------KLGLHSLRHR-NWYIQATCA 308 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH-HHH--------HHTCTTCCSS-CEEEEECBT
T ss_pred EEeCCCHHHHHHHHHHHHHHHhcccccCCEEEEEEeCcCCCccCCHHH-HHH--------HhChhHhcCC-CeEEEEccC
Confidence 999988766665544444444322 23588999999999876322111 100 0001111111 257899999
Q sequence1 165 KTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~~ 183 (184)
+++.|+.+++.++.+.+..
T Consensus 309 ~~~~~v~~l~~~l~~~i~~ 327 (329)
T 3O47_B 309 TSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp TTTBTHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHc
Confidence 9999999999998887653
##### No 246 #####
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>6WWZ_A Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit; GPCR, Chemokine, Chemokine receptor, Complex; 3.34A {Rattus norvegicus}
Probab=99.58 E-value=6.3e-19 Score=124.89 Aligned_cols=176 Identities=16% Similarity=0.148 Sum_probs=58.0 Template_Neff=10.800
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
...++++++|.+++|||+|++++.................. .........+.+||++|.+.+...+..++..++++++
T Consensus 43 ~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~il~ 120 (250)
T 6WWZ_A 43 AKDVKLLLLGADNSGKSTIVKQMKIIHGGSGGSGGTTGIVE--THFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIF 120 (250)
T ss_dssp TSEEEEEECCCSSSSHHHHHC-----------------------------------------------------------
T ss_pred cCceeEEEEcCCCCCchHHHHHHHHHhCCCCCCCCceeeEE--EEEEECCEEEEEEEcCCCccchHHHHHhhcCccEEEE
Confidence 45789999999999999999998765443111111111111 1122234578899999988777777778889999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKH-----------FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEP---VKPEEGRDMA 151 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~-----------~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 151 (184)
|+|.++..++......+...... .....|+++++||+|+................. ........+.
T Consensus 121 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (250)
T 6WWZ_A 121 CVDLSDYDQVLHEDETTNRMHESLMDFDSICNNKFFIDTSIILFLNKKDLFGEKIKKSPLTICFPEYTGPNTYEDAAAYI 200 (250)
T ss_dssp -----------CCEEECSEEECSCCHHSTSSEEESC-----CHHHHHHSSCSCEEEHHTTTSGGSTCCCSSSGGGTHHHH
T ss_pred EEehhhcccccccccccchhHHHHHHHHHHHcChhhcCCeEEEEEechhHhHHHHhcCCccccCCCCCCCCCHHHHHHHH
Confidence 99999866544332111111100 012689999999999976432110000000000 0000000000
Q sequence1 152 N---------RIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 152 ~---------~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
. ....+.++.+|+.++.++.++|.++.+.+++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 241 (250)
T 6WWZ_A 201 QAQFESKNRSPNKEIYCHMTCATDTNNAQVIFDAVTDIIIA 241 (250)
T ss_dssp HHHHHHTCCCSSCCEEEEECCTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCCeEEEEEEEeCChhhHHHHHHHHHHHHHH
Confidence 0 0112457899999999999999998887653
##### No 247 #####
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>4WNR_A Mb Roco2 RocCORdC 287-629 (E.C.3.6.5.2.); Roco proteins, GAD, small G-protein; HET: SO4, GDP; 2.9A {Methanosarcina barkeri}
Probab=99.57 E-value=8.4e-19 Score=129.89 Aligned_cols=159 Identities=19% Similarity=0.266 Sum_probs=106.2 Template_Neff=10.900
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVI 83 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 83 (184)
.....+++++|.+++|||||++++....+.....++..... ...+........+.+||++|++.+...+..++...+++
T Consensus 38 ~~~~~ki~l~G~~~~GKtsl~~~L~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 117 (349)
T 4WNR_A 38 PLNEVKVLLVGDGEAGKTSLLKRLLGEGFDGNEHQTQGINIKKWGFKDKDKEIKVNFWDFGGQEIMHATHQFFLSKRSLY 117 (349)
T ss_dssp ECCEEEEEEESSTTSSHHHHHHHHHTCCCCSCCSSCCSCEEEEEEEEETTEEEEEEEEECCHHHHHHTGGGGGCCSSSEE
T ss_pred ccceEEEEEECCCCCCHHHHHHHHhCCCCCCCCCcceeeEeEEeeeecCCCeEEEEEEEcCCCcCcccceeeeecCCeEE
Confidence 45678999999999999999999987765433222222111 11122223456899999999998888888888889999
Q sequence1 84 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS 163 (184)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (184)
++|+|++..... ..|...+....+..|+++|+||.|......... + ..... ......++.+|
T Consensus 118 llv~d~~~~~~~----~~wl~~i~~~~~~~~vilV~tk~D~~~~~~~~~---~---------~~~~~--~~~~~~~~~vs 179 (349)
T 4WNR_A 118 ILVLDSRRDEKA----EYWLKHIRSFGGDSPVLVALNKIDENPSFELNR---K---------FLQEK--YPSIKGFFRIS 179 (349)
T ss_dssp EEEECSSSTTCH----HHHHHHHHHHHTTCCEEEEECCTTTCTTCCCCH---H---------HHHHH--CTTEEEEEECB
T ss_pred EEEEeCCChHHH----HHHHHHHHHhcCCCCEEEEEeccCCCCchHHcH---H---------HHHHH--CcccceeEEee
Confidence 999999875332 334444433335789999999999875321100 0 00000 00124678899
Q sequence1 164 AKTKDGVREVFEMATRAA 181 (184)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~ 181 (184)
++++.++.++++.+.+.+
T Consensus 180 ~~~~~~i~~l~~~i~~~~ 197 (349)
T 4WNR_A 180 CKEDRGIEGFSQKLKKEL 197 (349)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred cCCccCHHHHHHHHHHHH
Confidence 999999998888777655
##### No 248 #####
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>3TAH_A Ferrous iron uptake transporter protein; G-protein, GTPase, Iron transport, Potassium; HET: BGO, GOL; 1.85A {Streptococcus thermophilus}
Probab=99.57 E-value=8.5e-19 Score=126.06 Aligned_cols=151 Identities=17% Similarity=0.200 Sum_probs=92.8 Template_Neff=9.700
Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLSY--PD 79 (184)
Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~ 79 (184)
..+|+++|.+++|||||++++.+........+..+.... ..... ....+.+||+||...+.. ....++ ..
T Consensus 3 ~~~I~ivG~~n~GKStL~n~l~~~~~~~~~~~~~t~~~~-~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (272)
T 3TAH_A 3 MTEIALIGNPASGKTSLFNLITGHNQRVGNWPGVTVERK-SGLVK-KNKDLEIQDLPGIYSMSPYSPEEKVARDYLLSQR 80 (272)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSCSEEE-EEEET-TEEEEEEEECCCCSCCCTTCHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHCCCCCcCCCCCCceeeE-EEEEe-cCCcEEEEeCCCcccCCCCCHHHHHHHHHHHhCC
Confidence 578999999999999999999876542211111111111 00111 234788999999765432 123333 57
Q sequence1 80 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 159 (184)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
+|++++|+|.++...... +...+. ....|+++|+||+|+.......... ..+.... ..++
T Consensus 81 ~d~ii~VvD~~~~~~~~~----~~~~l~--~~~~p~ilv~NK~D~~~~~~~~~~~-------------~~l~~~~-~~~v 140 (272)
T 3TAH_A 81 ADSILNVVDATNLERNLY----LTTQLI--ETGIPVTIALNMIDVLDGQGKKINV-------------DKLSYHL-GVPV 140 (272)
T ss_dssp CSEEEEEEEGGGHHHHHH----HHHHHH--HTTSCEEEEEECHHHHHHTTCCCCH-------------HHHHHHH-TSCE
T ss_pred CCEEEEEEeCCchHHHHH----HHHHHH--HhCCCEEEEEeCHHHhccccccccH-------------HHHHHhh-CCCE
Confidence 899999999987533222 111121 1358899999999998643211100 0011111 2578
Q sequence1 160 MECSAKTKDGVREVFEMATRA 180 (184)
Q Consensus 160 ~~~s~~~~~~i~~~~~~~~~~ 180 (184)
+.+||+++.|++++++.+...
T Consensus 141 ~~~Sa~~~~gi~~l~~~i~~~ 161 (272)
T 3TAH_A 141 VATSALKQTGVDQVVKKAAHT 161 (272)
T ss_dssp EECBTTTTBSHHHHHHHHHTS
T ss_pred EEeecCCCcCHHHHHHHHHHh
Confidence 999999999999999877664
##### No 249 #####
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>2HT6_A GTP-binding protein GEM; small G-protein, signaling protein; HET: GDP; 2.4A {Homo sapiens}
Probab=99.57 E-value=8.7e-19 Score=116.07 Aligned_cols=166 Identities=25% Similarity=0.293 Sum_probs=100.5 Template_Neff=12.700
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPT-VFENYVADIEVDGKQVELALWDTAGLEDY-DRLRPLSYPDTD 81 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~~t-~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~ 81 (184)
....++|+++|.+++|||||++++........ ..+. ...........++....+.++|.+|.... ...+..+...+|
T Consensus 3 ~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 82 (174)
T 2HT6_A 3 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (174)
T ss_dssp CCSEEEEEEECSTTSSHHHHHHHHCCC----CCCSCCCCTTEEEEEEEETTEEEEEEEECCCCCC--CTHHHHHHHHHCS
T ss_pred CcceEEEEEECCCCCChHHHHHHHhccccccccccccccccEEEEEEEeCCcEEEEEEEEcCCCCcccHHHHHhhcccCC
Confidence 45678999999999999999999986433211 1111 11111222223333455677787764422 223445556789
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
++++++++++..++......+...... .....|+++|+||.|+....... .......+... ...++
T Consensus 83 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~d~~~~~~~~------------~~~~~~~~~~~-~~~~~ 149 (174)
T 2HT6_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVS------------VSEGRACAVVF-DCKFI 149 (174)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSC------------HHHHHHHHHHH-TCEEE
T ss_pred EEEEEEECCChhhHHHHHHHHHHHHHHcCCCCCCEEEEEeCCccccCceec------------hHHHHHHHHHc-CCeEE
Confidence 999999998866665554333332221 12368999999999987632210 01111111122 26788
Q sequence1 161 ECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
++|++++.++.+++.++.+.+.+
T Consensus 150 ~~s~~~~~~i~~~~~~l~~~~~~ 172 (174)
T 2HT6_A 150 ETSAAVQHNVKELFEGIVRQVRL 172 (174)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EeccccCCCHHHHHHHHHHHHhc
Confidence 99999999999999999887754
##### No 250 #####
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>3B1V_A Ferrous iron uptake transporter protein; G protein, iron transport, GTPase; HET: GGM; 1.85A {Streptococcus thermophilus}
Probab=99.57 E-value=9.9e-19 Score=125.67 Aligned_cols=153 Identities=16% Similarity=0.200 Sum_probs=92.9 Template_Neff=9.900
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLSY--P 78 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~ 78 (184)
...+|+++|.+|+|||||++++.+........+....... .... .....+.+||+||...... .+..++ .
T Consensus 2 ~~~~i~ivG~~~~GKStL~n~l~~~~~~~~~~~~~t~~~~-~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (272)
T 3B1V_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERK-SGLV-KKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCE-EEEC-TTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceeeee-EEEE-eeCCCeEEEeCCCCccCCCCCHHHHHHHHHHHhc
Confidence 3578999999999999999999876542211111111110 0011 1234788999999754322 123333 5
Q sequence1 79 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFG 158 (184)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
.+|++++|+|.++....... ...+.. ...|+++|+||+|+.......... ..+.... ..+
T Consensus 80 ~~d~il~vvD~~~~~~~~~~----~~~l~~--~~~p~ilv~NK~D~~~~~~~~~~~-------------~~l~~~~-~~~ 139 (272)
T 3B1V_A 80 RADSILNVVDATNLERNLYL----TTQLIE--TGIPVTIALNMIDVLDGQGKKINV-------------DKLSYHL-GVP 139 (272)
T ss_dssp CCSEEEEEEEGGGHHHHHHH----HHHHHH--TCSCEEEEEECHHHHHHTTCCCCH-------------HHHHHHH-TSC
T ss_pred CCCEEEEEeeCCchHHHHHH----HHHHHH--hCCCEEEEEeChHHhccccccccH-------------HHHHHHh-CCC
Confidence 68999999999875433222 111211 358999999999998642211100 0011111 257
Q sequence1 159 YMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 159 ~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
++.+||+++.|+.+++.++.+.+
T Consensus 140 ~~~~Sa~~~~gi~~l~~~i~~~~ 162 (272)
T 3B1V_A 140 VVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp EEECBTTTTBSHHHHHHHHHHSC
T ss_pred eEEeecCCCcCHHHHHHHHHHhc
Confidence 88999999999999998877653
##### No 251 #####
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>5KTY_A Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GDP; 2.522A {Homo sapiens}
Probab=99.57 E-value=1e-18 Score=132.69 Aligned_cols=161 Identities=16% Similarity=0.173 Sum_probs=104.3 Template_Neff=10.800
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN---YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
.....+|+++|.+++|||+|++++....+........... ....+...+....+.+||++|++.+.. ++..++
T Consensus 239 ~~~~~~i~vvG~~~~GKt~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~----~~~~~d 314 (424)
T 5KTY_A 239 QRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESEFLTE----AEIICD 314 (424)
T ss_dssp CCSEEEEEEECSTTSSHHHHHHHHTTCCHHHHTTCCTTTCCSEEEEEEEETTEEEEEEEEEECCCSCCCS----GGGCSS
T ss_pred CceEEEEEEEcCCCCCHHHHHHHHhCCccccccCccccCCceeEEEEEEECCeEEEEEEEEcCChHhhHH----HHhhCC
Confidence 4557899999999999999999998765433221111100 011222334456788999999764432 456799
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYM 160 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (184)
++++|+|+++..++......+...... ...|+++|+||+|+...... .......++...+. ..++
T Consensus 315 ~vvlv~d~~~~~s~~~~~~~~~~~~~~--~~~piivv~nK~D~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 380 (424)
T 5KTY_A 315 VVCLVYDVSNPKSFEYCARIFKQHFMD--SRIPCLIVAAKSDLHEVKQE------------YSISPTDFCRKHKMPPPQA 380 (424)
T ss_dssp EEEEEEETTCTTHHHHHHHHCCCCCTT--CSSCEEEEEECTTSCCCCCC------------SSSCHHHHHHHTTCCCCEE
T ss_pred EEEEEeeCCChhHHHHHHHHHHHhccc--CCCCEEEEEECCCcchhccc------------ccCCHHHHHHHcCCCCCee
Confidence 999999999877776654333332221 47899999999998763211 01112222333222 2356
Q sequence1 161 ECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
.+|++++.|+.++|.++.+.++.
T Consensus 381 ~~Sa~~~~~i~~~~~~l~~~~~~ 403 (424)
T 5KTY_A 381 FTCNTADAPSKDIFVKLTTMAMY 403 (424)
T ss_dssp CCSCCSSSCCCHHHHHHHHHHHS
T ss_pred eecCCCCCChHHHHHHHHHHHhC
Confidence 89999999999999998887653
##### No 252 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6VS4_A Small COPII coat GTPase SAR1; SSGCID, COPII coat GTPase SAR1; HET: PEG, GDP; 2.4A {Encephalitozoon cuniculi (strain GB-M1)}
Probab=99.57 E-value=1e-18 Score=121.81 Aligned_cols=172 Identities=13% Similarity=0.139 Sum_probs=107.7 Template_Neff=11.100
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
.+..+|+++|++++|||+|++++........ .++.. ..... .......+.+||+||...+...+..++..+|++++
T Consensus 37 ~~~~~i~i~G~~~~GKssli~~l~~~~~~~~-~~t~~-~~~~~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 112 (225)
T 6VS4_A 37 GKPSSILFLGIDNAGKTTLVNKLKSDSTDVY-MPTHH-PSTSY--IEIGNLKAQVIDLGGHTAARLAWRDYFYDCHGIVF 112 (225)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHHSCTTTCCE-ECCSS-TTEEE--EEETTEEEEEEEECCSCGGGGGGGGGGTTCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCcc-cCccC-CceEE--EEECCEEEEEEECCcchHHHHHHHHHhccCCEEEE
Confidence 5678999999999999999999886543211 11111 11111 11233578899999988777777777789999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD---MANRIGAFGYMEC 162 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 162 (184)
|+|+++..++......+...... ....|+++++||.|.......................... .......+.++.+
T Consensus 113 v~d~~~~~~~~~~~~~l~~~~~~-~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (225)
T 6VS4_A 113 IVDVHDVERFQEVREAYETVLSL-EKRAPVVVLMNKIDLEGHTPETAEADYQWKSWLSQETGIENQEDPERGQVVKIFYV 191 (225)
T ss_dssp EEESSCGGGHHHHHHHHHHHHHH-CSSSCEEEEEECGGGGTCCHHHHHTCHHHHHHHHHHHCCCCBCCGGGSSCEEEEEC
T ss_pred EEECCChhHHHHHHHHHHHHHHh-cCCCCEEEEEecCcCCCCCccchHHHHHHHHHHHHHhCCccccCccccceEEEEEE
Confidence 99999876665554434333322 2468999999999997642221111100000000000000 0001123568899
Q sequence1 163 SAKTKD------GVREVFEMATRAAL 182 (184)
Q Consensus 163 s~~~~~------~i~~~~~~~~~~~~ 182 (184)
|+.+++ |+.++|.|+.+.+.
T Consensus 192 s~~~~~~~~~~~gi~~~~~~l~~~~~ 217 (225)
T 6VS4_A 192 TITSGSANSITGPLARAFKWLEAMIT 217 (225)
T ss_dssp CTTSGGGGCTTSHHHHHHHHHHHHHH
T ss_pred EeecCCcccCChhHHHHHHHHHHHHh
Confidence 999999 99999999887664
##### No 253 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2WJI_A FERROUS IRON TRANSPORT PROTEIN B; MEMBRANE G-PROTEINS, FERROUS IRON TRANSPORT; HET: GNP; 1.903A {METHANOCALDOCOCCUS JANNASCHII}
Probab=99.56 E-value=1.1e-18 Score=115.57 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=94.0 Template_Neff=11.700
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLSY--P 78 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~ 78 (184)
+.++++++|++++|||+|++++.+........++...... ..........+.+||++|...+.. ....+. .
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2WJI_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKK-EGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCC-EEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHCCCCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCCccCCCCCccccce-EEEEEECCeEEEEEECCCCccCCccchHHHHHHHHHHcc
Confidence 4689999999999999999999876644322222211111 111122234688999999765432 222222 2
Q sequence1 79 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFG 158 (184)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
.++++++++|......... +...... ...|+++|+||+|+......... ...++...+ ..
T Consensus 81 ~~~~v~~v~d~~~~~~~~~----~~~~~~~--~~~~~ivv~~k~D~~~~~~~~~~-------------~~~~~~~~~-~~ 140 (165)
T 2WJI_A 81 KPDLVVNIVDATALERNLY----LTLQLME--MGANLLLALNKMDLAKSLGIEID-------------VDKLEKILG-VK 140 (165)
T ss_dssp CCSEEEEEEETTCHHHHHH----HHHHHHH--TTCCEEEEEECHHHHHHTTCCCC-------------HHHHHHHHT-SC
T ss_pred CCCEEEEEEechHHHHHHH----HHHHHHH--cCCcEEEEEEcHHHhhhcCceec-------------HHHHHHHHC-Ce
Confidence 4678888888876433221 2222211 25789999999999764322110 111122222 57
Q sequence1 159 YMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 159 ~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
++.+|+.++.++.+++.++.+.+.
T Consensus 141 ~~~~s~~~~~~v~~~~~~l~~~~~ 164 (165)
T 2WJI_A 141 VVPLSAAKKMGIEELKKAISIAVK 164 (165)
T ss_dssp EEECBGGGTBSHHHHHHHHHHHTT
T ss_pred EEEeecccccCHHHHHHHHHHHcc
Confidence 899999999999999998887653
##### No 254 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2LKD_A Translation initiation factor IF-2; TRANSLATION; HET: GDP; NMR {Geobacillus stearothermophilus}
Probab=99.56 E-value=1.3e-18 Score=116.63 Aligned_cols=167 Identities=22% Similarity=0.263 Sum_probs=101.2 Template_Neff=11.800
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
+...+..+|+++|..++|||||++.+................. ...........+.+||++|.+.+...+..++..+|+
T Consensus 3 ~~~~~~~~i~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 81 (178)
T 2LKD_A 3 HMVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHI-GAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDI 81 (178)
T ss_dssp CCCCCCCCCEEEECTTSCTTHHHHHTTTTSSCSSSSCBSSSSS-CBCBCCSSSSCCBCSCBTTBCSSSCCSSSTTCSSCC
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhcCCCChhhcCCcceec-eEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCE
Confidence 4556788999999999999999999986544322211111111 111111123467899999988777777777788999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC 162 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (184)
+++|+|.++....... ..+.. .. ....|+++++||.|+....... ....... ...... .......++.+
T Consensus 82 ii~v~d~~~~~~~~~~-~~~~~-~~--~~~~~~i~v~nk~D~~~~~~~~-~~~~~~~----~~~~~~--~~~~~~~~~~~ 150 (178)
T 2LKD_A 82 VILVVAADDGVMPQTV-EAINH-AK--AANVPIIVAINKMDKPEANPDR-VMQELME----YNLVPE--EWGGDTIFCKL 150 (178)
T ss_dssp EEEEEETTTCSCHHHH-HHHHH-HH--HHTCCEEEEEECTTSTTCCHHH-HHHHHHH----TTCCCT--TTTSSEEEEEC
T ss_pred EEEEEECCCCCChhHH-HHHHH-HH--HcCCCEEEEEECcCCCCCCHHH-HHHHHHH----cCCChh--hhCCCceEEEc
Confidence 9999998764322221 11111 11 2367899999999997542111 1100000 000000 00012568889
Q sequence1 163 SAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 163 s~~~~~~i~~~~~~~~~~~ 181 (184)
|++++.|+.+++.++...+
T Consensus 151 S~~~~~~i~~~~~~i~~~~ 169 (178)
T 2LKD_A 151 SAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp CTTTTCHHHHHHHHHHHHH
T ss_pred ccccCccHHHHHHHHHHHH
Confidence 9999999999999887654
##### No 255 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4C0L_A MITOCHONDRIAL RHO GTPASE (E.C.3.6.5.-); HYDROLASE, MITOCHONDRIAL TRANSPORT, CALCIUM-BINDING GTPASE; HET: GDP, SO4; 3.0A {DROSOPHILA MELANOGASTER}
Probab=99.56 E-value=1.3e-18 Score=132.17 Aligned_cols=161 Identities=19% Similarity=0.258 Sum_probs=106.4 Template_Neff=10.600
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
..+..+|+++|.+++|||+|++++....+.... ...........+...+....+.+||++|...+...+. ++..++
T Consensus 243 ~~~~~~i~iiG~~~~GKtsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~d~~g~~~~~~~~~-~~~~~d 321 (423)
T 4C0L_A 243 SRSVYKCHVIGPKGSGKTGMCRGFLVEDMHKLIGKEFKTNVVNCINSVQVYGQEKHLILRDIDVRHALDPLQP-QEVNCD 321 (423)
T ss_dssp CCCEEEEEEEEETTSSCHHHHHTTTCSCGGGGSSCCCCSCCSCEEEEEEETTEEEEEEEEEEEESSTTCCCCH-HHHCSS
T ss_pred CCeEEEEEEECCCCCChhHHHHHHhhcchhhhcCCccCCCceeeeeEEEECCeEEEEEEEEcCcccccccccc-ccCCCC
Confidence 356789999999999999999999876432211 0111111111222334455678999999887766655 667899
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
++++|+|+.+..++......+..... ....|+++|+||.|+...... .......++...+...+++
T Consensus 322 ~vi~v~D~~~~~s~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 387 (423)
T 4C0L_A 322 VACLVYDSSNPRSFEYVARIYIKYYA--ESKIPVMIVGTKCDMDERRQD------------YLMQPSEFCDKYKLLPPHL 387 (423)
T ss_dssp EEEEEEETTCTTTHHHHHHHCCCCCT--TCSSCEEEEEECTTSCCCCCS------------SSSCHHHHHHHTTCCCCEE
T ss_pred EEEEEeeCCChhHHHHHHHHHHHHhc--cCCCCEEEEEeCCCcchhhcc------------cccCHHHHHHHcCCCCCEE
Confidence 99999999987666665444433332 247899999999999863211 0111222333333367899
Q sequence1 162 CSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~ 182 (184)
+|+++ |+.+++..+...++
T Consensus 388 ~Sa~~--~v~~l~~~i~~~~~ 406 (423)
T 4C0L_A 388 FSLKT--NKKELYTKLATMAA 406 (423)
T ss_dssp ECTTT--CCTHHHHHHHHHHH
T ss_pred eeCCC--ChHHHHHHHHHHHh
Confidence 99998 89999998887664
##### No 256 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2Q3F_A Ras-related GTP-binding protein D; Structural Genomics, GTP-binding, RRAGD, Structural; HET: MSE, GNP; 2.1A {Homo sapiens}
Probab=99.56 E-value=1.3e-18 Score=116.72 Aligned_cols=168 Identities=13% Similarity=0.226 Sum_probs=99.2 Template_Neff=12.000
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVD-GKQVELALWDTAGLEDYDRLR---PLSYPDT 80 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~---~~~~~~~ 80 (184)
.+.++|+++|..++|||+|++++.. .+........... ........ +....+.+||++|++.+.... ..++..+
T Consensus 2 ~~~~~i~~~G~~~~GKs~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 80 (181)
T 2Q3F_A 2 EVKPRILLMGLRRSGKSSIQKVVFH-KMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQIDFFDPTFDYEMIFRGT 80 (181)
T ss_dssp -CCCEEEEEESTTSSHHHHHHHHHH-CCCGGGGGGCCCCCSCEEEEECSCSSCCEEEEECCCCCSCCCTTSCHHHHHHTE
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHhc-CCCcccccccCCCcceeeEecCCCCceeEEEEECCCChhhcCccCCHHHHhhcC
Confidence 3568999999999999999999886 3322111100000 00011111 234678899999987665443 5677889
Q sequence1 81 DVILMCFSIDSPDSLENIPEKWTPEVKH---FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR---I 154 (184)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 154 (184)
|++++|+|.++. ++... ..+...+.. .....|+++++||.|+............ ........++.. .
T Consensus 81 ~~~i~v~d~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~i~v~~k~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 153 (181)
T 2Q3F_A 81 GALIFVIDSQDD-YMEAL-ARLHLTVTRAYKVNTDINFEVFIHKVDGLSDDHKIETQRD-----IHQRANDDLADAGLEK 153 (181)
T ss_dssp EEEEEEEETTSC-CHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCTTHHHHHHHH-----HHHHHHHHHHHTTCTT
T ss_pred CEEEEEEeCCCh-HHHHH-HHHHHHHHHHHHHCCCCEEEEEEEcccCCChHhHHHHHHH-----HHHHHHHHhhhhcccc
Confidence 999999999874 33322 222222221 1236899999999998763211110000 001111111111 0
Q sequence1 155 GAFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 155 ~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
....++.+|++ +.|+.++++++...++
T Consensus 154 ~~~~~~~~S~~-~~~v~~~~~~~~~~~~ 180 (181)
T 2Q3F_A 154 IHLSFYLTSIY-DHSIFEAFSKVVQKLI 180 (181)
T ss_dssp SCEEEEEECTT-STHHHHHHHHHHHTTC
T ss_pred CceEEEEeccc-chhHHHHHHHHHHHHC
Confidence 12568889999 9999999999887664
##### No 257 #####
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>4DHE_A Probable GTP-binding protein EngB; melioidosis, RAS-like GTPase, cell division; 2.2A {Burkholderia thailandensis}
Probab=99.56 E-value=1.3e-18 Score=121.36 Aligned_cols=168 Identities=13% Similarity=0.106 Sum_probs=98.6 Template_Neff=10.500
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEV--YVP-TVFENYVADIEVDGKQVELALWDTAGLEDY----------DRL 72 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~--~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~~ 72 (184)
.+.++|+++|..++|||||++++........ ..+ ++.......... .....+.+||++|.... ...
T Consensus 27 ~~~~~i~lvG~~~~GKssl~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ 105 (223)
T 4DHE_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGP-AAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESC-TTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHhcCCCcccccCCCCccceEEEEEcCC-CCCCcEEEEecCCCcccCCChHHHHHHHHH
Confidence 5678999999999999999999987653211 111 111111111111 12357899999997643 222
Q sequence1 73 RPLSYPD---TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 149 (184)
Q Consensus 73 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (184)
...++.. ++++++|+|+++...... ..+...+.. ...|+++|+||+|+................. .....
T Consensus 106 ~~~~~~~~~~~~~iilvvD~~~~~~~~~--~~~~~~l~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~l---~~~~~ 178 (223)
T 4DHE_A 106 LSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSL---DAYRD 178 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHhhCccccEEEEEeeCCCCCCHHH--HHHHHHHHH--hCCCEEEEEeCHhhCCHHHHHHHHHHHHHHH---HHHHH
Confidence 3333444 889999999987433222 223333322 2589999999999986432211111111000 00000
Q sequence1 150 MANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 150 ~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
........++++|+.++.|+.+++.++.+.+.
T Consensus 179 -~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 210 (223)
T 4DHE_A 179 -AGYAGKLTVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp -HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred -ccccCCceEEEeeCCcCCCHHHHHHHHHHHhc
Confidence 00112367899999999999999999887664
##### No 258 #####
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>2WJJ_B FERROUS IRON TRANSPORT PROTEIN B; METAL TRANSPORT, MEMBRANE G-PROTEINS, FERROUS; HET: MSE, GDP; 2.405A {METHANOCALDOCOCCUS JANNASCHII}
Probab=99.56 E-value=1.4e-18 Score=115.26 Aligned_cols=157 Identities=14% Similarity=0.122 Sum_probs=96.3 Template_Neff=11.900
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLSYP- 78 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~- 78 (184)
...++|+++|++|+|||||++++..........+.....+ ...........+.+||++|...+.. .+..++.
T Consensus 2 ~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~ 80 (168)
T 2WJJ_B 2 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEK-KEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIIN 80 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHSCSCEEEEECTTSCCEE-EEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHhCCCCCcCCCCCcccee-eeeEeEECCeeEEEEEcCCCcccCccchHHHHHHHHHHh
Confidence 3468999999999999999999987654432222211111 1111112234688999999765432 2233332
Q sequence1 79 -DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184)
Q Consensus 79 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
.++++++++|..+...... +...... ...|+++|+||+|+........ ....++...+ .
T Consensus 81 ~~~~~i~~~~d~~~~~~~~~----~~~~~~~--~~~~~i~v~nk~D~~~~~~~~~-------------~~~~l~~~~~-~ 140 (168)
T 2WJJ_B 81 EKPDLVVNIVDATALERNLY----LTLQLME--MGANLLLALNKMDLAKSLGIEI-------------DVDKLEKILG-V 140 (168)
T ss_dssp HCCSEEEEEEEGGGHHHHHH----HHHHHHH--TTCCEEEEEECHHHHHHTTCCC-------------CHHHHHHHSC-S
T ss_pred cCCCEEEEEEechHHhhhHH----HHHHHHH--cCCCEEEEEEcHHHhhhcCccc-------------cHHHHHHHHC-C
Confidence 4678888888776433221 1111211 2578999999999976432111 0111222222 5
Q sequence1 158 GYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
.++++|+.++.++.+++.++.+.+.+
T Consensus 141 ~~~~~s~~~~~~i~~~~~~l~~~~~~ 166 (168)
T 2WJJ_B 141 KVVPLSAAKKMGIEELKKAISIAVKD 166 (168)
T ss_dssp CEEECCTTTTTTHHHHHHHHHHHTTC
T ss_pred eEEEeecccCCCHHHHHHHHHHHhhc
Confidence 78999999999999999998887653
##### No 259 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4DHE_B Probable GTP-binding protein EngB; melioidosis, RAS-like GTPase, cell division; 2.2A {Burkholderia thailandensis}
Probab=99.56 E-value=1.4e-18 Score=121.24 Aligned_cols=168 Identities=13% Similarity=0.081 Sum_probs=96.1 Template_Neff=10.500
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPE---VYVPTVFENYVADIEVDGKQVELALWDTAGLEDY----------DRL 72 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~~ 72 (184)
...++|+++|..++|||||++++....... ...++........... .....+.+||++|.... ..+
T Consensus 27 ~~~~~i~ivG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ 105 (223)
T 4DHE_B 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGP-AAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSCCC--------CEEEEEESC-TTSCSEEEEECCCC---------CHHHHHH
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHhcCCCcccCCCCCcccceEEEEEeCC-CCCCcEEEEeCCCCcccCCChHHHHHHHHH
Confidence 567899999999999999999998765321 1111111111111111 12357889999998653 222
Q sequence1 73 RPLSYPD---TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 149 (184)
Q Consensus 73 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (184)
...++.. ++++++|+|+.+...... ..+...+.. ...|+++|+||+|+...........+..... .....
T Consensus 106 ~~~~~~~~~~~~~ii~v~D~~~~~~~~~--~~~~~~l~~--~~~~iilv~nK~D~~~~~~~~~~~~~~~~~l---~~~~~ 178 (223)
T 4DHE_B 106 LSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSL---DAYRD 178 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCSCHHH--HHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHhhCcccceEEEEEeCCCCCCHHH--HHHHHHHHH--hCCCEEEEEeCHHhCCHHHHHHHHHHHHHHH---HHHHh
Confidence 3334444 889999999986432221 223333322 2589999999999986532211111111000 00000
Q sequence1 150 MANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 150 ~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
........++++|+.++.|+.++|.++...+.
T Consensus 179 -~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 210 (223)
T 4DHE_B 179 -AGYAGKLTVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp -TTCCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred -ccccCCceEEEeeCCcCCCHHHHHHHHHHHhc
Confidence 00112367999999999999999999877654
##### No 260 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3LLU_A Ras-related GTP-binding protein C; Structural Genomics Consortium, SGC, GTP-binding; HET: GNP; 1.4A {Homo sapiens}
Probab=99.56 E-value=1.5e-18 Score=118.53 Aligned_cols=168 Identities=13% Similarity=0.223 Sum_probs=96.9 Template_Neff=11.200
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEV-DGKQVELALWDTAGLEDYDRLR---PLSYPD 79 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~---~~~~~~ 79 (184)
.....+|+++|..++|||+|++++.. ............. ....... ++....+.+||++|++.+.... ..++..
T Consensus 17 ~~~~~~i~v~G~~~~GKssli~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 95 (196)
T 3LLU_A 17 QGSKPRILLMGLRRSGKSSIQKVVFH-KMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG 95 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHS-CCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHhc-cCCcccccccccceeeEEcccCCCCCeeEEEEECCCCccccCccCCHHHHhcc
Confidence 45678999999999999999999886 3221111100000 0111111 1245678999999987765443 667788
Q sequence1 80 TDVILMCFSIDSP--DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR---- 153 (184)
Q Consensus 80 ~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 153 (184)
++++++|+|+.+. .++......+.. ........|+++++||.|+............ ........++..
T Consensus 96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~-~~~~~~~~~~v~v~~k~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 169 (196)
T 3LLU_A 96 TGALIYVIDAQDDYMEALTRLHITVSK-AYKVNPDMNFEVFIHKVDGLSDDHKIETQRD-----IHQRANDDLADAGLEK 169 (196)
T ss_dssp CSEEEEEEETTSCCHHHHHHHHHHHHH-HHHHCTTCEEEEEEECGGGSCHHHHHHHHHH-----HHHHHHHHHHHTTCTT
T ss_pred CCEEEEEEeCCCchHHHHHHHHHHHHH-HHHhCCCCeEEEEEEccCCCChHHHHHHHHH-----HHHHHHHHhhhhhhhh
Confidence 9999999999875 222221111111 1112246899999999999873211110000 001111111111
Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
.+ ..++++|++ +.|+.++|+++++.+
T Consensus 170 ~~-~~~~~~S~~-~~nv~~~~~~l~~~~ 195 (196)
T 3LLU_A 170 LH-LSFYLTSIY-DHSIFEAFSKVVQKL 195 (196)
T ss_dssp SC-EEEEEECTT-STHHHHHHHHHHHHT
T ss_pred cC-cEEEEeccc-cccHHHHHHHHHHHh
Confidence 22 568889998 689999999887765
##### No 261 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4C0K_A MITOCHONDRIAL RHO GTPASE (E.C.3.6.5.-); HYDROLASE, MITOCHONDRIAL TRANSPORT, CALCIUM-BINDING GTPASE; HET: SO4; 2.801A {DROSOPHILA MELANOGASTER}
Probab=99.56 E-value=1.5e-18 Score=131.66 Aligned_cols=161 Identities=19% Similarity=0.258 Sum_probs=104.9 Template_Neff=10.900
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
.....+|+++|.+++|||||++++....+.... ...........+...+....+.+||++|...+...+. ++..++
T Consensus 243 ~~~~~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~-~~~~~~ 321 (423)
T 4C0K_A 243 SRSVYKCHVIGPKGSGKTGMCRGFLVEDMHKLIGKEFKTNVVNCINSVQVYGQEKHLILRDIDVRHALDPLQP-QEVNCD 321 (423)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHTTSCSCCTTSTTCCCSSCCSEEEEEEEETTEEEEEEEEECCCCCSSSCCCH-HHHCSS
T ss_pred CCeEEEEEEECCCCCChhHHHHHHhccchhhhcCCcccCCceeeEEEEEECCeEEEEEEEEcCccccccccch-hhcCCC
Confidence 355789999999999999999999865432111 0010111111223334455678999999877665554 567899
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
++++|+|+++..++......+..... ....|+++|+||.|+...... .......++...+...+++
T Consensus 322 ~vi~v~d~~~~~s~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 387 (423)
T 4C0K_A 322 VACLVYDSSNPRSFEYVARIYIKYYA--ESKIPVMIVGTKCDMDERRQD------------YLMQPSEFCDKYKLLPPHL 387 (423)
T ss_dssp EEEEEEESSCTTTHHHHHHHCCCCCT--TSSSCEEEEEECTTSCCCCCS------------SSSCHHHHHHHTTCCCCEE
T ss_pred EEEEEeeCCChHHHHHHHHHHHHHhc--cCCCCEEEEEeCCCCchhhcc------------cccCHHHHHHHcCCCCCEE
Confidence 99999999987776665444433332 246899999999999753211 0111222333333367889
Q sequence1 162 CSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~ 182 (184)
+|+++ |+.++++.+...+.
T Consensus 388 ~Sa~~--~v~~l~~~l~~~~~ 406 (423)
T 4C0K_A 388 FSLKT--NKKELYTKLATMAA 406 (423)
T ss_dssp CCTTS--CCCHHHHHHHHHHH
T ss_pred eeCCC--ChHHHHHHHHHHHc
Confidence 99998 88999988877654
##### No 262 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>5KSO_A Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GDP; 2.25A {Homo sapiens}
Probab=99.55 E-value=1.5e-18 Score=117.61 Aligned_cols=161 Identities=16% Similarity=0.170 Sum_probs=101.6 Template_Neff=11.600
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF--EN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDT 80 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~--~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 80 (184)
......+|+++|.+++|||+|++++.............. .. ........+....+.+||++|...+.. ++..+
T Consensus 4 ~~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~----~~~~~ 79 (190)
T 5KSO_A 4 TQRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESEFLTE----AEIIC 79 (190)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHTTCCHHHHHHCCCSSCCSEEEEEEEETTEEEEEEEEEECCCSCCCH----HHHCS
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhCCCCCCccccceeeeeeEEEEEEEcCCcEEEEEEEeCCChHHHHH----HhccC
Confidence 345678999999999999999999987654322111100 00 011122233456778999998764432 44678
Q sequence1 81 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGY 159 (184)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 159 (184)
|++++|+|.++..++......+...... ...|+++++||.|+....... ......++...+. ..+
T Consensus 80 d~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~~k~D~~~~~~~~------------~~~~~~~~~~~~~~~~~ 145 (190)
T 5KSO_A 80 DVVCLVYDVSNPKSFEYCARIFKQHFMD--SRIPCLIVAAKSDLHEVKQEY------------SISPTDFCRKHKMPPPQ 145 (190)
T ss_dssp SEEEEEEETTCTTHHHHHHHHHHHHTTT--SCCCEEEEEECTTSCCCCCSS------------SSCHHHHHHHTTCCCCE
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhC--CCCCEEEEEecccCCcccCCC------------HHHHHHHHHHhCCCccE
Confidence 9999999999877666654333322222 478999999999987632110 0111122222221 234
Q sequence1 160 MECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 160 ~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
+.+|++++.++.++++++.+.+.
T Consensus 146 ~~~s~~~~~~i~~~~~~l~~~~~ 168 (190)
T 5KSO_A 146 AFTCNTADAPSKDIFVKLTTMAM 168 (190)
T ss_dssp ECCCCCSSSCCCHHHHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHHHHHHc
Confidence 88999999999999998887654
##### No 263 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2WJG_A FERROUS IRON TRANSPORT PROTEIN B; MEMBRANE G-PROTEINS, FERROUS IRON TRANSPORT; HET: GDP; 2.2A {METHANOCALDOCOCCUS JANNASCHII}
Probab=99.55 E-value=1.5e-18 Score=117.59 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=97.6 Template_Neff=11.300
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLS 76 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~ 76 (184)
++..+.++++++|.+|+|||||++++..........+..... ............+.+||++|...+.. .+..+
T Consensus 2 ~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (188)
T 2WJG_A 2 GSHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVE-KKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDY 80 (188)
T ss_dssp CCCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCE-EEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCccce-eEeceEEECCEEEEEEeCCCccccChHHHHHHHHHHH
Confidence 455677999999999999999999998765432222111111 11111122235688999999764432 22222
Q sequence1 77 Y--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI 154 (184)
Q Consensus 77 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
. ..++++++++|..+....... ...+.. ...|+++|+||.|+......... ...++...
T Consensus 81 ~~~~~~~~ii~v~d~~~~~~~~~~----~~~~~~--~~~~~i~v~~k~D~~~~~~~~~~-------------~~~~~~~~ 141 (188)
T 2WJG_A 81 IINEKPDLVVNIVDATALERNLYL----TLQLME--MGANLLLALNKMDLAKSLGIEID-------------VDKLEKIL 141 (188)
T ss_dssp HHHHCCSEEEEEEEGGGHHHHHHH----HHHHHT--TTCCEEEEEECHHHHHHTTCCCC-------------HHHHHHHH
T ss_pred HhhCCCCEEEEEeecccchhHHHH----HHHHHH--cCCCEEEEeehHHhCCHHHHHHH-------------HHHHHHHh
Confidence 2 346788999888765433222 222211 25789999999999764321110 11112222
Q sequence1 155 GAFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 155 ~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
+ ..++.+|+.++.|+.+++.++.+.+.
T Consensus 142 ~-~~~~~~s~~~~~~~~~~~~~i~~~~~ 168 (188)
T 2WJG_A 142 G-VKVVPLSAAKKMGIEELKKAISIAVK 168 (188)
T ss_dssp T-SCEEECBGGGTBSHHHHHHHHHHHHT
T ss_pred C-CCEEEeecCCCCCHHHHHHHHHHHHH
Confidence 2 57899999999999999999887764
##### No 264 #####
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>5KU1_A Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GDP; 2.501A {Homo sapiens}
Probab=99.55 E-value=1.6e-18 Score=131.59 Aligned_cols=160 Identities=16% Similarity=0.198 Sum_probs=101.3 Template_Neff=10.900
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-N-Y-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~-~-~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
.....+|+++|.+++|||+|++++....+.......... . . ...+...+....+.+||++|++.+.. ++..+|
T Consensus 239 ~~~~~~i~i~G~~~~GKt~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~----~~~~~d 314 (424)
T 5KU1_A 239 QRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESEFLTE----AEIICD 314 (424)
T ss_dssp CCSEEEEEEECCTTSSHHHHHHHHTTCCHHHHTTSCGGGCCSEEEEEEEETTEEEEEEEEEECCCC--------GGGCCS
T ss_pred CCeEEEEEEEcCCCCChHHHHHHHhCCccccccccccccCceEEEEEEEECCEEEEEEEEEcCcchhhHH----HHhhCC
Confidence 456789999999999999999999877654322111110 0 0 11222334456788999999765442 456799
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYM 160 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (184)
++++|+|+++..++......+...... ...|+++|+||+|+...... .......++...+. ..++
T Consensus 315 ~vi~v~d~~~~~s~~~~~~~~~~~~~~--~~~pvivv~nk~D~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 380 (424)
T 5KU1_A 315 VVCLVYDVSNPKSFEYCARIFKQHFMD--SRIPCLIVAAKSDLHEVKQE------------YSISPTDFCRKHKMPPPQA 380 (424)
T ss_dssp EEEEEEETTCTTTHHHHHHHCCCCCTT--CSSCEEEEEECTTSCCCCCC------------SSSCHHHHHHHTTCCCCEE
T ss_pred EEEEEecCCChHHHHHHHHHHHHhccc--CCCCEEEEEECCCchhhhhh------------ccCCHHHHHHHcCCCCCee
Confidence 999999999876665553333222221 46899999999998763211 01111222222221 2356
Q sequence1 161 ECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
.+|++++.|+.++|.++.+.++
T Consensus 381 ~~sa~~~~~i~~~~~~l~~~~~ 402 (424)
T 5KU1_A 381 FTCNTADAPSKDIFVKLTTMAM 402 (424)
T ss_dssp CCSCCSSSCCCHHHHHHHHHHH
T ss_pred eecCCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999888764
##### No 265 #####
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>4NON_A Ferrous iron uptake transporter protein; G protein, iron transport, GTPase; HET: GDP; 2.5A {Streptococcus thermophilus}
Probab=99.55 E-value=1.6e-18 Score=123.82 Aligned_cols=151 Identities=17% Similarity=0.216 Sum_probs=92.6 Template_Neff=9.700
Q sequence1 9 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLSY--PDT 80 (184)
Q Consensus 9 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~~ 80 (184)
.+|+++|.+++|||||++++.+........+...... ...... ....+.+||+||...... ....+. ..+
T Consensus 2 ~~i~lvG~~~~GKStl~n~l~~~~~~~~~~~g~t~~~-~~~~~~-~~~~~~l~D~pG~~~~~~~~~~e~~~~~~~~~~~~ 79 (260)
T 4NON_A 2 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER-KSGLVK-KNKDLEIQDLPGIYSMSPYSPEEKVARDYLLSQRA 79 (260)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSCCEE-EEEEET-TEEEEEEEECCCCSSCCSSSHHHHHHHHHHHTTCC
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCCCcCCCCCceeee-EEEEEe-eCCcEEEEeCCCCccCCCCCHHHHHHHHHHHhCCC
Confidence 5799999999999999999987654221111111111 011111 234688999999764432 123333 568
Q sequence1 81 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160 (184)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
|++++|+|.++....... ...+.. ...|+++|+||+|+......... ...+....+ .+++
T Consensus 80 d~ii~VvDas~~~~~~~l----~~~l~~--~~~p~ilvlNk~D~~~~~~~~~~-------------~~~l~~~~~-~~v~ 139 (260)
T 4NON_A 80 DSILNVVDATNLERNLYL----TTQLIE--TGIPVTIALNMIDVLDGQGKKIN-------------VDKLSYHLG-VPVV 139 (260)
T ss_dssp SEEEEEEEGGGHHHHHHH----HHHHHH--TSSCEEEEEECHHHHHTTTCCBC-------------HHHHHHHHT-SCEE
T ss_pred CEEEEEEeCCchHHHHHH----HHHHHH--hCCCEEEEEecHHHhcccccccC-------------HHHHHHHhC-CCEE
Confidence 999999999875433222 111211 35899999999999864221110 001111222 5788
Q sequence1 161 ECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~ 181 (184)
.+|+.++.|++++++.+...+
T Consensus 140 ~~sa~~~~gi~~l~~~l~~~~ 160 (260)
T 4NON_A 140 ATSSLKQTGVDQVVKKAAHTT 160 (260)
T ss_dssp ECBTTTTBSHHHHHHHHHHSS
T ss_pred EeECCCCCCHHHHHHHHHHhc
Confidence 999999999999998877654
##### No 266 #####
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>2ZEJ_B Leucine-rich repeat kinase 2 (E.C.2.7.11.1); Parkinson's Disease, LRRK2, ROC, GTPase; HET: GDP; 2.0A {Homo sapiens}
Probab=99.55 E-value=1.6e-18 Score=115.75 Aligned_cols=169 Identities=21% Similarity=0.319 Sum_probs=97.7 Template_Neff=12.700
Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYV--PTVFEN-YVADIEV---DGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~--~t~~~~-~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
.++|+++|+.++|||||++++.......... ++.... ....... ......+.+||++|+..+...+..+...++
T Consensus 2 ~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 81 (184)
T 2ZEJ_B 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEEECTTSSHHHHHHHHHCC-------CCSSCSEEEEEEEC---------CEEEEEEECSHHHHHHTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCccccCcccCCCceeEeeeeeEEecCCCCeEEEEEEecCCCccccccccccccCCe
Confidence 5789999999999999999998765432111 111010 0111111 113467899999998877777778888999
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
++++|+++++..........+...+.......|+++|+||.|............+... .............++.
T Consensus 82 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~D~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 155 (184)
T 2ZEJ_B 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITK------ELLNKRGFPAIRDYHF 155 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGSCTHHHHHHHHHHHH------HTTTCTTSCEEEEEEE
T ss_pred EEEEEEeCCCChhHHHhHHHHHHHHHHhcCCCCEEEEEecCCCCCHHHHHHHHHHHHH------HHHHHcCCCCcceeEe
Confidence 9999999987543222222333333222346899999999998764322111111000 0000011111244678
Q sequence1 162 CSAKTKD-GVREVFEMATRAAL 182 (184)
Q Consensus 162 ~s~~~~~-~i~~~~~~~~~~~~ 182 (184)
+|+..+. +++++++++.+.+.
T Consensus 156 ~s~~~~~~~i~~l~~~i~~~~~ 177 (184)
T 2ZEJ_B 156 VNATEESDALAKLRKTIINESL 177 (184)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHH
T ss_pred eecCCCcHHHHHHHHHHHHHHh
Confidence 8888877 89999888776653
##### No 267 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2ZEJ_A Leucine-rich repeat kinase 2 (E.C.2.7.11.1); Parkinson's Disease, LRRK2, ROC, GTPase; HET: MSE, GDP; 2.0A {Homo sapiens}
Probab=99.55 E-value=1.8e-18 Score=115.26 Aligned_cols=168 Identities=21% Similarity=0.310 Sum_probs=96.9 Template_Neff=12.900
Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENY-VADIEV---DGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~--~~t~~~~~-~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
.++|+++|+.++|||||++++......... .++..... ...... ......+.+||+||+..+...+..++..++
T Consensus 2 ~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 81 (184)
T 2ZEJ_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcccccCccCCCceeeEeeEEEEecCCCCeEEEEEEEcCCCccchhcccceecCCE
Confidence 578999999999999999999876543211 11111110 111111 112457889999998888777778888999
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
++++|+++....+.......+...+.......|+++++||.|................ .............++.
T Consensus 82 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~k~D~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 155 (184)
T 2ZEJ_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITK------ELLNKRGFPAIRDYHF 155 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHCCC------CCTTCTTSCEEEEEEE
T ss_pred EEEEEEeCCCChHHHHHHHHHHHHHHHhcCCCCEEEEEecccCCcHHHHHHHHHHHHH------HHHHHcCCCceeeeEE
Confidence 9999999987543222222333333222246889999999998764321111110000 0000001111245678
Q sequence1 162 CSAKTKD-GVREVFEMATRAA 181 (184)
Q Consensus 162 ~s~~~~~-~i~~~~~~~~~~~ 181 (184)
+|+..+. ++++++..+.+.+
T Consensus 156 ~s~~~~~~~~~~l~~~i~~~~ 176 (184)
T 2ZEJ_A 156 VNATEESDALAKLRKTIINES 176 (184)
T ss_dssp CCTTSCCHHHHHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHHHHH
Confidence 8999886 8999888776654
##### No 268 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2WJH_B FERROUS IRON TRANSPORT PROTEIN B; METAL TRANSPORT, MEMBRANE G-PROTEINS, FERROUS; HET: GDP, FLC; 2.1A {METHANOCALDOCOCCUS JANNASCHII}
Probab=99.55 E-value=1.9e-18 Score=114.61 Aligned_cols=156 Identities=14% Similarity=0.130 Sum_probs=95.4 Template_Neff=11.700
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------LRPLSY--P 78 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~ 78 (184)
+.++|+++|++++|||+|++++..........++...... ..........+.+||++|...... ....+. .
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T 2WJH_B 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKK-EGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHSCSCCEEEECTTSCSEEE-EEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHS
T ss_pred CCeeEEEECCCCCCHHHHHHHHhCCCCcccCCCCccceee-EEEEEECCeEEEEEECCCccccCccchhHHHHHHHHHhc
Confidence 4689999999999999999999876544322222111111 111112234688999999754321 222222 2
Q sequence1 79 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFG 158 (184)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
.++++++++|......... +...+.. ...|+++|+||.|+......... ...++...+ .+
T Consensus 81 ~~~~v~~v~d~~~~~~~~~----~~~~~~~--~~~~~i~v~~k~D~~~~~~~~~~-------------~~~l~~~~~-~~ 140 (166)
T 2WJH_B 81 KPDLVVNIVDATALERNLY----LTLQLME--MGANLLLALNKMDLAKSLGIEID-------------VDKLEKILG-VK 140 (166)
T ss_dssp CCSEEEEEEEGGGHHHHHH----HHHHHHH--TTCCEEEEEECHHHHHHTTCCCC-------------HHHHHHHHS-CC
T ss_pred CCCEEEEEEehhHhHHHHH----HHHHHHH--cCCCEEEEEEcHHHchhccchhc-------------HHHHHHHHC-CE
Confidence 4678899988876543222 2222211 25789999999999764321110 111122222 57
Q sequence1 159 YMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 159 ~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
++.+|+.++.++.+++.++.+.+.+
T Consensus 141 ~~~~s~~~~~~v~~~~~~l~~~~~~ 165 (166)
T 2WJH_B 141 VVPLSAAKKMGIEELKKAISIAVKD 165 (166)
T ss_dssp EEECBTTTTBCHHHHHHHHHHHHSC
T ss_pred EEEcccccccCHHHHHHHHHHHHhc
Confidence 8899999999999999988877643
##### No 269 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1EGA_B GTP-BINDING PROTEIN ERA; ERA, GTPASE, RNA-BINDING, RAS-LIKE, HYDROLASE; HET: SO4; 2.4A {Escherichia coli} SCOP: c.37.1.8, d.52.3.1
Probab=99.55 E-value=1.9e-18 Score=125.73 Aligned_cols=162 Identities=15% Similarity=0.081 Sum_probs=96.3 Template_Neff=10.500
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY---------DRLR 73 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~ 73 (184)
+...+..+|+++|.+|+|||||++++.+...........................+.+||+||.... ....
T Consensus 3 ~~~~~~~~V~viG~~~~GKStlin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~ 82 (301)
T 1EGA_B 3 IDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAA 82 (301)
T ss_dssp -CCCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCCSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred CccccceEEEEECCCCCCHHHHHHHHhCCcccccCCCCCCccceEEEEEecCCeEEEEEeCCCCCchHHHHHHHHHHHHH
Confidence 3456788999999999999999999987654322211111111111111223467899999996321 1122
Q sequence1 74 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 153 (184)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
..++..+|++++++|.+..... . ..+...+.. ...|+++|+||+|+......... ........
T Consensus 83 ~~~~~~~d~vi~vvd~~~~~~~--~-~~~l~~l~~--~~~p~ilV~nK~Dl~~~~~~~~~------------~~~~~~~~ 145 (301)
T 1EGA_B 83 SSSIGDVELVIFVVEGTRWTPD--D-EMVLNKLRE--GKAPVILAVNKVDNVQEKADLLP------------HLQFLASQ 145 (301)
T ss_dssp TSCCCCEEEEEEEEETTCCCHH--H-HHHHHHHHS--SSSCEEEEEESGGGCSCHHHHHH------------HHHHHTTT
T ss_pred HHhhcCCCEEEEEEeCCCCCCc--h-HHHHHHHHc--CCCCEEEEEechhccCchhhhHH------------HHHHHHhc
Confidence 2344678999999988753211 1 222222222 35789999999999864311000 00001111
Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
.....++++||+++.|+++++.++.+.+
T Consensus 146 ~~~~~~~~vSa~~~~gi~~l~~~l~~~~ 173 (301)
T 1EGA_B 146 MNFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp SCCSEEEEECTTTTTTHHHHHHHHHHTC
T ss_pred CCcccEEEeecCcCCCHHHHHHHHHHhC
Confidence 2235688999999999999998876654
##### No 270 #####
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>3IEU_A GTP-binding protein era; ERA, GTPase, KH domain, GDP; HET: GDP, SO4; 2.8A {Escherichia coli K-12}
Probab=99.55 E-value=1.9e-18 Score=125.73 Aligned_cols=162 Identities=15% Similarity=0.081 Sum_probs=96.3 Template_Neff=10.500
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY---------DRLR 73 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~ 73 (184)
+...+..+|+++|.+|+|||||++++.+...........................+.+||+||.... ....
T Consensus 3 ~~~~~~~~V~viG~~~~GKStlin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~ 82 (301)
T 3IEU_A 3 IDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAA 82 (301)
T ss_dssp -CCCEEEEEEEECSTTSSHHHHHHHHHCCSEEEECTTCCCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred CccccceEEEEECCCCCCHHHHHHHHhCCcccccCCCCCCccceEEEEEecCCeEEEEEeCCCCCchHHHHHHHHHHHHH
Confidence 3456788999999999999999999987654322211111111111111223467899999996321 1122
Q sequence1 74 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 153 (184)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
..++..+|++++++|.+..... . ..+...+.. ...|+++|+||+|+......... ........
T Consensus 83 ~~~~~~~d~vi~vvd~~~~~~~--~-~~~l~~l~~--~~~p~ilV~nK~Dl~~~~~~~~~------------~~~~~~~~ 145 (301)
T 3IEU_A 83 SSSIGDVELVIFVVEGTRWTPD--D-EMVLNKLRE--GKAPVILAVNKVDNVQEKADLLP------------HLQFLASQ 145 (301)
T ss_dssp TSCCCCEEEEEEEEETTCCCHH--H-HHHHHHHHT--SSSCEEEEEECGGGCSSTTTHHH------------HHHHHHTS
T ss_pred HHhhcCCCEEEEEEeCCCCCCc--h-HHHHHHHHc--CCCCEEEEEechhccCchhhhHH------------HHHHHHhc
Confidence 2344678999999988753211 1 222222222 35789999999999864311000 00001111
Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
.....++++||+++.|+++++.++.+.+
T Consensus 146 ~~~~~~~~vSa~~~~gi~~l~~~l~~~~ 173 (301)
T 3IEU_A 146 MNFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp SCCSEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred CCcccEEEeecCcCCCHHHHHHHHHHhC
Confidence 2235688999999999999998876654
##### No 271 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3LVQ_E Arf-GAP with SH3 domain, ANK; Arf, GAP, GDP, ASAP3, UPLC1; HET: GDP; 3.38A {Homo sapiens}
Probab=99.54 E-value=2.5e-18 Score=132.64 Aligned_cols=163 Identities=20% Similarity=0.262 Sum_probs=109.0 Template_Neff=11.300
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
....+|+++|..++|||+|++++....+... .++.... . .........+.+||++|++.+...+..++..+|++++
T Consensus 320 ~~~~~i~v~G~~~~GKs~l~~~~~~~~~~~~-~~t~~~~-~--~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~ad~vll 395 (497)
T 3LVQ_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFN-V--ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEE-E--EEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ccceEEEEeCCCCCCHHHHHHHHhCCCCCCC-CCeeceE-E--EEEEeeceEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 4567999999999999999999886654321 1111111 1 1112234578899999998887778888889999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 164 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (184)
|+|+++..++......+....... ....|+++|+||.|+........ .. ............ ..++++|+
T Consensus 396 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilv~nK~D~~~~~~~~~-~~--------~~~~~~~~~~~~-~~~~~~s~ 465 (497)
T 3LVQ_E 396 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE-IQ--------EKLGLTRIRDRN-WYVQPSCA 465 (497)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHH-HH--------HHTTCTTCCSSC-EEEEECBT
T ss_pred EEECCChHhHHHHHHHHHHHHHHcCCCCCCEEEEEECCCCCCCCCHHH-HH--------HHHHHHHHHHcC-CCEEECcC
Confidence 999998776766655444443322 12689999999999876321111 00 011111111112 56889999
Q sequence1 165 KTKDGVREVFEMATRAAL 182 (184)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~ 182 (184)
+++.|+.++|..+.+.+.
T Consensus 466 ~~~~~v~~l~~~i~~~~~ 483 (497)
T 3LVQ_E 466 TSGDGLYEGLTWLTSNYK 483 (497)
T ss_dssp TTTBTHHHHHHHHHHHCC
T ss_pred CcCCCHHHHHHHHHHHHH
Confidence 999999999998887654
##### No 272 #####
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>3R9X_A GTPase Era, Ribosomal RNA small; GTPase, KH domain, ribosome, biogenesis; HET: MRD, GNP; 2.8A {Aquifex aeolicus}
Probab=99.54 E-value=2.5e-18 Score=125.39 Aligned_cols=164 Identities=18% Similarity=0.131 Sum_probs=96.8 Template_Neff=10.600
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT-VFENYVADIEVDGKQVELALWDTAGLEDY----------DR 71 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~ 71 (184)
+......+|+++|.+|+|||||++++.+.......... +................+.+||+||.... ..
T Consensus 4 ~~~~~~~~v~iiG~~~~GKStlin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 83 (307)
T 3R9X_A 4 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE 83 (307)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred cccccCeEEEEEcCCCCCHHHHHHHHhCCCccccCCCCCCccceEEEEEEccCCEEEEEEECCCCCChhhccHHHHHHHH
Confidence 45567789999999999999999999876543221111 11111111111113457889999997542 22
Q sequence1 72 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA 151 (184)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (184)
.....+..+|++++|+|+++..+.... ..+..... ....|+++|+||+|+........... ....
T Consensus 84 ~~~~~~~~~d~vl~VvD~~~~~~~~~~-~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~------------~~l~ 148 (307)
T 3R9X_A 84 IAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIK--PLNKPVIVVINKIDKIGPAKNVLPLI------------DEIH 148 (307)
T ss_dssp HHHHHHHHCSEEEEEEETTTCSCHHHH-HHCCCCCG--GGCCCEEEEEECGGGSSSGGGGHHHH------------HHHH
T ss_pred HHHHHHccCCEEEEEEECCCCCCHHHH-HHHHHHHH--HhCCCEEEEEECcccCCcHHHHHHHH------------HHHH
Confidence 333455678999999999875433222 11111111 12689999999999986431110000 0000
Q sequence1 152 NRI-GAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 152 ~~~-~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
... ....++.+||+++.|+.+++.++...+
T Consensus 149 ~~~~~~~~i~~iSa~~~~~i~~l~~~i~~~~ 179 (307)
T 3R9X_A 149 KKHPELTEIVPISALKGANLDELVKTILKYL 179 (307)
T ss_dssp HHCTTCCCEEECCTTTCTTHHHHHHHHHTTC
T ss_pred HHcCCCCcEEEeeCCCCCCHHHHHHHHHHhC
Confidence 111 125788999999999999988776654
##### No 273 #####
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>5M04_A GTPase ObgE/CgtA (E.C.3.6.5.-); GTPase, ObgE, CgtA, hydrolase; HET: GDP; 1.85A {Escherichia coli DH5[alpha]}
Probab=99.54 E-value=2.6e-18 Score=128.06 Aligned_cols=161 Identities=19% Similarity=0.209 Sum_probs=98.1 Template_Neff=8.600
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-TVFENYVADIEVDGKQVELALWDTAGLEDY-------DRLRPLSYP 78 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~ 78 (184)
...+|+++|.+++|||||++++..........+ ++.......+.. .....+.+||+||.... ...+..++.
T Consensus 178 ~~~~V~lvG~~~aGKStLl~~l~~~~~~~~~~~~tt~~~~~~~~~~-~~~~~i~i~D~pG~~~~~~~~~~l~~~~l~~l~ 256 (360)
T 5M04_A 178 LLADVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRM-DNEKSFVVADIPGLIEGAAEGAGLGIRFLKHLE 256 (360)
T ss_dssp CCCSEEEECCTTSSHHHHHHHHCSBCCEEESCSCSSSCCCEEEEEE-ETTEEEEEEEHHHHHTTSSSCTHHHHHHHHTGG
T ss_pred hcccEEEEcCCCCCHHHHHHHHHcCCCcccCCCCCCccCeEEEEEe-cCCCeEEEeccCCcccchhcCcchHHHHHHHHh
Confidence 346899999999999999999986543221111 111111111111 12457899999996432 223445567
Q sequence1 79 DTDVILMCFSIDSPD---SLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN 152 (184)
Q Consensus 79 ~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~---~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
.++++++|+|+++.. .+... ..+...+.... ...|+++|+||+|+.......... ..++.
T Consensus 257 ~~d~il~VvD~~~~~~~~~~~~~-~~~~~~L~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~-------------~~l~~ 322 (360)
T 5M04_A 257 RCRVLLHLIDIDPIDGTDPVENA-RIIISELEKYSQDLATKPRWLVFNKIDLLDKVEAEEKA-------------KAIAE 322 (360)
T ss_dssp GCCEEEEEEESSCTTSCCHHHHH-HHHHHHHHHHCHHHHTSCEEEEEECGGGSCHHHHHHHH-------------HHHHH
T ss_pred hCCEEEEEEECCCCCCCCHHHHH-HHHHHHHHHhchhhcCCCEEEEEeCcccCCHHHHHHHH-------------HHHHH
Confidence 899999999998643 33332 22333332221 258999999999997642211110 01111
Q sequence1 153 RIG-AFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 153 ~~~-~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
... ...++++||+++.++.+++.++.+.+.
T Consensus 323 ~l~~~~~i~~vSa~~g~gi~~L~~~i~~~l~ 353 (360)
T 5M04_A 323 ALGWEDKYYLISAASGLGVKDLCWDVMTFII 353 (360)
T ss_dssp HTTCCSCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HhCCCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 111 146889999999999999998887654
##### No 274 #####
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>4ARZ_B GTP-BINDING PROTEIN GTR1, GTP-BINDING PROTEIN; HYDROLASE, GTPASE, CELL GROWTH; HET: GTP, GDP; 3.1A {SACCHAROMYCES CEREVISIAE}
Probab=99.54 E-value=2.6e-18 Score=127.29 Aligned_cols=173 Identities=13% Similarity=0.149 Sum_probs=103.1 Template_Neff=9.100
Q sequence1 2 AMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL---RPL 75 (184)
Q Consensus 2 ~~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---~~~ 75 (184)
.+.....++|+++|..++||||+++++.+...+... .++.... . ... .....+.+||+||+..+... +..
T Consensus 3 ~~~~~~~~kIll~G~~~sGKSSli~~l~~~~~~~~~~~~~~T~~~~-~--~~~-~~~~~~~i~D~pG~~~~~~~~~~~~~ 78 (341)
T 4ARZ_B 3 LEATDSKAMVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPS-L--EHF-STLIDLAVMELPGQLNYFEPSYDSER 78 (341)
T ss_dssp --CCCBSCCCEEEEETTSSHHHHHHHHHHHTHHHHHCCCCCTCCSG-G--GCS-SBSCCCEEEEECSCSSSCCCCHHHHH
T ss_pred CccccCCceEEEECCCCCCHHHHHHHHHhcCCcccccccCCCCCce-e--eec-cccCeEEEEeCCCCcccCCCccCHHH
Confidence 345677899999999999999999999876543221 1111111 0 011 12257899999998877655 666
Q sequence1 76 SYPDTDVILMCFSIDSP--DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 153 (184)
Q Consensus 76 ~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
++..++++++|+|+.+. ..+..... +........+..|+++++||.|+................. ..........
T Consensus 79 ~~~~~daiI~ViD~~~~~~~~~~~l~~-~i~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~i~~~~--~~~l~~~~~~ 155 (341)
T 4ARZ_B 79 LFKSVGALVYVIDSQDEYINAITNLAM-IIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRT--GEELLELGLD 155 (341)
T ss_dssp HHHHCSEEEEEEETTSCCHHHHHHHHH-HHHHHHHHSCSCEEEEEEECCTTCCHHHHHHHHHHHHHHH--HTHHHHTTCC
T ss_pred HHhccCEEEEEEcCCCchHHHHHHHHH-HHHHHHHHCCCCcEEEEEeccCCCCHhhHHHHHHHHHHHH--HHHHHHcCCC
Confidence 78899999999999863 22222211 2222222235789999999999976432111111100000 0000000001
Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
.....++.+|+.++ ++.++|+.+++.++
T Consensus 156 ~~~i~~~~tS~~d~-si~eafs~vi~~li 183 (341)
T 4ARZ_B 156 GVQVSFYLTSIFDH-SIYEAFSRIVQKLI 183 (341)
T ss_dssp CCCEEEEECCTTSS-HHHHHHHHHHHHHC
T ss_pred CceEEEEEccCCch-hHHHHHHHHHHHHh
Confidence 12367889999999 99999988877654
##### No 275 #####
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>5KSZ_A Mitochondrial Rho GTPase 1 (E.C.3.6.5.-); Miro, GTPase, Parkin, Mitochondria, HYDROLASE; HET: GCP; 2.5A {Homo sapiens}
Probab=99.53 E-value=3e-18 Score=130.16 Aligned_cols=161 Identities=16% Similarity=0.168 Sum_probs=104.0 Template_Neff=10.800
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE---NYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 81 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (184)
....++|+++|.+++|||+|++++....+.......... .....+...+....+.+||++|++.+.. ++..++
T Consensus 239 ~~~~~~i~v~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~~~~d 314 (424)
T 5KSZ_A 239 QRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTVYVYGQEKYLLLHDISESEFLTE----AEIICD 314 (424)
T ss_dssp CCSEEEEEEECSTTSSHHHHHHHHTTCCHHHHTTCCGGGCCSEEEEEEEETTEEEEEEEEEECCCSCCCS----STTCSS
T ss_pred cCCcEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCccccceEEEEEEeCCCcEEEEEEEeCCchHHHHH----HHccCC
Confidence 345789999999999999999999876544321111110 0111223334456788999999764432 456899
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA-FGYM 160 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (184)
++++|+|+++..++......+...... ...|+++|+||+|+...... .......++...+. ..++
T Consensus 315 ~vi~v~d~~~~~s~~~~~~~~~~~~~~--~~~pvivv~nK~D~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 380 (424)
T 5KSZ_A 315 VVCLVYDVSNPKSFEYCARIFKQHFMD--SRIPCLIVAAKSDLHEVKQE------------YSISPTDFCRKHKMPPPQA 380 (424)
T ss_dssp EEEEEEETTCTTTHHHHHHHCCCCCTT--SSSCEEEEEECTTSCCCCCC------------SSSCHHHHHHHTTCCCCEE
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhC--CCCCEEEEEeCCCCCCccCC------------CHHHHHHHHHHhCCCCcEE
Confidence 999999999876666553333332221 46899999999998763211 01111222223222 2356
Q sequence1 161 ECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
.+|++++.|+.+++.++.+.+++
T Consensus 381 ~~Sa~~~~~i~~~~~~i~~~~~~ 403 (424)
T 5KSZ_A 381 FTCNTADAPSKDIFVKLTTMAMY 403 (424)
T ss_dssp CCSCSSSSCCCHHHHHHHHHHHC
T ss_pred EecCCcCCCHHHHHHHHHHHHhh
Confidence 89999999999999998887653
##### No 276 #####
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>3C5H_A Glucocorticoid receptor DNA-binding factor 1; ras, gtpase, glucorticoid receptor, Structural; HET: GNP; 1.8A {Homo sapiens}
Probab=99.53 E-value=3.2e-18 Score=121.96 Aligned_cols=89 Identities=16% Similarity=0.153 Sum_probs=58.0 Template_Neff=9.900
Q sequence1 80 TDVILMCFSIDSP--DSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184)
Q Consensus 80 ~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
+|++++|+|+++. .++......+....... ....|+++|+||+|+....... ....+......
T Consensus 163 ~d~vi~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~--------------~~~~~~~~~~~ 228 (255)
T 3C5H_A 163 VDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIR--------------DAHTFALSKKN 228 (255)
T ss_dssp CCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHH--------------HHHHHHHTSSS
T ss_pred CcEEEEEEECCCcccCCHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCChhhHh--------------HHHHHHHHcCC
Confidence 8899999999987 66665544333333322 1368999999999998643211 11111112123
Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
..++.+|+.++.++.+++.++.+.+.
T Consensus 229 ~~~~~iSa~~~~gi~~l~~~i~~~~~ 254 (255)
T 3C5H_A 229 LQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 57889999999999999999887654
##### No 277 #####
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>2CJW_B GTP-BINDING PROTEIN GEM; G-PROTEIN, NUCLEOTIDE-BINDING, GTP-BINDING, SMALL GTPASE; HET: GDP, CAS; 2.1A {HOMO SAPIENS}
Probab=99.53 E-value=3.5e-18 Score=115.27 Aligned_cols=166 Identities=25% Similarity=0.287 Sum_probs=96.4 Template_Neff=12.400
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY-VP-TVFENYVADIEVDGKQVELALWDTAGLEDYD-RLRPLSYPDTD 81 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~ 81 (184)
.....+|+++|..++|||||++++......... .+ ............++....+.++|++|..... ..+..+...+|
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2CJW_B 3 GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp TCCEEEEEEEECTTSSHHHHHHHHHTC------------CCEEEEEEEETTEEEEEEEECCCCC-------CTTHHHHCS
T ss_pred CceeEEEEEECCCCCCHHHHHHHHhcCcccCCCCcccccceEEEEEEEeCCeEEEEEEEEccccCCCchhhHHHhcccCC
Confidence 346789999999999999999999864332111 11 1111112222223333445566665543222 23444556789
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
++++|+|+++..++......+....... ....|+++|+||.|+....... .......+... .+.++
T Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~------------~~~~~~~~~~~-~~~~~ 149 (192)
T 2CJW_B 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVS------------VSEGRACAVVF-DCKFI 149 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSC------------HHHHHHHHHHH-TCEEE
T ss_pred EEEEEEeCCChHhHHHHHHHHHHHHHhcCCCCCCEEEEEeCcccccceeec------------HHHHHHHHHHh-CCcEE
Confidence 9999999988666655544333332221 2368999999999997632110 01111111222 25788
Q sequence1 161 ECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
.+|++++.++.+++.++.+.+.+
T Consensus 150 ~~s~~~~~~i~~~~~~l~~~~~~ 172 (192)
T 2CJW_B 150 ETSAAVQHNVKELFEGIVRQVRL 172 (192)
T ss_dssp EEBTTTTBSHHHHHHHHHHHHHH
T ss_pred EeccccCCCHHHHHHHHHHHHHh
Confidence 99999999999999988877653
##### No 278 #####
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>5X4B_A GTPase Der; Ribosome biogenesis, Rossmann fold, GTPase; HET: GDP; 1.5A {Bacillus subtilis (strain 168)}
Probab=99.53 E-value=3.6e-18 Score=112.07 Aligned_cols=152 Identities=15% Similarity=0.159 Sum_probs=91.1 Template_Neff=12.500
Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLE--------DYDRLRPLSYPD 79 (184)
Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~ 79 (184)
+.+++++|+.|+|||++++++.............................+.+||++|.. .....+..+...
T Consensus 2 ~~~i~v~G~~g~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 81 (162)
T 5X4B_A 2 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 81 (162)
T ss_dssp CSEEEEECCSSSSHHHHHHHHBSCC----------CCSCSEEEEEETTEEEEEEEGGGCCCCSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccCCCCCCCceeeEEEEEeecCceEEEEEECCCCCCCChHHHHHHHHHHHHHHhc
Confidence 568999999999999999999876543221111111111111122234578899999943 223334445677
Q sequence1 80 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 159 (184)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
++++++++|..+ .+......+...... ...|+++|+||.|+...... ...++.. ....+
T Consensus 82 ~~~~i~v~d~~~--~~~~~~~~~~~~~~~--~~~~~~~v~~k~d~~~~~~~----------------~~~~~~~-~~~~~ 140 (162)
T 5X4B_A 82 ADVIIFMVNGRE--GVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRAN----------------IYDFYSL-GFGEP 140 (162)
T ss_dssp CSEEEEEEETTT--CSCHHHHHHHHHHTT--CCSCEEEEEECCCSGGGGGG----------------GGGGGGG-SSSCE
T ss_pred CCEEEEEEeCCc--cchhHHHHHHHHHHH--cCCCEEEEEeccccHhHHHH----------------HHHHHHh-CCCCe
Confidence 899999988764 233332333333322 25889999999998642211 0011111 22568
Q sequence1 160 MECSAKTKDGVREVFEMATRA 180 (184)
Q Consensus 160 ~~~s~~~~~~i~~~~~~~~~~ 180 (184)
+++|+.++.++.+++.++.+.
T Consensus 141 ~~~s~~~~~~i~~~~~~l~~~ 161 (162)
T 5X4B_A 141 YPISGTHGLGLGDLLDAVAEH 161 (162)
T ss_dssp EECBTTTTBSHHHHHHHHHHT
T ss_pred EEeecccCCCHHHHHHHHHhh
Confidence 899999999999999988764
##### No 279 #####
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>6VP6_B Leucine-rich repeat serine/threonine-protein kinase 2; Kinase, GTPase, SIGNALING PROTEIN; HET: GDP, TPO; 3.47A {Homo sapiens}
Probab=99.53 E-value=3.9e-18 Score=144.12 Aligned_cols=124 Identities=25% Similarity=0.406 Sum_probs=0.0 Template_Neff=9.500
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV--YVPTVFENYV-ADIEVD---GKQVELALWDTAGLEDYDRLRPLS 76 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~--~~~t~~~~~~-~~~~~~---~~~~~~~i~D~~g~~~~~~~~~~~ 76 (184)
+...+..+|+++|.+++|||||++++....+... ..++....+. ...... ...+.+.+||++|++.+......+
T Consensus 3 ~~~~~~~kI~ivG~~~~GKSsLi~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 82 (1201)
T 6VP6_B 3 AVPYNRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHF 82 (1201)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHhcCCCcccccccCeeEEEEEEEEEEEcCCCCceEEEEEEEcCCCHHHHhhcHhh
Confidence 4556789999999999999999999987665432 1122211111 111111 223678999999988887777778
Q sequence1 77 YPDTDVILMCFSIDS-PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 127 (184)
Q Consensus 77 ~~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~ 127 (184)
+..+|++++|+|+++ ...+... ..+...+.......|+++|+||+|+...
T Consensus 83 ~~~~d~iIlV~D~s~~~~~~~~~-~~~~~~i~~~~~~~piilV~nK~Dl~~~ 133 (1201)
T 6VP6_B 83 MTQRALYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDE 133 (1201)
T ss_dssp ----------------------------------------------------
T ss_pred hccCCEEEEEEeCCCchHHHHHH-HHHHHHHHHhcCCCCEEEEEECCCCCCH
Confidence 889999999999998 3433333 3344433332346899999999999863
##### No 280 #####
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>1SUL_B Probable GTP-binding protein YsxC; GTP, GTPase, GTP-binding, HYDROLASE; 2.0A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.53 E-value=3.9e-18 Score=116.45 Aligned_cols=161 Identities=12% Similarity=0.118 Sum_probs=94.8 Template_Neff=11.000
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLE----------DYDRLRP 74 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~ 74 (184)
....++|+++|.+|+|||||++++..........+........... .....+.+||++|.. .+.....
T Consensus 20 ~~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1SUL_B 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--IINDELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp CSCCCEEEEEESCHHHHHHHHHHHTTCSSSCCCCCSTTCTTCEEEE--EETTTEEEEECCCSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHhcccccCCCCCCCCcceEEEEE--EECCeEEEEeCCCCCCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999998765433222211111111111 112367899999963 2222222
Q sequence1 75 LSY---PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA 151 (184)
Q Consensus 75 ~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (184)
.+. ..++++++++|.......... .+...+.. ...|+++|+||+|+............. ...+
T Consensus 98 ~~~~~~~~~~~ii~v~d~~~~~~~~~~--~~~~~~~~--~~~piiiv~~k~D~~~~~~~~~~~~~~---------~~~~- 163 (195)
T 1SUL_B 98 TYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVV---------RQTL- 163 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHH---------HHHH-
T ss_pred HHHhchhhccEEEEEEeCCCCCChhHH--HHHHHHHH--hCCCEEEEEecHhhCCcchHHHHHHHH---------HHHc-
Confidence 222 347789999888764332222 23333322 258999999999997643221111100 0000
Q sequence1 152 NRIGAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 152 ~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
.......++++|+.++.++.++|..+.+.+
T Consensus 164 ~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~ 193 (195)
T 1SUL_B 164 NIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCceEEEECCCccCHHHHHHHHHHHH
Confidence 111125789999999999999999887765
##### No 281 #####
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>1SVI_A GTP-binding protein YsxC; YsxC, ENGB, GTPase, GTP-binding protein; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.53 E-value=3.9e-18 Score=116.45 Aligned_cols=161 Identities=12% Similarity=0.118 Sum_probs=91.4 Template_Neff=11.000
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLE----------DYDRLRP 74 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~ 74 (184)
....++|+++|.+|+|||||++++..........+........... .....+.+||++|.. .+.....
T Consensus 20 ~~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1SVI_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--IINDELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEE--EETTTEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHhcccccCCCCCCCCcceEEEEE--EECCeEEEEeCCCCCCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999998765433222211111111111 112367899999963 2222222
Q sequence1 75 LSY---PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA 151 (184)
Q Consensus 75 ~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (184)
.+. ..++++++++|.......... .+...+.. ...|+++|+||+|+............. ...+
T Consensus 98 ~~~~~~~~~~~ii~v~d~~~~~~~~~~--~~~~~~~~--~~~piiiv~~k~D~~~~~~~~~~~~~~---------~~~~- 163 (195)
T 1SVI_A 98 TYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVV---------RQTL- 163 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHH---------HHHH-
T ss_pred HHHhchhhccEEEEEEeCCCCCChhHH--HHHHHHHH--hCCCEEEEEecHhhCCcchHHHHHHHH---------HHHc-
Confidence 222 347789999888764332222 23333322 258999999999997643221111100 0000
Q sequence1 152 NRIGAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 152 ~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
.......++++|+.++.++.++|..+.+.+
T Consensus 164 ~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~ 193 (195)
T 1SVI_A 164 NIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCceEEEECCCccCHHHHHHHHHHHH
Confidence 111125789999999999999999887765
##### No 282 #####
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>3J8G_X PROTEIN/RNA Complex; Ribosome assembly, EngA, Der, YphC; 5.0A {Escherichia coli K12}
Probab=99.53 E-value=4e-18 Score=131.75 Aligned_cols=163 Identities=20% Similarity=0.153 Sum_probs=98.3 Template_Neff=10.600
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRP---------- 74 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~---------- 74 (184)
....++|+++|.+|+|||||++++.+...........................+.+||++|.........
T Consensus 199 ~~~~~~i~iiG~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 278 (490)
T 3J8G_X 199 QSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKT 278 (490)
T ss_dssp TSSCCBEEEEECSSSCHHHHHHHHHCSSCCCCCCCCCCSSSSCCCEEEETTEEEECCSSSSSSCCSSCCCSSSSHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCceeccEEEEeEECCEEEEEEECCCccccCCcchHHHHHHHHHH
Confidence 4567899999999999999999998765432221111111111111222345688999999764432211
Q sequence1 75 -LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 153 (184)
Q Consensus 75 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
..+..+|++++|+|+++..+.... ..+..... ...|+++|+||+|+........ ..... ......
T Consensus 279 ~~~~~~~d~~llv~d~~~~~~~~~~-~~~~~~~~---~~~~vilv~nK~Dl~~~~~~~~-~~~~~---------~~~~~~ 344 (490)
T 3J8G_X 279 LQAIEDANVVMLVIDAREGISDQDL-SLLGFILN---SGRSLVIVVNKWDGLSQEVKEQ-VKETL---------DFRLGF 344 (490)
T ss_dssp HHHHHHCSEEEEEECSSSCSCHHHH-HHHHHHHH---HTSEEEEEEESCSSSCSSCSTH-HHHHH---------HHHHCC
T ss_pred HHHHHhCCEEEEEeecCCCCCHHHH-HHHHHHHH---cCCeEEEEEEcccCCCHHHHHH-HHHHH---------HHHhCC
Confidence 125678999999999875443332 22222221 3688999999999986431111 10000 000111
Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
.....++++||+++.|+.+++.++...+
T Consensus 345 ~~~~~~~~iSa~~~~~i~~l~~~l~~~~ 372 (490)
T 3J8G_X 345 IDFARVHFISALHGSGVGNLFESVREAY 372 (490)
T ss_dssp CSCCCCCEECTTTCSSHHHHHHHHHHHH
T ss_pred CCCCeEEEeccCCCCChHHHHHHHHHHH
Confidence 2235788999999999999998887665
##### No 283 #####
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>5DN8_A GTPase Der; GTP-binding protein, GDP, Complex, Structural; HET: GDP; 1.76A {Coxiella burnetii (strain RSA 493 / Nine Mile phase I)}
Probab=99.52 E-value=4.6e-18 Score=129.77 Aligned_cols=163 Identities=17% Similarity=0.136 Sum_probs=95.7 Template_Neff=11.000
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLR----------- 73 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----------- 73 (184)
.....+|+++|.+|+|||||++++.+...........................+.+||+||........
T Consensus 175 ~~~~~~i~viG~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 254 (446)
T 5DN8_A 175 KEVGIKIAMIGRPNVGKSTLINRLLGEERVIVYDQPGTTRDSIYIPFARNDENYTLIDTAGIRRRAKIQDYVEKFSMIKS 254 (446)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHTTSTTEEECC-------TTEEEEEETTEEEEEECTTCHHHHHHHC----CCCHHHH
T ss_pred cccCcEEEEEcCCCCChHHHHHHHhCCCeeEeeCCCCccccceEEEeEECCeEEEEEECCCcCCccccchHHHHHHHHHH
Confidence 356789999999999999999999876543221111101111111122233568899999965432211
Q sequence1 74 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 153 (184)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
..++..+|++++|+|.++..+.... ..+..... ...|+++|+||+|+........... ........
T Consensus 255 ~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~----------~~~~~~~~ 320 (446)
T 5DN8_A 255 LQAMHAADVVIFLLDARQGVTEQDL-RLLNRIVE---AGVSLIIAVNKWDGLNIEERDNVRN----------AIDRRMPF 320 (446)
T ss_dssp HHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH---HTCEEEEEEECCTTCCHHHHHHHHH----------HHHHHCGG
T ss_pred HHHHhhCCEEEEEccCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeCccCCCHHHHHHHHH----------HHHHhCCc
Confidence 1235678999999999875443322 22222221 3588999999999976432111000 00011111
Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
.....++++||+++.++.+++.++.+.+
T Consensus 321 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 348 (446)
T 5DN8_A 321 VDFARRYFISALHGTGVGKLFRAIQESY 348 (446)
T ss_dssp GTTSEEEECCTTTCTTTTHHHHHHHHHH
T ss_pred ccccceEecccCCCCCHHHHHHHHHHHH
Confidence 2235688899999999999998877654
##### No 284 #####
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>1LNZ_A SPO0B-associated GTP-binding protein; GTPase, Obg, stringent factor, stress; HET: G4P; 2.6A {Bacillus subtilis} SCOP: c.37.1.8, b.117.1.1
Probab=99.52 E-value=5e-18 Score=125.89 Aligned_cols=158 Identities=19% Similarity=0.231 Sum_probs=95.6 Template_Neff=9.200
Q sequence1 9 KKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGLED-------YDRLRPLSYPDT 80 (184)
Q Consensus 9 ~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~ 80 (184)
.+|+++|.+++|||||++++........ +..++.......+.. .....+.+||+||+.. +...+..++..+
T Consensus 159 ~~V~lvG~~~~GKSsLl~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~i~D~pG~~~~~~~~~~l~~~~l~~~~~~ 237 (342)
T 1LNZ_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVET-DDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEEC-SSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred eeEEEEecCCCCHHHHHHHHHcCCCcccCCccccccCcEEEEEc-CCCCeEEEEecCCCCcccccCCccHHHHHHHHhcC
Confidence 4899999999999999999986543211 111111111111111 1235788999999754 223344456788
Q sequence1 81 DVILMCFSIDSPDSLENIP--EKWTPEVKHF---CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIG 155 (184)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~---~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
+++++|+|+++..++.... ..+...+... ....|+++|+||+|+.......... ...+ . .
T Consensus 238 ~~li~VvD~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~------------~~~~-~--~ 302 (342)
T 1LNZ_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAF------------KEKL-T--D 302 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHH------------HHHC-C--S
T ss_pred CEEEEEEeCCCCCCCChHHHHHHHHHHHHHcCccccCCCEEEEEeCcCCCcHHHHHHHH------------HHHh-c--C
Confidence 9999999998754333221 1111222211 1248999999999997532110000 0000 0 1
Q sequence1 156 AFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 156 ~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
.+.++++||+++.++.+++.++.+.+.
T Consensus 303 ~~~~~~vSa~~g~gi~el~~~l~~~~~ 329 (342)
T 1LNZ_A 303 DYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp CCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHh
Confidence 256889999999999999998887664
##### No 285 #####
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>4CSU_9 50S RIBOSOMAL PROTEIN L28, 50S; (P)PPGPP, OBG, RIBOSOME ASSEMBLY, STRINGENT; 5.5A {ESCHERICHIA COLI}
Probab=99.52 E-value=5e-18 Score=127.94 Aligned_cols=161 Identities=19% Similarity=0.183 Sum_probs=97.4 Template_Neff=9.300
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDY-------DRLRPLSYP 78 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~ 78 (184)
...+|+++|.+++|||||+++++.........+... ......... .....+.+||+||.... ...+..++.
T Consensus 158 ~~~~V~lvG~~~aGKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~~~ 236 (390)
T 4CSU_9 158 LLADVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRM-DNEKSFVVADIPGLIEGAAEGAGLGIRFLKHLE 236 (390)
T ss_dssp STTSEEEECCTTCCHHHHHHHTCSSCCCBCCCSCSSCCCEEEEEEC-SSSCEEEEEESSSSCCCGGGSCSSSHHHHHHHH
T ss_pred ccccEEEecCCCCCHHHHHHHHHcCCCccCCCCCCCCcCceEEEEe-cCCceEEEEcCCCCccchHhccchHHHHHHHHh
Confidence 346899999999999999999987643221111111 111111111 12457899999996432 223445567
Q sequence1 79 DTDVILMCFSIDSPD---SLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN 152 (184)
Q Consensus 79 ~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~---~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
.++++++|+|++... .+... ..+...+..... ..|+++|+||+|+........... .+..
T Consensus 237 ~~d~il~VvD~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~nK~D~~~~~~~~e~~~-------------~l~~ 302 (390)
T 4CSU_9 237 RCRVLLHLIDIDPIDGTDPVENA-RIIISELEKYSQDLATKPRWLVFNKIDLLDKVEAEEKAK-------------AIAE 302 (390)
T ss_dssp TCSEEEEEEECSSCCSSCHHHHH-HHHHHHHHHHCHHHHHSSCCCEEECCSSSCSSHHHHHHH-------------HHHH
T ss_pred cCCEEEEEEeCCCCCCCCHHHHH-HHHHHHHHHhcHhhcCCcEEEEEECcccCCHHHHHHHHH-------------HHHH
Confidence 899999999998653 33332 233333322211 589999999999976421111111 0111
Q sequence1 153 RIG-AFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 153 ~~~-~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
... ...++.+|++++.++.+++.++.+.+.
T Consensus 303 ~~~~~~~~~~vSa~~~~gi~el~~~l~~~~~ 333 (390)
T 4CSU_9 303 ALGWEDKYYLISAASGLGVKDLCWDVMTFII 333 (390)
T ss_dssp HTCSSCCCEECSCCCCSSHHHHHHHHHHHHH
T ss_pred HhCCCCcEEEeecCCCCCHHHHHHHHHHHHH
Confidence 111 146889999999999999988877653
##### No 286 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>5U4V_A Rho GTPase-activating protein 5; GTPase, pseudoGTPase, G domain, Rho; 2.6A {Homo sapiens}
Probab=99.52 E-value=5.2e-18 Score=114.45 Aligned_cols=134 Identities=20% Similarity=0.240 Sum_probs=67.9 Template_Neff=9.800
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGL--EDYDRLRPLSYPDT 80 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~--~~~~~~~~~~~~~~ 80 (184)
......++|+++|..++||| +...+ ...... ..+..++..+.+.+||++|+ +.+...+..+ ..+
T Consensus 3 ~~~~~~~ki~vlG~~~vGKt-~~~~~-~~~~~~-----------~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~-~~a 68 (176)
T 5U4V_A 3 STNIDKVNLFILGKDGLAQE-LANEI-RTQSTD-----------DEYALDGKIYELDLRPVDAKSPYFLSQLWTAA-FKP 68 (176)
T ss_dssp ----CEEEEEEECSTTHHHH-HHHHH-HTTCBT-----------TBEEETTEEEEEEEEEECC----------------C
T ss_pred CCCcceEEEEEECCCcccHH-HHHHH-HHhcCC-----------CEEEECCEEEEEEEEEcCCCCchhhhhHHhhh-cCC
Confidence 34567799999999999999 33222 111111 11223445678899999998 5555545444 889
Q sequence1 81 DVILMCFSIDSPDSLENIPEKWTPEVKHF--------CPNVPIILV-GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA 151 (184)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--------~~~~~~~vv-~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (184)
+++++|+| ++.++.....++..+.... ....|+++| +||+|+...... .....+..++
T Consensus 69 ~~~i~v~d--~~~Sf~~~~~~~~~i~~~~~~~~~~~~~~~~p~vlV~gnK~Dl~~~~~~-----------v~~~~~~~~a 135 (176)
T 5U4V_A 69 HGCFCVFN--SIESLSFIGEFIGKIRTEASQIRKDKYMANLPFTLILANQRDSISKNLP-----------ILRHQGQQLA 135 (176)
T ss_dssp EEEEEEES--SHHHHHHHHHHHHHHHHHHHCC-----CTTCCEEEEEEC-------CHH-----------HHHHHHHHHH
T ss_pred CEEEEEec--CHHHHHHHHHHHHHHHHHhhHhhhhhhcCCCCEEEEEeecCCCCccccc-----------hHHHHHHHHH
Confidence 99999999 7777887755554443221 246788887 999998721111 1122233333
Q sequence1 152 NRIGAFGYMECSA 164 (184)
Q Consensus 152 ~~~~~~~~~~~s~ 164 (184)
..++ ..++++|+
T Consensus 136 ~~~~-~~~~e~Sa 147 (176)
T 5U4V_A 136 NKLQ-CPFVDVPA 147 (176)
T ss_dssp HHHT-CCEEEEC-
T ss_pred HHcC-CCEEEcCC
Confidence 4444 56888988
##### No 287 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6OJF_A Leucine-rich repeat serine/threonine-protein kinase 2; Parkinson's disease, LRRK2, GTPase, Dimer; HET: GDP; 1.6A {Homo sapiens}
Probab=99.52 E-value=5.2e-18 Score=116.48 Aligned_cols=169 Identities=21% Similarity=0.314 Sum_probs=100.9 Template_Neff=11.500
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENY-VADIEV---DGKQVELALWDTAGLEDYDRLRPLSY 77 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~--~~t~~~~~-~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~ 77 (184)
....+++|+++|.+++|||||++++......... .++..... ...... ......+.+||+||+..+...+..++
T Consensus 16 ~~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~ 95 (206)
T 6OJF_A 16 VPYNRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFM 95 (206)
T ss_dssp --CCSCEEEEESCTTSSHHHHHHHHTCSSSCSSCSSCSSCSEEEEEEEECCCSSSCCCEEEEEEEECSHHHHHTTSHHHH
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHhcCCccccCccCCccceEeEEeeceecCcCCCeEEEEEEecCCChhhhhcchhhc
Confidence 4567899999999999999999999876543211 11110000 111111 11245789999999888777777888
Q sequence1 78 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI--- 154 (184)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 154 (184)
..+|++++|+|.+...........+...+.......|+++++||.|+............. ........
T Consensus 96 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nk~D~~~~~~~~~~~~~~---------~~~~~~~~~~~ 166 (206)
T 6OJF_A 96 TQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEAQRAACMSKI---------TKELLNKRGFP 166 (206)
T ss_dssp HSSEEEEEEEEGGGCTHHHHTHHHHHHHHHHHCTTCCEEEEEECGGGCCHHHHHHHHHHH---------HHHTTTCTTSC
T ss_pred cCCeEEEEEEECCCChHHHHhHHHHHHHHHHhCCCCCEEEEEehhhcCcHHHHHHHHHHH---------HHHHHHhcCCC
Confidence 899999999999875422222223333332222468999999999998743221111100 00111111
Q sequence1 155 GAFGYMECSAKTKD-GVREVFEMATRAA 181 (184)
Q Consensus 155 ~~~~~~~~s~~~~~-~i~~~~~~~~~~~ 181 (184)
....++.+|+..+. ++.++++.+.+.+
T Consensus 167 ~~~~~~~~s~~~~~~~~~~l~~~i~~~~ 194 (206)
T 6OJF_A 167 AIRDYHFVNATEESDALAKLRKTIINES 194 (206)
T ss_dssp CEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred ccceeeEEecCCCCHHHHHHHHHHHHHH
Confidence 11345678888876 8888777665544
##### No 288 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6OJF_B Leucine-rich repeat serine/threonine-protein kinase 2; Parkinson's disease, LRRK2, GTPase, Dimer; HET: GDP; 1.6A {Homo sapiens}
Probab=99.52 E-value=5.2e-18 Score=116.48 Aligned_cols=169 Identities=21% Similarity=0.314 Sum_probs=100.9 Template_Neff=11.500
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENY-VADIEV---DGKQVELALWDTAGLEDYDRLRPLSY 77 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~--~~t~~~~~-~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~ 77 (184)
....+++|+++|.+++|||||++++......... .++..... ...... ......+.+||+||+..+...+..++
T Consensus 16 ~~~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~ 95 (206)
T 6OJF_B 16 VPYNRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFM 95 (206)
T ss_dssp --CCSCEEEEESSTTSSHHHHHHHHHCCTTCCCCCSSSSCSEEEEEEECCCSSCSCCCCEEEEEEECSHHHHHTTSHHHH
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHhcCCccccCccCCccceEeEEeeceecCcCCCeEEEEEEecCCChhhhhcchhhc
Confidence 4567899999999999999999999876543211 11110000 111111 11245789999999888777777888
Q sequence1 78 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI--- 154 (184)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 154 (184)
..+|++++|+|.+...........+...+.......|+++++||.|+............. ........
T Consensus 96 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nk~D~~~~~~~~~~~~~~---------~~~~~~~~~~~ 166 (206)
T 6OJF_B 96 TQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEAQRAACMSKI---------TKELLNKRGFP 166 (206)
T ss_dssp HHSEEEEEEEEGGGCTHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHH---------HHHTTTCTTSC
T ss_pred cCCeEEEEEEECCCChHHHHhHHHHHHHHHHhCCCCCEEEEEehhhcCcHHHHHHHHHHH---------HHHHHHhcCCC
Confidence 899999999999875422222223333332222468999999999998743221111100 00111111
Q sequence1 155 GAFGYMECSAKTKD-GVREVFEMATRAA 181 (184)
Q Consensus 155 ~~~~~~~~s~~~~~-~i~~~~~~~~~~~ 181 (184)
....++.+|+..+. ++.++++.+.+.+
T Consensus 167 ~~~~~~~~s~~~~~~~~~~l~~~i~~~~ 194 (206)
T 6OJF_B 167 AIRDYHFVNATEESDALAKLRKTIINES 194 (206)
T ss_dssp EEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred ccceeeEEecCCCCHHHHHHHHHHHHHH
Confidence 11345678888876 8888777665544
##### No 289 #####
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>3IEV_A GTP-binding protein era/RNA complex; ERA, GTPase, KH domain, anti-SD; HET: GNP; 1.9A {Aquifex aeolicus}
Probab=99.50 E-value=8.1e-18 Score=122.84 Aligned_cols=161 Identities=18% Similarity=0.142 Sum_probs=95.4 Template_Neff=10.600
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-TVFENYVADIEVDGKQVELALWDTAGLEDY----------DRLRP 74 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~~~~ 74 (184)
....+|+++|.+|+|||||++++.+......... .+................+.+||+||.... .....
T Consensus 8 ~~~~~v~i~G~~~~GKStlin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 87 (308)
T 3IEV_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred ccCeEEEEECCCCCCHHHHHHHHhCCCcceecCCCCCceeEEEEEecCCCCceEEEEECCCCCCccccchhhHHHHHHHH
Confidence 4567999999999999999999987654322111 111111111111113357889999997542 22233
Q sequence1 75 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI 154 (184)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
..+..+|++++|+|+++..+.... ..+..... ....|+++++||+|+........... . ......
T Consensus 88 ~~~~~ad~vllvvD~~~~~~~~~~-~~~~~~~~--~~~~p~ilv~nK~D~~~~~~~~~~~~---------~---~l~~~~ 152 (308)
T 3IEV_A 88 QSLEEADVILFMIDATEGWRPRDE-EIYQNFIK--PLNKPVIVVINKIDKIGPAKNVLPLI---------D---EIHKKH 152 (308)
T ss_dssp HHHHHCSEEEEEEETTTBSCHHHH-HHCCCCCG--GGCCCEEEEEECGGGSSSGGGGHHHH---------H---HHHHHC
T ss_pred HHHhhCCEEEEEEECCCCCCcchH-HHHHHHhh--hcCCCEEEEEEccccCCcchhHHHHH---------H---HHHHHC
Confidence 455678999999999865333222 11111121 12588999999999986431110000 0 000011
Q sequence1 155 -GAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 155 -~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
....++.+||+++.|+.+++..+...+
T Consensus 153 ~~~~~~~~iSa~~~~~i~~l~~~l~~~~ 180 (308)
T 3IEV_A 153 PELTEIVPISALKGANLDELVKTILKYL 180 (308)
T ss_dssp TTCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred CcccceeeccccCCCCHHHHHHHHHHhC
Confidence 125788999999999999988776654
##### No 290 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3R7W_B GTP-binding protein GTR1, GTP-binding protein; Rag GTPases, Gtr1p, Gtr2p, mTOR; HET: MSE, GNP; 2.773A {Saccharomyces cerevisiae}
Probab=99.50 E-value=8.3e-18 Score=124.17 Aligned_cols=165 Identities=13% Similarity=0.163 Sum_probs=97.8 Template_Neff=9.000
Q sequence1 10 KLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL---RPLSYPDTDVI 83 (184)
Q Consensus 10 ~i~i~G~~~~GKtsli~~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---~~~~~~~~~~~ 83 (184)
||+++|..++||||+++++.+...+... .++.... .. .. .....+.+||+||+..+... +..++..++++
T Consensus 1 kIll~G~~~sGKSSli~~l~~~~~~~~~~~~~~T~~~~-~~--~~-~~~~~~~i~D~pG~~~~~~~~~~~~~~~~~~dai 76 (331)
T 3R7W_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPS-LE--HF-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCC-CE--EE-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHhhcCCccccccCCCCCCce-ee--ec-ccCCceEEEECCCCcccCCCcCCHHHHHhccCEE
Confidence 6899999999999999999876543211 1111111 00 01 12257899999998776554 66678899999
Q sequence1 84 LMCFSIDSP--DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME 161 (184)
Q Consensus 84 i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
++|+|+.+. ..+....+.+.. .....+..|+++++||.|+................. . ............+.++.
T Consensus 77 I~ViD~~~~~~~~~~~l~~~i~~-~~~~~~~~~vivvinK~D~~~~~~~~~~~~~i~~~~-~-~~L~~~~~~~~~i~~~~ 153 (331)
T 3R7W_B 77 VYVIDSQDEYINAITNLAMIIEY-AYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRT-G-EELLELGLDGVQVSFYL 153 (331)
T ss_dssp EEECCCSSCTTHHHHHHHHHHHH-HHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHH-H-HTTSSSSCSCCCEEEEC
T ss_pred EEEEcCCcchHHHHHHHHHHHHH-HHHHCCCCcEEEEEecccCCChhhhHHHHHHHHHHH-H-HHHHHcCCCCceeEEEE
Confidence 999999864 222222222222 222235789999999999976432111111100000 0 00000000112367889
Q sequence1 162 CSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 162 ~s~~~~~~i~~~~~~~~~~~~ 182 (184)
+|+.++ ++.++|+++++.++
T Consensus 154 tS~~d~-si~eafs~vi~~li 173 (331)
T 3R7W_B 154 TSIFDH-SIYEAFSRIVQKLI 173 (331)
T ss_dssp CCSSSS-HHHHHHHHHHTTSS
T ss_pred ecCCCc-cHHHHHHHHHHHHh
Confidence 999999 99999988877654
##### No 291 #####
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>3PQC_A Probable GTP-binding protein engB; Rossmann Fold, GTPase, GTP binding; HET: GDP, PEG; 1.9A {Thermotoga maritima}
Probab=99.50 E-value=8.6e-18 Score=114.53 Aligned_cols=163 Identities=18% Similarity=0.225 Sum_probs=94.2 Template_Neff=11.400
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED----------YDRLRP 74 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~ 74 (184)
....++++++|+.++|||||++++.+........... . ............+.+||++|... +.....
T Consensus 20 ~~~~~ki~i~G~~~~GKssl~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3PQC_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPG-K--TRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCC-C--CCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHhCCCcceecCCCC-c--eEEEEEEEeCCEEEEEECCCCCccccChhHHHHHHHHHH
Confidence 3556799999999999999999998665322111100 0 11111112245788999999532 223344
Q sequence1 75 LSYPDTDVILMCFSIDSPDS-LENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 153 (184)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
.++..++++.+++++.+... .......+...+.. ...|+++|+||+|+........... ........
T Consensus 97 ~~~~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~--~~~p~ivv~~K~D~~~~~~~~~~~~----------~~~~~~~~ 164 (195)
T 3PQC_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS--LNIPFTIVLTKMDKVKMSERAKKLE----------EHRKVFSK 164 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHH----------HHHHHHHS
T ss_pred HHHHhcccCcEEEEEeeCCCCCChHHHHHHHHHHH--CCCCEEEEEeCHHHcChhHHHHHHH----------HHHHHHHH
Confidence 45566666666666555221 11111122222221 2588999999999976422111111 11111122
Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
.+..+++++|+.++.++.++++++...+.
T Consensus 165 ~~~~~~~~~s~~~~~~v~~l~~~i~~~~~ 193 (195)
T 3PQC_A 165 YGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp SCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred hCCCeEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 23367899999999999999999887654
##### No 292 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6OT0_A Smoothened homolog, Guanine nucleotide-binding protein; GPCR, Complex, Hedgehog signaling, SIGNALING; HET: CO1; 3.9A {Homo sapiens}
Probab=99.49 E-value=1.1e-17 Score=124.65 Aligned_cols=128 Identities=16% Similarity=0.203 Sum_probs=79.6 Template_Neff=10.000
Q sequence1 56 VELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD----------SLENIPEKWTPEVKHFC-PNVPIILVGNKKDL 124 (184)
Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~~~~vv~nK~D~ 124 (184)
+.+.+||++|+..+...|..++..++++++|+|+++.. ++......+........ ...|+++++||.|+
T Consensus 194 ~~~~i~D~~g~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~ 273 (354)
T 6OT0_A 194 LHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHASMKLFDSICNNKWFTDTSIILFLNKKDL 273 (354)
T ss_dssp EEEEECCCCCCSSSCCSGGGGSCSCSEEEEEECSTTSSSBCTTSSCCBHHHHHHHHHHHHHTCTTCSSCEEEEEECCCTT
T ss_pred eEEEEEEeCCCcchHHHHHHhcCCCCEEEEEEEhhhcCcccccCccccHhHHHHHHHHHHhcCHhhcCCEEEEEecccch
Confidence 45779999999888788888889999999999998866 45444444443332221 26899999999998
Q sequence1 125 RNDEHTRRELAKMKQE---PVKPEEGRDMANR----------IGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 125 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----------~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
.........+...... .........+... ...+.++++||+++.|+.++|.++...+++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 345 (354)
T 6OT0_A 274 FEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCSTDTKNVQFVFDAVTDVIIK 345 (354)
T ss_dssp HHHHHHHSCTTTTCSCCCSCSCHHHHHHHHHHHHHTTCCSCSSCCCBCCCCCSSTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHccCCceecccCcCCCCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 7642110000000000 0000000001000 013568899999999999999988877653
##### No 293 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3W5I_B Ferrous iron transport protein B; G PROTEIN, IRON TRANSPORT, GTPASE; HET: SO4; 2.15A {Gallionella capsiferriformans}
Probab=99.49 E-value=1.1e-17 Score=115.16 Aligned_cols=154 Identities=18% Similarity=0.192 Sum_probs=90.6 Template_Neff=10.700
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDY------DRLRPLSYPD 79 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~------~~~~~~~~~~ 79 (184)
...+|+++|..++|||||++.+..........+..... ....... ....+.+||+||.... ...+..++..
T Consensus 2 ~~~~I~vvG~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiD~pg~~~~~~~~~~~~~~~~~~~~ 79 (204)
T 3W5I_B 2 QFKRIALLGMPNTGKSTLFNRMTGGAARVGNWPGITVELLSGKILL--GADMVEIIDLPGIYDLHGFSDDEQVVRHFLHD 79 (204)
T ss_dssp -CEEEEEEECTTSSHHHHHHHHTTTCCEEECCTTCSSCEEEEEEEE--TTEEEEEEECCCCSCTTCCSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCccCCCCCCceeeeeEEEEE--CCceEEEEECCCCcccCCCCchHHHHHHHHhh
Confidence 45789999999999999999998765433222211111 1111111 2236789999986432 1233334433
Q sequence1 80 --TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184)
Q Consensus 80 --~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
+|++++|+|.++...... +...+.. ...|+++|+||.|+........ ....++...+ +
T Consensus 80 ~~~d~ii~v~d~~~~~~~~~----~~~~l~~--~~~~~v~V~nK~D~~~~~~~~~-------------~~~~~~~~~~-~ 139 (204)
T 3W5I_B 80 NVPDLALVILNATQIERQMS----LLLQLKQ--LNMNIVVLLNMSDEAKQYGITI-------------DSRKMSELLQ-I 139 (204)
T ss_dssp SCCSEEEEEEEGGGHHHHHH----HHHHHHH--TTCCEEEEEECHHHHHHTTCEE-------------CHHHHHHHHT-S
T ss_pred cCCCEEEEEEechhHHHHHH----HHHHHHH--cCCcEEEEEeCHHHhhhcCCcc-------------cHHHHHHHhC-C
Confidence 789999999876433221 1122211 2588999999999987432110 0111122222 5
Q sequence1 158 GYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
+++.+|++++.|+.+++.++.+.+.
T Consensus 140 ~~~~~Sa~~~~~i~~~~~~l~~~~~ 164 (204)
T 3W5I_B 140 PVFQLSGKYGTGYQEALQAVTRALR 164 (204)
T ss_dssp CEEECCC---TTHHHHHHHHHHHTS
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHcc
Confidence 6889999999999999998877654
##### No 294 #####
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>3W5J_A Ferrous iron transport protein B; G PROTEIN, IRON TRANSPORT, GTPASE; HET: GDP; 1.932A {Gallionella capsiferriformans}
Probab=99.49 E-value=1.3e-17 Score=115.00 Aligned_cols=154 Identities=18% Similarity=0.188 Sum_probs=89.4 Template_Neff=10.500
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYD------RLRPLSYPD 79 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~~ 79 (184)
+..+|+++|..++|||||++++....+.....+..... ....+.. ....+.+||+||..... ..+..++..
T Consensus 2 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~ 79 (204)
T 3W5J_A 2 QFKRIALLGMPNTGKSTLFNRMTGGAARVGNWPGITVELLSGKILL--GADMVEIIDLPGIYDLHGFSDDEQVVRHFLHD 79 (204)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHSSCCEECCCTTCCCCEEEEEEEE--TTEEEEEEECCCCSCTTCCSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCcccCCCCCcceeeeeEEEEE--CCceEEEEECCCccccCCCCchHHHHHHHHhh
Confidence 45789999999999999999999775433222211111 1111111 23467899999975432 222333333
Q sequence1 80 --TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184)
Q Consensus 80 --~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
++++++|+|.++...... +...+.. ...|+++|+||+|+........ ....++... ..
T Consensus 80 ~~~d~il~v~d~~~~~~~~~----~~~~l~~--~~~~~vlv~nK~D~~~~~~~~~-------------~~~~~~~~~-~~ 139 (204)
T 3W5J_A 80 NVPDLALVILNATQIERQMS----LLLQLKQ--LNMNIVVLLNMSDEAKQYGITI-------------DSRKMSELL-QI 139 (204)
T ss_dssp SCCSEEEEEEEGGGHHHHHH----HHHHHHH--TTCCEEEEEESHHHHHHTTCEE-------------CHHHHHHHH-TS
T ss_pred cCCCEEEEEEechhHHHHHH----HHHHHHH--cCCCEEEEEeCHHHhhhcCCcc-------------cHHHHHHHh-CC
Confidence 688999988875332211 1111211 2578999999999986432110 011111122 25
Q sequence1 158 GYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
.++.+|++++.|+.++|.++.+.+.
T Consensus 140 ~~~~~Sa~~~~gi~~~~~~l~~~~~ 164 (204)
T 3W5J_A 140 PVFQLSGKYGTGYQEALQAVTRALR 164 (204)
T ss_dssp CEEECC----CCHHHHHHHHHHHHS
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHcc
Confidence 6889999999999999998877654
##### No 295 #####
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>3IBY_D Ferrous iron transport protein B; G protein, G domain, iron; 2.5A {Legionella pneumophila}
Probab=99.49 E-value=1.4e-17 Score=118.49 Aligned_cols=152 Identities=13% Similarity=0.130 Sum_probs=93.9 Template_Neff=10.700
Q sequence1 9 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------------LRPLS 76 (184)
Q Consensus 9 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------------~~~~~ 76 (184)
.+|+++|.+|+|||||++++.+........+...... ...........+.+||+||...... .....
T Consensus 2 ~~i~lvG~~~~GKStl~n~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~ivD~pG~~~~~~~~~~~~~~~~~~~~~~~ 80 (256)
T 3IBY_D 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEK-KTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSSEE-EEEEEEETTEEEEEEECCCCSCSCCC----CHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCeeee-EEEEEEECCeEEEEEECCCCcccccccCCCCHHHHHHHHHHh
Confidence 5799999999999999999987654322222111111 1111112234788999999764332 12223
Q sequence1 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
...+|++++|+|.++......... .+. ....|+++++||+|.......... ...++...+
T Consensus 81 ~~~~d~ii~v~d~~~~~~~~~l~~----~l~--~~~~p~viv~nk~D~~~~~~~~~~-------------~~~l~~~l~- 140 (256)
T 3IBY_D 81 DLEYDCIINVIDACHLERHLYLTS----QLF--ELGKPVVVALNMMDIAEHRGISID-------------TEKLESLLG- 140 (256)
T ss_dssp HSCCSEEEEEEEGGGHHHHHHHHH----HHG--GGTSCEEEEEECHHHHHHTTCEEC-------------HHHHHHHHT-
T ss_pred ccCCCEEEEEEeccchhHHHHHHH----HHH--HhCCCEEEEEechHHHHHcCCccC-------------HHHHHHHHC-
Confidence 345899999999987543333211 111 136899999999998764322111 111122223
Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
.+++.+|+.++.|+.+++..+.+.+
T Consensus 141 ~~~~~~sa~~~~gi~~l~~~i~~~~ 165 (256)
T 3IBY_D 141 CSVIPIQAHKNIGIPALQQSLLHCS 165 (256)
T ss_dssp SCEEECBGGGTBTHHHHHHHHTTCC
T ss_pred CcEEEeecCCCCCHHHHHHHHHHHh
Confidence 6789999999999999988776654
##### No 296 #####
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>2QU8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, plasmodium falciparum, Structural; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.48 E-value=1.4e-17 Score=116.44 Aligned_cols=168 Identities=18% Similarity=0.113 Sum_probs=98.2 Template_Neff=10.900
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR---------LRPL 75 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~ 75 (184)
..+.++|+++|..++|||+|++++..........+...... ...........+.+||++|...... .+..
T Consensus 26 ~~~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2QU8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNL-YVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CE-EEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCccccee-EEEEEecCCcEEEEEECCCCCCccccCcchhHHHHHHH
Confidence 45678999999999999999999986654322111111111 1111223346789999999764321 2333
Q sequence1 76 SYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR- 153 (184)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 153 (184)
+...+|++++|+|+++..++.... ..+...........|+++|+||.|+........... .....+...
T Consensus 105 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~~K~D~~~~~~~~~~~~---------~~~~~~~~~~ 175 (228)
T 2QU8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNK---------LLIKQILDNV 175 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHH---------HHHHHHHHHC
T ss_pred HHhhCCEEEEEEeCchhcCCCHHHHHHHHHHHhhhcCCCcEEEEEEchHhCCccccccchH---------HHHHHHHHhc
Confidence 445689999999998755443211 111121211124689999999999876432111000 000111111
Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
...+.++.+|++++.++.+++.++.+.+.
T Consensus 176 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 204 (228)
T 2QU8_A 176 KNPIKFSSFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp CSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCceEEEeeccCCCCHHHHHHHHHHHHh
Confidence 11257889999999999999999887664
##### No 297 #####
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>3IBY_B Ferrous iron transport protein B; G protein, G domain, iron; 2.5A {Legionella pneumophila}
Probab=99.48 E-value=1.4e-17 Score=118.46 Aligned_cols=152 Identities=13% Similarity=0.138 Sum_probs=93.9 Template_Neff=10.700
Q sequence1 9 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR------------LRPLS 76 (184)
Q Consensus 9 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------------~~~~~ 76 (184)
.+|+++|.+|+|||+|++++.+........+..... ............+.+||+||...+.. .....
T Consensus 2 ~~i~lvG~~~~GKstl~~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~i~D~pG~~~~~~~~~~~~~~~~~~~~~~~ 80 (256)
T 3IBY_B 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVE-KKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSE-EEEEEEEETTEEEEEEECCCCSCSCCCSSSCCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeeccCCCCcee-eEEEEEEECCeEEEEEECCCccccccccCCCCHHHHHHHHHHH
Confidence 589999999999999999998765432222111111 11111112234788999999764432 12223
Q sequence1 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
...+|++++|+|.+.......... .+.. ...|+++++||+|.......... ...+....+
T Consensus 81 ~~~~d~ii~v~d~~~~~~~~~l~~----~l~~--~~~p~ivv~nk~D~~~~~~~~~~-------------~~~l~~~~~- 140 (256)
T 3IBY_B 81 DLEYDCIINVIDACHLERHLYLTS----QLFE--LGKPVVVALNMMDIAEHRGISID-------------TEKLESLLG- 140 (256)
T ss_dssp HSCCSEEEEEEEGGGHHHHHHHHH----HHHT--TCSCEEEEEECHHHHHHTTCCBC-------------HHHHHHHHT-
T ss_pred ccCCCEEEEEEecccHHHHHHHHH----HHHH--hCCCEEEEEecHHHHHHcCCcCC-------------HHHHHHHHC-
Confidence 345899999999987543333221 1111 35889999999999764321110 111222223
Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
.+++.+|+.++.|+.+++.++.+.+
T Consensus 141 ~~~~~~sa~~~~gv~~l~~~i~~~~ 165 (256)
T 3IBY_B 141 CSVIPIQAHKNIGIPALQQSLLHCS 165 (256)
T ss_dssp SCEEECBGGGTBSHHHHHHHHHTCC
T ss_pred CcEEEeecCCCCCHHHHHHHHHHHh
Confidence 6789999999999999988877654
##### No 298 #####
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>3PQC_B Probable GTP-binding protein engB; Rossmann Fold, GTPase, GTP binding; HET: PEG, GDP; 1.9A {Thermotoga maritima}
Probab=99.48 E-value=1.5e-17 Score=113.37 Aligned_cols=163 Identities=17% Similarity=0.225 Sum_probs=91.3 Template_Neff=11.300
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED----------YDRLRP 74 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~ 74 (184)
....++|+++|..|+|||||++++.+........... . ............+.+||++|... +...+.
T Consensus 20 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3PQC_B 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPG-K--TRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHTTTTBCCCSCCCC-C--SSCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceecCCCC-C--eEEEEEEEeCCEEEEEEcCCCCccccchhhHHHHHHHHH
Confidence 4566899999999999999999998765432211110 0 01111112234678999999532 223344
Q sequence1 75 LSYPDTDVILMCFSIDSPD-SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 153 (184)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
.++..++.+.+++.+.+.. ........+...+.. ...|+++|+||.|+............ .......
T Consensus 97 ~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nk~D~~~~~~~~~~~~~----------~~~~~~~ 164 (195)
T 3PQC_B 97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS--LNIPFTIVLTKMDKVKMSERAKKLEE----------HRKVFSK 164 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHH----------HHHHHHT
T ss_pred HHHHhhhcCcEEEEEeeCCCCCCHHHHHHHHHHHH--cCCCEEEEeecHHHcChhHHHHHHHH----------HHHHHHH
Confidence 4555544444444444321 111111122222221 25899999999999764211111110 1111112
Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
.....++.+|+.++.++.++++++...+.
T Consensus 165 ~~~~~~~~~sa~~~~~v~~l~~~i~~~i~ 193 (195)
T 3PQC_B 165 YGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp TCCCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hCCceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 22357889999999999999999887654
##### No 299 #####
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>5DO9_C Guanine nucleotide-binding protein G(q) subunit; GTP-Binding Protein alpha subunits, Gq-G11; HET: ALF, GDP; 2.6A {Mus musculus}
Probab=99.48 E-value=1.7e-17 Score=121.75 Aligned_cols=129 Identities=19% Similarity=0.216 Sum_probs=79.9 Template_Neff=9.700
Q sequence1 55 QVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI----------DSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKD 123 (184)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D 123 (184)
...+.+||++|+..+...+..++..++++++|+|+ .+...+......+..+.... ....|+++++||+|
T Consensus 162 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~iiiv~nK~D 241 (314)
T 5DO9_C 162 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 241 (314)
T ss_dssp SCEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEEGGGGGCBCSSSSSCBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEEcCCCchhhHHHHHHhcCCCEEEEEEehHHhchhhcCCCCcchhHHHHHHHHHHhhCHHHhccEEEEEeecHH
Confidence 35788999999887777788888899999999998 55455555444444444321 12689999999999
Q sequence1 124 LRNDEHTRRELAKMKQE----PVKPEEGRDMA---------NRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 124 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
................. .........+. .....+.++.+|++++.|+.++|.++.+.+++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~f~~l~~~~~~ 314 (314)
T 5DO9_C 242 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 314 (314)
T ss_dssp HHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHCCCCCTC
T ss_pred HHHHHHhcccHHHhCCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCeeEEEEecCCCHHHHHHHHHHHHHHhhC
Confidence 87643110000000000 00000000000 00123578899999999999999999887653
##### No 300 #####
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>1UDX_A the GTP-binding protein Obg; GTP-binding protein, Obg, TGS domain; 2.07A {Thermus thermophilus} SCOP: d.242.1.1, b.117.1.1, c.37.1.8
Probab=99.48 E-value=1.7e-17 Score=126.10 Aligned_cols=157 Identities=22% Similarity=0.242 Sum_probs=95.3 Template_Neff=9.200
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRL-------RPLSYP 78 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~~ 78 (184)
...+|+++|.+++|||||++++..........+... ......+.. .....+.+||+||+...... +..++.
T Consensus 156 ~~~~V~lvG~~~aGKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~D~pG~~~~~~~~~~l~~~~l~~l~ 234 (416)
T 1UDX_A 156 LIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEV-SEEERFTLADIPGIIEGASEGKGLGLEFLRHIA 234 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEEC-SSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHT
T ss_pred cceeEEEEcCCCCCHHHHHHHHhhcCCCccCCCCCccCCceEEEEe-cCCceEEEEecCCccCCccCCCCCcHHHHHHHh
Confidence 456899999999999999999987653222111111 111111111 12457889999997654322 225667
Q sequence1 79 DTDVILMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIG 155 (184)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
.++++++|+|+++. .+... ..+...+... ....|+++|+||+|+........ .. ..... .
T Consensus 235 ~~d~il~VvD~~~~-~~~~~-~~~~~~l~~~~~~~~~~p~ivV~nK~Dl~~~~~~~~-~~-------------~~l~~-~ 297 (416)
T 1UDX_A 235 RTRVLLYVLDAADE-PLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKA-LA-------------DALAR-E 297 (416)
T ss_dssp SSSEEEEEEETTSC-HHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHH-HH-------------HHHHT-T
T ss_pred ccCEEEEEEeCCCC-HHHHH-HHHHHHHHhcCHHHhcCCeEEEecccccCcHHHHHH-HH-------------HHHHH-C
Confidence 88999999999872 22222 2223222221 12589999999999976321110 00 00001 1
Q sequence1 156 AFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 156 ~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
...++++|++++.++.+++..+...+
T Consensus 298 ~~~~~~iSa~~~~gi~~l~~~i~~~~ 323 (416)
T 1UDX_A 298 GLAVLPVSALTGAGLPALKEALHALV 323 (416)
T ss_dssp TSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 25688999999999999988776654
##### No 301 #####
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>1SHZ_D Guanine Nucleotide-Binding Protein Galpha(13):Galpha(i1) Chimera; SIGNAL TRANSDUCTION, PROTEIN COMPLEX, SIGNALING; HET: ALF, GDP; 2.85A {Mus musculus, Rattus norvegicus} SCOP: a.66.1.1, c.37.1.8
Probab=99.48 E-value=1.8e-17 Score=122.91 Aligned_cols=128 Identities=17% Similarity=0.227 Sum_probs=78.9 Template_Neff=9.600
Q sequence1 56 VELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD----------SLENIPEKWTPEVKHF-CPNVPIILVGNKKDL 124 (184)
Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~ 124 (184)
..+.+||++|+..+...+..++..++++++|+|+++.. .+......+....... ....|+++++||+|+
T Consensus 180 ~~l~i~D~~G~~~~~~~~~~~~~~~~~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 259 (340)
T 1SHZ_D 180 LHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQTNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 259 (340)
T ss_dssp EEEEEEECCCSHHHHTTTGGGCSSCSEEEEEEESTTSSCBCSSSTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHH
T ss_pred eEEEEEECCCCchhhHHHHHHccCCCEEEEEEeHHHHcHhhccCcCCcHHHHHHHHHHHHHcChhhcCCeEEEEeccHHH
Confidence 46779999999888777888888999999999999865 4444444444333221 126889999999999
Q sequence1 125 RNDEHTRRELAKMKQ---EPVKPEEGRDMAN--------R--IGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 125 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--------~--~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
............... ..........+.. . ...+.++.+|+.++.++.++|+.+.+.+++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~i~~~i~~ 331 (340)
T 1SHZ_D 260 FEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 331 (340)
T ss_dssp HHHHHHHSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEECCCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCChhHcCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCCeeEEEEEcCCCHHHHHHHHHHHHHHHHH
Confidence 863210000000000 0000000000000 0 013568899999999999999998887754
##### No 302 #####
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>6HLU_A PROTEIN; GTPase, LRRK2, Roco proteins, hydrolase; 3.29A {Chlorobaculum tepidum}
Probab=99.47 E-value=1.9e-17 Score=137.42 Aligned_cols=160 Identities=21% Similarity=0.269 Sum_probs=97.4 Template_Neff=10.400
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI---------EVDGKQVELALWDTAGLEDYDRLRPLS 76 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~---------~~~~~~~~~~i~D~~g~~~~~~~~~~~ 76 (184)
.+.++|+++|.+|+|||||++++.+..+.....++......... ........+.+||++|++.+...+..+
T Consensus 478 ~~~~kv~lvG~~g~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 557 (974)
T 6HLU_A 478 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 557 (974)
T ss_dssp CCEEEEEEECSSTTTHHHHHTTSSCC----------CCCCEEEEGGGSTTCTTCGGGTTCEEEEECCSSCCTTTTTCTHH
T ss_pred cceeEEEEECCCCCCHHHHHHHHhCCCCCCcccccceeeEEeeecCCCCCCCCCcccceEEEEEEecCcCchhhhhcccc
Confidence 45689999999999999999999877654332222111111000 001123468999999999998888888
Q sequence1 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
+..++++++|+|..+.... ..|...+.......|+++|+||.|......... .......... .
T Consensus 558 ~~~~~~~ilV~d~~~~~~~----~~~~~~l~~~~~~~~vilV~~k~D~~~~~~~~~------------~~~~~~~~~~-~ 620 (974)
T 6HLU_A 558 MTRSSVYMLLLDSRTDSNK----HYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQ------------KKINERFPAI-E 620 (974)
T ss_dssp HHSSEEEEEEECSSTTTTS----HHHHHHHHHHTCSSCEEEEECCTTTCTTCCCCH------------HHHHHHSGGG-T
T ss_pred cCCCeEEEEEEeCCCcchH----HHHHHHHHHHCCCCCEEEEeeccccCccccccH------------HHHHHHhhhh-c
Confidence 8899999999998865432 334444443334689999999999876432110 0001111111 1
Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
..++.+|++++.++.+++.++.+.+.
T Consensus 621 ~~~~~isa~~~~~~~~l~~~l~~~~~ 646 (974)
T 6HLU_A 621 NRFHRISCKNGDGVESIAKSLKSAVL 646 (974)
T ss_dssp TCEEECCC-----CCSHHHHHHHHHT
T ss_pred cceeecccCCCCCHHHHHHHHHHhhc
Confidence 46888999999999999988877654
##### No 303 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3A1W_A Iron(II) transport protein B; FeoB, iron transporter, small GTPase; 1.9001A {Thermotoga maritima}
Probab=99.47 E-value=2e-17 Score=109.90 Aligned_cols=156 Identities=16% Similarity=0.109 Sum_probs=93.6 Template_Neff=11.700
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD------RLRPLSYP- 78 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~- 78 (184)
.+.++|+++|..++|||||++++..........+.. ...............+.+||++|..... ..+..+..
T Consensus 3 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (168)
T 3A1W_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGV-TVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (168)
T ss_dssp -CEEEEEEECCSSSSHHHHHHHHHTTCEEEEECTTS-SCEEEEEEEEETTEEEEEEECCCCSCTTSSSHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCceeeCCCCc-eecceeeEEEeCCEEEEEEeCCCCCCCCCchhhHHHHHHHHHh
Confidence 457899999999999999999998654322111111 0011111122234578899999976432 12233332
Q sequence1 79 -DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184)
Q Consensus 79 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
.+|++++|+|..+...... .+.... ....|+++|+||+|+......... ...+....+ .
T Consensus 82 ~~~~~i~~v~d~~~~~~~~~---~~~~~~---~~~~~~i~v~~k~d~~~~~~~~~~-------------~~~~~~~~~-~ 141 (168)
T 3A1W_A 82 GDADLVILVADSVNPEQSLY---LLLEIL---EMEKKVILAMTAIDEAKKTGMKID-------------RYELQKHLG-I 141 (168)
T ss_dssp TCSSEEEEEEESSSCHHHHH---HHHHHH---HHCSCEEEEEECHHHHHC----CC-------------HHHHHHHHT-S
T ss_pred CCCCEEEEEEECCCchhhHH---HHHHHH---HcCCCEEEEEEcHHHhcccchHHH-------------HHHHHHHhC-C
Confidence 6899999999887542221 112222 125789999999998764321110 001111122 5
Q sequence1 158 GYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
.++++|++.+.+++++++++.+.+.
T Consensus 142 ~~~~~s~~~~~~i~~~~~~l~~~~~ 166 (168)
T 3A1W_A 142 PVVFTSSVTGEGLEELKEKIVEYAQ 166 (168)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred CEEEeeeccCCCHHHHHHHHHHHHh
Confidence 6889999999999999998877654
##### No 304 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1ZCA_A Galphai/12; GTP-binding, Lipoprotein, Membrane, Palmitate, Transducer; HET: GDP, ALF; 2.9A {Mus musculus} SCOP: c.37.1.8, a.66.1.1
Probab=99.47 E-value=2.1e-17 Score=123.34 Aligned_cols=128 Identities=20% Similarity=0.139 Sum_probs=80.2 Template_Neff=9.500
Q sequence1 56 VELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD----------SLENIPEKWTPEVKHFC-PNVPIILVGNKKDL 124 (184)
Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~~~~vv~nK~D~ 124 (184)
+.+.+||++|+..+...|..++..++++++|+|+++.. ++......+..+..... ...|+++++||+|+
T Consensus 199 ~~l~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~piiiv~nK~Dl 278 (359)
T 1ZCA_A 199 IPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRLVESMNIFETIVNNKLFFNVSIILFLNKMDL 278 (359)
T ss_dssp EEEEEEEECCSHHHHTTGGGTTTTCSEEEEEEETTCTTCBCSSSSSSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHH
T ss_pred eEEEEEECCCCchhHhhHHHHhcCCCEEEEEEecccchhhhccCCCCccHHHHHHHHHHHHhCccccCCCEEEEEeCcch
Confidence 56789999999888778888888999999999999765 45544444444332221 26899999999998
Q sequence1 125 RNDEHTRRELAKMKQEP----VKPEEGRDMANR---------IGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 125 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---------~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
...........+..... ........+... ...+.++.+|+.++.++.++|.++...+++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~i~~ 350 (359)
T 1ZCA_A 279 LVEKVKSVSIKKHFPDFKGDPHRLEDVQRYLVQCFDRKRRNRSKPLFHHFTTAIDTENIRFVFHAVKDTILQ 350 (359)
T ss_dssp HHHHHHHSCSTTTCTTCCSCTTCHHHHHHHHHHHHHHTCSCTTSCCCEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhcCCHHHhCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCeeeEEEeeCCCchhHHHHHHHHHHHHHH
Confidence 76422111000000000 000000001000 123568899999999999999998877653
##### No 305 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4FMC_F ROrf2, Ras-related protein Rab-1A; alpha-beta fold, Rab1-GAP, Rab1, PROTEIN; HET: PGE, AF3, GDP; 2.8A {Escherichia coli}
Probab=99.47 E-value=2.1e-17 Score=101.87 Aligned_cols=115 Identities=32% Similarity=0.605 Sum_probs=38.5 Template_Neff=13.200
Q sequence1 11 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI 89 (184)
Q Consensus 11 i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 89 (184)
|+++|++++|||++++++..........+..... .......++....+.+||++|...+...+..+...++++++++++
T Consensus 1 i~~~G~~~~GKs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (117)
T 4FMC_F 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 80 (117)
T ss_dssp CCCCCCTTSSSHHH---HHC------CCCCCSEEC--------------CCCEECCSGGGSC----------------CT
T ss_pred CEEECCCCCCHHHHHHHHhCCCCCcccCCCceeeEEEEEEEECCEEEEEEEEeCCCchHhHHHHHHHhccCCEEEEEeeC
Confidence 5789999999999999988665433222211111 112222233345788999999887776777777889999999999
Q sequence1 90 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 125 (184)
Q Consensus 90 ~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~ 125 (184)
++..++......+...........|+++++||.|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~ 116 (117)
T 4FMC_F 81 TDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 116 (117)
T ss_dssp TC-CTTGGGTTSTTTHHHHSC---------------
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCCEEEEEecccCC
Confidence 876555444333333222223467899999999974
##### No 306 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4TMW_B eIF5B; Translation factor, GTPase, Subunit joining; HET: GTP; 1.55A {Chaetomium thermophilum}
Probab=99.47 E-value=2.2e-17 Score=122.21 Aligned_cols=119 Identities=19% Similarity=0.173 Sum_probs=77.6 Template_Neff=11.000
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADI----------------EVDGKQVELALWDTAGL 66 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~----------------~~~~~~~~~~i~D~~g~ 66 (184)
.....++|+++|..++|||||+++|..........+...... ...+ ........+.+||+||+
T Consensus 6 ~~~~~~~I~v~G~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~pG~ 85 (345)
T 4TMW_B 6 DNLRSPICCILGHVDTGKTKLLDKIRQTNVQEGEAGGITQQIGATYFPVEAIKQKTAVVNKDGKFEFKVPGLLIIDTPGH 85 (345)
T ss_dssp GGBCCCEEEEEESTTSSHHHHHHHHHTCCHHHHSGGGCCCSCEEEEEEHHHHHHHTGGGCTTSCCCCCSSEEEEEECCCS
T ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHhhcCcCCCCCCcccceeEeEEcCHHHHhhhcceecCCCCeeccCCcEEEEECCCC
Confidence 356678999999999999999999987654322111110000 0000 01111235899999999
Q sequence1 67 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184)
Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184)
+.+...+..++..+|++++|+|+++....... +.+. .+.. ...|+++++||+|+..
T Consensus 86 ~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~~~-e~l~-~~~~--~~~p~ivv~nK~D~~~ 141 (345)
T 4TMW_B 86 ESFSNLRSRGSSLCNIAILVVDIMHGLEPQTI-ESLR-LLRE--RKTPFVVALNKIDRLY 141 (345)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHH-HHHH--TTCCEEEEEECGGGST
T ss_pred HHHhHHHHhchhcCCEEEEEEeCCCCCCHHHH-HHHH-HHHH--cCCCEEEEEeChhhcc
Confidence 88887787888899999999999874332221 2222 2221 2578999999999875
##### No 307 #####
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>1PUI_A Probable GTP-binding protein engB; STRUCTURAL GENOMICS, NYSGXRC T16, GTPASE; HET: SO4; 2.0A {Escherichia coli} SCOP: c.37.1.8
Probab=99.47 E-value=2.2e-17 Score=114.19 Aligned_cols=163 Identities=14% Similarity=0.091 Sum_probs=92.8 Template_Neff=10.800
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLED----------YDRL 72 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~----------~~~~ 72 (184)
.....++|+++|..++|||||++++................. ...... ...+.+||++|... +...
T Consensus 22 ~~~~~~~v~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~D~~g~~~~~~~~~~~~~~~~~ 98 (210)
T 1PUI_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV---ADGKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEE---ETTEEEEECCCCC------CCHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCceeEEEEEEe---CCCeEEEeCCCCCcccCCHHHHHHHHHH
Confidence 356778999999999999999999887643221111110110 111111 12578999999532 2222
Q sequence1 73 RPLSYPD---TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 149 (184)
Q Consensus 73 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (184)
...++.. ++++++|+|.++.... ....+...... ...|+++|+||+|+.............. ..
T Consensus 99 ~~~~~~~~~~~d~ii~v~d~~~~~~~--~~~~~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~~~---------~~ 165 (210)
T 1PUI_A 99 LGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVR---------EA 165 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHH---------HH
T ss_pred HHHHHHhCCCccEEEEEeeCCCCCCH--HHHHHHHHHHH--CCCcEEEEEeCHHhCChhHHHHHHHHHH---------HH
Confidence 2223333 8999999999864221 11222222221 4689999999999987432211111100 00
Q sequence1 150 MANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 150 ~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
.......+.++.+|+.++.++.+++.++.+.+.
T Consensus 166 l~~~~~~~~~~~~S~~~~~~~~~l~~~i~~~~~ 198 (210)
T 1PUI_A 166 VLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHhcCCCCeEEEeecCcccCHHHHHHHHHHHHh
Confidence 011112367899999999999999998887654
##### No 308 #####
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>3A1S_B Iron(II) transport protein B; FeoB, iron transporter, small GTPase; HET: MPD, MSE, GDP; 1.5A {Thermotoga maritima}
Probab=99.47 E-value=2.2e-17 Score=117.45 Aligned_cols=155 Identities=16% Similarity=0.114 Sum_probs=95.1 Template_Neff=11.000
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD------RLRPLSYP- 78 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~- 78 (184)
.+.++|+++|.+|+|||||++++..........+...... ...........+.+||+||..... ..+..++.
T Consensus 3 ~~~~~i~vvG~~~~GKstl~~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~i~D~pG~~~~~~~~~~~~~~~~~~~~ 81 (258)
T 3A1S_B 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEK-KEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSSCEE-EEEEEEETTEEEEEEECCCCSSSSCCSHHHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCCCcee-EEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHHc
Confidence 4678999999999999999999987654222111111111 111111123478899999976432 23333433
Q sequence1 79 -DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184)
Q Consensus 79 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
.+|++++|+|.++...... .+.... ....|+++|+||+|+.......... ..+....+ .
T Consensus 82 ~~~d~ii~v~d~~~~~~~~~---~~~~~~---~~~~~~ivv~nk~D~~~~~~~~~~~-------------~~l~~~~~-~ 141 (258)
T 3A1S_B 82 GDADLVILVADSVNPEQSLY---LLLEIL---EMEKKVILAMTAIDEAKKTGMKIDR-------------YELQKHLG-I 141 (258)
T ss_dssp SCCSEEEEEEESSSCHHHHH---HHHHHH---TTTCCEEEEEECHHHHHHTTCCBCH-------------HHHHHHHC-S
T ss_pred CCCCEEEEEecCCCHHHHHH---HHHHHH---hcCCcEEEEeecHHHHHHcCCcccH-------------HHHHHHHC-C
Confidence 6899999999987542211 112222 1258999999999987643221110 11112222 5
Q sequence1 158 GYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
+++.+|+.++.|+.+++.++.+.+
T Consensus 142 ~~~~~sa~~~~~~~~l~~~l~~~~ 165 (258)
T 3A1S_B 142 PVVFTSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CEEEeecCCCCCHHHHHHHHHHHH
Confidence 788999999999999998876654
##### No 309 #####
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>5DI3_B ADP-ribosylation factor-like protein 13B, ARF-like; G-protein, ADP ribosylation like protein; HET: GNP; 2.5A {Chlamydomonas reinhardtii}
Probab=99.47 E-value=2.3e-17 Score=117.47 Aligned_cols=118 Identities=18% Similarity=0.266 Sum_probs=80.8 Template_Neff=11.400
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
...++|+++|.+|+|||||++++........ .++.... ..........+.+||+||...+...+..++..+|++++
T Consensus 2 ~~~~~i~vvG~~~~GKssl~~~l~~~~~~~~-~~~~~~~---~~~~~~~~~~~~l~D~pg~~~~~~~~~~~~~~~~~~l~ 77 (263)
T 5DI3_B 2 PRKITIALLGLDNAGKTTLLNSIQGEVDRDT-TPTFGFN---STTLNEGKYKIEVFDLGGGKNIRGVWKKYLAEVHAIVY 77 (263)
T ss_dssp CEEEEEEEESCTTSCHHHHHHHTTTCCSCCC-CCCCSCC---EEEEEETTEEEEEEECCCSTTTGGGGGGTGGGCSEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHcCCCCCCC-CCceEEe---EEEEecCCEEEEEEECCCCHHHHHHHHHHcCCCCEEEE
Confidence 3568999999999999999999886533211 1111111 11112234578899999988777777778889999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRND 127 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~ 127 (184)
|+++++..++......+...+... ....|+++++||.|+...
T Consensus 78 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~D~~~~ 120 (263)
T 5DI3_B 78 VVDAADPGRFEESKMTMAEVLENQFMRDKPICIFANKQDLPTA 120 (263)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSGGGTTCCEEEEEECTTSTTC
T ss_pred EEECCChHhHHHHHHHHHHHHHHHhcCCCcEEEEEECccCCCh
Confidence 999987655555444444443222 235889999999998764
##### No 310 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3DPU_B Rab family protein; RocCOR, G-domain, COR, GTP-binding, Nucleotide-binding; 2.9A {Chlorobaculum tepidum}
Probab=99.47 E-value=2.3e-17 Score=128.92 Aligned_cols=160 Identities=21% Similarity=0.272 Sum_probs=0.0 Template_Neff=10.500
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DI--------EVDGKQVELALWDTAGLEDYDRLRPLS 76 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~-~~--------~~~~~~~~~~i~D~~g~~~~~~~~~~~ 76 (184)
.+..||+++|.+|+|||||+++|....+.....++....... .. ........+.+||++|++.+...+..+
T Consensus 39 ~~~~ki~lvG~~~~GKTsL~~~L~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~f 118 (535)
T 3DPU_B 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEEECCCCCCHHHHHHHHcCCCCCCcccCccceEEEeeecCCCCCCCCccccceEEEEEEecCCcccchhhcccc
Confidence 467899999999999999999998776543222221111110 00 001245688999999999888888888
Q sequence1 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
+...+++++|+|..+.... ..|...+....+..|+++|+||+|......... .......... .
T Consensus 119 l~~~~~~ilv~d~~~~~~~----~~wl~~i~~~~~~~~vilV~tk~D~~~~~~~~~------------~~~~~~~~~~-~ 181 (535)
T 3DPU_B 119 MTRSSVYMLLLDSRTDSNK----HYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQ------------KKINERFPAI-E 181 (535)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCEEEEEEEeCCCcchH----HHHHHHHHHHcCCCcEEEEEEcccCCCCcchhH------------HHHHHhCchh-h
Confidence 8889999999998765322 334444433335689999999999876321100 0000000111 1
Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
..++.+|+.++.++.+++..+.+.+.
T Consensus 182 ~~~~~~s~~~~~~i~~l~~~i~~~~~ 207 (535)
T 3DPU_B 182 NRFHRISCKNGDGVESIAKSLKSAVL 207 (535)
T ss_dssp --------------------------
T ss_pred ceeeEccCCCCCCHHHHHHHHHHHHh
Confidence 35778899999999988887776553
##### No 311 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6VP8_A Leucine-rich repeat serine/threonine-protein kinase 2; Kinase, GTPase, SIGNALING PROTEIN; HET: TPO; 3.5A {Homo sapiens}
Probab=99.47 E-value=2.3e-17 Score=139.49 Aligned_cols=122 Identities=25% Similarity=0.420 Sum_probs=72.8 Template_Neff=9.500
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV--YVPTVFENY-VADIEVD---GKQVELALWDTAGLEDYDRLRPLSYP 78 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~--~~~t~~~~~-~~~~~~~---~~~~~~~i~D~~g~~~~~~~~~~~~~ 78 (184)
..+..+|+++|.+++|||||++++....+... ..++....+ ....... .....+.+||+||+..+......++.
T Consensus 2 ~~~~~kI~ivG~~~~GKSSLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~i~DtpG~~~~~~~~~~~l~ 81 (1198)
T 6VP8_A 2 PYNRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMT 81 (1198)
T ss_dssp BCCEEEEEEEECTTCCHHHHHHHHC--------------CCEEEEEEC---------CEEEEEECCSCCTHHHHCC----
T ss_pred CCccEEEEEECCCCCCHHHHHHHHhcCCCcccCcccCeeeEEEEEEEEEecCCCCceEEEEEEEcCCCHHHHhhcHHhcc
Confidence 35678999999999999999999987665432 111211111 1111111 22367899999998888777778888
Q sequence1 79 DTDVILMCFSIDS-PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 127 (184)
Q Consensus 79 ~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~ 127 (184)
.+|++++|+|+++ ...+... ..+...+.......|+++|+||+|+...
T Consensus 82 ~~d~illV~D~s~~~~~~~~~-~~~l~~i~~~~~~~piiiV~NK~Dl~~~ 130 (1198)
T 6VP8_A 82 QRALYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDE 130 (1198)
T ss_dssp -CEEEEEEEETTTCHHHHHHT-HHHHHHHHHHHTTSCEEEEEECGGGSCH
T ss_pred cCCEEEEEEECCCchHHHHHH-HHHHHHHHHhcCCCCEEEEEECCCCCCH
Confidence 9999999999988 3333333 2333333322246899999999999763
##### No 312 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3AH8_A Guanine nucleotide-binding protein G(i) subunit; Heterotrimeric G protein, GTPase, Galpha-q; HET: GDP; 2.9A {Chromobacterium sp.}
Probab=99.47 E-value=2.3e-17 Score=122.93 Aligned_cols=129 Identities=18% Similarity=0.216 Sum_probs=79.4 Template_Neff=9.400
Q sequence1 55 QVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI----------DSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKD 123 (184)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~-~~~~~~vv~nK~D 123 (184)
...+.+||++|++.+...+..++.+++++++|+|+ .+..++......+........ ...|+++++||+|
T Consensus 194 ~~~i~i~D~~G~~~~~~~~~~~~~~~d~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piivv~nK~D 273 (355)
T 3AH8_A 194 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 273 (355)
T ss_dssp TEEEEEEECTTCCSCGGGTGGGGTTCSEEEEEEESGGGGCCCTTTTSCCHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEECCCCcchHHHHHHHHcCCCEEEEEeeHHHcccccCCCCCCCcHHHHHHHHHHHHhCcccCCCCEEEEeeChH
Confidence 35778999999888877787788889999999998 544445444444444433221 2689999999999
Q sequence1 124 LRNDEHTRREL----AKMKQEPVKPEEGRDM--------A-NRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 124 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
+.........+ ...............+ . .....+.++.+|++++.++.++|.++.+.+++
T Consensus 274 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~lf~~i~~~i~~ 346 (355)
T 3AH8_A 274 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 346 (355)
T ss_dssp HHHHHTTTSCSGGGSTTCCSCSSCHHHHHHHHHHHHHHTCCCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCHHHhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCcceEEEEeCCChHHHHHHHHHHHHHHHH
Confidence 98643100000 0000000000000000 0 00123568899999999999999998887654
##### No 313 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2G3Y_A GTP-binding protein GEM; GEM, small GTPase, GDP, inactive; HET: GDP; 2.4A {Homo sapiens} SCOP: c.37.1.8
Probab=99.47 E-value=2.4e-17 Score=113.88 Aligned_cols=165 Identities=24% Similarity=0.285 Sum_probs=97.1 Template_Neff=11.100
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY-VPT-VFENYVADIEVDGKQVELALWDTAGLEDYD-RLRPLSYPDTD 81 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~ 81 (184)
....++|+++|..++|||||++++......... ... ...........++....+.++|++|..... .....+...++
T Consensus 34 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d 113 (211)
T 2G3Y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCCCCCCHHHHHHHCCCCCCS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCcccceEEEEEEECCeEEEEEEEECCCCCCchHHHHHHHhcCCC
Confidence 456789999999999999999999864322111 111 111112222233334455666776543222 23444456689
Q sequence1 82 VILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160 (184)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
++++|+++++...+......+....... ....|+++|+||+|+.......... ........ ...++
T Consensus 114 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvi~v~nk~D~~~~~~~~~~~------------~~~~~~~~-~~~~~ 180 (211)
T 2G3Y_A 114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSE------------GRACAVVF-DCKFI 180 (211)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHH------------HHHHHHHH-TCEEE
T ss_pred EEEEEEECCChHhHHHHHHHHHHHHHhCCCCCCCEEEEEeCccccccccCCHHH------------HHHHHHHH-CCCEE
Confidence 9999999987655444433222222111 2368999999999997532111000 00011111 25788
Q sequence1 161 ECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 161 ~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
++|+.++.|+.+++.++.+.+.
T Consensus 181 ~~sa~~~~gi~~l~~~l~~~~~ 202 (211)
T 2G3Y_A 181 ETSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999888765
##### No 314 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1WF3_A GTP-binding protein; GTP-binding protein, GTPase, RIKEN Structural; HET: GNP, GOL; 1.88A {Thermus thermophilus} SCOP: d.52.3.1, c.37.1.8
Probab=99.46 E-value=2.6e-17 Score=120.00 Aligned_cols=160 Identities=18% Similarity=0.121 Sum_probs=91.6 Template_Neff=10.000
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR--------LRPL 75 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~ 75 (184)
...+..+++++|.+++|||||++++.+...........................+.++|+||...... ....
T Consensus 3 ~~~~~~~v~vvG~~~~GKStlin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~i~DtpG~~~~~~~~~~~~~~~~~~ 82 (301)
T 1WF3_A 3 EKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CCCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred CCceeEEEEEECCCCCCHHHHHHHHhCCCcCCCCCCCCCccceEEEEEEeCCeEEEEEECCCCCCchhHhhHhhHHHHHH
Confidence 45677899999999999999999998765432211111111111111122346789999999654321 2223
Q sequence1 76 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIG 155 (184)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
.+..+|++++|+|+....+... ..+...+.......|+++|+||+|+....... ... .. ....
T Consensus 83 ~l~~~d~ii~vvd~~~~~~~~~--~~~~~~l~~~~~~~p~ilV~nK~Dl~~~~~~~--~~~----------~~---~~~~ 145 (301)
T 1WF3_A 83 ALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPEEA--MKA----------YH---ELLP 145 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHHHH--HHH----------HH---HTST
T ss_pred HHccCCEEEEEecCCCCCChHH--HHHHHHHHHhcCCCCEEEEEeCccccCCHHHH--HHH----------HH---HHCC
Confidence 4567899999999876432221 11222222222357899999999987543110 000 00 0011
Q sequence1 156 AFGYMECSAKTKDGVREVFEMATRA 180 (184)
Q Consensus 156 ~~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184)
...++.+|+.++.++.++...+...
T Consensus 146 ~~~~~~~Sa~~~~~v~~l~~~l~~~ 170 (301)
T 1WF3_A 146 EAEPRMLSALDERQVAELKADLLAL 170 (301)
T ss_dssp TSEEEECCTTCHHHHHHHHHHHHTT
T ss_pred CCCCeecccCCcccHHHHHHHHHHh
Confidence 1346677888887777776655443
##### No 315 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4FID_A G protein alpha subunit; RAS-LIKE DOMAIN, ALL-HELICAL DOMAIN, GTP; HET: GDP; 2.62A {Entamoeba histolytica}
Probab=99.46 E-value=2.9e-17 Score=121.76 Aligned_cols=128 Identities=14% Similarity=0.146 Sum_probs=78.8 Template_Neff=9.700
Q sequence1 56 VELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDL 124 (184)
Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~~~~vv~nK~D~ 124 (184)
+.+.+||++|++.+...|..++..++++++|+|++ +..++......+........ ...|+++++||.|+
T Consensus 161 ~~~~l~D~~g~~~~~~~~~~~~~~~~~ii~v~dl~~~~~~~~~~~~~~s~~~~~~~~~~i~~~~~~~~~~iilv~nK~Dl 240 (340)
T 4FID_A 161 IPFHLIDVGGQRSERKKWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDL 240 (340)
T ss_dssp CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHH
T ss_pred eeEEEEEcCCCcccHHHHHHhhcCCCEEEEEEEhhHhcchhhcCCCcccHHHHHHHHHHHHcCHHhcCCeEEEEccchHH
Confidence 56789999999888888888889999999999998 44445444444444333221 25789999999999
Q sequence1 125 RNDEHTRRELAKMKQ---EPVKPEEGRD-----MAN---------------------RIGAFGYMECSAKTKDGVREVFE 175 (184)
Q Consensus 125 ~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~---------------------~~~~~~~~~~s~~~~~~i~~~~~ 175 (184)
...........+... .......+.. +.. ....+.++++||+++.|+..+|.
T Consensus 241 ~~~k~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~ 320 (340)
T 4FID_A 241 FEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFM 320 (340)
T ss_dssp HHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHH
T ss_pred HHHHhccCCHHHhCCCCCCCCcHHHHHHHHHHHHHHHhhhhhhcccCCCCCCcCCCCCCceEEEEeeecCCHHHHHHHHH
Confidence 764211100000000 0000000000 000 01224578999999999999999
Q sequence1 176 MATRAALQ 183 (184)
Q Consensus 176 ~~~~~~~~ 183 (184)
.+.+.+++
T Consensus 321 ~i~~~i~~ 328 (340)
T 4FID_A 321 LAVDVIMK 328 (340)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776653
##### No 316 #####
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>4N0D_A Guanine nucleotide-binding protein G(i) subunit; Rossmann fold, Guanine nucleotide binding; HET: GSP; 1.55A {Rattus norvegicus}
Probab=99.46 E-value=2.9e-17 Score=122.48 Aligned_cols=129 Identities=17% Similarity=0.210 Sum_probs=77.8 Template_Neff=9.200
Q sequence1 55 QVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDS----------LENIPEKWTPEVKHF-CPNVPIILVGNKKD 123 (184)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D 123 (184)
...+.+||++|++.+...+..++..++++++|+|+.+..+ +......+....... ....|+++|+||.|
T Consensus 195 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~D 274 (356)
T 4N0D_A 195 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 274 (356)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEEeCCCccchhHHHHHccCCCEEEEEEehhHcCcccccCcccchhHHHHHHHHHHHcCHhhcCCeEEEEecchh
Confidence 3568899999988777777778889999999999998652 222222222222111 13579999999999
Q sequence1 124 LRNDEHTRRELAKMKQE---PVKPEEGRDMANRI----------GAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 124 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
+.........+...... .........+.... ..+.++++|+.++.|+.++|..+.+.+++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Sa~~~~~v~~lf~~l~~~i~~ 347 (356)
T 4N0D_A 275 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIL 347 (356)
T ss_dssp HHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHccCCceeccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 98743211000000000 00000011111000 13568899999999999999998887654
##### No 317 #####
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>1SVS_A Guanine nucleotide-binding protein G(i), alpha-1; Gi alpha subunit, K180P mutation; HET: GNP; 1.5A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.46 E-value=3.1e-17 Score=122.19 Aligned_cols=129 Identities=16% Similarity=0.215 Sum_probs=77.9 Template_Neff=9.200
Q sequence1 55 QVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD----------SLENIPEKWTPEVKHF-CPNVPIILVGNKKD 123 (184)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D 123 (184)
...+.+||++|++.+...+..++..++++++|+|+.+.. .+......+...+... ....|+++|+||.|
T Consensus 192 ~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI~V~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piIlV~nK~D 271 (353)
T 1SVS_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEEeCCCccchhHHHHHcCCCCEEEEEEehhHcCccccCCcccchhHHHHHHHHHHHcChhhCCCeEEEEeccch
Confidence 356889999998887777777888999999999999865 2333222233222211 13689999999999
Q sequence1 124 LRNDEHTRRELAKMK---QEPVKPEEGRDMANR----------IGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 124 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----------~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
+.........+.... ...........+... ...+.++.+|+.++.++.++|.++.+.+++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~i~~ 344 (353)
T 1SVS_A 272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp HHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhcCCcccccCCcCCCCCHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 986421100000000 000000000000000 013568899999999999999998887754
##### No 318 #####
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>3DPU_A Rab family protein; RocCOR, G-domain, COR, GTP-binding, Nucleotide-binding; 2.9A {Chlorobaculum tepidum}
Probab=99.46 E-value=3.3e-17 Score=128.04 Aligned_cols=159 Identities=21% Similarity=0.255 Sum_probs=95.0 Template_Neff=10.500
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIE--------VDGKQVELALWDTAGLEDYDRLRPLS 76 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~-~~~--------~~~~~~~~~i~D~~g~~~~~~~~~~~ 76 (184)
....||+++|.+|+|||||++++..........++....... ... .+.....+.+||++|++.+...+..+
T Consensus 39 ~~~~ki~lvG~~~~GKTsL~~~L~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~f 118 (535)
T 3DPU_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred cceEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCccceeeeeeecCCCCcccCCCCCEEEEEEEeCCCCcchhhhhhhh
Confidence 467899999999999999999998776543222222111110 000 11245678999999999888888888
Q sequence1 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
+...+++++|+|+.+.... ..|...+....+..|+++|+||.|......... . ......... .
T Consensus 119 ~~~~~~~ilv~d~~~~~~~----~~wl~~i~~~~~~~~vilV~tk~D~~~~~~~~~--~----------~~~~~~~~~-~ 181 (535)
T 3DPU_A 119 MTRSSVYMLLLDSRTDSNK----HYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQ--K----------KINERFPAI-E 181 (535)
T ss_dssp HHSSEEEEEEECGGGGGGH----HHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCH--H----------HHHHHCGGG-T
T ss_pred cCCCcEEEEEEeCCChhhH----HHHHHHHHHHCCCCCEEEEEECcccCChhhcCH--H----------HHHHHHHHh-C
Confidence 8889999999998765322 344444444345689999999999876321100 0 000000111 1
Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
..++.+|+.++.++.+++..+.+.+
T Consensus 182 ~~~~~~s~~~~~~i~~l~~~i~~~~ 206 (535)
T 3DPU_A 182 NRFHRISCKNGDGVESIAKSLKSAV 206 (535)
T ss_dssp TCEEECCC-----CTTHHHHHHHHH
T ss_pred CcEEEecCCCCCCHHHHHHHHHHHH
Confidence 3577889999999998888776654
##### No 319 #####
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>4EKC_C Guanine nucleotide-binding protein G(q) subunit; GTP-binding protein fold, Regulator, G; HET: ALF, GDP; 7.4A {Mus musculus}
Probab=99.45 E-value=3.5e-17 Score=121.65 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=78.9 Template_Neff=9.600
Q sequence1 56 VELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI----------DSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDL 124 (184)
Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~ 124 (184)
..+.+||++|.+.+...+..++..++++++|+|+ .+...+......+....... ....|+++++||+|+
T Consensus 187 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~ 266 (347)
T 4EKC_C 187 VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 266 (347)
T ss_dssp CEEEEEEECCSGGGTTTGGGGCTTEEEEEEEEETTTTSCBCSSSSSCBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHH
T ss_pred eeEEEEEeCCCcccchhHHHhccCCCEEEEEEEhhhhCccccCCCCcchHHHHHHHHHHHHcCHHHhCCeEEEEeechHH
Confidence 5778999999888877888888899999999998 54445555444444433321 126899999999999
Q sequence1 125 RNDEHTRR--------------ELAKMKQEPVKPEEGRDMA-NRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 125 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
........ ....... .. ........ .....+.++++|++++.|+.++|.++.+.+++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l-~~~~~~~~~~~~~~i~~~~~Sa~~~~~i~~lf~~i~~~~~~ 338 (347)
T 4EKC_C 267 LEEKIMYSHLVDYFPEYDGPQRDAQAARE-FI-LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 338 (347)
T ss_dssp HHHHTTTSCGGGTSTTCCSCSSCHHHHHH-HH-HHHHHTSCCCSSSCCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchHHhCCCCCCCcCCHHHHHH-HH-HHHHHhcCCCCCCeEEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 86421000 0000000 00 00000000 00123568899999999999999998887653
##### No 320 #####
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>1ZCB_A G alpha i/13; GTP-binding, Lipoprotein, Membrane, Transducer, SIGNALING; HET: GDP; 2.0A {Mus musculus} SCOP: a.66.1.1, c.37.1.8
Probab=99.45 E-value=3.7e-17 Score=122.15 Aligned_cols=128 Identities=19% Similarity=0.139 Sum_probs=50.1 Template_Neff=9.700
Q sequence1 56 VELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD----------SLENIPEKWTPEVKHFC-PNVPIILVGNKKDL 124 (184)
Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~~~~vv~nK~D~ 124 (184)
..+.+||++|++.+...|..++..++++++|+|+++.. .+......+........ ...|+++|+||.|+
T Consensus 201 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iilv~nK~D~ 280 (362)
T 1ZCB_A 201 VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280 (362)
T ss_dssp EEEEEEEECCCTSCTT--------------CC------EEEETEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHH
T ss_pred EEEEEEeCCCCcchHHHHHHHhcCCCEEEEEEehhhcchhccCCCCCCCHHHHHHHHHHHHhCcchhcCCEEEEeechhH
Confidence 56779999999888778888889999999999999853 23333233333322211 26889999999998
Q sequence1 125 RNDEHTRRELAKMKQEP----VKPEEGRDMAN----------RIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 125 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----------~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
................. ........+.. ....+.++++|+.++.|+.++|.++.+.+++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~Sa~~~~~i~~lf~~i~~~i~~ 353 (362)
T 1ZCB_A 281 LEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHHT-TTCCGGTCT----------TCCHHHHHHH---------HTTEEEECCTTCHHH----------HHHH
T ss_pred HHHHHhcCCHHHhCCCCCCCCCCHHHHHHHHHHHHHHHccCccCCceEEEEeeCCChHHHHHHHHHHHHHHHH
Confidence 75321110000000000 00001111110 1122457889999999999999988877653
##### No 321 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>5M7H_A GTPase Der; GTPase, EngA, HYDROLASE; HET: PO4, GNP; 3.15A {Bacillus subtilis (strain 168)}
Probab=99.45 E-value=3.9e-17 Score=124.42 Aligned_cols=164 Identities=16% Similarity=0.155 Sum_probs=97.4 Template_Neff=11.000
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV--PTVFENYVADIEVDGKQVELALWDTAGLED----------YD-R 71 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~-~ 71 (184)
.....+++++|.+|+|||||++++.......... +++...... ........+.+||++|... +. .
T Consensus 172 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~ 249 (436)
T 5M7H_A 172 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDT--SFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVL 249 (436)
T ss_dssp CTTCEEEEEECSSSSSHHHHHHHHHHSTTEECCC---CCTTCSSE--EEEETTEEEEESCSHHHHHBTTBCCSCHHHHHH
T ss_pred ccceEEEEEECCCCCChHHHHHHHhCCCeeEeeCCCCCccccEEE--EEEECCEEEEEEcCCCccCCCccccchHHHHHH
Confidence 3456899999999999999999998765432211 111111111 1222345789999999532 11 1
Q sequence1 72 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA 151 (184)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (184)
........+|++++|+|.++. +......+....... ..|+++|+||+|+....... .... ........
T Consensus 250 ~~~~~~~~~d~ii~v~d~~~~--~~~~~~~~~~~~~~~--~~piilv~nK~D~~~~~~~~--~~~~------~~~~~~~~ 317 (436)
T 5M7H_A 250 RALKAIDRSEVVAVVLDGEEG--IIEQDKRIAGYAHEA--GKAVVIVVNKWDAVDKDEST--MKEF------EENIRDHF 317 (436)
T ss_dssp HHHHHHHHCSEEEEEEETTTB--CCHHHHHHHHHHHHH--TCEECEEEECTTTSCCCSSC--HHHH------HHHHHHHC
T ss_pred HHHHHHhhCCEEEEEeeCCCC--CcHHHHHHHHHHHHc--CCeEEEEEecchhcCCChHh--HHHH------HHHHHHHC
Confidence 122345678999999988753 222223333333322 58999999999998743210 0000 00001111
Q sequence1 152 NRIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 152 ~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
.......++++||.++.|+.+++.++.+.+.
T Consensus 318 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 348 (436)
T 5M7H_A 318 QFLDYAPILFMSALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp CSCSSSCEEECCTTTCCSGGGHHHHHHHHHH
T ss_pred cccCCCCEEEecCCCCcchHhHHHHHHHHHH
Confidence 1222367889999999999999988776553
##### No 322 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4EKD_A Guanine nucleotide-binding protein G(q) subunit; GTP-binding, Regulator of G protein; HET: GDP, MES; 2.71A {Mus musculus}
Probab=99.45 E-value=4.4e-17 Score=121.13 Aligned_cols=128 Identities=18% Similarity=0.217 Sum_probs=79.0 Template_Neff=9.600
Q sequence1 56 VELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI----------DSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDL 124 (184)
Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~-~~~~~~vv~nK~D~ 124 (184)
..+.+||++|+..+...+..++..++++++|+|+ .+...+......+..+..... ...|+++++||.|+
T Consensus 187 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~nK~D~ 266 (347)
T 4EKD_A 187 VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 266 (347)
T ss_dssp CEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEEGGGGGCBCTTSSSCBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHH
T ss_pred EEEEEEECCCCcchHHHHHHHhcCCCEEEEEEehHHhcccCCCCCCCChHHHHHHHHHHHHhChhhcCCCEEEEEechHH
Confidence 5788999999888877888888899999999998 544445444444444333221 26899999999998
Q sequence1 125 RNDEHTRREL----AKMKQEPVKPEEGRDM--------A-NRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 125 ~~~~~~~~~~----~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
.........+ ...............+ . .....+.++++|+.++.|+.++|.++.+.+++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~i~~~~~~ 338 (347)
T 4EKD_A 267 LEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 338 (347)
T ss_dssp HHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHTTCCCSSCCCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCeeeEEEeeCCChHHHHHHHHHHHHHHHH
Confidence 7642100000 0000000000000000 0 00123678899999999999999999887754
##### No 323 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3L82_B Telomeric repeat-binding factor 1, F-box; TRFH domain, helix, GTPase domain; 2.4A {Homo sapiens}
Probab=99.44 E-value=4.7e-17 Score=114.16 Aligned_cols=168 Identities=8% Similarity=-0.010 Sum_probs=91.1 Template_Neff=9.500
Q sequence1 5 SPIRKKLVIVGDGACGKT-CLLIVNSKDQFP-E-VYVPTV-FENYVA--DIEVDG-----------------K----QVE 57 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKt-sli~~~~~~~~~-~-~~~~t~-~~~~~~--~~~~~~-----------------~----~~~ 57 (184)
..+.+||+++|+...||| ||+.++...... . ...+++ ...... .....+ . .-.
T Consensus 13 ~~~~~ki~~~G~gl~~~tt~l~~~l~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~~~~~ 92 (227)
T 3L82_B 13 IQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEHT 92 (227)
T ss_dssp CCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC-------------
T ss_pred cCCCCeEEeeCCChhhcChhHHHHHhcCCCcccccCCCCCccCcccCcEEEEeCCCcEEEEEEEEecCHHHHHHHHHHhh
Confidence 457899999999999986 888888754221 0 011110 000000 000000 0 012
Q sequence1 58 LALWD-----------TAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSL--ENIPEKWTPEVKH--FCPNVPIILVGNK- 121 (184)
Q Consensus 58 ~~i~D-----------~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~--~~~~~~~~vv~nK- 121 (184)
..+|| .+|++.++..|..++..+|++++|+|.++...+ ....+.+...+.. .....|+++++||
T Consensus 93 ~~~~~l~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~iIfVvD~s~~~~~~~~~~~~~L~~~l~~~~~~~~~pilvl~NKk 172 (227)
T 3L82_B 93 SAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCIS 172 (227)
T ss_dssp ------------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEES
T ss_pred hHHhHhhhcccCCCCCcCCccchHHHHHHHhccCCEEEEEEecccccccChHHHHHHHHHHhccccCcCCCCEEEEEeCC
Confidence 34455 378888888999999999999999999987666 4444444444432 2246899999996
Q sequence1 122 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183 (184)
Q Consensus 122 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~ 183 (184)
.|+...... ..+.+ ..........+.++++||.++.|+.+.|.|+.+.+.+
T Consensus 173 ~d~~~~~~~-~~i~~----------~l~l~~~~~~~~v~~~Sa~~g~gv~e~~~~L~~~i~~ 223 (227)
T 3L82_B 173 QGDVKRMPC-FYLAH----------ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp STTSCBCCH-HHHHH----------HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred CCCcCCCCH-HHHHH----------HcCHhHcCCCcEEEECCCCCCccHHHHHHHHHHHHHH
Confidence 665332111 11100 0000000112468899999999999999999887653
##### No 324 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6S6A_A Ras-related GTP-binding protein A, Ras-related; small GTPases, mTORC1 activator, roadblock; HET: GTP, GDP, 9JE; 2.63A {Homo sapiens}
Probab=99.44 E-value=5e-17 Score=118.84 Aligned_cols=169 Identities=14% Similarity=0.286 Sum_probs=97.9 Template_Neff=10.900
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV--PTVFENYVADIEVDGKQVELALWDTAGLEDY-----DRLRPL 75 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~ 75 (184)
+......+|+++|..|+||||+++++.......... .++........... ....+.+||+||...+ ...+..
T Consensus 2 ~~~~~~~~I~vvG~~~sGKStli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~D~pG~~~~~~~~~~~~~~~ 80 (313)
T 6S6A_A 2 PNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-GNLVLNLWDCGGLDTFMENYFTSQRDN 80 (313)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSEEEEEEEEB-TTEEEEEEEECCSHHHHHHHHTTTHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHhcCCCccccCCCcccceeEEEeeeec-CceEEEEEECCCcHHHHHhhhHhhHHH
Confidence 345678999999999999999999998765432211 11111111111111 2346899999998765 555666
Q sequence1 76 SYPDTDVILMCFSIDSPDSLENIPEKWTPEV---KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN 152 (184)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~---~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
++..+|++++|++++++...... ..+...+ .......|+++|+||+|+............ . ......+..
T Consensus 81 ~~~~~d~ii~v~d~~~~~~~~~~-~~l~~~l~~~~~~~~~~~vilv~nk~D~~~~~~~~~~~~~-~-----~~~~~~~~~ 153 (313)
T 6S6A_A 81 IFRNVEVLIYVFDVESRELEKDM-HYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKE-R-----EEDLRRLSR 153 (313)
T ss_dssp HHTTCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCTTTHHHHHHH-H-----HHHHHHTTT
T ss_pred hhccCCEEEEEEecCChhHHHHH-HHHHHHHHHHHHhCCCCcEEEEEEcccCCCHHHHHHHHHH-H-----HHHHHHHhc
Confidence 77899999999999875543332 2222222 111236889999999999764211110000 0 011111111
Q sequence1 153 RIGAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 153 ~~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
.. ...++.+|+.+ .++...+.++...+
T Consensus 154 ~~-~~~~~~~S~~~-~~~~~~~~~~~~~~ 180 (313)
T 6S6A_A 154 PL-ECACFRTSIWD-ETLYKAWSSIVYQL 180 (313)
T ss_dssp TS-CEEEEEECTTS-THHHHHHHHHHHTT
T ss_pred CC-ceEEEEcccCC-ccHHHHHHHHHHHH
Confidence 11 24677788877 57777776655543
##### No 325 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6S6D_A Ras-related GTP-binding protein A, Ras-related; small GTPases, mTORC1 activator, roadblock; HET: GTP, GDP, 9JE; 2.5A {Homo sapiens}
Probab=99.44 E-value=5e-17 Score=118.84 Aligned_cols=169 Identities=14% Similarity=0.286 Sum_probs=97.9 Template_Neff=10.900
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV--PTVFENYVADIEVDGKQVELALWDTAGLEDY-----DRLRPL 75 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~ 75 (184)
+......+|+++|..|+||||+++++.......... .++........... ....+.+||+||...+ ...+..
T Consensus 2 ~~~~~~~~I~vvG~~~sGKStli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~D~pG~~~~~~~~~~~~~~~ 80 (313)
T 6S6D_A 2 PNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-GNLVLNLWDCGGLDTFMENYFTSQRDN 80 (313)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHSCCCGGGGGGCCCCCSEEEEEEEEB-TTEEEEEEEECCCHHHHHHHTTTTHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHhcCCCccccCCCcccceeEEEeeeec-CceEEEEEECCCcHHHHHhhhHhhHHH
Confidence 345678999999999999999999998765432211 11111111111111 2346899999998765 555666
Q sequence1 76 SYPDTDVILMCFSIDSPDSLENIPEKWTPEV---KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN 152 (184)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~---~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
++..+|++++|++++++...... ..+...+ .......|+++|+||+|+............ . ......+..
T Consensus 81 ~~~~~d~ii~v~d~~~~~~~~~~-~~l~~~l~~~~~~~~~~~vilv~nk~D~~~~~~~~~~~~~-~-----~~~~~~~~~ 153 (313)
T 6S6D_A 81 IFRNVEVLIYVFDVESRELEKDM-HYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKE-R-----EEDLRRLSR 153 (313)
T ss_dssp HHTTEEEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHH-H-----HHHHHHHTT
T ss_pred hhccCCEEEEEEecCChhHHHHH-HHHHHHHHHHHHhCCCCcEEEEEEcccCCCHHHHHHHHHH-H-----HHHHHHHhc
Confidence 77899999999999875543332 2222222 111236889999999999764211110000 0 011111111
Q sequence1 153 RIGAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 153 ~~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
.. ...++.+|+.+ .++...+.++...+
T Consensus 154 ~~-~~~~~~~S~~~-~~~~~~~~~~~~~~ 180 (313)
T 6S6D_A 154 PL-ECACFRTSIWD-ETLYKAWSSIVYQL 180 (313)
T ss_dssp TS-CCEEEECCTTS-THHHHHHHHHHHTT
T ss_pred CC-ceEEEEcccCC-ccHHHHHHHHHHHH
Confidence 11 24677788877 57777776655543
##### No 326 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6S6D_B Ras-related GTP-binding protein A, Ras-related; small GTPases, mTORC1 activator, roadblock; HET: 9JE, GTP, GDP; 2.5A {Homo sapiens}
Probab=99.44 E-value=5e-17 Score=118.84 Aligned_cols=169 Identities=14% Similarity=0.286 Sum_probs=97.9 Template_Neff=10.900
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV--PTVFENYVADIEVDGKQVELALWDTAGLEDY-----DRLRPL 75 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~ 75 (184)
+......+|+++|..|+||||+++++.......... .++........... ....+.+||+||...+ ...+..
T Consensus 2 ~~~~~~~~I~vvG~~~sGKStli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~D~pG~~~~~~~~~~~~~~~ 80 (313)
T 6S6D_B 2 PNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-GNLVLNLWDCGGLDTFMENYFTSQRDN 80 (313)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHSCCCSGGGSSCCCCCSEECCEEEET-TTEEEEEEEECCSHHHHHHHHTTTHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHhcCCCccccCCCcccceeEEEeeeec-CceEEEEEECCCcHHHHHhhhHhhHHH
Confidence 345678999999999999999999998765432211 11111111111111 2346899999998765 555666
Q sequence1 76 SYPDTDVILMCFSIDSPDSLENIPEKWTPEV---KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN 152 (184)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~---~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
++..+|++++|++++++...... ..+...+ .......|+++|+||+|+............ . ......+..
T Consensus 81 ~~~~~d~ii~v~d~~~~~~~~~~-~~l~~~l~~~~~~~~~~~vilv~nk~D~~~~~~~~~~~~~-~-----~~~~~~~~~ 153 (313)
T 6S6D_B 81 IFRNVEVLIYVFDVESRELEKDM-HYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKE-R-----EEDLRRLSR 153 (313)
T ss_dssp HHSSEEEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCGGGHHHHHHH-H-----HHHHHHHTT
T ss_pred hhccCCEEEEEEecCChhHHHHH-HHHHHHHHHHHHhCCCCcEEEEEEcccCCCHHHHHHHHHH-H-----HHHHHHHhc
Confidence 77899999999999875543332 2222222 111236889999999999764211110000 0 011111111
Q sequence1 153 RIGAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 153 ~~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
.. ...++.+|+.+ .++...+.++...+
T Consensus 154 ~~-~~~~~~~S~~~-~~~~~~~~~~~~~~ 180 (313)
T 6S6D_B 154 PL-ECACFRTSIWD-ETLYKAWSSIVYQL 180 (313)
T ss_dssp TS-CCEEEEECTTS-THHHHHHHHHHHTT
T ss_pred CC-ceEEEEcccCC-ccHHHHHHHHHHHH
Confidence 11 24677788877 57777776655543
##### No 327 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2XTZ_C GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT; HYDROLASE, G-PROTEIN SIGNALING, SELF-ACTIVATION, RAS-LIKE; HET: SO4, CSS, GSP; 2.34A {ARABIDOPSIS THALIANA}
Probab=99.44 E-value=5.3e-17 Score=121.02 Aligned_cols=128 Identities=15% Similarity=0.230 Sum_probs=75.6 Template_Neff=9.200
Q sequence1 55 QVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKD 123 (184)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~~~~vv~nK~D 123 (184)
.+.+.+||++|+..+...+..++..++++++|+|++ +..++......+..+..... ...|+++++||.|
T Consensus 182 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~dls~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~nK~D 261 (354)
T 2XTZ_C 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 261 (354)
T ss_dssp ---EEEEECCCSGGGGGGSGGGCTTCSEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHH
T ss_pred CcEEEEEEcCCCcchHHHHHHhcCCCCEEEEEEEhHHhccccccCcccChHHHHHHHHHHHHcChhhcCCeEEEEeccHH
Confidence 456889999998888777888888999999999998 44445444444443332221 2679999999999
Q sequence1 124 LRNDEHTRREL------AKMKQ---EPVKPEEGRDMANR-I--------------GAFGYMECSAKTKDGVREVFEMATR 179 (184)
Q Consensus 124 ~~~~~~~~~~~------~~~~~---~~~~~~~~~~~~~~-~--------------~~~~~~~~s~~~~~~i~~~~~~~~~ 179 (184)
+.......... ..... ..........+... + ..+.++++||.++.|+.++|.++.+
T Consensus 262 l~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~i~~ 341 (354)
T 2XTZ_C 262 IFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDE 341 (354)
T ss_dssp HHHHHHTTSCGGGSGGGTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHTCCGGGTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcchhhhccccCCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCcCceEEEEEEecCCHHHHHHHHHHHHH
Confidence 97642111000 00000 00000001111000 0 1123448999999999999999888
Q sequence1 180 AAL 182 (184)
Q Consensus 180 ~~~ 182 (184)
.+.
T Consensus 342 ~i~ 344 (354)
T 2XTZ_C 342 TLR 344 (354)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
##### No 328 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4ARZ_A GTP-BINDING PROTEIN GTR1, GTP-BINDING PROTEIN; HYDROLASE, GTPASE, CELL GROWTH; HET: GTP, GDP; 3.1A {SACCHAROMYCES CEREVISIAE}
Probab=99.43 E-value=6.1e-17 Score=118.39 Aligned_cols=170 Identities=16% Similarity=0.259 Sum_probs=95.6 Template_Neff=10.600
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGLEDYDR-----LRPL 75 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~ 75 (184)
|.....++|+++|..|+|||++++.+......... ...+.......... .....+.+||+||+..+.. .+..
T Consensus 1 ~~~~~~~ki~l~G~~~sGKSsl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~D~pG~~~~~~~~~~~~~~~ 79 (310)
T 4ARZ_A 1 MSSNNRKKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF-LGNMTLNLWDCGGQDVFMENYFTKQKDH 79 (310)
T ss_dssp ---CCEEEEEEEECTTSSHHHHHHHHHSCCCSGGGGGGCCCCSEEEEEEEE-TTTEEEEEEEECCCHHHHHHHHTTTHHH
T ss_pred CCcCCCeEEEEECCCCCCHHHHHHHHhcCCChhhhccccceeeeEEEEeEe-cCCeEEEEEECCCchHHHHhhhHhcHhh
Confidence 45677899999999999999999999875332111 11111111111111 1245789999999876543 4566
Q sequence1 76 SYPDTDVILMCFSIDSPDSLENIPEKWTPE---VKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN 152 (184)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~---~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
.+..+|++++|+|+++....... ..+... +....+..|+++++||+|+............... .......
T Consensus 80 ~~~~~d~li~V~d~~~~~~~~~~-~~~~~~l~~l~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~------~l~~~~~ 152 (310)
T 4ARZ_A 80 IFQMVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMK------NLSETSS 152 (310)
T ss_dssp HTSSCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECTTSSCHHHHHHHHHHHHH------HHHHHHH
T ss_pred hccccCEEEEEEeCCChhHHHHH-HHHHHHHHHHHHHCCCCcEEEEEEcccccCHhhHHHHHHHHHH------HHHhhcc
Confidence 67889999999999876544333 222222 2222246899999999999864321111111000 0001111
Q sequence1 153 --RIGAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 153 --~~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
......++.+|+.++ ++.+.+..++..+
T Consensus 153 ~~~~~~~~~~~~S~~~~-~~~~~~~~~~~~~ 182 (310)
T 4ARZ_A 153 EFGFPNLIGFPTSIWDE-SLYKAWSQIVCSL 182 (310)
T ss_dssp HTSCCSCEEEEECTTST-HHHHHHHHHHTTS
T ss_pred ccCCCceEEEecccCch-HHHHHHHHHHHHH
Confidence 111246788888776 5555555555443
##### No 329 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6XRS_C GTPase Der; GTPase, KH domain, National Institute; HET: GDP; 2.8A {Neisseria gonorrhoeae (strain NCCP11945)}
Probab=99.43 E-value=6.2e-17 Score=124.05 Aligned_cols=162 Identities=13% Similarity=0.130 Sum_probs=91.1 Template_Neff=11.000
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY----------DR-LRP 74 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~-~~~ 74 (184)
....+|+++|.+++|||||++++.............................+.+||+||.... .. ...
T Consensus 189 ~~~~~i~iiG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~~~ 268 (458)
T 6XRS_C 189 AKHPVFAVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAM 268 (458)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHHHHTTC---------CEEEEEETTEEEEEECC---------------CCHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHcCCCccEeeCCCCCccceEEEEEEECCeEEEEEECCCCcCCCCcchhHHHHHHHHHH
Confidence 5567999999999999999999987653221111111111111122233457899999994321 11 133
Q sequence1 75 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI 154 (184)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
.+...+|++++|+|.++.. ......+...... ...|+++|+||+|+....... .... .....+ ...
T Consensus 269 ~~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~-~~~~--------~~~~~~-~~~ 334 (458)
T 6XRS_C 269 QAVEAANVAVLVLDAQQDI--ADQDATIAGFALE--AGRALVVAVNKWDGISEERRE-QVKR--------DISRKL-YFL 334 (458)
T ss_dssp HHHHHCSEEEEEEETTSCC--CHHHHHHHHHHHH--TTCEEEEEEECGGGCCHHHHH-HHHH--------HHHHHC-GGG
T ss_pred HHHHhCCEEEEEeeCCCCc--hHHHHHHHHHHHH--hCCcEEEEEecccCCCHHHHH-HHHH--------HHHHHh-hcC
Confidence 3457899999999998632 2211122222221 258999999999997643211 1100 000001 111
Q sequence1 155 GAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 155 ~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
....++.+|+.++.++.+++.++...+
T Consensus 335 ~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 361 (458)
T 6XRS_C 335 DFAKFHFISALKERGIDGLFESIQAAY 361 (458)
T ss_dssp TTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CcCcEEEcccCCccChhHHHHHHHHHH
Confidence 236788999999999999988776654
##### No 330 #####
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>6XRS_D GTPase Der; GTPase, KH domain, National Institute; HET: GDP; 2.8A {Neisseria gonorrhoeae (strain NCCP11945)}
Probab=99.43 E-value=6.2e-17 Score=124.05 Aligned_cols=162 Identities=13% Similarity=0.130 Sum_probs=91.3 Template_Neff=11.000
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY----------DR-LRP 74 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~-~~~ 74 (184)
....+|+++|.+++|||||++++.............................+.+||+||.... .. ...
T Consensus 189 ~~~~~i~iiG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~~~ 268 (458)
T 6XRS_D 189 AKHPVFAVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAM 268 (458)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHTSTTEEECC--------CEEEEEETTEEEEEECC---------------CCHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHcCCCccEeeCCCCCccceEEEEEEECCeEEEEEECCCCcCCCCcchhHHHHHHHHHH
Confidence 5567999999999999999999987653221111111111111122233457899999994321 11 133
Q sequence1 75 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI 154 (184)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
.+...+|++++|+|.++.. ......+...... ...|+++|+||+|+....... .... .....+ ...
T Consensus 269 ~~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~-~~~~--------~~~~~~-~~~ 334 (458)
T 6XRS_D 269 QAVEAANVAVLVLDAQQDI--ADQDATIAGFALE--AGRALVVAVNKWDGISEERRE-QVKR--------DISRKL-YFL 334 (458)
T ss_dssp HHHHHCSEEEEEEETTSCC--CHHHHHHHHHHHH--TTCEEEEEEECGGGCCHHHHH-HHHH--------HHHHHT-GGG
T ss_pred HHHHhCCEEEEEeeCCCCc--hHHHHHHHHHHHH--hCCcEEEEEecccCCCHHHHH-HHHH--------HHHHHh-hcC
Confidence 3457899999999998632 2211122222221 258999999999997643211 1100 000001 111
Q sequence1 155 GAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 155 ~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
....++.+|+.++.++.+++.++...+
T Consensus 335 ~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 361 (458)
T 6XRS_D 335 DFAKFHFISALKERGIDGLFESIQAAY 361 (458)
T ss_dssp TTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CcCcEEEcccCCccChhHHHHHHHHHH
Confidence 236788999999999999988776654
##### No 331 #####
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>1NRJ_B Signal recognition particle receptor alpha; Signal recognition particle, Transmembrane, Receptor; HET: GTP; 1.7A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.43 E-value=6.7e-17 Score=112.38 Aligned_cols=119 Identities=16% Similarity=0.180 Sum_probs=77.6 Template_Neff=10.800
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPD---- 79 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~---- 79 (184)
......+|+++|.+++|||+|++++............ ........ ....+.+||+||+..+...+..++..
T Consensus 8 ~~~~~~~i~l~G~~~~GKssl~~~l~~~~~~~~~~~~---~~~~~~~~--~~~~~~l~D~pg~~~~~~~~~~~~~~~~~~ 82 (218)
T 1NRJ_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ---EPLSAADY--DGSGVTLVDFPGHVKLRYKLSDYLKTRAKF 82 (218)
T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCS---SCEEETTG--GGSSCEEEECCCCGGGTHHHHHHHHHHGGG
T ss_pred ccCCCCeEEEECCCCCCHHHHHHHHccCCCCCcccCC---CCceEEee--CCCeEEEEeCCCCHHHHHHHHHHHHhhhcc
Confidence 3456789999999999999999999876543211110 00111111 23467999999998776666655555
Q sequence1 80 TDVILMCFSID-SPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRND 127 (184)
Q Consensus 80 ~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~ 127 (184)
++++++|+|+. ....+......+...+... ....|+++++||+|+...
T Consensus 83 ~~~vi~vvd~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~p~~iv~nK~D~~~~ 135 (218)
T 1NRJ_B 83 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 135 (218)
T ss_dssp EEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred ccEEEEEeeCCCCHHHHHHHHHHHHHHHHHhhhhcccCCeEEEEEechhcCCC
Confidence 89999999998 3434444433343333221 236899999999999763
##### No 332 #####
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>2XTZ_A GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT; HYDROLASE, G-PROTEIN SIGNALING, SELF-ACTIVATION, RAS-LIKE; HET: SO4, GSP; 2.34A {ARABIDOPSIS THALIANA}
Probab=99.43 E-value=7.4e-17 Score=120.25 Aligned_cols=129 Identities=14% Similarity=0.188 Sum_probs=76.3 Template_Neff=9.200
Q sequence1 55 QVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKD 123 (184)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D 123 (184)
.+.+.+||++|+..+...|..++..++++++|+|+. +...+......+..+.... ....|+++++||.|
T Consensus 182 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~dls~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~piilv~nK~D 261 (354)
T 2XTZ_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 261 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHH
T ss_pred CcEEEEEEcCCCcchHHHHHHhcCCCCEEEEEEEhHHhccccccCcccChHHHHHHHHHHHHcChhhcCCeEEEEeccHH
Confidence 456889999999888888888888999999999998 4444444433333333221 12579999999999
Q sequence1 124 LRNDEHTRREL------AKMKQ---EPVKPEEGRDMANR---------------IGAFGYMECSAKTKDGVREVFEMATR 179 (184)
Q Consensus 124 ~~~~~~~~~~~------~~~~~---~~~~~~~~~~~~~~---------------~~~~~~~~~s~~~~~~i~~~~~~~~~ 179 (184)
+.......... ..... ..........+... ...+.++++||+++.|+.++|.++.+
T Consensus 262 l~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f~~v~~ 341 (354)
T 2XTZ_A 262 IFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDE 341 (354)
T ss_dssp HHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcchhhhccccCCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCcCceEEEEEEecCCHHHHHHHHHHHHH
Confidence 97642111000 00000 00000011111000 01123448999999999999999888
Q sequence1 180 AALQ 183 (184)
Q Consensus 180 ~~~~ 183 (184)
.+.+
T Consensus 342 ~i~~ 345 (354)
T 2XTZ_A 342 TLRR 345 (354)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
##### No 333 #####
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>4FID_B G protein alpha subunit; RAS-LIKE DOMAIN, ALL-HELICAL DOMAIN, GTP; HET: MSE, GDP, MLY; 2.62A {Entamoeba histolytica}
Probab=99.42 E-value=8.4e-17 Score=119.33 Aligned_cols=128 Identities=15% Similarity=0.152 Sum_probs=69.8 Template_Neff=9.700
Q sequence1 56 VELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDL 124 (184)
Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~~~~vv~nK~D~ 124 (184)
+.+.+||++|+..+...|..++..++++++|+|++ +..++......+........ ...|+++++||.|+
T Consensus 161 ~~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~nK~Dl 240 (340)
T 4FID_B 161 IPFHLIDVGGQRSERKKWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDL 240 (340)
T ss_dssp EEEEEEEEC---------CCCTTSCSEEEEEEEGGGTTCC------CCHHHHHHHHHHTTTTCGGGTTSEEEEEEECHHH
T ss_pred eeEEEEEcCCCcccHHHHHHhhcCCCEEEEEEEhhHhcchhhcCCCcccHHHHHHHHHHHHcCHHHcCCeEEEEccchHH
Confidence 46789999999888888888889999999999999 44444444443433332211 25789999999999
Q sequence1 125 RNDEHTRRELAKMKQEP---VKPEEGRD-----MA---------------------NRIGAFGYMECSAKTKDGVREVFE 175 (184)
Q Consensus 125 ~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~---------------------~~~~~~~~~~~s~~~~~~i~~~~~ 175 (184)
................. .....+.. +. .....+.++++||+++.|+..+|.
T Consensus 241 ~~~k~~~~~l~~~f~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~~f~ 320 (340)
T 4FID_B 241 FEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFM 320 (340)
T ss_dssp HHHHHHHSCGGGTSTTCCCCSCHHHHHHHHHHHHHSSSCEEEC------------CCSSSSEEEEECCTTCHHHHHHHHH
T ss_pred HHHHhccCCHHHhCCCCCCCCcHHHHHHHHHHHHHHHhhhhhhcccCCCCCCcCCCCCCceEEEEeeecCCHHHHHHHHH
Confidence 76421110000000000 00000000 00 001224577999999999999998
Q sequence1 176 MATRAALQ 183 (184)
Q Consensus 176 ~~~~~~~~ 183 (184)
.+.+.+++
T Consensus 321 ~~~~~i~~ 328 (340)
T 4FID_B 321 LAVDVIMK 328 (340)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776653
##### No 334 #####
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>2DBY_A GTP-binding protein; GTP-binding protein, GDP, Structural Genomics; HET: GDP; 1.76A {Thermus thermophilus}
Probab=99.42 E-value=8.6e-17 Score=120.48 Aligned_cols=85 Identities=15% Similarity=0.146 Sum_probs=54.1 Template_Neff=9.600
Q sequence1 9 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT-VFENYVADIEVDGKQV-------------------ELALWDTAGLED 68 (184)
Q Consensus 9 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~-------------------~~~i~D~~g~~~ 68 (184)
++|+++|.+++|||||++++..........+. +.......+...+..+ .+.+||+||...
T Consensus 2 ~~i~ivG~~~~GKSTl~n~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~i~D~pG~~~ 81 (368)
T 2DBY_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCccccCCCCCcccceEEEEEeCCHHHHHHHHHcCCCCCCCCccCCeEEEEEcCCcCC
Confidence 68999999999999999999876542222111 1111111122222112 789999999754
Q sequence1 69 YDR-------LRPLSYPDTDVILMCFSIDSPD 93 (184)
Q Consensus 69 ~~~-------~~~~~~~~~~~~i~v~d~~~~~ 93 (184)
... .+..++..+|++++|+|+.+..
T Consensus 82 ~~~~~~~~~~~~l~~~~~ad~ii~Vvd~~~~~ 113 (368)
T 2DBY_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDP 113 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH
T ss_pred CccCCcchHHHHHHHHHhhCeEEEeeccCCCC
Confidence 322 2335567899999999988753
##### No 335 #####
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>1MKY_A Probable GTP-binding protein engA; GTPase, EngA, Der, KH-Domain, tandem; HET: GDP, PO4; 1.9A {Thermotoga maritima} SCOP: c.37.1.8, d.52.5.1
Probab=99.41 E-value=1e-16 Score=122.02 Aligned_cols=164 Identities=18% Similarity=0.129 Sum_probs=94.3 Template_Neff=11.400
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVP-TVFENYVADIEVDGKQVELALWDTAGLEDYDR----------- 71 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------- 71 (184)
....++++++|.+++|||||++++........ ..+ +........... ....+.+||++|......
T Consensus 177 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 254 (439)
T 1MKY_A 177 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI--DGRKYVFVDTAGLRRKSRVEPRTVEKYSN 254 (439)
T ss_dssp CCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEE--TTEEEEESSCSCC-----------CCSCC
T ss_pred hcCCCEEEEEcCCCCcHHHHHHHHhCCcccccCCCCCcccccEEEEEEE--CCEEEEEEECCCCcccccCChhHHHHHhH
Confidence 35678999999999999999999886543211 111 111111111111 224678999999764432
Q sequence1 72 -LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 150 (184)
Q Consensus 72 -~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
.....+..+|++++|+|+++..+.... .+....... ..|+++|+||+|+....... .... .......
T Consensus 255 ~~~~~~~~~~d~~ilvid~~~~~~~~~~--~~~~~~~~~--~~pviiv~nK~D~~~~~~~~--~~~~------~~~~~~~ 322 (439)
T 1MKY_A 255 YRVVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMERR--GRASVVVFNKWDLVVHREKR--YDEF------TKLFREK 322 (439)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSTTGGGC--HHHH------HHHHHHH
T ss_pred HHHHHHHhhCCEEEEEeeCCCCCCHHHH--HHHHHHHHh--CCCEEEEEechhcCCcchHH--HHHH------HHHHHHH
Confidence 122344678999999999875433221 223322222 48999999999998643210 0000 0000111
Q sequence1 151 ANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 151 ~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
........++++|++++.++.+++..+...+.
T Consensus 323 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 354 (439)
T 1MKY_A 323 LYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA 354 (439)
T ss_dssp CGGGTTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred hcccCCCCEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 11122357889999999999999988776543
##### No 336 #####
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>4DCU_A GTPase Der; GTPASE, ENGA, GDP, PROTEIN BINDING; HET: GDP; 2.0A {Bacillus subtilis}
Probab=99.41 E-value=1e-16 Score=122.89 Aligned_cols=166 Identities=15% Similarity=0.135 Sum_probs=84.0 Template_Neff=10.800
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD-----------RLR 73 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----------~~~ 73 (184)
.....+|+++|.+|+|||||++++.............................+.+||++|..... ...
T Consensus 192 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 271 (456)
T 4DCU_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp ----------CSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEEEET-----TGGGTTTBTTBCCCCSHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHhCCCccccCCCCCCcccceEEEEEECCEEEEEEECCCCCCCCCcccchhHHHHHHH
Confidence 345689999999999999999999876543211110001111111122234578999999953211 112
Q sequence1 74 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 153 (184)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
..+...++++++|+|.++. +......+...+.. ...|+++|+||+|+....... .... ..........
T Consensus 272 ~~~~~~~d~vv~v~d~~~~--~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~--~~~~------~~~~~~~~~~ 339 (456)
T 4DCU_A 272 LKAIDRSEVVAVVLDGEEG--IIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDEST--MKEF------EENIRDHFQF 339 (456)
T ss_dssp HHHHHHCSEEEEEEETTTC--CCHHHHHHHHHHHH--TTCEEEEEEECGGGSCCCSSH--HHHH------HHHHHHHCGG
T ss_pred HHHHhhCCEEEEEEeCCCC--CCHHHHHHHHHHHH--hCCCEEEEEeccccCCCCHHH--HHHH------HHHHHHHHHh
Confidence 2345678899999987753 22222233333322 258999999999998742210 0000 0000111111
Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
.....++++||.++.|+.+++.++...+.
T Consensus 340 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 368 (456)
T 4DCU_A 340 LDYAPILFMSALTKKRIHTLMPAIIKASE 368 (456)
T ss_dssp GTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred cCCCCEEEccCCCCCCHHHHHHHHHHHHH
Confidence 12367889999999999999988776554
##### No 337 #####
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>5KH0_B HydF; [FEFE]-HYDROGENASE MATURASE OXIDOREDUCTASE, OXIDOREDUCTASE; HET: SF4; 2.8A {Thermosipho melanesiensis (strain DSM 12029 / CIP 104789 / BI429)}
Probab=99.41 E-value=1.1e-16 Score=121.01 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=87.8 Template_Neff=9.800
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR-------LR 73 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~ 73 (184)
+....+.+|+++|..++|||||++++.+...... ..+++.......+... ....+.+||++|+..+.. .+
T Consensus 3 ~~~~~~~~I~v~G~~~~GKStLin~l~~~~~~~~~~~~~~t~d~~~~~~~~~-~~~~~~liDt~G~~~~~~~~~~~~~~~ 81 (396)
T 5KH0_B 3 ASGGFRKYIAITGRRNVGKSSFMNALIGQEVSIVSNVAGTTTDPVFKSMELS-PVGPITLIDTPGLDDVGELGIKRIKKA 81 (396)
T ss_dssp -----CEEEEEEECTTSCHHHHHHHHHTTCCCCC------------CEEECS-SSCEEEEEECC-------------CCT
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhCCCcCeecCCCceecccEEEeeeeC-CCCCEEEEECCCCCCCchHhHHHHHHH
Confidence 4567789999999999999999999987654221 1111111111122221 224678999999876543 34
Q sequence1 74 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 153 (184)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
...+..+|++++|++......... +...+... ..|+++++||+|+........ ....
T Consensus 82 ~~~~~~~d~vilvvd~~~~~~~~~----~~~~~~~~--~~piivv~NK~D~~~~~~~~~-----------------~~~~ 138 (396)
T 5KH0_B 82 KKSLYRADCGILIVDDIPGNFEEQ----IIKLFKEL--EIPYFIAINKIDTIDHENIEK-----------------EYKK 138 (396)
T ss_dssp HHHHTTCSEEEEEESSSCCHHHHH----HHHHHHHT--TCCEEEEECCTTTSCTTHHHH-----------------SSGG
T ss_pred HHHHhhCCEEEEEEeCCCCChHHH----HHHHHHHc--CCCEEEEEEccccCCHHHHHH-----------------HHHh
Confidence 455678899999999865322111 22222221 589999999999875321100 0111
Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
.+ ..++.+|+.++.++.++++++...+
T Consensus 139 ~~-~~~i~iSa~~g~~i~~l~~~i~~~~ 165 (396)
T 5KH0_B 139 YN-VPILKVSALKKIGFEKIGKTINSIL 165 (396)
T ss_dssp GC-SCEEECBTTTTBSGGGHHHHHHHHS
T ss_pred cC-CCEEEeecCcccCHHHHHHHHHHhC
Confidence 12 4688999999999999998876543
##### No 338 #####
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>5KH0_D HydF; [FEFE]-HYDROGENASE MATURASE OXIDOREDUCTASE, OXIDOREDUCTASE; HET: SF4; 2.8A {Thermosipho melanesiensis (strain DSM 12029 / CIP 104789 / BI429)}
Probab=99.41 E-value=1.1e-16 Score=121.01 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=83.5 Template_Neff=9.800
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR-------LR 73 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~ 73 (184)
+....+.+|+++|..++|||||++++.+...... ..+++.......+... ....+.+||++|+..+.. .+
T Consensus 3 ~~~~~~~~I~v~G~~~~GKStLin~l~~~~~~~~~~~~~~t~d~~~~~~~~~-~~~~~~liDt~G~~~~~~~~~~~~~~~ 81 (396)
T 5KH0_D 3 ASGGFRKYIAITGRRNVGKSSFMNALIGQEVSIVSNVAGTTTDPVFKSMELS-PVGPITLIDTPGLDDVGELGIKRIKKA 81 (396)
T ss_dssp -----CEEEEEEECSSSCHHHHHHHHHC------------------CEEECS-SSCEEEEEC--------------CHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhCCCcCeecCCCceecccEEEeeeeC-CCCCEEEEECCCCCCCchHhHHHHHHH
Confidence 4567789999999999999999999987654221 1111111111122221 224678999999876543 34
Q sequence1 74 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 153 (184)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
...+..+|++++|++......... +...+... ..|+++++||+|+........ ....
T Consensus 82 ~~~~~~~d~vilvvd~~~~~~~~~----~~~~~~~~--~~piivv~NK~D~~~~~~~~~-----------------~~~~ 138 (396)
T 5KH0_D 82 KKSLYRADCGILIVDDIPGNFEEQ----IIKLFKEL--EIPYFIAINKIDTIDHENIEK-----------------EYKK 138 (396)
T ss_dssp HHHHTTCSEEEEEESSSCCHHHHH----HHHHHHHT--TCCEEEEECCTTTSCTTHHHH-----------------SSST
T ss_pred HHHHhhCCEEEEEEeCCCCChHHH----HHHHHHHc--CCCEEEEEEccccCCHHHHHH-----------------HHHh
Confidence 455678899999999865322111 22222221 589999999999875321100 0111
Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
.+ ..++.+|+.++.++.++++++...+
T Consensus 139 ~~-~~~i~iSa~~g~~i~~l~~~i~~~~ 165 (396)
T 5KH0_D 139 YN-VPILKVSALKKIGFEKIGKTINSIL 165 (396)
T ss_dssp TC-SCEEECBTTTTBSGGGHHHHHHHHS
T ss_pred cC-CCEEEeecCcccCHHHHHHHHHHhC
Confidence 12 4688999999999999998876543
##### No 339 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3GEI_B tRNA modification GTPase mnmE (E.C.3.6.-.-); G protein, G domain, GTPase; HET: GCP; 3.4A {Chlorobium tepidum}
Probab=99.40 E-value=1.4e-16 Score=122.97 Aligned_cols=157 Identities=19% Similarity=0.213 Sum_probs=82.4 Template_Neff=8.500
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--------RPLS 76 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 76 (184)
...++|+++|.+|+|||||++++........ ..+.+..... ..........+.+||++|....... ....
T Consensus 231 ~~~~~V~ivG~~~aGKSSLln~L~~~~~~~v~~~~gtt~d~~-~~~~~~~~~~v~liDT~G~~~~~~~i~~~~~~~~~~~ 309 (476)
T 3GEI_B 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYI-EECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHHC-------------------CCEEEETTEEEEEEC--------------------CC
T ss_pred hcCcEEEEECCCcchHHHHHHHHhccchhhhcCCCCCCccee-EEEEEeCCcEEEEEeCCccccCCchhhHHHHHHHHHH
Confidence 4467999999999999999999987653221 1111111111 1111112457889999996543211 1124
Q sequence1 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
...+|++++|+|.++...... ...+...... .+..|+++|+||+|+....... . ...... ..
T Consensus 310 ~~~ad~vl~vvD~s~~~~~~~-~~~~~~l~~~-~~~~~iivV~nK~Dl~~~~~~~--~-------------~~~~~~-~~ 371 (476)
T 3GEI_B 310 MAEADLILYLLDLGTERLDDE-LTEIRELKAA-HPAAKFLTVANKLDRAANADAL--I-------------RAIADG-TG 371 (476)
T ss_dssp CSSCSEEEEEEETTTSSSCCT-THHHHHHHHH-CTTSEEEEEEECTTTCSSCHHH--H-------------HHHHHT-TT
T ss_pred hhcCCEEEEEeeCCCcCchHH-HHHHHHHHHh-CCCCCEEEEechhHHHhcHHHH--H-------------HHHHcC-CC
Confidence 457899999999876322211 1222222211 1357899999999998532110 0 000111 12
Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
..++.+|++++.|+++++..+.+.+
T Consensus 372 ~~~i~vSa~~g~gi~~L~~~i~~~~ 396 (476)
T 3GEI_B 372 TEVIGISALNGDGIDTLKQHMGDLV 396 (476)
T ss_dssp SCEEECBTTTTBSHHHHHHHHTTTT
T ss_pred CceEEeeccCCCCHHHHHHHHHHHH
Confidence 5688899999999999887766543
##### No 340 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2CXX_A Probable GTP-binding protein engB; GTP-binding protein, Structural Genomics, NPPSFA; HET: GDP; 1.7A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.40 E-value=1.4e-16 Score=108.13 Aligned_cols=157 Identities=15% Similarity=0.168 Sum_probs=89.6 Template_Neff=11.400
Q sequence1 9 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLE-----------DYD----RLR 73 (184)
Q Consensus 9 ~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-----------~~~----~~~ 73 (184)
.+|+++|+.++|||+|++++....+.....+..... . .. .....+.+||++|.. .+. ..+
T Consensus 2 ~~i~v~G~~~~GKtsl~~~l~~~~~~~~~~~~~~~~-~--~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2CXX_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK-I--IE--IEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS-C--EE--EEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCCCCCccee-E--EE--EeecCeEEEeeCCcccccCCCHHHHHHHHHHHHHHH
Confidence 579999999999999999998776543222111111 0 11 112256789999932 211 122
Q sequence1 74 PLSYPDTDVILMCFSIDSPDSLENIPEKWTP---------EVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVK 143 (184)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~---------~~~~-~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~ 143 (184)
......+|++++|+|........ ..|.. .... .....|+++++||.|+...... .........
T Consensus 77 ~~~~~~~d~~i~v~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nk~D~~~~~~~--~~~~~~~~~-- 149 (190)
T 2CXX_A 77 EDNAKNIDVAVLVVDGKAAPEII---KRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQE--VINFLAEKF-- 149 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHH---HHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHH--HHHHHHHHH--
T ss_pred HHccccCCEEEEEEcCCCcHHHH---HHHHHcCCCcccHHHHHHHHHcCCCEEEEEecHHHcccHHH--HHHHHHHhc--
Confidence 33456789999999987632211 11110 0111 1136789999999998753211 000000000
Q sequence1 144 PEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
....... ...++++|++++.|+.+++.++.+.+.
T Consensus 150 ----~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 183 (190)
T 2CXX_A 150 ----EVPLSEI-DKVFIPISAKFGDNIERLKNRIFEVIR 183 (190)
T ss_dssp ----TCCGGGH-HHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ----CCCHHHC-CCcEEecccccCCCHHHHHHHHHHHHH
Confidence 0000011 135889999999999999998887664
##### No 341 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4A9A_A RIBOSOME-INTERACTING GTPASE 1, TRANSLATION MACHINERY-ASSOCIATED; TRANSLATION, DRG-DFRP COMPLEX, RIBOSOME BINDING; 2.67A {SACCHAROMYCES CEREVISIAE}
Probab=99.40 E-value=1.5e-16 Score=119.46 Aligned_cols=155 Identities=15% Similarity=0.057 Sum_probs=95.6 Template_Neff=9.600
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-NYVADIEVDGKQVELALWDTAGLEDYD-------RLRPLSY 77 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~ 77 (184)
...++|+++|.+++|||||++++..........+.... ........ ....+.+||+||..... ......+
T Consensus 70 ~~~~~i~vvG~~~sGKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~~ 147 (376)
T 4A9A_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRY--KGAKIQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEE--TTEEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred CCceEEEEEecCCCCccHHHHHHhCCCCcccCCccccceeEEEEEEE--CCeEEEEEECCCcccCccCcchHHHHHHHHH
Confidence 34568999999999999999999876543221111111 11111111 24578999999976542 2222355
Q sequence1 78 PDTDVILMCFSIDSPDSLENIPEKWTP----------------------------------------------------- 104 (184)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~----------------------------------------------------- 104 (184)
..+|++++|+|++++.+.......|..
T Consensus 148 ~~~d~ii~v~D~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 227 (376)
T 4A9A_A 148 RTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEI 227 (376)
T ss_dssp HHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEE
T ss_pred hcCCEEEEEEeCCCchHHHHHHHHHHHHccccccCCCccceeeecccCCceeeeCCCcccCCHHHHHHHHHHcCCCCCEE
Confidence 788999999999886543221111111
Q sequence1 105 -------------EVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGV 170 (184)
Q Consensus 105 -------------~~~~-~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 170 (184)
.+.. .....|+++|+||+|+........ . .....++++|++++.|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~--------------~------~~~~~~~~~Sa~~~~~i 287 (376)
T 4A9A_A 228 AFRCDATVDDLIDVLEASSRRYMPAIYVLNKIDSLSIEELEL--------------L------YRIPNAVPISSGQDWNL 287 (376)
T ss_dssp EECSCCCHHHHHHHHTTTTCEEECEEEEEECGGGSCHHHHHH--------------H------TTSTTEEECCTTTCTTH
T ss_pred EEeCCCCHHHHHHHHHhcccccccEEEEEEcCCcCCHHHHHH--------------H------hcCCCeEEeeCCCCcCH
Confidence 0100 023589999999999876432100 0 12256888999999999
Q sequence1 171 REVFEMATRAAL 182 (184)
Q Consensus 171 ~~~~~~~~~~~~ 182 (184)
.+++.++.+.+.
T Consensus 288 ~~l~~~l~~~l~ 299 (376)
T 4A9A_A 288 DELLQVMWDRLN 299 (376)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHcC
Confidence 999888776653
##### No 342 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3GEE_A tRNA modification GTPase mnmE (E.C.3.6.-.-); G protein, GTPase, tRNA modification; HET: GDP, FON; 2.95A {Chlorobium tepidum}
Probab=99.40 E-value=1.6e-16 Score=122.71 Aligned_cols=157 Identities=18% Similarity=0.202 Sum_probs=82.4 Template_Neff=8.600
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY-VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--------RPLS 76 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 76 (184)
.+.++|+++|.+|+|||||++++......... .+.+..... ..........+.+||++|....... ....
T Consensus 231 ~~~~~V~ivG~~~aGKSTLln~L~~~~~~~v~~~~~tt~d~~-~~~~~~~~~~v~liDTaG~~~~~~~i~~~~~~~~~~~ 309 (476)
T 3GEE_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYI-EECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC--------------------CC
T ss_pred ccCcEEEEECCCcchHHHHHHHHhcccchhhcCCCCCCcceE-EEEEEeCCcEEEEecCcccccCChhhhHHHHHHHHHh
Confidence 44679999999999999999999876532211 111111111 1111122457899999996533211 1124
Q sequence1 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
...+|++++|+|.++...... ...+...... .+..|+++|+||+|+....... .. ..... ..
T Consensus 310 ~~~ad~il~VvD~s~~~~~~~-~~~l~~l~~~-~~~~~iivV~nK~Dl~~~~~~~--~~-------------~~~~~-~~ 371 (476)
T 3GEE_A 310 MAEADLILYLLDLGTERLDDE-LTEIRELKAA-HPAAKFLTVANKLDRAANADAL--IR-------------AIADG-TG 371 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGG-HHHHHHHHHH-CTTSEEEEEEECTTSCTTTHHH--HH-------------HHHHH-HT
T ss_pred hhcCCEEEEEeeCCCcccHHH-HHHHHHHHHh-CCCCCEEEEecchhHhhcHHHH--HH-------------HHHcC-CC
Confidence 457899999999886322211 1222222211 1357899999999998642210 00 00011 12
Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
..++.+|++++.|+++++..+.+.+
T Consensus 372 ~~~~~vSa~~g~gi~~l~~~i~~~~ 396 (476)
T 3GEE_A 372 TEVIGISALNGDGIDTLKQHMGDLV 396 (476)
T ss_dssp SCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred CceEEEEccCCCCHHHHHHHHHHHH
Confidence 5688899999999998887766543
##### No 343 #####
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>3GEI_A tRNA modification GTPase mnmE (E.C.3.6.-.-); G protein, G domain, GTPase; HET: GCP; 3.4A {Chlorobium tepidum}
Probab=99.40 E-value=1.6e-16 Score=122.71 Aligned_cols=157 Identities=18% Similarity=0.202 Sum_probs=82.4 Template_Neff=8.600
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY-VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL--------RPLS 76 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 76 (184)
.+.++|+++|.+|+|||||++++......... .+.+..... ..........+.+||++|....... ....
T Consensus 231 ~~~~~V~ivG~~~aGKSTLln~L~~~~~~~v~~~~~tt~d~~-~~~~~~~~~~v~liDTaG~~~~~~~i~~~~~~~~~~~ 309 (476)
T 3GEI_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYI-EECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHHC-------------------CCEEEETTEEEEEEC--------------------CC
T ss_pred ccCcEEEEECCCcchHHHHHHHHhcccchhhcCCCCCCcceE-EEEEEeCCcEEEEecCcccccCChhhhHHHHHHHHHh
Confidence 44679999999999999999999876532211 111111111 1111122457899999996533211 1124
Q sequence1 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
...+|++++|+|.++...... ...+...... .+..|+++|+||+|+....... .. ..... ..
T Consensus 310 ~~~ad~il~VvD~s~~~~~~~-~~~l~~l~~~-~~~~~iivV~nK~Dl~~~~~~~--~~-------------~~~~~-~~ 371 (476)
T 3GEI_A 310 MAEADLILYLLDLGTERLDDE-LTEIRELKAA-HPAAKFLTVANKLDRAANADAL--IR-------------AIADG-TG 371 (476)
T ss_dssp CSSCSEEEEEEETTTSSSCCT-THHHHHHHHH-CTTSEEEEEEECTTTCSSCHHH--HH-------------HHHHT-TT
T ss_pred hhcCCEEEEEeeCCCcccHHH-HHHHHHHHHh-CCCCCEEEEecchhHhhcHHHH--HH-------------HHHcC-CC
Confidence 457899999999886322211 1222222211 1357899999999998642210 00 00011 12
Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
..++.+|++++.|+++++..+.+.+
T Consensus 372 ~~~~~vSa~~g~gi~~l~~~i~~~~ 396 (476)
T 3GEI_A 372 TEVIGISALNGDGIDTLKQHMGDLV 396 (476)
T ss_dssp SCEEECBTTTTBSHHHHHHHHTTTS
T ss_pred CceEEEEccCCCCHHHHHHHHHHHH
Confidence 5688899999999998887766543
##### No 344 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2DYK_B GTP-binding protein; GTPase, ribosome-binding protein, Structural Genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.40 E-value=1.6e-16 Score=104.40 Aligned_cols=152 Identities=22% Similarity=0.220 Sum_probs=88.0 Template_Neff=12.200
Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-PTVFENYVADIEVDGKQVELALWDTAGLE-------DYDRLRPLSYPD 79 (184)
Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-------~~~~~~~~~~~~ 79 (184)
+++++++|.+++|||++++++.......... +..... ............+.+||++|.. .+...+...+..
T Consensus 1 ~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2DYK_B 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRD-LKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------C-CEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CceEEEECCCCCCHHHHHHHHhCCCCccccCCCCCccc-ceeceEEeCCCeEEEEeCCCcCCccHHHHHHHHHHHHHHhc
Confidence 3689999999999999999998664322111 110000 1111111223467889999842 222233344556
Q sequence1 80 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY 159 (184)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
+++++++++... ++......+...+.. ...|+++++||.|+........ .........+
T Consensus 80 ~~~~~~~~d~~~--~~~~~~~~~~~~~~~--~~~~~iiv~~k~d~~~~~~~~~-----------------~~~~~~~~~~ 138 (161)
T 2DYK_B 80 AEVVLFAVDGRA--ELTQADYEVAEYLRR--KGKPVILVATKVDDPKHELYLG-----------------PLYGLGFGDP 138 (161)
T ss_dssp CSEEEEEEESSS--CCCHHHHHHHHHHHH--HTCCEEEEEECCCSGGGGGGCG-----------------GGGGSSSCSC
T ss_pred CCEEEEEEeCCC--CCCHHHHHHHHHHHH--cCCCEEEEEeCCCCccchhhhH-----------------HHhcCCCCCC
Confidence 778888877643 233332333333322 3689999999999875321100 0011122467
Q sequence1 160 MECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 160 ~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
+++|+.++.++.+++.++.+.+
T Consensus 139 ~~~s~~~~~~~~~~~~~l~~~~ 160 (161)
T 2DYK_B 139 IPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp EECBTTTTBSHHHHHHHHHHHC
T ss_pred cccccccccCHHHHHHHHHHhC
Confidence 8899999999999999887654
##### No 345 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3R7W_C GTP-binding protein GTR1, GTP-binding protein; Rag GTPases, Gtr1p, Gtr2p, mTOR; HET: GNP; 2.773A {Saccharomyces cerevisiae}
Probab=99.38 E-value=2.4e-16 Score=115.07 Aligned_cols=165 Identities=14% Similarity=0.254 Sum_probs=93.2 Template_Neff=10.700
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGLEDYDR-----LRPLSYPD 79 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~ 79 (184)
.+++|+++|..|+||||+++.+.+....... .+.+.......... .....+.+||+||+..+.. .+..++..
T Consensus 2 ~~~kv~l~G~~~sGKSsl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~~ 80 (307)
T 3R7W_C 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF-LGNMTLNLWDCGGQDVFMENYFTKQKDHIFQM 80 (307)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHSCCCTTGGGGCCCCCSEEEEEEEE-TTTEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhcCCChhhhccccceeeeEEEeeEe-cCceEEEEEEcCCChHhHHHhhHHhHhhhhcc
Confidence 4689999999999999999999875332111 11110100111111 1234788999999875533 45566788
Q sequence1 80 TDVILMCFSIDSPDSLENIPEKWTP---EVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN--RI 154 (184)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~---~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 154 (184)
+|++++|+|+++....... ..+.. .+....+..|+++++||+|+............... ....... ..
T Consensus 81 ~d~li~V~d~~~~~~~~~~-~~~~~~l~~l~~~~~~~~vivv~nK~D~~~~~~~~~~~~~~~~------~l~~~~~~~~~ 153 (307)
T 3R7W_C 81 VQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMK------NLSETSSEFGF 153 (307)
T ss_dssp EEEEEEEEETTCTTHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECTTSSCHHHHHHHHHHHHH------HHHHHHHTTTC
T ss_pred cCEEEEEEeCCChhHHHHH-HHHHHHHHHHHHHCCCCcEEEEEEccccCCHHHHHHHHHHHHH------HHHhhccccCC
Confidence 9999999999875443332 22222 22222246899999999999864322111111000 0001111 11
Q sequence1 155 GAFGYMECSAKTKDGVREVFEMATRA 180 (184)
Q Consensus 155 ~~~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184)
....++.+|+.++ ++.+.+..++..
T Consensus 154 ~~~~~~~~S~~~~-~~~~~~~~~~~~ 178 (307)
T 3R7W_C 154 PNLIGFPTSIWDE-SLYKAWSQIVCS 178 (307)
T ss_dssp CSCEEEEECTTST-HHHHHHHHHHHT
T ss_pred CceEEEecccCch-HHHHHHHHHHHH
Confidence 1246778888865 555655555543
##### No 346 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4Q5I_B Ferrous iron transport protein B; G PROTEIN, IRON TRANSPORT, GTPASE; 2.8A {Escherichia coli}
Probab=99.37 E-value=2.8e-16 Score=112.99 Aligned_cols=151 Identities=15% Similarity=0.127 Sum_probs=89.6 Template_Neff=9.800
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRL----------RPL 75 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~ 75 (184)
+.++|+++|.+|+|||||++++.+........+... ......+ ......+.+||+||....... ...
T Consensus 2 ~~~~I~l~G~~~~GKSslin~l~~~~~~~~~~~g~t~~~~~~~~--~~~~~~~~ivDtpG~~~~~~~~~~~~~~e~~~~~ 79 (270)
T 4Q5I_B 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQF--STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (270)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEE--ECSSCEEEEEECCCCSCSCCSSSCCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEE--EeCCCeEEEEECCCccCcCCcCCCCChHHHHHHH
Confidence 467999999999999999999987654221111111 1111111 122346889999997543211 111
Q sequence1 76 S--YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 153 (184)
Q Consensus 76 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
+ ...+|++++|+|.++... ....+.... ....|+++++||+|+......... ...+...
T Consensus 80 ~~~~~~~d~ii~vvda~~~~~---~~~~~~~l~---~~~~p~ivvlnk~D~~~~~~~~~~-------------~~~l~~~ 140 (270)
T 4Q5I_B 80 YILSGDADLLINVVDASNLER---NLYLTLQLL---ELGIPCIVALNMLDIAEKQNIRIE-------------IDALSAR 140 (270)
T ss_dssp HHHHTCSSEEEEEEEGGGHHH---HHHHHHHHH---HTTCCEEEEEECHHHHHHTTEEEC-------------HHHHHHH
T ss_pred HHHhCCCCEEEEEEecccchh---HHHHHHHHH---HhCCCEEEEEechHHHHHcCchHH-------------HHHHHHH
Confidence 1 246889999999876432 111111111 236899999999999864322111 0111112
Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATR 179 (184)
Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~ 179 (184)
.+ .+++.+|+.++.++.+++..+.+
T Consensus 141 ~~-~~~v~~sa~~~~gi~~l~~~i~~ 165 (270)
T 4Q5I_B 141 LG-CPVIPLVSARGRGIEALKLAIDR 165 (270)
T ss_dssp HT-SCEEECCCGGGHHHHHHHHHHHT
T ss_pred HC-CCEEEeecCCCCCHHHHHHHHHH
Confidence 22 56888999999999888876654
##### No 347 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6RLB_E PROTEIN; dynein, cilia, intraflagellar transport, complex; 4.5A {Homo sapiens}
Probab=99.37 E-value=2.9e-16 Score=117.00 Aligned_cols=166 Identities=18% Similarity=0.213 Sum_probs=99.7 Template_Neff=9.200
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEV--DGKQVELALWDTAGLEDYDRLRPLSYPD-- 79 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~-- 79 (184)
.....+|+|+|..++|||||++++...... ..++....+.. .... ......+.+||++|...+..++..++..
T Consensus 28 ~~~~~~v~ivG~~~sGKSsli~~~~~~~~~--~~~t~~l~y~~~~~~~~~~~~~~~~~iwdl~g~~~~~~ll~~~l~~~~ 105 (351)
T 6RLB_E 28 EIAEKFVFFIGSKNGGKTTIILRCLDRDEP--PKPTLALEYTYGRRAKGHNTPKDIAHFWELGGGTSLLDLISIPITGDT 105 (351)
T ss_dssp CSSCCEEEEEECTTSSHHHHHHHHTTCCCC--CCSCCSSCCEEEEECCSSSCCCEEEEEEEEESSSSHHHHHTSSCCGGG
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCceeceEEEEEecCCCCCCCceEEEEEeCCCcchhHHccccCCCCc
Confidence 345788999999999999999998866421 12222122211 1111 1224578999999987776666655554
Q sequence1 80 --TDVILMCFSIDSPDSLENIPEKWTPEVKHFC--------------------------------------PNVPIILVG 119 (184)
Q Consensus 80 --~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------------~~~~~~vv~ 119 (184)
.+++++|+|++.+.++......|...+.... ...|+++|+
T Consensus 106 ~~~~~~iiv~D~s~p~~~~~~l~~wl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~iPivIV~ 185 (351)
T 6RLB_E 106 LRTFSLVLVLDLSKPNDLWPTMENLLQATKSHVDKVIMKLGKTNAKAVSEMRQKIWNNMPKDHPDHELIDPFPVPLVIIG 185 (351)
T ss_dssp STTEEEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCTHHHHHHHHHHTTTSSSSSCCCCCSSCCCSCEEEEE
T ss_pred hhceEEEEEeeCCCcchHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCCCCcccccCCCCCEEEEe
Confidence 6799999999988765444444443332211 138999999
Q sequence1 120 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 120 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
||+|+...... ... .........++..++ ..++++|+ .+.++..++..+.+.+
T Consensus 186 ~K~D~~~~~~~-~~~------~~i~~~lR~~a~~~g-a~l~~tS~-~~~~v~~l~~~l~~~~ 238 (351)
T 6RLB_E 186 SKYDVFQDFES-EKR------KVICKTLRFVAHYYG-ASLMFTSK-SEALLLKIRGVINQLA 238 (351)
T ss_dssp ECGGGGGGSCH-HHH------HHHHHHHHHHHHHHT-CEEECCCS-SCTHHHHHHHHHTTST
T ss_pred echHhhccCCH-HHH------HHHHHHHHHHHHHcC-CEEEEEcC-CHHHHHHHHHHHHHHH
Confidence 99999764211 000 011122223333433 56778884 4467777666655544
##### No 348 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6SC2_F DYNC2H1 variant protein; dynein, cilia, intraflagellar transport, complex; HET: ADP, ATP; 3.9A {Homo sapiens}
Probab=99.37 E-value=2.9e-16 Score=117.00 Aligned_cols=166 Identities=18% Similarity=0.213 Sum_probs=99.7 Template_Neff=9.200
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEV--DGKQVELALWDTAGLEDYDRLRPLSYPD-- 79 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~-- 79 (184)
.....+|+|+|..++|||||++++...... ..++....+.. .... ......+.+||++|...+..++..++..
T Consensus 28 ~~~~~~v~ivG~~~sGKSsli~~~~~~~~~--~~~t~~l~y~~~~~~~~~~~~~~~~~iwdl~g~~~~~~ll~~~l~~~~ 105 (351)
T 6SC2_F 28 EIAEKFVFFIGSKNGGKTTIILRCLDRDEP--PKPTLALEYTYGRRAKGHNTPKDIAHFWELGGGTSLLDLISIPITGDT 105 (351)
T ss_dssp CCCCCEEEEEECTTSSHHHHHHHHTTCCCC--CCSCCSSEEEEEEECCSSSCCCEEEEEEEEESSSSHHHHHTSSCCGGG
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCceeceEEEEEecCCCCCCCceEEEEEeCCCcchhHHccccCCCCc
Confidence 345788999999999999999998866421 12222122211 1111 1224578999999987776666655554
Q sequence1 80 --TDVILMCFSIDSPDSLENIPEKWTPEVKHFC--------------------------------------PNVPIILVG 119 (184)
Q Consensus 80 --~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------------~~~~~~vv~ 119 (184)
.+++++|+|++.+.++......|...+.... ...|+++|+
T Consensus 106 ~~~~~~iiv~D~s~p~~~~~~l~~wl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~iPivIV~ 185 (351)
T 6SC2_F 106 LRTFSLVLVLDLSKPNDLWPTMENLLQATKSHVDKVIMKLGKTNAKAVSEMRQKIWNNMPKDHPDHELIDPFPVPLVIIG 185 (351)
T ss_dssp GGGEEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCTHHHHHHHHHHTTTSCSSSCCCCCSSCCCSCEEEEE
T ss_pred hhceEEEEEeeCCCcchHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCCCCCcccccCCCCCEEEEe
Confidence 6799999999988765444444443332211 138999999
Q sequence1 120 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 120 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
||+|+...... ... .........++..++ ..++++|+ .+.++..++..+.+.+
T Consensus 186 ~K~D~~~~~~~-~~~------~~i~~~lR~~a~~~g-a~l~~tS~-~~~~v~~l~~~l~~~~ 238 (351)
T 6SC2_F 186 SKYDVFQDFES-EKR------KVICKTLRFVAHYYG-ASLMFTSK-SEALLLKIRGVINQLA 238 (351)
T ss_dssp ECGGGGGGSCH-HHH------HHHHHHHHHHHHHHT-CEEECCSS-SCTHHHHHHHHHTTTT
T ss_pred echHhhccCCH-HHH------HHHHHHHHHHHHHcC-CEEEEEcC-CHHHHHHHHHHHHHHH
Confidence 99999764211 000 011122223333433 56778884 4467777666655544
##### No 349 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3I8S_B Ferrous iron transport protein B; GTPase, GPCR, iron uptake, Feo; 1.8A {Escherichia coli}
Probab=99.37 E-value=3e-16 Score=113.06 Aligned_cols=152 Identities=14% Similarity=0.130 Sum_probs=89.4 Template_Neff=9.800
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-NYVADIEVDGKQVELALWDTAGLEDYDRL----------RPL 75 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~ 75 (184)
+.++|+++|.+|+|||||++++++........+.... .....+. .....+.+||+||....... ...
T Consensus 2 ~~~~I~l~G~~~~GKSslin~l~~~~~~~~~~~g~t~~~~~~~~~--~~~~~~~lvDtpG~~~~~~~~~~~~~~e~~~~~ 79 (274)
T 3I8S_B 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFS--TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTTCEEEEESTTSSCEEEEEEEE--CSSCEEEEEECCCCSCSCCSSSCCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceEEeeEEEEE--eCCCeEEEEECCCccccCCcCCCCCHHHHHHHH
Confidence 4689999999999999999999876532211111111 1111111 12346889999997543211 111
Q sequence1 76 S--YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 153 (184)
Q Consensus 76 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
+ ...+|++++|+|.++... ... +...+. ....|+++|+||+|+......... ...+...
T Consensus 80 ~~~~~~~d~ii~vvd~~~~~~---~l~-l~~~l~--~~~~p~ivvlnk~D~~~~~~~~~~-------------~~~l~~~ 140 (274)
T 3I8S_B 80 YILSGDADLLINVVDASNLER---NLY-LTLQLL--ELGIPCIVALNMLDIAEKQNIRIE-------------IDALSAR 140 (274)
T ss_dssp HHHHTCSSEEEEEEEGGGHHH---HHH-HHHHHH--HHTCCEEEEEECHHHHHHTTCCBC-------------HHHHHHH
T ss_pred HHHhCCCCEEEEEEeccchHH---HHH-HHHHHH--HhCCCEEEEeechHHHHHcCchHH-------------HHHHHHH
Confidence 1 246889999988876322 111 111111 135899999999999864322111 1111122
Q sequence1 154 IGAFGYMECSAKTKDGVREVFEMATRA 180 (184)
Q Consensus 154 ~~~~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184)
.+ .+++++|+.++.|+.++++.+.+.
T Consensus 141 lg-~~~v~vsa~~~~gi~~l~~~i~~~ 166 (274)
T 3I8S_B 141 LG-CPVIPLVSTRGRGIEALKLAIDRY 166 (274)
T ss_dssp HT-SCEEECCCGGGHHHHHHHHHHHTC
T ss_pred HC-CCEEEccCCCCCCHHHHHHHHHHH
Confidence 22 578889999999999888766543
##### No 350 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4NCF_A Eukaryotic translation initiation factor 5B; Translation initiation, GTPase, eIF5B/IF2, Subunit; HET: GDP; 3.015A {Saccharomyces cerevisiae}
Probab=99.37 E-value=3.5e-16 Score=120.29 Aligned_cols=119 Identities=18% Similarity=0.129 Sum_probs=72.2 Template_Neff=10.100
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVD----------------GKQVELALWDTAGL 66 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~----------------~~~~~~~i~D~~g~ 66 (184)
...++++|+++|..++|||||++++..........+..... ....+..+ .....+.+||+||+
T Consensus 6 ~~~~~~~V~viG~~~~GKTtLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtpG~ 85 (457)
T 4NCF_A 6 KDLRSPICCILGHVDTGKTKLLDKIRQTNVQGGEAGGITQQIGATYFPIDAIKAKTKVMAEYEKQTFDVPGLLVIDTPGH 85 (457)
T ss_dssp -CCCCCEEEEEECTTSSHHHHHHHHHSCCCC---CCCCEECSSCEE-EHHHHHHHTSGGGGTSCCCCCSSEEEEECSSSS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHcCCCCCccccCCCccceeeEEEecccchhhhccceeeeeccccCCcEEEEeCCCC
Confidence 34667899999999999999999997654332211111000 00000000 11124779999999
Q sequence1 67 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184)
Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184)
+.+...+..+...+|++++|+|+++....+ ..+. ...+.. ...|+++++||+|+..
T Consensus 86 ~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~-~~e~-l~~~~~--~~~p~ivv~nK~D~~~ 141 (457)
T 4NCF_A 86 ESFSNLRSRGSSLCNIAILVIDIMHGLEQQ-TIES-IKLLRD--RKAPFVVALNKIDRLY 141 (457)
T ss_dssp GGGSSCTTTHHHHCSEEEEEEETTTCSCHH-HHHH-HHHHTC--CEE---EEEECGGGST
T ss_pred HHHHHHHHHHhcCCCEEEEEEECCCCCCHH-HHHH-HHHHHH--hCCCEEEEEecCCCCC
Confidence 988888888888999999999998632211 1112 222222 2578999999999875
##### No 351 #####
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>4TMX_A eIF5B; Translation factor, GTPase, monovalent cation; HET: GTP, EDO; 1.5A {Chaetomium thermophilum}
Probab=99.36 E-value=4.4e-16 Score=115.37 Aligned_cols=118 Identities=19% Similarity=0.149 Sum_probs=74.9 Template_Neff=10.900
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIE----------------VDGKQVELALWDTAGLE 67 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~----------------~~~~~~~~~i~D~~g~~ 67 (184)
....++|+++|..++|||||+++|................. ...+. .......+.+||+||++
T Consensus 7 ~~~~~~I~viG~~~sGKStLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~pG~~ 86 (345)
T 4TMX_A 7 NLRSPICCILGHVNTGKTKLLDKIRQTNVQEGEAGGITQQIGATYFPVEAIKQKTAVVNKDGKFEFKVPGLLIIDTPGHE 86 (345)
T ss_dssp GBCCCEEEEEESTTSSHHHHHHHHHTCCHHHHSGGGCCCSCEEEEEEHHHHHHHTGGGSTTSCSCCCCSEEEEEECCCSG
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhhcccccCcCCcceecceeEEcCHHHHhhhceeecCCCCccccCCcEEEEECCCCH
Confidence 45678899999999999999999986644322111000000 00000 01112348899999988
Q sequence1 68 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184)
.+...+..++..+|++++|+|+.+...... .+.+ ..+.. ...|+++++||+|+..
T Consensus 87 ~~~~~~~~~~~~~d~~ilvvd~~~~~~~~~-~~~l-~~~~~--~~~p~ivv~nK~D~~~ 141 (345)
T 4TMX_A 87 SFSNLRSRGSSLCNIAILVVDIMHGLEPQT-IESL-RLLRE--RKTPFVVALNKIDRLY 141 (345)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHH-HHHHH--HTCCEEEEEECGGGST
T ss_pred HHHHHHHHHhhcCCEEEEEEecCCCCCHHH-HHHH-HHHHH--cCCCEEEEEEcHHhcc
Confidence 887777777888999999999876432211 1122 12221 2578999999999875
##### No 352 #####
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>6AU6_A Guanine nucleotide-binding protein G(s) subunit; G protein, GDP, active conformation; HET: GDP, GOL; 1.7A {Homo sapiens}
Probab=99.35 E-value=4.7e-16 Score=116.94 Aligned_cols=127 Identities=17% Similarity=0.175 Sum_probs=78.6 Template_Neff=9.200
Q sequence1 56 VELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDS----------PDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDL 124 (184)
Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~ 124 (184)
+.+.+||++|+..+...|..++..++++++|+|+++ ...+......+..+.... ....|+++++||.|+
T Consensus 200 ~~l~i~D~~g~~~~~~~~~~~~~~~~~ii~v~Dls~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iilv~nK~D~ 279 (377)
T 6AU6_A 200 VNFHMFDVGGQRDERRKWIQSFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 279 (377)
T ss_dssp EEEEEEEECCSGGGGGGGGGGCSSCSEEEEEEEGGGTTCBCTTTSCSBHHHHHHHHHHHHHTCGGGTTCCEEEEEECHHH
T ss_pred EEEEEEEeCCChhHHHHHHHHccCCcEEEEEEechhcccccccCcCccHHHHHHHHHHHHHhChhhhcCeEEEEccChHH
Confidence 567899999998887788888889999999999997 344444444444333221 126889999999999
Q sequence1 125 RNDEHTR--RELAKMKQEPV----------------KPEEGRDM-----ANR-------IGAFGYMECSAKTKDGVREVF 174 (184)
Q Consensus 125 ~~~~~~~--~~~~~~~~~~~----------------~~~~~~~~-----~~~-------~~~~~~~~~s~~~~~~i~~~~ 174 (184)
....... ..+........ ....+..+ ... ...+.++++|++++.++..+|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~f 359 (377)
T 6AU6_A 280 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF 359 (377)
T ss_dssp HHHHHHHCSSCGGGTSGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHHHSSCTTCCEEEEECCTTCHHHHHHHH
T ss_pred HHHHHHcCCccHHHHCccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHcccCCCCceeEEEeeeecCHHHHHHHH
Confidence 8643210 00100000000 00011111 000 112567889999999999999
Q sequence1 175 EMATRAAL 182 (184)
Q Consensus 175 ~~~~~~~~ 182 (184)
..+.+.+.
T Consensus 360 ~~i~~~i~ 367 (377)
T 6AU6_A 360 NDCRDIIQ 367 (377)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
##### No 353 #####
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>4B43_A TRANSLATION INITIATION FACTOR IF-2; TRANSLATION, INITIATION, GTP HYDROLYSIS MECHANISM; HET: GOL; 1.937A {THERMUS THERMOPHILUS}
Probab=99.35 E-value=4.9e-16 Score=116.24 Aligned_cols=163 Identities=22% Similarity=0.223 Sum_probs=90.1 Template_Neff=9.900
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
....+|+++|..++|||||++++..........+..... ............+.+||+||+..+...+..+...+|++++
T Consensus 71 ~~~~~I~viG~~~~GKStLi~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~il 149 (363)
T 4B43_A 71 RRPPVVVIMGHVDHGLTTLLDYLRKSRIAEKEAGGITQH-VGAFEVKTPQGTVVFIDTPGAEAFTTIRQRGAKVADIAVI 149 (363)
T ss_dssp BCCCEEEEEECGGGSHHHHHHHHHHTTSTTCSSSCCCCC-CSEEEEEETTEEEEEESSCCCCC---------CCCSEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCcchhcCCceee-eEEEEEEcCCceEEEEECCChHHHHHHHHHHHhcCCEEEE
Confidence 456789999999999999999998654432211111111 1111111123468899999998887777777888999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184)
|+|.++.. .... ..+...+.. ...|+++++||+|+....... ......... ..........+++++|+.
T Consensus 150 vvd~~~~~-~~~~-~~~~~~~~~--~~~piivvinK~D~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~ii~vSa~ 218 (363)
T 4B43_A 150 VIAADDGI-MPQT-EEAIAHAKA--AGAKLIFAINKIDLPQADPEK-VKRQLMERG------FVPEEYGGDAIVIPISAK 218 (363)
T ss_dssp EEETTTCC-CHHH-HHHHHHHHH--TTCEEEEEEECTTSTTCCHHH-HHHHHHHTT------CCBGGGTSSBCEEECCTT
T ss_pred EEECCCCC-chhH-HHHHHHHHH--cCCcEEEEEECcCCCCCCHHH-HHHHHHHcC------CChHHhCCCeEEEECcCC
Confidence 99987632 1112 122222222 257899999999986532110 000000000 000000112568899999
Q sequence1 166 TKDGVREVFEMATRA 180 (184)
Q Consensus 166 ~~~~i~~~~~~~~~~ 180 (184)
++.|+.++++++...
T Consensus 219 ~g~gi~~l~~~l~~~ 233 (363)
T 4B43_A 219 TGQGVQDLLEMILLL 233 (363)
T ss_dssp TCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999888776543
##### No 354 #####
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>5YT0_A Probable translation initiation factor IF-2; translation initiation factor, ribosomal stalk; HET: GDP; 1.89A {Aeropyrum pernix K1}
Probab=99.35 E-value=5.7e-16 Score=115.76 Aligned_cols=118 Identities=21% Similarity=0.159 Sum_probs=72.8 Template_Neff=10.500
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE----NYVA-------------DIEVDGKQVELALWDTAGLE 67 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~----~~~~-------------~~~~~~~~~~~~i~D~~g~~ 67 (184)
..+.++|+++|..++|||||+++|............... .... ..........+.+||+||+.
T Consensus 13 ~~~~~~I~viG~~~~GKStLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~ 92 (364)
T 5YT0_A 13 RLRQPIVVVLGHVDHGKTTLLDKIRRTAVAAKEAGGITQHIGASIVPADVIEKIAEPLKKVIPVKLVIPGLLFIDTPGHE 92 (364)
T ss_dssp -CCCCEEEEEECTTSSHHHHHHHHHHHHHHTC---CCEEETTEEEEEHHHHHHHTGGGTTTSCCCCCSCEEEEESSCSHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHhhccccccccCCccccceeEEcCHHHHHHHhhHhhhccCcccccCCeEEEeCCCcH
Confidence 456789999999999999999999765432111100000 0000 00000111358899999998
Q sequence1 68 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184)
.+...+..+...+|++++|+|+.+.. ......+...+.. ...|+++++||+|+..
T Consensus 93 ~~~~~~~~~~~~~d~~ilVvd~~~~~--~~~t~~~l~~~~~--~~~p~ivvinK~D~~~ 147 (364)
T 5YT0_A 93 LFSNLRRRGGSVADFAILVVDIMEGF--KPQTYEALELLKE--RRVPFLIAANKIDRIP 147 (364)
T ss_dssp HHHTTBCCC-BSCSEEEEEEETTTCC--CHHHHHHHHHHHH--HTCCEEEEEECGGGST
T ss_pred HHHHHHHHHHhhCCEEEEEEecccCC--cHHHHHHHHHHHH--cCCCEEEEEEchhcCC
Confidence 88777777888999999999998632 1111122222222 2578899999999865
##### No 355 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4N3N_A Eukaryotic translation initiation factor 5B-like; Translation initiation, GTPase, eIF5B/IF2, Subunit; 2.752A {Chaetomium thermophilum var. thermophilum}
Probab=99.34 E-value=5.8e-16 Score=122.83 Aligned_cols=118 Identities=19% Similarity=0.149 Sum_probs=72.8 Template_Neff=8.700
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY---VADI--------------EVDGKQVELALWDTAGLE 67 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~---~~~~--------------~~~~~~~~~~i~D~~g~~ 67 (184)
..+.++|+++|..++|||||++++..........+...... .... ........+.+||+||++
T Consensus 7 ~~r~p~V~VlG~v~~GKTTLl~~l~~~~~~~~~~~git~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPGh~ 86 (603)
T 4N3N_A 7 NLRSPICCILGHVDTGKTKLLDKIRQTNVQEGEAGGITQQIGATYFPVEAIKQKTAVVNKDGKFEFKVPGLLIIDTPGHE 86 (603)
T ss_dssp CCCCCEEEEEC----CHHHHHHHHHCCCCC---CCCCEEETTEEEEEHHHHHHHHGGGCSSCCSCCCCSEEEEECCSSSG
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcCCcccccceeEEeehHHhhhceeeecCCCCeeccCCcEEEEeCCCCH
Confidence 45678899999999999999999987654322111111100 0000 011112458899999999
Q sequence1 68 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184)
.+...+......+|++++|+|+.+....+ ..+. ...+.. ...|+++++||+|+..
T Consensus 87 ~f~~~~~~~~~~aDiaIlVvd~~~g~~~q-t~e~-l~~l~~--~~~p~IvviNK~D~~~ 141 (603)
T 4N3N_A 87 SFSNLRSRGSSLCNIAILVVDIMHGLEPQ-TIES-LRLLRE--RKTPFVVALNKIDRLY 141 (603)
T ss_dssp GGCSCGGGGGGTCSEEEEEEETTTCCCHH-HHHH-HHHHHH--HTCCEEEEEECGGGST
T ss_pred HHHHHHHhhhccCCEEEEEEeCCCCCCHH-HHHH-HHHHHH--hCCCEEEEEeCCCCCc
Confidence 99888888889999999999998643221 1122 222222 2578999999999875
##### No 356 #####
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>3GEH_A tRNA modification GTPase mnmE (E.C.3.6.-.-); G protein, GTPase, tRNA modification; HET: FON, GDP; 3.2A {Nostoc sp. PCC}
Probab=99.34 E-value=6.2e-16 Score=119.15 Aligned_cols=150 Identities=21% Similarity=0.238 Sum_probs=86.9 Template_Neff=9.000
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVP-TVFENYVADIEVDGKQVELALWDTAGLEDYDR--------LRPLS 76 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~ 76 (184)
..++|+++|.+++|||||++++........ ..+ ++.......+.. ....+.+||+||...... ....+
T Consensus 223 ~~~~v~ivG~~~aGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~v~l~DtpG~~~~~~~~e~~~~~~~~~~ 300 (462)
T 3GEH_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVV--GGIPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEE--TTEEEEECC--------------------CC
T ss_pred cCceEEEECCCCCChHHHHHHHhcCCceeecCCCCCccceEEEEEEE--CCeeEEEEeCCCCCCCcHHHHHHHHHHHHHH
Confidence 468999999999999999999987654211 111 111111111121 245688999999754321 12234
Q sequence1 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
+..+|++++|+|......... ..+...+ ...|+++|+||+|+........ . .. ....
T Consensus 301 ~~~ad~il~vid~~~~~~~~~--~~~~~~~----~~~~iivv~nK~Dl~~~~~~~~------------~---~~--~~~~ 357 (462)
T 3GEH_A 301 ANTADLVLLTIDAATGWTTGD--QEIYEQV----KHRPLILVMNKIDLVEKQLITS------------L---EY--PENI 357 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH--HHHHHHH----TTSCEEEEEECTTSSCGGGSTT------------C---CC--CTTC
T ss_pred HccCCEEEEEEeCCCCCCccc--HHHHHHh----cCCCEEEEEeCCchhhHHHHhc------------C---cC--Cccc
Confidence 577899999999887433211 1121111 3578999999999976432110 0 00 0112
Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
..++.+|++++.|+.+++..+.+.+
T Consensus 358 ~~~~~iSa~~g~gi~~l~~~i~~~l 382 (462)
T 3GEH_A 358 TQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp CCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Confidence 5788999999999999888776654
##### No 357 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4B3X_A TRANSLATION INITIATION FACTOR IF-2; TRANSLATION, INITIATION, GTP HYDROLYSIS MECHANISM; HET: GOL; 1.95A {THERMUS THERMOPHILUS}
Probab=99.34 E-value=6.9e-16 Score=115.41 Aligned_cols=163 Identities=23% Similarity=0.221 Sum_probs=96.8 Template_Neff=10.100
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
...++|+++|..++|||||++++..........+.... .............+.+||+||+..+...+..+...+|++++
T Consensus 71 ~~~~~i~i~G~~~~GKStL~~~l~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~il 149 (363)
T 4B3X_A 71 RRPPVVVIMGHVDHGKTTLLDYLRKSRIAEKEGGGITQ-HVGAFEVKTPQGTVVFIDTPGHEAFTTIRQRGAKVADIAVI 149 (363)
T ss_dssp BCCCEEEEEECTTTTHHHHHHHHHHHHHSSCCSSCCCC-CCSEEEEEETTEEEEEECCSSSSSSSTTCCCCSCCCSEEEE
T ss_pred cCCCEEEEECCCCCChhHHHHHHcCCCCCCCCCCCcee-EEEEEEEEcCCceEEEEECCCCcchHHHHHhhcccCCEEEE
Confidence 35678999999999999999998865433221111111 11111122223467899999998887777777888999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184)
|+|.++.. ......+...+.. ...|+++++||+|+...... ........ .............++++|+.
T Consensus 150 vvd~~~~~--~~~~~~~l~~~~~--~~~piivv~nK~D~~~~~~~-~~~~~l~~------~~~~~~~~~~~~~~v~vSa~ 218 (363)
T 4B3X_A 150 VIAADDGI--MPQTEEAIAHAKA--AGAKLIFAINKIDLPQADPE-KVKRQLME------RGFVPEEYGGDAIVIPISAK 218 (363)
T ss_dssp EEETTTCS--CHHHHHHHHHHHH--TTCEEEEEEECTTSTTCCHH-HHHHHHHH------TTCCBGGGTSSBEEEECCTT
T ss_pred EEECCCCC--cHHHHHHHHHHHH--hCCCEEEEEECCCCCCCCHH-HHHHHHHH------cCCChHHhCCCccEEECcCC
Confidence 99987532 1111122222222 25789999999998653211 00000000 00000001112568899999
Q sequence1 166 TKDGVREVFEMATRA 180 (184)
Q Consensus 166 ~~~~i~~~~~~~~~~ 180 (184)
++.|+.++++++...
T Consensus 219 ~g~~i~~l~~~l~~~ 233 (363)
T 4B3X_A 219 TGQGVQDLLEMILLL 233 (363)
T ss_dssp TCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999988776543
##### No 358 #####
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>4N3G_A Eukaryotic translation initiation factor 5B-like; Translation initiation, GTPase, eIF5B/IF2, Subunit; HET: LAC; 3.203A {Chaetomium thermophilum var. thermophilum}
Probab=99.33 E-value=8.4e-16 Score=121.97 Aligned_cols=119 Identities=18% Similarity=0.150 Sum_probs=0.0 Template_Neff=8.800
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY---VADI--------------EVDGKQVELALWDTAGL 66 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~---~~~~--------------~~~~~~~~~~i~D~~g~ 66 (184)
...+.++|+++|..++|||||++++..........+...... .... ........+.+||+||+
T Consensus 6 ~~~r~~~I~vlG~~~~GKTtLl~~l~~~~~~~~~~~git~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPGh 85 (603)
T 4N3G_A 6 DNLRSPICCILGHVDTGKTKLLDKIRQTNVQEGEAGGITQQIGATYFPVEAIKQKTAVVNKDGKFEFKVPGLLIIDTPGH 85 (603)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCCccceeeEEeeHHHHhhceeeecCCCCeeccCCeEEEEECCCC
Confidence 345678899999999999999999987654322111111000 0000 01111245889999999
Q sequence1 67 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184)
Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184)
+.+...+......+|++++|+|+++....+ ..+.+ ..+.. ...|+++++||+|+..
T Consensus 86 ~~f~~~~~~~~~~aDiaIlVVd~~~g~~~q-t~e~i-~~l~~--~~~p~IvviNK~D~~~ 141 (603)
T 4N3G_A 86 ESFSNLRSRGSSLCNIAILVVDIMHGLEPQ-TIESL-RLLRE--RKTPFVVALNKIDRLY 141 (603)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHchhcCCEEEEEEecCCCCCHH-HHHHH-HHHHH--cCCCEEEEEeChhccc
Confidence 999888888889999999999998643221 11222 22222 2578999999999875
##### No 359 #####
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>6EG8_I Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit; G protein Heterotrimer GDP GPCR; HET: GDP; 2.8A {Homo sapiens}
Probab=99.32 E-value=9.4e-16 Score=115.49 Aligned_cols=127 Identities=16% Similarity=0.183 Sum_probs=78.5 Template_Neff=9.400
Q sequence1 56 VELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDS----------PDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDL 124 (184)
Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~-~~~~~~vv~nK~D~ 124 (184)
+.+.+||++|+..+...|..++..++++++|+|+++ ..++......+........ ...|+++|+||.|+
T Consensus 204 ~~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~dls~y~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~nK~Dl 283 (381)
T 6EG8_I 204 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 283 (381)
T ss_dssp EEEEEEEECSSCCSSCGGGGGGTTCSEEEEEEETTCTTCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCCEEEEEECHHH
T ss_pred eEEEEEECCCCcchHHHHHHHhcCCCEEEEEEEcccccccccCCCCCchHHHHHHHHHHHHcCHhHcCCCEEEEEeCchH
Confidence 567799999998888888888899999999999987 4445544444444433221 26889999999999
Q sequence1 125 RNDEHT--RRELAKMKQEPVK----------------PEEGRDM-----AN-------RIGAFGYMECSAKTKDGVREVF 174 (184)
Q Consensus 125 ~~~~~~--~~~~~~~~~~~~~----------------~~~~~~~-----~~-------~~~~~~~~~~s~~~~~~i~~~~ 174 (184)
...... ...+......... ...+..+ .. ....+.++++||.++.++.++|
T Consensus 284 ~~~k~~~~~~~~~~~f~~y~~~~~~~~~~~~~~~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f 363 (381)
T 6EG8_I 284 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF 363 (381)
T ss_dssp HHHHHHHCSSCHHHHCGGGSSCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHTTSCTTSSCEEEEECCTTCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHhCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCccCCeEEEEEEecCChHHHHHHH
Confidence 764321 0000000000000 0001111 00 0112457799999999999999
Q sequence1 175 EMATRAAL 182 (184)
Q Consensus 175 ~~~~~~~~ 182 (184)
..+.+.+.
T Consensus 364 ~~i~~~i~ 371 (381)
T 6EG8_I 364 NDCRDIIQ 371 (381)
T ss_dssp HHTHHHHH
T ss_pred HHHHHHHH
Confidence 88877553
##### No 360 #####
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>3TR5_A Peptide chain release factor 3; Protein synthesis, TRANSLATION; HET: MSE, GDP; 2.11A {Coxiella burnetii}
Probab=99.32 E-value=1e-15 Score=119.77 Aligned_cols=118 Identities=19% Similarity=0.131 Sum_probs=75.8 Template_Neff=9.300
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT----------V----------F-ENYVADIEVDGKQVELALWDT 63 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t----------~----------~-~~~~~~~~~~~~~~~~~i~D~ 63 (184)
.....+|+++|.+++|||||+++|..........+. . . ...............+.+||+
T Consensus 10 ~~~~~~i~iiG~~~~GKTtL~~~Ll~~~~~~~~~~~v~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDt 89 (528)
T 3TR5_A 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDT 89 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECC
T ss_pred hhhCeEEEEEcCCCCCHHHHHHHHhcccCCccccccccCCCCcceeecccchHHHHhCCeeeceeeEeeeCCcEEEEEEC
Confidence 356789999999999999999999753221100000 0 0 000001111222457889999
Q sequence1 64 AGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184)
Q Consensus 64 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184)
||+..+...+...+..+|++++|+|+.+. +......+...... ...|+++++||+|...
T Consensus 90 pG~~df~~~~~~~l~~~D~~IlViD~~~g--~~~~t~~l~~~~~~--~~~piivviNK~D~~~ 148 (528)
T 3TR5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKG--VEPRTIKLMEVCRL--RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTC--SCHHHHHHHHHHHT--TTCCEEEEEECTTSCC
T ss_pred CCCCCcHHHHHHHHHhCCEEEEEEECCCC--CcHHHHHHHHHHHH--cCCCEEEEEeCCCCCC
Confidence 99988877777788899999999999872 22222222222222 3578999999999964
##### No 361 #####
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>3PEN_A Translation initiation factor 2 subunit; RNA, Met, Archaeal Proteins, Binding; HET: 5GP, GDP; 2.3005A {Sulfolobus solfataricus}
Probab=99.32 E-value=1.1e-15 Score=115.53 Aligned_cols=168 Identities=16% Similarity=0.073 Sum_probs=99.7 Template_Neff=10.800
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP--TV-FEN--------YVA-----D---IEVDGKQVELALWDT 63 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~--t~-~~~--------~~~-----~---~~~~~~~~~~~i~D~ 63 (184)
+...+..+|+++|..++|||||+++|........... .. ... ... . .........+.+||+
T Consensus 3 ~~~~~~~~I~v~G~~~~GKStLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDt 82 (403)
T 3PEN_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHhccccccccCCceeeEeEecCCCCCceeecCcccccCCCCCCccceeEEEEEeC
Confidence 4557789999999999999999999986432211000 00 000 000 0 000111246899999
Q sequence1 64 AGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVK 143 (184)
Q Consensus 64 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~ 143 (184)
||+..+...+......+|++++|+|..+........+.+. ..... ...|+++++||+|+...........+...
T Consensus 83 pG~~~~~~~~~~~~~~~d~~ilvid~~~~~~~~~~~~~l~-~~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~i~~---- 156 (403)
T 3PEN_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFV-ALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQ---- 156 (403)
T ss_dssp CCSGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHH-HHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHH----
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEeCCCCCCChhhHHHHH-HHHHh-CCCEEEEEEEcccCCCHHHHHHHHHHHHH----
Confidence 9998877667777788999999999887543333322222 22211 24689999999998764321111111000
Q sequence1 144 PEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRA 180 (184)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184)
.... .......++++|+.++.++.++++.+...
T Consensus 157 --~~~~--~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 189 (403)
T 3PEN_A 157 --FTKG--TWAENVPIIPVSALHKINIDSLIEGIEEY 189 (403)
T ss_dssp --HHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred --HHcC--CCccCCCEEEcccccccCHHHHHHHHHHH
Confidence 0000 01122578899999999998888776543
##### No 362 #####
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>4N3S_A Domains1-3; Translation initiation, GTPase, eIF5B/IF2, Subunit; HET: EDO, GOL; 1.832A {Saccharomyces cerevisiae}
Probab=99.31 E-value=1.2e-15 Score=117.50 Aligned_cols=118 Identities=17% Similarity=0.110 Sum_probs=68.1 Template_Neff=10.000
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEV----------------DGKQVELALWDTAGLE 67 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~----------------~~~~~~~~i~D~~g~~ 67 (184)
..+.++|+++|..++|||||++++..........+..... ....+.. ......+.+||+||++
T Consensus 7 ~~~~~~V~viG~~~~GKTtLl~~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtpG~~ 86 (457)
T 4N3S_A 7 DLRSPICCILGHVDTGKTKLLDKIRQTNVQGGEAGGITQQIGATYFPIDAIKAKTKVMAEYEKQTFDVPGLLVIDTPGHE 86 (457)
T ss_dssp CCCCCEEEEECC------CHHHHHTCCCC-----CCCEECSSEEEEEHHHHHHHHGGGGGTCCCCCCSSEEEEECCSSSG
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCccccceeEEeehhHHHHhHhhHHHhhhccCCCCcEEEEeCCCCH
Confidence 4567899999999999999999997654322111100000 0000000 0112247799999999
Q sequence1 68 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184)
.+...+..++..+|++++|+|+++....+ ..+ +...+.. ...|+++++||+|+..
T Consensus 87 ~~~~~~~~~~~~~D~iIlVvd~~~~~~~~-~~e-~l~~l~~--~~~p~ivvinK~D~~~ 141 (457)
T 4N3S_A 87 SFSNLRSRGSSLCNIAILVIDIMHGLEQQ-TIE-SIKLLRD--RKAPFVVALNKIDRLY 141 (457)
T ss_dssp GGCSCGGGHHHHCSEEEEEEETTTBCCHH-HHH-HHHHHHH--HTCCEEEEEECGGGST
T ss_pred HHHHHHHHhhhcCCEEEEEEeCCCCCCHH-HHH-HHHHHHH--cCCCEEEEEecccccc
Confidence 88888888888999999999988632211 111 2222222 2678999999999875
##### No 363 #####
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>1XZP_A Probable tRNA modification GTPase trmE; GTP-binding, THF-binding, tRNA-modification, HYDROLASE; HET: SO4; 2.3A {Thermotoga maritima} SCOP: c.37.1.8, d.250.1.2, a.24.25.1
Probab=99.31 E-value=1.3e-15 Score=117.98 Aligned_cols=151 Identities=21% Similarity=0.236 Sum_probs=91.9 Template_Neff=8.600
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVP-TVFENYVADIEVDGKQVELALWDTAGLEDYD---------RLRPL 75 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~ 75 (184)
..++|+++|.+++|||||++.+.+...... ..+ ++......... .....+.+||+||..... .....
T Consensus 242 ~~~~V~ivG~~~aGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~e~~~~~~~~~ 319 (482)
T 1XZP_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIV--IRGILFRIVDTAGVRSETNDLVERLGIERTLQ 319 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEE--ETTEEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhcCCcceecCCCCceEeeEeeeeE--ECCeEEEEEeCCCCCCCChHHHHHHhHHHHHH
Confidence 567999999999999999999987543211 111 11111111111 123567899999975432 12233
Q sequence1 76 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIG 155 (184)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
+...+|++++|+|.+...... . ..+...+ ...|+++|+||+|+........ .. . .+ . .
T Consensus 320 ~~~~ad~vi~V~d~~~~~~~~-~-~~~l~~~----~~~p~iiV~NK~Dl~~~~~~~~-i~---------~---~l-~--~ 377 (482)
T 1XZP_A 320 EIEKADIVLFVLDASSPLDEE-D-RKILERI----KNKRYLVVINKVDVVEKINEEE-IK---------N---KL-G--T 377 (482)
T ss_dssp HHHHCSEEEEEEETTSCCCHH-H-HHHHHHH----TTSSEEEEEEECSSCCCCCHHH-HH---------H---HH-T--C
T ss_pred HHHhCCEEEEEEeCCCCCCHH-H-HHHHHHH----cCCcEEEEEeCCCcCccCCHHH-HH---------H---Hh-C--C
Confidence 556789999999998754322 1 1121111 2578999999999876321100 00 0 00 0 1
Q sequence1 156 AFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 156 ~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
...++.+|++++.++.+++..+.+.+
T Consensus 378 ~~~~i~vSa~~g~gi~~L~~~i~~~~ 403 (482)
T 1XZP_A 378 DRHMVKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp STTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 24678899999999999888776543
##### No 364 #####
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>2E87_A Hypothetical protein PH1320; GTP-binding, GTPase, Obg, bundle, GDP; HET: SO4, GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.30 E-value=1.6e-15 Score=113.33 Aligned_cols=156 Identities=20% Similarity=0.197 Sum_probs=89.0 Template_Neff=9.000
Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGLEDYD---------RLRPLSY 77 (184)
Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~ 77 (184)
..+++++|.+|+|||||++.+........ ...++...... ........+.+||+||..... .......
T Consensus 167 ~~~v~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~T~~~~~~--~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~~~ 244 (357)
T 2E87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVG--QFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEE--EEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCCCcEEEE--EeEcCCEEEEEEeCCCCCCCChhhhcHHHHHHHHHHH
Confidence 45799999999999999999876432211 11111111111 122234568899999964211 0011111
Q sequence1 78 PDTDVILMCFSIDSPDSLE--NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIG 155 (184)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
..+|++++|+|++...... .....+ ..+.......|+++|+||+|+....... . ...+....+
T Consensus 245 ~~ad~il~v~D~s~~~~~~~~~~~~~l-~~i~~~~~~~pvivV~nK~Dl~~~~~~~-~-------------~~~~~~~~~ 309 (357)
T 2E87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLF-EEVHGEFKDLPFLVVINKIDVADEENIK-R-------------LEKFVKEKG 309 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHH-HHHHHHTTTSCEEEEECCTTTCCHHHHH-H-------------HHHHHHHTT
T ss_pred HhcCEEEEEEeCCCcCCCCHHHHHHHH-HHHHHhhCCCCEEEEEeChHhCCHHHHH-H-------------HHHHHHHcC
Confidence 2368899999988754321 111111 1111112357999999999997643210 0 001111112
Q sequence1 156 AFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 156 ~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
..++.+|++++.|++++++++.+.+
T Consensus 310 -~~~~~iSa~~~~gi~~l~~~i~~~l 334 (357)
T 2E87_A 310 -LNPIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp -CCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred -CCCEEeEcCCCcCHHHHHHHHHHHH
Confidence 4678899999999999998877654
##### No 365 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>5LMV_a 30S ribosomal protein S2, 30S; ribosome, translation, initiation factors, 30S; HET: G7M, 4SU, OMC, 5MU, PSU; 4.9A {Thermus thermophilus HB8}
Probab=99.30 E-value=1.7e-15 Score=119.65 Aligned_cols=163 Identities=23% Similarity=0.241 Sum_probs=97.8 Template_Neff=9.200
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
.+.++|+++|..++|||||++++..........+..... ............+.+||+||++.+...+......+|++++
T Consensus 71 ~~~~~V~ivG~~~~GKSTLl~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~vIl 149 (571)
T 5LMV_a 71 RRPPVVVIMGHVDHGKTTLLDYLRKSRIAEKEAGGITQH-VGAFEVKTPQGTVVFIDTPGHEAFTTIRQRGAKVADIAVI 149 (571)
T ss_dssp CCCCCEEECCCTTSSHHHHHHHHHHHHHCCCCCCSCSCC-CCCEEEECSSCEEEECCSSTTTTSSCSCCSSCCCSSEEEE
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCccccccCCccee-eEEEEeecCCceEEEEeCCCchHHHHHHHHhhccCCEEEE
Confidence 456789999999999999999998655432221111111 1111222223468899999998887777777888999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184)
|++..+.. ..... .+...+.. ...|+++++||+|+...... ........ .............++++|++
T Consensus 150 Vvda~~g~-~~~t~-e~l~~~~~--~~~piiVviNK~D~~~~~~~-~~~~~l~~------~~~~~~~~~~~~~~v~vSa~ 218 (571)
T 5LMV_a 150 VIAADDGI-MPQTE-EAIAHAKA--AGAKLIFAINKIDLPQADPE-KVKRQLME------RGFVPEEYGGDAIVIPISAK 218 (571)
T ss_dssp EECSSSCS-CHHHH-HHHHHHHH--HCCCCEEEECCCSSTTCCHH-HHHHHHHH------HTCCBTTTSSSBEEEECBTT
T ss_pred EEeCCCCC-CHHHH-HHHHHHHH--hCCCEEEEEECCCCCCCCHH-HHHHHHHH------cCCCchhcCCCccEEEeecC
Confidence 99987632 11111 12222222 25789999999998653211 00000000 00000001112568889999
Q sequence1 166 TKDGVREVFEMATRA 180 (184)
Q Consensus 166 ~~~~i~~~~~~~~~~ 180 (184)
++.|+.+++.++...
T Consensus 219 ~g~gi~~l~~~i~~~ 233 (571)
T 5LMV_a 219 TGQGVQDLLEMILLL 233 (571)
T ss_dssp TTBSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999888776543
##### No 366 #####
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>1G7S_A TRANSLATION INITIATION FACTOR IF2/EIF5B; translational GTPase, TRANSLATION; HET: GDP; 2.0A {Methanothermobacter thermautotrophicus} SCOP: b.43.3.1, c.37.1.8, c.20.1.1
Probab=99.29 E-value=1.8e-15 Score=119.92 Aligned_cols=117 Identities=16% Similarity=0.163 Sum_probs=75.5 Template_Neff=9.100
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY---V--------------ADIEVDGKQVELALWDTAGLED 68 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~---~--------------~~~~~~~~~~~~~i~D~~g~~~ 68 (184)
.+.++|+++|..++|||||+.++..........+...... . ...........+.+||+||++.
T Consensus 3 ~r~~~I~vlG~~~sGKTTLl~~L~~~~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPGh~~ 82 (594)
T 1G7S_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCccccccCCccceeeeeEEEehhhhccchhchhhccccccCCCcEEEEeCCCCHH
Confidence 4578999999999999999999876543221111100000 0 0011111235688999999998
Q sequence1 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184)
+...+......+|++++|+|+++. +......+...+.. ...|+++++||+|+..
T Consensus 83 f~~~~~~~~~~~D~~ilVvda~~g--~~~qt~e~l~~l~~--~~~p~IvviNK~D~~~ 136 (594)
T 1G7S_A 83 FTTLRKRGGALADLAILIVDINEG--FKPQTQEALNILRM--YRTPFVVAANKIDRIH 136 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTC--CCHHHHHHHHHHHH--TTCCEEEEEECGGGST
T ss_pred HHHHHHHHHhcCCEEEEEEeCCCC--CcHHHHHHHHHHHh--cCCCEEEEEecccccC
Confidence 888888788899999999998763 22221222233322 2588999999999865
##### No 367 #####
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>5ADY_6 50S RIBOSOMAL PROTEIN L32, 50S; RIBOSOME, RIBOSOME RESCUE; HET: GNP; 4.5A {ESCHERICHIA COLI K-12}
Probab=99.29 E-value=1.9e-15 Score=115.36 Aligned_cols=156 Identities=21% Similarity=0.196 Sum_probs=91.4 Template_Neff=8.700
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-TVFENYVADIEVDGKQVELALWDTAGLEDYDR--L------RPLSY 77 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--~------~~~~~ 77 (184)
..++|+++|.+++|||||++++........... ++.......+... ....+.+||++|...... . ....+
T Consensus 196 ~~~~V~ivG~~naGKSSLln~L~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~~f~~tl~~~ 274 (426)
T 5ADY_6 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVA-DVGETVLADTVGFIRHLPHDLVAAFKATLQET 274 (426)
T ss_dssp CCCBEEEECBTTSSHHHHHHHHHTCCCCCCSSSSCCCSCCEEECCCT-TTSCCEEECCCCBCTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEccCCCchHHHHHHHhcCCccccccCCccccccceeEecC-CCCeEEEEeCCCchhcCCHHHHHHHHHHHHHH
Confidence 457899999999999999999987543221111 1111111111111 123578999999643210 1 11224
Q sequence1 78 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
..+|++++|+|.+++...... ..+...+... ....|+++|+||+|+........ . ... ...
T Consensus 275 ~~ad~il~ViD~s~~~~~~~~-~~~~~~l~~l~~~~~pii~V~NK~Dl~~~~~~~~------------~----~~~-~~~ 336 (426)
T 5ADY_6 275 RQATLLLHVIDAADVRVQENI-EAVNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRI------------D----RDE-ENK 336 (426)
T ss_dssp HHCSEEEEEECSSCTTHHHHH-HHHHHHHHHTSCTTSCEEEEECCHHHHTCCSCCC------------C----CSS-SSC
T ss_pred HhCCEEEEEeecCChhHHHHH-HHHHHHHHHhcccCCCEEEEEEchhcCCCCcccc------------c----ccc-cCC
Confidence 678999999999875322111 2222222211 12589999999999986432100 0 000 012
Q sequence1 157 FGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
..++.+|++++.|+.+++..+...+
T Consensus 337 ~~~v~iSa~~g~gi~~L~~~i~~~l 361 (426)
T 5ADY_6 337 PNRVWLSAQTGAGIPQLFQALTERL 361 (426)
T ss_dssp CCCCBCCTTTTTTHHHHHHHHHHHS
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 4577899999999999998877654
##### No 368 #####
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>2QTH_A GTP-binding protein; beta-alpha-barrels, GTP-binding, Nucleotide-binding, NUCLEOTIDE BINDING; HET: GDP, ACT; 2.0A {Sulfolobus solfataricus P2}
Probab=99.29 E-value=2e-15 Score=112.99 Aligned_cols=163 Identities=16% Similarity=0.112 Sum_probs=90.3 Template_Neff=8.800
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-PTVFENYVADIEVDGKQVELALWDTAGLEDY--DRLRP------LS 76 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~~------~~ 76 (184)
...++|+++|..++|||||++++.......... .++.......+.. ....+.+||++|.... ...+. ..
T Consensus 177 ~~~~~V~vvG~~~aGKSsLin~L~~~~~~~~~~~~~T~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~l~~~~~~tl~~ 254 (364)
T 2QTH_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI--NNRKIMLVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp --CCEEEEEEBTTSSHHHHHHHHHTC-----------CCSCEEEEEE--TTEEEEEEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred cCCCEEEEEccCCCchHHHHHHHhCCCcccCCcccccCCCeeEEEEe--CCeEEEEEeCCcccCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999998654321111 1111111111111 2246789999996432 11111 12
Q sequence1 77 YPDTDVILMCFSIDSPDSL-ENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR- 153 (184)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 153 (184)
...+|++++|+|.+.+... ......+...+... ....|+++|+||+|+....... .... .......
T Consensus 255 ~~~ad~il~VvD~s~~~~~~~~~~~~~~~~l~~l~~~~~piivV~NK~D~~~~~~~~-~~~~----------~~~~~~~~ 323 (364)
T 2QTH_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYK-KLDL----------VEKLSKEL 323 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHH-HHHH----------HHHHHHHH
T ss_pred HhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHHhCCCCCCEEEEEECHHhCChhHHH-HHHH----------HHHHHHHh
Confidence 4568999999998875432 11112222222221 1258999999999998643210 0000 0000000
Q sequence1 154 -IGAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 154 -~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
.....++.+||+++.|+.++++++.+.+
T Consensus 324 ~~~~~~~v~iSa~~g~gi~~L~~~i~~~l 352 (364)
T 2QTH_A 324 YSPIFDVIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp CSCEEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 0124578899999999999998887654
##### No 369 #####
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>5XKT_B Urease accessory protein UreG; SIMIBI Class GTPase, HYDROLASE; HET: GNP; 1.8A {Klebsiella pneumoniae subsp. rhinoscleromatis SB3432}
Probab=99.28 E-value=2.3e-15 Score=102.54 Aligned_cols=86 Identities=15% Similarity=0.149 Sum_probs=55.3 Template_Neff=12.100
Q sequence1 78 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF 157 (184)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
..+|++++|+|.++..++.. ..... ...|+++|+||+|+...... ...... .. ........
T Consensus 113 ~~~d~~i~v~d~~~~~~~~~------~~~~~--~~~~i~~v~nk~D~~~~~~~--~~~~~~------~~---~~~~~~~~ 173 (200)
T 5XKT_B 113 ELADLTIYVIDVAEGEKIPR------KGGPG--ITRSDFLVINKTDLAPYVGA--SLKVMA------SD---TQRMRGDR 173 (200)
T ss_dssp TTCSEEEEEEEGGGCTTHHH------HCCHH--HHHSSEEEEECGGGHHHHTC--CHHHHH------HH---HHHHHTTS
T ss_pred hhCCceEEEEECCCCccccC------CCCCC--CccceEEEEEchhcchhccc--cHHHHH------HH---HHHhcCCC
Confidence 45789999999987654433 11111 25899999999999865321 111000 00 01111236
Q sequence1 158 GYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 158 ~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
.++++|+.++.|+.+++.++.+.+.
T Consensus 174 ~~~~~Sa~~~~~~~~l~~~l~~~~~ 198 (200)
T 5XKT_B 174 PWTFTNLKQGDGLSTIIAFLEDKGM 198 (200)
T ss_dssp CEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred CeEEcccCCCCcHHHHHHHHHHccc
Confidence 7899999999999999999887664
##### No 370 #####
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>5UCV_A Probable GTP-binding protein EngB; SSGCID, GDP, YsxC, engB, ribosome; HET: GOL, GDP; 1.8A {Neisseria gonorrhoeae (strain NCCP11945)}
Probab=99.28 E-value=2.7e-15 Score=104.68 Aligned_cols=163 Identities=11% Similarity=0.032 Sum_probs=86.6 Template_Neff=9.400
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLEDY------DRLRP---- 74 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~------~~~~~---- 74 (184)
...++|+++|.+++|||||++.+..........+.. .......+... ....+||+||.... +..+.
T Consensus 29 ~~~~~I~vvG~~~~GKSsll~~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~lvDt~G~~~~~~~~~~~~~~~~~~~ 105 (217)
T 5UCV_A 29 DTPLEIAFVGRSNAGKSSAINTLTNHVRLAYVSKTPGRTQHINFFELQ---NGNFMVDLPGYGYAQVPEAVRAHWVNLLG 105 (217)
T ss_dssp CCSSEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEECT---TSCEEEECCCBCCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHhCCccceecCCCCCcceeeeEEEec---CCEEEEECCCCCcccCCHHHHHHHHHHHH
Confidence 456789999999999999999998753211000000 00001111111 13468999996321 11121
Q sequence1 75 LSYP---DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA 151 (184)
Q Consensus 75 ~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (184)
.+.. .++++++++|..... ......+...+.. ...|+++|+||+|+.............. .......
T Consensus 106 ~~~~~~~~~~~iv~vid~~~~~--~~~~~~~l~~~~~--~~~pviiV~nK~D~~~~~~~~~~~~~~~------~~~~~~~ 175 (217)
T 5UCV_A 106 DYLRHRKQLIGLVLIMDARHPL--KELDIRMLDFFHT--TGRPVHILLSKADKLSKNEQIKTLSQVK------KLLKPYS 175 (217)
T ss_dssp HHHHHCTTEEEEEEEEETTSCC--CHHHHHHHHHHHT--TCCCEEEEEECGGGSCHHHHHHHHHHHH------HHHGGGG
T ss_pred HHHHhcCCeeEEEEEecCCCCC--CHHHHHHHHHHHH--hCCCEEEEEeChhhCCHHHHHHHHHHHH------HHHHhcc
Confidence 1111 367888888877542 1111112222221 3588999999999986432211111000 0000000
Q sequence1 152 NRIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 152 ~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
....+.++.+|+.++.|+.+++.++...+.
T Consensus 176 -~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 205 (217)
T 5UCV_A 176 -DRQNISVQLFSSLKKQGIDEANRTVGSWFD 205 (217)
T ss_dssp -GTSCEEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -ccCCCcEEEeeCCCcCCHHHHHHHHHHHhh
Confidence 112367899999999999999887766543
##### No 371 #####
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>4W7G_A Dynein Light Intermediate Chain; molecular motor, G protein, intracellular; 2.1A {Chaetomium thermophilum}
Probab=99.27 E-value=2.9e-15 Score=116.92 Aligned_cols=172 Identities=8% Similarity=0.088 Sum_probs=103.0 Template_Neff=7.100
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPE---------VYVPTVFENYVA-DIEVD---GKQVELALWDTA-GLEDYD 70 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~---------~~~~t~~~~~~~-~~~~~---~~~~~~~i~D~~-g~~~~~ 70 (184)
.....+|+|+|..++|||+|+++|....... ...++....+.. .+... .....+.+|+++ |...+.
T Consensus 49 ~~~~k~IlVLG~~~sGKSsLl~~L~~~~~~~~~~~~~~~~~~~~t~al~Y~~~dv~d~~~ed~~arl~iw~l~~g~~~f~ 128 (552)
T 4W7G_A 49 RLPEKNIILLGGTVDSQREFFEALSSNDRRTLDRSSSRSPPVANSFALGYTYYDVLDADHEDTLARISIYTLTDPSPAFA 128 (552)
T ss_dssp CCCEEEEEEEECCHHHHHHHHHHHHSTTBC---------------CCCEEEEEEEECTTSCSEEEEEEEEEECSCCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHcCCCchhcCcccCCCCCCCCceeeeEEEEEEecCCCCCcceEEEEEEcCCCCHHHH
Confidence 3456789999999999999999998765321 111111111111 11111 134688999995 766777
Q sequence1 71 RLRPLSYPD----TDVILMCFSIDSPDSLENIPEKWTPEVKHFC------------------------------------ 110 (184)
Q Consensus 71 ~~~~~~~~~----~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------------------------------ 110 (184)
.++..++.. .+++++|+|+..+.++......|...+....
T Consensus 129 ~LL~~~l~~~si~~t~vvIvlD~s~P~s~~~~L~~Wl~~L~~~~~~l~~e~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 208 (552)
T 4W7G_A 129 SLLQPILTPDSIPNTLIVILLDWSQPWKWMRQLREWILLLRTVLVSLSHECKATMEEVMLSWRDRGRGGGINLDGSMTAP 208 (552)
T ss_dssp GGGGGGCCTTTGGGEEEEEEEETTCGGGHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTSTTSSSSBCTTSCBC--
T ss_pred HHhhHhcCcccCCCeEEEEEEcCCChHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC
Confidence 677666665 7899999999998877544445544433211
Q sequence1 111 ------------------PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 172 (184)
Q Consensus 111 ------------------~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 172 (184)
...|++||+||+|+............. ......+....++..++ ..++++|++.+.++..
T Consensus 209 ~~~~~~~~pl~~g~~~~~lgiPliVV~~KsD~~~~le~~~~~~ee-~~d~I~q~LR~i~lk~G-AsLiytS~~~~~nl~~ 286 (552)
T 4W7G_A 209 TADAEPALPLGPGEWEDGLGLPLCVVCQNAEKMEYLEKTQGWKEE-EFDVVLQFMRTVLLKHG-ASLIYTTPSVPSQLPS 286 (552)
T ss_dssp -------CCCCTTTTTTCCSSCEEEEEECTHHHHHHHHHSCCCHH-HHHHHHHHHHHHHHTTT-CEEEECCTTSCCSHHH
T ss_pred CCCCCCCCCCCCCccccCCCCCEEEEEeCHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHcC-CEEEEECCCCcchHHH
Confidence 258999999999998632111000000 00111222333444443 5788999999888887
Q sequence1 173 VFEMAT 178 (184)
Q Consensus 173 ~~~~~~ 178 (184)
++..++
T Consensus 287 L~h~~l 292 (552)
T 4W7G_A 287 LIHSSL 292 (552)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 765443
##### No 372 #####
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>4KJZ_B Translation initiation factor IF-2; Translation Initiation Factor/IF2 Superfamily, GTPase; HET: GDP; 2.8A {Thermus thermophilus}
Probab=99.27 E-value=3e-15 Score=115.74 Aligned_cols=162 Identities=23% Similarity=0.245 Sum_probs=90.5 Template_Neff=9.700
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
...+.|+++|..++|||||++++..........+..... ............+.+||+||++.+...+......+|++++
T Consensus 70 ~~~~~v~iiG~~~~GKStLl~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~D~vil 148 (473)
T 4KJZ_B 70 RRPPVVVIMGHVDHGKTTLLDYLRKSRIAEKEAGGITQH-VGAFEVKTPQGTVVFIDTPGHEAFTTIRQRGAKVADIAVI 148 (473)
T ss_dssp BCCCEEEEECCTTTTHHHHHHHHHTTTCC-------CCC-SSEEEEEETTEEEEEECCC-----CCHHHHHSCCCSEEEE
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhcCCCcchhcCCceee-EEEEEEEcCCCeEEEEECCCcHHHHHHHHHHhhcCCEEEE
Confidence 456789999999999999999987654332211111111 1111122223468899999998877777777788999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184)
|+|+.+... ... ..+...+.. ...|+++++||+|+...... ........ .............++++|++
T Consensus 149 Vvd~~~~~~-~~~-~e~l~~~~~--~~~piivviNK~D~~~~~~~-~~~~~l~~------~~~~~~~~~~~~~~v~iSa~ 217 (473)
T 4KJZ_B 149 VIAADDGIM-PQT-EEAIAHAKA--AGAKLIFAINKIDLPQADPE-KVKRQLME------RGFVPEEYGGDAIVIPISAK 217 (473)
T ss_dssp EEETTTCSC-HHH-HHHHHHHHH--TTCEEEEEEECCSSTTCCHH-HHHHHHHH------TTCCBGGGTCSBCEEEECTT
T ss_pred EEecCCCCC-HHH-HHHHHHHHH--hCCCEEEEEecccCCCCCHH-HHHHHHHH------CCCCcHHhCCceEEEEeecC
Confidence 999876321 111 112222221 25789999999998653211 00000000 00000000112568899999
Q sequence1 166 TKDGVREVFEMATR 179 (184)
Q Consensus 166 ~~~~i~~~~~~~~~ 179 (184)
++.|+.+++.++..
T Consensus 218 ~g~gi~~l~~~l~~ 231 (473)
T 4KJZ_B 218 TGQGVQDLLEMILL 231 (473)
T ss_dssp TCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 99999998877654
##### No 373 #####
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>4KJZ_C Translation initiation factor IF-2; Translation Initiation Factor/IF2 Superfamily, GTPase; HET: GDP; 2.8A {Thermus thermophilus}
Probab=99.26 E-value=3.6e-15 Score=115.29 Aligned_cols=162 Identities=23% Similarity=0.236 Sum_probs=89.1 Template_Neff=9.700
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 85 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (184)
...+.|+++|..++|||||++++..........+..... ............+.+||+||++.+...+......+|++++
T Consensus 70 ~~~~~v~iiG~~~~GKStLl~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~D~~il 148 (473)
T 4KJZ_C 70 RRPPVVVIMGHVDHGKTTLLDYLRKSRIAEKEAGGITQH-VGAFEVKTPQGTVVFIDTPGHEAFTTIRQRGAKVADIAVI 148 (473)
T ss_dssp BCCCEEECEECTTTTHHHHHHHHHHHHCC-------CCC-CSEEEEEETTEEEEEECCSSCCTTCSHHHHHSCCCSBCE-
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCCCCeeee-EEEEEEEeCCceEEEEECCCchhHHHHHHHHhccCCEEEE
Confidence 456789999999999999999988654332211111111 1111112223468899999998887777777788999999
Q sequence1 86 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165 (184)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (184)
|+++.+... .... .+...+.. ...|+++++||+|+...... ........ .............++++|++
T Consensus 149 Vvd~~~~~~-~~~~-~~l~~~~~--~~~piivviNK~D~~~~~~~-~~~~~l~~------~~~~~~~~~~~~~~v~iSa~ 217 (473)
T 4KJZ_C 149 VIAADDGIM-PQTE-EAIAHAKA--AGAKLIFAINKIDLPQADPE-KVKRQLME------RGFVPEEYGGDAIVIPISAK 217 (473)
T ss_dssp EEETTTCSC-TTHH-HHHHC----------CEEEECTTSTTCCHH-HHHHHHHH------TTCCBGGGTCSB-CEEECTT
T ss_pred EEeCCCCCc-HHHH-HHHHHHHH--hCCCEEEEEEcccCCCCCHH-HHHHHHHH------cCCChHHhCCCccEEEeecC
Confidence 999876321 1111 11122211 25789999999998653211 00000000 00000000112568899999
Q sequence1 166 TKDGVREVFEMATR 179 (184)
Q Consensus 166 ~~~~i~~~~~~~~~ 179 (184)
++.|+.+++.++..
T Consensus 218 ~g~gi~~l~~~l~~ 231 (473)
T 4KJZ_C 218 TGQGVQDLLEMILL 231 (473)
T ss_dssp TCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 99999988877654
##### No 374 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3WBI_A Eukaryotic translation initiation factor 5B; flexible, eukaryotic translation initiation, eIF1A; 2.35A {Saccharomyces cerevisiae}
Probab=99.26 E-value=3.9e-15 Score=118.27 Aligned_cols=118 Identities=17% Similarity=0.107 Sum_probs=60.7 Template_Neff=8.700
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIE----------------VDGKQVELALWDTAGLE 67 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~----------------~~~~~~~~~i~D~~g~~ 67 (184)
..+.++|+++|..++|||||++++..........+..... ....+. .......+.+||+||++
T Consensus 6 ~~r~~~V~VlG~~d~GKTtLl~~L~~~~~~~~e~~git~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iDtPGh~ 85 (606)
T 3WBI_A 6 DLRSPICCILGHVDTGKTKLLDKIRQTNVQGGEAGGITQQIGATYFPIDAIKAKTKVMAEYEKQTFDVPGLLVIDTPGHE 85 (606)
T ss_dssp CBCCCEEEEECCGGGTHHHHHHHHHCSEETTEECTTCEEETTEEEEEHHHHHHHHGGGGGTSCCCCCSSEEEEECC----
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCCCCccccceeEEEechhhhhhhhHhhhhccccccCCcEEEEeCCCCH
Confidence 3567899999999999999999997654322211111000 000000 01112347799999999
Q sequence1 68 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184)
.+...+......+|++++|+|+.+....+ ..+. ...+.. ...|+++++||+|+..
T Consensus 86 ~f~~~~~~g~~~aDiaILVvd~~~g~~~q-t~e~-l~~l~~--~~~p~IVv~NKiD~~~ 140 (606)
T 3WBI_A 86 SFSNLRSRGSSLCNIAILVIDIMHGLEQQ-TIES-IKLLRD--RKAPFVVALNKIDRLY 140 (606)
T ss_dssp ----------CCCSEEEEEEETTTCCCHH-HHHH-HHHHTC--CEE---EEEECGGGST
T ss_pred HHHhHHHHHhccCCEEEEEEeCCCCCCHH-HHHH-HHHHHH--hCCCEEEEEeCCCCCC
Confidence 99888888889999999999998742221 1122 222222 2578999999999875
##### No 375 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2QTF_A GTP-binding protein; beta-alpha-barrels, GTP-binding, Nucleotide-binding, NUCLEOTIDE BINDING; HET: ACT; 2.0A {Sulfolobus solfataricus P2}
Probab=99.25 E-value=4.3e-15 Score=111.26 Aligned_cols=163 Identities=16% Similarity=0.117 Sum_probs=90.4 Template_Neff=8.800
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-PTVFENYVADIEVDGKQVELALWDTAGLEDYD--RLRPL------S 76 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~------~ 76 (184)
...++|+++|.+++|||||++++.......... .++.......... ....+.+||++|..... ..+.. .
T Consensus 177 ~~~~~V~vvG~~naGKStLin~L~~~~~~~~~~~~~T~~~~~~~~~~--~~~~~~l~Dt~G~~~~~p~~l~~~~~~tl~~ 254 (364)
T 2QTF_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI--NNRKIMLVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEE--TTEEEEEEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred cCCCEEEEEecccccHHHHHHHHhCCCCCCcCCCCCCCCCeEEEEEe--CCcEEEEEcCCChhcCCCHHHHHHHHHHHHH
Confidence 345789999999999999999998654321111 1111111111111 22467899999964321 11111 2
Q sequence1 77 YPDTDVILMCFSIDSPDSL-ENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI 154 (184)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
...+|++++|+|.+.+... ......+...+... ....|+++|+||+|+....... .... ........
T Consensus 255 ~~~aD~il~ViD~s~~~~~~~~~~~~~~~~l~~l~~~~~piiiV~nK~D~~~~~~~~-~~~~----------~~~~~~~~ 323 (364)
T 2QTF_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYK-KLDL----------VEKLSKEL 323 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHH-HHHH----------HHHHHHHH
T ss_pred HhcCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCCCCCCEEEEEECHHhCCHHHHh-hHHH----------HHHHHHHh
Confidence 4568999999998875422 11112222222221 2258999999999998643211 0000 00000000
Q sequence1 155 --GAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 155 --~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
....++++|++++.|+.++++.+...+
T Consensus 324 ~~~~~~~v~iSa~~g~gi~~L~~~i~~~l 352 (364)
T 2QTF_A 324 YSPIFDVIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp CSCEEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCCCCEEEeeCCCCCCHHHHHHHHHHHh
Confidence 124578899999999999998877654
##### No 376 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3P1J_D GTPase IMAP family member 2; immunity, structural genomics consortium, gtpase; HET: UNX; 2.58A {Homo sapiens}
Probab=99.25 E-value=4.7e-15 Score=101.55 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=65.1 Template_Neff=12.200
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYD--------RL---R 73 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~---~ 73 (184)
.+.++|+++|..|+|||+|++++..........+... ...............+.+||++|..... .+ +
T Consensus 3 ~~~~~i~v~G~~~~GKs~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~ 82 (209)
T 3P1J_D 3 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 82 (209)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHTSCCSCC-----CCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCcceeEEEEEEEEECCeEEEEEeCCCCCCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999987654332211110 1111111122234568899999976432 11 1
Q sequence1 74 PLSYPDTDVILMCFSIDSPDSLE-NIPEKWTPEVKHFCPNVPIILVGNKKDLRND 127 (184)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~ 127 (184)
......++++++|+++....... .....+...........|+++++||.|+...
T Consensus 83 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~~k~d~~~~ 137 (209)
T 3P1J_D 83 LLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 137 (209)
T ss_dssp HHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEEC-------
T ss_pred HhcCCCCCEEEEEEEHhhCCHHHHHHHHHHHHHHCCCCCCCCEEEEEccccCCCh
Confidence 22233458999999987544332 2222222222222246789999999998764
##### No 377 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3KXI_A GTP-binding protein (HflX); SsGBP, HflX, GTPase, Mg++ ion; HET: GDP; 2.65A {Sulfolobus solfataricus}
Probab=99.25 E-value=5e-15 Score=110.93 Aligned_cols=163 Identities=16% Similarity=0.108 Sum_probs=91.2 Template_Neff=8.800
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-PTVFENYVADIEVDGKQVELALWDTAGLEDYD--RLRPL------S 76 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~------~ 76 (184)
...++|+++|.+++|||||++++.......... .++.......... ....+.+||++|..... ..+.. .
T Consensus 177 ~~~~~V~vvG~~naGKStLin~L~~~~~~~~~~~~~T~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~l~~~~~~tl~~ 254 (364)
T 3KXI_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI--NNRKIMLVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp CSSCEEEEECBTTSSHHHHHHHHTTCC------------CCEEEEEE--TTEEEEEEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred cCCCEEEEEecCCCchHHHHHHHhCCCccCCCcccccCCCeeEEEEe--CCeEEEEEcCCCccCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999988654321111 1111111111111 23467899999964321 11111 2
Q sequence1 77 YPDTDVILMCFSIDSPDSL-ENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR- 153 (184)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 153 (184)
...+|++++|+|.+.+.+. ......+...+... ....|+++|+||+|+....... .... ...+...
T Consensus 255 ~~~aD~il~ViD~s~~~~~~~~~~~~~~~~l~~l~~~~~piiiV~nK~D~~~~~~~~-~~~~----------~~~~~~~~ 323 (364)
T 3KXI_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYK-KLDL----------VEKLSKEL 323 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHTTCCSCCEEEEEECTTSCCSCHHH-HHHH----------HHHHHHHH
T ss_pred hhcCCEEEEEEECCCChhHHHHHHHHHHHHHHHhCccCCCEEEEEeCHHHCChhHHH-HHHH----------HHHHHHHh
Confidence 4568999999998875432 11112222222221 2258999999999998643211 0000 0000000
Q sequence1 154 -IGAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 154 -~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
.....++++||+++.|+.++++.+...+
T Consensus 324 ~~~~~~~i~iSa~~g~gi~~L~~~i~~~l 352 (364)
T 3KXI_A 324 YSPIFDVIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp CSCEEEEEECCTTTTTTHHHHHHHHHHHH
T ss_pred cCCCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 0124578899999999999998877654
##### No 378 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4RD4_A Translation initiation factor 2 subunit; Rossmann fold, TRANSLATION; HET: GNP; 1.3A {Sulfolobus solfataricus}
Probab=99.24 E-value=6.2e-15 Score=111.95 Aligned_cols=168 Identities=15% Similarity=0.095 Sum_probs=98.6 Template_Neff=10.800
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVF--ENYVA-DI------------------------EVD 52 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~---~~t~~--~~~~~-~~------------------------~~~ 52 (184)
+...+..+|+++|..++|||||++++++....... ..... ..+.. .. ...
T Consensus 4 ~~~~~~~~I~v~G~~~~GKStLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (415)
T 4RD4_A 4 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEP 83 (415)
T ss_dssp CCCCCCEEEEEECSTTSSHHHHHHHHHSCCCCCSHHHHHHTSCCSCEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCC
T ss_pred CcCCCCeEEEEEcCCCCCHHHHHHHHhCCCCcCCchHHhcCCeeEEeeeeeeeeecccCCCCcceecCcccccCCCCCCc
Confidence 45677899999999999999999999764221110 00000 00000 00 000
Q sequence1 53 GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRR 132 (184)
Q Consensus 53 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~ 132 (184)
.....+.+||+||++.+...+......+|++++|+|..+........+.+.. +... ...|+++++||+|+........
T Consensus 84 ~~~~~i~l~D~pG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~~~~~~l~~-~~~~-~~~~~ivv~nK~D~~~~~~~~~ 161 (415)
T 4RD4_A 84 KFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVA-LGII-GVKNLIIVQNKVDVVSKEEALS 161 (415)
T ss_dssp EEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHH-HHHH-TCCCEEEEEECGGGSCHHHHHH
T ss_pred ccceeEEEEeCCCCHHHHHHHHHHhhcCCEEEEEEECCCCCCchhHHHHHHH-HHHh-CCCEEEEEEecccCCCHHHHHH
Confidence 1124688999999887766666677789999999998865323333222221 2111 2358999999999876432111
Q sequence1 133 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRA 180 (184)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184)
...+... ..... ......++.+|+.++.++.++++++.+.
T Consensus 162 ~~~~i~~------~~~~~--~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 201 (415)
T 4RD4_A 162 QYRQIKQ------FTKGT--WAENVPIIPVSALHKINIDSLIEGIEEY 201 (415)
T ss_dssp HHHHHHH------HHTTS--TTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHH------HHhcC--CcccCCEEEccCCCccCHHHHHHHHHHH
Confidence 1111000 00000 0112568889999999999888876554
##### No 379 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4RJL_A Translation initiation factor 2 subunit; gamma subunit, g-protein, translation, translation; HET: FMT, 7PG, GCP; 1.6401A {Sulfolobus solfataricus}
Probab=99.24 E-value=6.2e-15 Score=111.95 Aligned_cols=168 Identities=15% Similarity=0.095 Sum_probs=98.6 Template_Neff=10.800
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVF--ENYVA-DI------------------------EVD 52 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~---~~t~~--~~~~~-~~------------------------~~~ 52 (184)
+...+..+|+++|..++|||||++++++....... ..... ..+.. .. ...
T Consensus 4 ~~~~~~~~I~v~G~~~~GKStLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (415)
T 4RJL_A 4 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEP 83 (415)
T ss_dssp CCCCCCEEEEEECSTTSSHHHHHHHHHSCCCCCSHHHHHHTSCCSCEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCC
T ss_pred CcCCCCeEEEEEcCCCCCHHHHHHHHhCCCCcCCchHHhcCCeeEEeeeeeeeeecccCCCCcceecCcccccCCCCCCc
Confidence 45677899999999999999999999764221110 00000 00000 00 000
Q sequence1 53 GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRR 132 (184)
Q Consensus 53 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~ 132 (184)
.....+.+||+||++.+...+......+|++++|+|..+........+.+.. +... ...|+++++||+|+........
T Consensus 84 ~~~~~i~l~D~pG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~~~~~~l~~-~~~~-~~~~~ivv~nK~D~~~~~~~~~ 161 (415)
T 4RJL_A 84 KFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVA-LGII-GVKNLIIVQNKVDVVSKEEALS 161 (415)
T ss_dssp EEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHH-HHHH-TCCCEEEEEECGGGSCHHHHHH
T ss_pred ccceeEEEEeCCCCHHHHHHHHHHhhcCCEEEEEEECCCCCCchhHHHHHHH-HHHh-CCCEEEEEEecccCCCHHHHHH
Confidence 1124688999999887766666677789999999998865323333222221 2111 2358999999999876432111
Q sequence1 133 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRA 180 (184)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184)
...+... ..... ......++.+|+.++.++.++++++.+.
T Consensus 162 ~~~~i~~------~~~~~--~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 201 (415)
T 4RJL_A 162 QYRQIKQ------FTKGT--WAENVPIIPVSALHKINIDSLIEGIEEY 201 (415)
T ss_dssp HHHHHHH------HHTTS--TTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHH------HHhcC--CcccCCEEEccCCCccCHHHHHHHHHHH
Confidence 1111000 00000 0112568889999999999888876554
##### No 380 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>3L2O_B S-phase kinase-associated protein 1/F-box only; small G protein fold, Ubl; 2.8A {Homo sapiens}
Probab=99.23 E-value=6.3e-15 Score=108.18 Aligned_cols=162 Identities=8% Similarity=-0.040 Sum_probs=99.7 Template_Neff=9.900
Q sequence1 7 IRKKLVIVGD--GACGKTCLLIVNSKDQFPEVYVPTVFENYV------ADIEVDGK-QVELALWDTA------------- 64 (184)
Q Consensus 7 ~~~~i~i~G~--~~~GKtsli~~~~~~~~~~~~~~t~~~~~~------~~~~~~~~-~~~~~i~D~~------------- 64 (184)
...+++++|+ .++|| +++.++..... ..++...... ..+.+.-. ...+.+||++
T Consensus 100 ~~~ki~~~g~~l~~~gk-s~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~ 175 (312)
T 3L2O_B 100 NEPRFAMFGPGLEELNT-SLVLSLMSSEE---LCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREE 175 (312)
T ss_dssp CCCEEEEECTHHHHSSS-CHHHHHTTCGG---GCCEECCSTTTCSSSCCCEEEEETTTEEEEEEECSCCCC---------
T ss_pred CCCchhhcCCCccccCh-HHHHHHhcCCC---cccCCCCCCCccCcccccEEEEeCCCCeEEEEEEEeccHHHHHHhHHH
Confidence 4568899999 99999 77777765433 1111111110 00111111 2678899998
Q sequence1 65 --------------------GLEDYDRLRPLSYPDTDVILMCFSIDSPDSL--ENIPEKWTPEVKH--FCPNVPIILVGN 120 (184)
Q Consensus 65 --------------------g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~--~~~~~~~~vv~n 120 (184)
|++.+...+..++..++++++|+|+++..++ ......+...+.. .....|+++++|
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~vi~v~D~t~~~~~~~~~~~~~l~~~~~~~~~~~~~pivvv~n 255 (312)
T 3L2O_B 176 HTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSC 255 (312)
T ss_dssp ---------------------CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEE
T ss_pred hhHHHhHhhccccCCCcCCCCcceeHHHHHHHHhhCCEEEEEEeccccccccchHHHHHHHHHhccccccCCCcEEEEEe
Confidence 8888888888899999999999999987776 5554444444432 123689999999
Q sequence1 121 KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 121 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
|.|.............. .........+.++++|++++.|+.++|.++.+.+.
T Consensus 256 k~~d~~~~~~~~~~~~~----------l~~~~~~~~~~~~~~Sa~~~~~v~e~~~~L~~~~~ 307 (312)
T 3L2O_B 256 ISQGDVKRMPCFYLAHE----------LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp ESSTTSCBCCHHHHHHH----------TTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred cCCCCccCCCHHHHHHH----------hChhhcCCCeEEEECcCCCCccHHHHHHHHHHHHH
Confidence 75543211100100000 00000011256889999999999999999988764
##### No 381 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>5O8W_A Elongation factor 1-alpha, Elongation factor; PROTEIN-PROTEIN COMPLEX, TRANSLATION, COVALENT MODIFICATION; HET: GLN, MSE, PGE, MLZ, M3L; 1.67A {Saccharomyces cerevisiae}
Probab=99.23 E-value=7.1e-15 Score=113.41 Aligned_cols=158 Identities=12% Similarity=0.068 Sum_probs=89.1 Template_Neff=10.200
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY------------------------V-------PTVFENYVADIEV 51 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~------------------------~-------~t~~~~~~~~~~~ 51 (184)
+.....++|+++|..++|||||+++|+........ . ...... ......
T Consensus 2 ~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~-~~~~~~ 80 (466)
T 5O8W_A 2 GKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITID-IALWKF 80 (466)
T ss_dssp CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCS-CSCEEE
T ss_pred CCCCCcEEEEEEcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCchHHHHHhcCCHHHHhcCceee-eeEEEE
Confidence 45677899999999999999999998743110000 0 000000 000011
Q sequence1 52 DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDS------LENIPEKWTPEVKHFCPNVP-IILVGNKKDL 124 (184)
Q Consensus 52 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~-~~vv~nK~D~ 124 (184)
......+.+||+||+..+...+..+...+|++++|+|...... .....+ +...+.. ...| +++++||+|+
T Consensus 81 ~~~~~~~~liD~PG~~~~~~~~~~~~~~~d~~ilVvd~~~~~~~~~~~~~~~~~~-~l~~~~~--~~~~~~ivvinK~D~ 157 (466)
T 5O8W_A 81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAFT--LGVRQLIVAVNKMDS 157 (466)
T ss_dssp ECSSEEEEEEECCCCTTHHHHHHHSSCCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHHH--TTCCEEEEEEECGGG
T ss_pred ecCCeEEEEEECCCChHHHHHHHHHHccCCEEEEEEEcCCCccccccCCCChHHH-HHHHHHH--hCCCEEEEEEECccC
Confidence 1123468899999998887777777789999999999876421 111111 1222221 1345 8999999998
Q sequence1 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRI----GAFGYMECSAKTKDGVRE 172 (184)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~~i~~ 172 (184)
...... ...... .......... ....++++|+.++.++.+
T Consensus 158 ~~~~~~--~~~~~~------~~i~~~l~~~~~~~~~~~~i~iSa~~g~~i~~ 201 (466)
T 5O8W_A 158 VKWDES--RFQEIV------KETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (466)
T ss_dssp GTTCHH--HHHHHH------HHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred CCCCHH--HHHHHH------HHHHHHHHHhCCCcccCCEeeCCccCCccccc
Confidence 742110 000000 0000111111 125688899999988854
##### No 382 #####
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>3J5Y_B Eukaryotic peptide chain release factor; Translation termination, eRF1, eRF3, tRNAleu; 9.7A {Oryctolagus cuniculus}
Probab=99.23 E-value=7.3e-15 Score=112.07 Aligned_cols=162 Identities=15% Similarity=0.123 Sum_probs=91.3 Template_Neff=10.600
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT-----------------------------VFENY-VADIEVDGK 54 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t-----------------------------~~~~~-~~~~~~~~~ 54 (184)
..+..+|+++|..++|||||+++|............ ..... .........
T Consensus 3 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~ 82 (428)
T 3J5Y_B 3 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 82 (428)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHTTTSSCHHHHHHHHHHHHHTTCGGGTTGGGTCCSHHHHHHTSCSSCEEEEEECS
T ss_pred CCCcEEEEEEeCCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCcchHHHHHHcCCHHHHHcCceEEEEEEEEEcC
Confidence 356789999999999999999988743221110000 00000 000011122
Q sequence1 55 QVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD---SLE---NIPEKWTPEVKHFCPNVP-IILVGNKKDLRND 127 (184)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~-~~vv~nK~D~~~~ 127 (184)
...+.+||+||++.+...+...+..+|++++|+|+.... ++. ...+. ..... ....| +++++||+|+...
T Consensus 83 ~~~i~liD~pG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~e~~~~~~~~~~~~-l~~~~--~~~~~~iivv~nK~D~~~~ 159 (428)
T 3J5Y_B 83 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREH-AMLAK--TAGVKHLIVLINKMDDPTV 159 (428)
T ss_dssp SEEEEEEECCSSSSCHHHHHHHHHTCSEEEEEEECSTTHHHHHTSTTSSHHHH-HHHHH--HTTCCSEEEEEESCSSTTC
T ss_pred CcEEEEEeCCCchhhHHHHHHHHccCCEEEEEEECCCCcccccccCCChhHHH-HHHHH--HhCCCEEEEEEECCCCCCC
Confidence 356789999999888777777778899999999987642 111 11111 11111 12456 8999999998653
Q sequence1 128 EHTRRELAKMKQEPVKPEEGRDMANRI-----GAFGYMECSAKTKDGVREVFE 175 (184)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~~~~~ 175 (184)
........... .....+.... ....++++|+.++.|+.+++.
T Consensus 160 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~~i~~~~~ 206 (428)
T 3J5Y_B 160 NWSIERYEECK------EKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKEQSD 206 (428)
T ss_dssp SSCHHHHHHHH------HHHHHHHHHHHCCCSSSEEEEECCSSSCTTTSSCCS
T ss_pred CCcHHHHHHHH------HHHHHHHHHcCCCCccCcEEEECCccccccCcCccc
Confidence 21111111100 0011111111 125688999999999887753
##### No 383 #####
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>3P1J_C GTPase IMAP family member 2; immunity, structural genomics consortium, gtpase; HET: UNX; 2.58A {Homo sapiens}
Probab=99.22 E-value=8e-15 Score=100.41 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=64.7 Template_Neff=12.200
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYD--------RL---R 73 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~---~ 73 (184)
.+.++|+++|..|+|||+|++++..........+... ...............+.+||++|..... .+ +
T Consensus 3 ~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~ 82 (209)
T 3P1J_C 3 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 82 (209)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHC---------------CCEEEEEEC--CEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CcceEEEEEcCCCCCcchHHHHHccchhhccccCCCcccceeeEEEeEECCeEEEEEeCCCCCCcchhHHHHHHHHHHHH
Confidence 4568999999999999999999987655432221111 1111111222234578899999976432 11 1
Q sequence1 74 PLSYPDTDVILMCFSIDSPDSLE-NIPEKWTPEVKHFCPNVPIILVGNKKDLRND 127 (184)
Q Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~ 127 (184)
......++++++|+++.+..... .....+...........|+++++||.|+...
T Consensus 83 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~~k~d~~~~ 137 (209)
T 3P1J_C 83 LLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 137 (209)
T ss_dssp HHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEEEC---CHH
T ss_pred HhcCCCccEEEEEEecccCCHHHHHHHHHHHHHHCcccccCEEEEEEcchhcCCC
Confidence 22223458999999987643332 2222222222222246789999999998764
##### No 384 #####
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>1F60_A ELONGATION FACTOR EEF1A/ELONGATION FACTOR EEF1BA; protein-protein complex, TRANSLATION; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1, b.44.1.1, c.37.1.8
Probab=99.22 E-value=8.3e-15 Score=112.82 Aligned_cols=120 Identities=13% Similarity=0.010 Sum_probs=73.4 Template_Neff=10.200
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV--------------Y----------V-------PTVFENYVADIEV 51 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~--------------~----------~-------~t~~~~~~~~~~~ 51 (184)
+.....++|+++|..++|||||+++|+....... . . ...... ......
T Consensus 2 ~~~~~~~~I~v~G~~~sGKSTLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~t~~-~~~~~~ 80 (458)
T 1F60_A 2 GKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITID-IALWKF 80 (458)
T ss_dssp CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCS-CSCEEE
T ss_pred CCCCCcEEEEEEcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCchHHHHHhcCCHHHHhcCccee-eeEEEE
Confidence 3456789999999999999999999874311000 0 0 000000 000011
Q sequence1 52 DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDS------LENIPEKWTPEVKHFCPNVP-IILVGNKKDL 124 (184)
Q Consensus 52 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~-~~vv~nK~D~ 124 (184)
......+.+||+||+..+...+..+...+|++++|+|+++... .....+ +...+.. ...| +++++||+|+
T Consensus 81 ~~~~~~~~l~DtPG~~~~~~~~~~~~~~~d~~ilVvd~~~~~~~~~~~~~~~~~~-~l~~~~~--~~~~~iivv~nK~D~ 157 (458)
T 1F60_A 81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAFT--LGVRQLIVAVNKMDS 157 (458)
T ss_dssp ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHHH--TTCCEEEEEEECGGG
T ss_pred ecCCeEEEEEeCCCChHHHHHHHHHHccCCEEEEEEEcCCCchhcccCCCCchHH-HHHHHHH--hCCCEEEEEEECccC
Confidence 1123468899999998887777777789999999999876421 111211 2222222 1344 8999999998
Q sequence1 125 RN 126 (184)
Q Consensus 125 ~~ 126 (184)
..
T Consensus 158 ~~ 159 (458)
T 1F60_A 158 VK 159 (458)
T ss_dssp GT
T ss_pred CC
Confidence 74
##### No 385 #####
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>1WXQ_A GTP-binding protein; GTP-binding protein, Structural Genomics, RIKEN; 2.6A {Pyrococcus horikoshii} SCOP: c.37.1.8, d.15.10.2
Probab=99.22 E-value=8.5e-15 Score=110.94 Aligned_cols=84 Identities=14% Similarity=0.148 Sum_probs=45.9 Template_Neff=9.500
Q sequence1 9 KKLVIVGDGACGKTCLLIVNSKDQFP-EVYVPTVFENYVA--------------------DIEVDG--KQVELALWDTAG 65 (184)
Q Consensus 9 ~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~~t~~~~~~~--------------------~~~~~~--~~~~~~i~D~~g 65 (184)
++|+++|.+++|||||++++...... ..+..++...... .....+ ....+.+||+||
T Consensus 1 ~~i~ivG~~~~GKStl~n~l~~~~~~~~~~~~~t~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~D~pG 80 (397)
T 1WXQ_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CeEEEECCCCCCHHHHHHHHhcCCcccccCCCceeeceEEEEeeeCCCcchhhCCCCCCCcceecCCceeecEEEEecCC
Confidence 47899999999999999999865332 1111111111000 000111 235789999998
Q sequence1 66 -------LEDYDRLRPLSYPDTDVILMCFSIDSP 92 (184)
Q Consensus 66 -------~~~~~~~~~~~~~~~~~~i~v~d~~~~ 92 (184)
...+...+...+..+|++++|+|+...
T Consensus 81 l~~~~~~~~~~~~~~l~~~~~~d~il~Vvd~~~~ 114 (397)
T 1WXQ_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCCChhhCCchHHHHHHHHHhCCEEEEEeccCCC
Confidence 444444555567889999999998764
##### No 386 #####
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>6RA9_B Elongation Factor 1A2; Moonlighting protein, RNA binding protein; HET: GOL, SO4, GDP, POK, GPE, SEP; 2.7A {Oryctolagus cuniculus}
Probab=99.21 E-value=9.4e-15 Score=112.58 Aligned_cols=160 Identities=11% Similarity=0.034 Sum_probs=88.8 Template_Neff=10.300
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY------------------------VPTV-----FENY-VADIEVD 52 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~------------------------~~t~-----~~~~-~~~~~~~ 52 (184)
+...+..+|+++|..++|||||+++|+........ .... .... .......
T Consensus 2 ~~~~~~~~v~i~G~~~sGKSTLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~ 81 (461)
T 6RA9_B 2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFE 81 (461)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCSCCSSSHHHHHHHHHHTSSSCCCCCGGGEEE
T ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCchHHHHHHccCHHHHhcCceeeeeEEEEE
Confidence 45678899999999999999999999743110000 0000 0000 0000111
Q sequence1 53 GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDS------LENIPEKWTPEVKHFCPNVP-IILVGNKKDLR 125 (184)
Q Consensus 53 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~-~~vv~nK~D~~ 125 (184)
.....+.+||+||++.+...+..+...+|++++|+|+++... .....+ +...+.. ...| +++++||+|+.
T Consensus 82 ~~~~~~~liD~pG~~~~~~~~~~~~~~~d~~ilvid~~~~~~~~~~~~~~~~~~-~l~~~~~--~~~~~iivvinK~D~~ 158 (461)
T 6RA9_B 82 TTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTRE-HALLAYT--LGVKQLIVGVNKMDST 158 (461)
T ss_dssp CSSEEEEEEECSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHTSTTCSHHH-HHHHHHH--TTCCCEEEEEECGGGS
T ss_pred cCCeEEEEEeCCCChHHHHHHHHHHccCCEEEEEEEcCCCchhcccCCCchHHH-HHHHHHH--hCCCEEEEEEECcCCC
Confidence 123468899999998887777777889999999999876421 111111 1111211 1345 89999999987
Q sequence1 126 NDEHTRRELAKMKQEPVKPEEGRDMANRI----GAFGYMECSAKTKDGVR 171 (184)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~~i~ 171 (184)
.............. ....+.... ....++++|+.++.|+.
T Consensus 159 ~~~~~~~~~~~~~~------~l~~~l~~~~~~~~~~~~i~~Sa~~~~~i~ 202 (461)
T 6RA9_B 159 EPAYSEKRYDEIVK------EVSAYIKKIGYNPATVPFVPISGWHGDNML 202 (461)
T ss_dssp SSTTCHHHHHHHHH------HHHHHHHHHTCCTTSSCEEECCTTTCTTTS
T ss_pred CCccCHHHHHHHHH------HHHHHHHHcCCChhcCcEEeCccccccccC
Confidence 53211111111000 000011111 11567889999988886
##### No 387 #####
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>5OWV_D ATP-binding protein; dynamin, lipid remodelling, membrane tethering; 3.72A {Campylobacter jejuni}
Probab=99.21 E-value=1.1e-14 Score=115.44 Aligned_cols=160 Identities=18% Similarity=0.140 Sum_probs=91.0 Template_Neff=7.500
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-PTVFENYV---A---------------------------------- 47 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~-~t~~~~~~---~---------------------------------- 47 (184)
...++|+|+|..|+|||||++++.+....+... +++..... .
T Consensus 62 ~~~~~IaViG~~gAGKSTLIN~Llg~~~l~~~~~~~T~~~t~i~~g~~~~~~v~~~dg~~~~~~~e~l~~~~~~~~~~~~ 141 (614)
T 5OWV_D 62 DKNVNIAIIGQFSSGKSSLLNLILGRDCLPTGVVPVTFKPTFLRYAKEYFLRVEFEDGSDIITNIEKLAFYTDQRNEVKQ 141 (614)
T ss_dssp TSCCCEEEECCSSCSHHHHHHHHHSSCCC------CCCCCEEEEECSSCEEEEEETTSCEEEEEGGGHHHHHSCCSSSCC
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHhCCCCCCCCCcccccceeEEecCCceEEEEEEcCCCEEEeeHHHHHhhccccchhcc
Confidence 456899999999999999999998765533211 11100000 0
Q sequence1 48 ----DIEVD-GKQVELALWDTAGLEDYDR---LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG 119 (184)
Q Consensus 48 ----~~~~~-~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~ 119 (184)
.+... .....+.+||+||...... .+..++..++++++|++++...+.... ..+...+.. ...|+++|+
T Consensus 142 ~~~i~i~~p~~~l~~i~ivDTPG~~~~~~~~~~~~~~l~~ad~iI~Vvd~~~~~~~~e~-~~l~~ll~~--~~~~iIiVl 218 (614)
T 5OWV_D 142 AKSLHIFAPIPLLEKITLVDTPGLNANENDTLTTLDELKNIHGAIWLSLIDNAGKKSEE-DAIKANLEL--LGENSICVL 218 (614)
T ss_dssp EEEEEEEESCTTCSSCCEEECCCCCSCSTHHHHHHHHSCCCCEEEEEECSCCCHHHHHH-HHHHHTTTT--STTSEEEEE
T ss_pred ccEEEEEccchhcCCeEEEECCCCCCCCcccHHHHHHHHhcCeEEEEEEccCCCCccHH-HHHHHHHHH--HCCCEEEEE
Confidence 00000 0012688999999876544 566777889999999887765433322 233333322 257789999
Q sequence1 120 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD--------GVREVFEMATR 179 (184)
Q Consensus 120 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~--------~i~~~~~~~~~ 179 (184)
||.|.............. ...... ....++.+||+.+. |+.++++++.+
T Consensus 219 NK~D~~~~~e~~~v~~~i----------~~~l~~-~~~~ii~iSAk~~~~~~~~~~sgi~~L~~~L~~ 275 (614)
T 5OWV_D 219 NQKDKLSAEELDNVLNYA----------KSVFLK-YFNELIAISCKEAKDEQSYEKSNFQSLLDFLTQ 275 (614)
T ss_dssp CCGGGC---CHHHHHHHH----------HHHHHC-CSSSSCEEECCCCTTCSSCCSSCHHHHHHHHHH
T ss_pred EChhcCCHHHHHHHHHHH----------HHHHHH-hccceEEEecCccccchhhhhcCHHHHHHHHHH
Confidence 999997643211110000 000001 12456788888765 77777777765
##### No 388 #####
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>5OXF_C ATP-binding protein; dynamin, membrane remodelling, membrane fusion; HET: GDP; 3.94A {Campylobacter jejuni}
Probab=99.21 E-value=1.1e-14 Score=115.44 Aligned_cols=160 Identities=18% Similarity=0.140 Sum_probs=91.5 Template_Neff=7.500
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-PTVFENYV---A---------------------------------- 47 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~-~t~~~~~~---~---------------------------------- 47 (184)
...++|+|+|..|+|||||++++.+....+... +++..... .
T Consensus 62 ~~~~~IaViG~~gAGKSTLIN~Llg~~~l~~~~~~~T~~~t~i~~g~~~~~~v~~~dg~~~~~~~e~l~~~~~~~~~~~~ 141 (614)
T 5OXF_C 62 DKNVNIAIIGQFSSGKSSLLNLILGRDCLPTGVVPVTFKPTFLRYAKEYFLRVEFEDGSDIITNIEKLAFYTDQRNEVKQ 141 (614)
T ss_dssp TSCEEEEEECCSSCSHHHHHHHHHSSCCCC---CCCCCCCEEEEECSSCEEEEEETTSCEEEECGGGHHHHHSCCSSSCC
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHhCCCCCCCCCcccccceeEEecCCceEEEEEEcCCCEEEeeHHHHHhhccccchhcc
Confidence 456899999999999999999998765533211 11100000 0
Q sequence1 48 ----DIEVD-GKQVELALWDTAGLEDYDR---LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG 119 (184)
Q Consensus 48 ----~~~~~-~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~ 119 (184)
.+... .....+.+||+||...... .+..++..++++++|++++...+.... ..+...+.. ...|+++|+
T Consensus 142 ~~~i~i~~p~~~l~~i~ivDTPG~~~~~~~~~~~~~~l~~ad~iI~Vvd~~~~~~~~e~-~~l~~ll~~--~~~~iIiVl 218 (614)
T 5OXF_C 142 AKSLHIFAPIPLLEKITLVDTPGLNANENDTLTTLDELKNIHGAIWLSLIDNAGKKSEE-DAIKANLEL--LGENSICVL 218 (614)
T ss_dssp EEEEEEEECCTTSSSEEEEECCCCCSCTTHHHHHHHHSCCCCEEEEEECSCCCHHHHHH-HHHHHTTTS--SCSSCEEEE
T ss_pred ccEEEEEccchhcCCeEEEECCCCCCCCcccHHHHHHHHhcCeEEEEEEccCCCCccHH-HHHHHHHHH--HCCCEEEEE
Confidence 00000 0012688999999876544 566777889999999887765433322 233333322 257789999
Q sequence1 120 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD--------GVREVFEMATR 179 (184)
Q Consensus 120 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~--------~i~~~~~~~~~ 179 (184)
||.|.............. ...... ....++.+||+.+. |+.++++++.+
T Consensus 219 NK~D~~~~~e~~~v~~~i----------~~~l~~-~~~~ii~iSAk~~~~~~~~~~sgi~~L~~~L~~ 275 (614)
T 5OXF_C 219 NQKDKLSAEELDNVLNYA----------KSVFLK-YFNELIAISCKEAKDEQSYEKSNFQSLLDFLTQ 275 (614)
T ss_dssp CCGGGC---CHHHHHHHH----------HHHHHC-CSSCSCCEECCCCSSCSSCCSSCHHHHHHHHHH
T ss_pred EChhcCCHHHHHHHHHHH----------HHHHHH-hccceEEEecCccccchhhhhcCHHHHHHHHHH
Confidence 999997643211110000 000001 12456788888765 77777777765
##### No 389 #####
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>2XTO_A GTPASE IMAP FAMILY MEMBER 2; IMMUNE SYSTEM, G PROTEIN; HET: GDP; 2.8A {HOMO SAPIENS}
Probab=99.21 E-value=1.1e-14 Score=102.15 Aligned_cols=120 Identities=15% Similarity=0.175 Sum_probs=69.4 Template_Neff=11.800
Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYD--------RLRPLSY- 77 (184)
Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~- 77 (184)
.++|+++|.+|+|||||++++.+........+... ...............+.+||+||..... .+...+.
T Consensus 2 ~~~i~v~G~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~i~~~~~~ 81 (240)
T 2XTO_A 2 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLL 81 (240)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHTSCCSCCCCTTSCCCCSCEEEEEEETTEEEEEEECCGGGGCCSCCTTHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCChHHHHHHHhccccccccCCCCccceeeEEEEEEECCEEEEEEECCCCCCCccchHHHHHHHHHHHHh
Confidence 57899999999999999999987654322211111 1111111111234578899999976543 1222222
Q sequence1 78 --PDTDVILMCFSIDSPDSLE-NIPEKWTPEVKHFCPNVPIILVGNKKDLRND 127 (184)
Q Consensus 78 --~~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~ 127 (184)
..++++++|++.+...... .....+...+.......++++++||.|+...
T Consensus 82 ~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~~k~d~~~~ 134 (240)
T 2XTO_A 82 SAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 134 (240)
T ss_dssp HTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCTTGGGGEEEEEECGGGGSSC
T ss_pred cCCCceEEEEEEEcccCCHHHHHHHHHHHHHHCcccccCEEEEEEehhhcCCC
Confidence 3448999999987543222 2222222222222235788899999998764
##### No 390 #####
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>2WSM_A HYDROGENASE EXPRESSION/FORMATION PROTEIN (HYPB); METAL BINDING PROTEIN; 2.3A {ARCHAEOGLOBUS FULGIDUS}
Probab=99.19 E-value=1.4e-14 Score=100.95 Aligned_cols=156 Identities=17% Similarity=0.069 Sum_probs=91.1 Template_Neff=11.000
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT--------VFENY-----VADIEV------------------DG 53 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t--------~~~~~-----~~~~~~------------------~~ 53 (184)
.....+|+++|..|+|||||++++............ ..... ...... ..
T Consensus 27 ~~~~~~i~i~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (221)
T 2WSM_A 27 ESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKF 106 (221)
T ss_dssp HHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGG
T ss_pred hhCCEEEEEEcCCCCCHHHHHHHHHHHHcCCCeEEEEECCCCChHHHHHHHHcCCeEEEeccCCccccCHHHHHHHHHhh
Confidence 356689999999999999999999875321000000 00000 000000 00
Q sequence1 54 KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRE 133 (184)
Q Consensus 54 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~ 133 (184)
....+.+||++|...... ..+..+|++++|+|..+...+... +...+ ..+.++|+||.|+...... .
T Consensus 107 ~~~~~~iid~~g~~~~~~---~~~~~~d~~v~v~d~~~~~~~~~~---~~~~~-----~~~~ivv~nK~D~~~~~~~--~ 173 (221)
T 2WSM_A 107 SDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDVVEK---HPEIF-----RVADLIVINKVALAEAVGA--D 173 (221)
T ss_dssp TTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTHHHH---CHHHH-----HTCSEEEEECGGGHHHHTC--C
T ss_pred cCCCEEEEeCCCCccccc---chhcCCCeEEEEEECCCcchhHhh---CHHHH-----hhCCEEEEEChHhhchhch--h
Confidence 134678899999753322 234677899999999986544322 11111 2455899999999764210 0
Q sequence1 134 LAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
..... .. .........++++|++++.|+++++.++...+.
T Consensus 174 ~~~~~------~~---l~~~~~~~~~~~~s~~~~~~i~~l~~~~~~~~~ 213 (221)
T 2WSM_A 174 VEKMK------AD---AKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp HHHHH------HH---HHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred HHHHH------HH---HHHHCCCCEEEEeecccCCCHHHHHHHHHHHHH
Confidence 00000 00 000112257889999999999999999887764
##### No 391 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6BK7_B Adenosylhomocysteinase (E.C.3.3.1.1, 1.8.1.7); Structural Genomics, Center for Structural; 1.83A {Enterococcus faecalis (strain ATCC 700802 / V583)}
Probab=99.19 E-value=1.4e-14 Score=109.71 Aligned_cols=120 Identities=17% Similarity=0.044 Sum_probs=76.2 Template_Neff=10.800
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV--PTV---FE-----------NY-VADIEVDGKQVELALWDTAGL 66 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~--~t~---~~-----------~~-~~~~~~~~~~~~~~i~D~~g~ 66 (184)
......+|+++|..++|||||++++.......... ... .. .. ............+.+||+||+
T Consensus 9 ~~~~~~~i~i~G~~~~GKStLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 88 (407)
T 6BK7_B 9 SLEKTRNIGIMAHVDAGKTTTTERILYYTGKIHKIGETHEGASQMDWMEQEQERGITITSAATTAQWKGYRVNIIDTPGH 88 (407)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSCC------------------------CCCCSEEEEEETTEEEEEECCCSS
T ss_pred ChhhceEEEEEecCCCChhHHHHHHHHHhCCcccceeccCCcccccchHHHHHHCceeEeeeEEEEeCCEEEEEEeCCCC
Confidence 34567899999999999999999988553211100 000 00 00 000011112357899999999
Q sequence1 67 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 127 (184)
Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~ 127 (184)
..+...+..++..+|++++|+|+........ ...+.... ....|+++|+||+|+...
T Consensus 89 ~~~~~~~~~~~~~~d~~l~vvd~~~~~~~~~-~~~~~~~~---~~~~~~ivv~nK~D~~~~ 145 (407)
T 6BK7_B 89 VDFTIEVQRSLRVLDGAVTVLDSQSGVEPQT-ETVWRQAT---EYKVPRIVFCNKMDKIGA 145 (407)
T ss_dssp CCCSSHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHH---HTTCCEEEEEECTTSTTC
T ss_pred cChHHHHHHHHhhCCEEEEEEECCCCCChhH-HHHHHHHH---HhCCCEEEEEeCccCCCC
Confidence 8887777778889999999999987432221 12222222 125889999999999763
##### No 392 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>5FG3_A Probable translation initiation factor IF-2; Translation initiaton factor, GTPase, Ribosomal; HET: GDP; 1.9A {Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)}
Probab=99.19 E-value=1.6e-14 Score=115.19 Aligned_cols=118 Identities=21% Similarity=0.175 Sum_probs=74.8 Template_Neff=8.500
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN---YVAD--------------IEVDGKQVELALWDTAGLE 67 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~---~~~~--------------~~~~~~~~~~~i~D~~g~~ 67 (184)
..+.+.|+++|..++|||||+.+|................ .... .........+.+||+||++
T Consensus 13 ~~r~~~V~VlGhvdsGKTTLl~~L~~~~~~~~e~g~it~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iDTPGh~ 92 (623)
T 5FG3_A 13 RLRQPIVVVLGHVDHGKTTLLDKIRRTAVAAKEAGGITQHIGASIVPADVIEKIAEPLKKVIPVKLVIPGLLFIDTPGHE 92 (623)
T ss_dssp CBCCCEEEEECSTTSSHHHHHHHHHHHHHHHCCSSCCCBCSSEEEEEHHHHHHHTGGGTTTSCCCCCSCEEEEESSCSHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHhcccccccccCCccceeeEEEeeHHHHHHHhhHHhhccCcccccCCEEEEeCCCcH
Confidence 3556889999999999999999987654322111100000 0000 0001111357899999999
Q sequence1 68 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184)
.+...+......+|++++|+|+.+.... ...+. ...+.. ...|+++++||+|+..
T Consensus 93 ~f~~~~~~g~~~aD~aILVVda~~g~~~-qT~e~-i~~l~~--~~~P~IVviNKiD~~~ 147 (623)
T 5FG3_A 93 LFSNLRRRGGSVADFAILVVDIMEGFKP-QTYEA-LELLKE--RRVPFLIAANKIDRIP 147 (623)
T ss_dssp HHHHSEETTEESCSEEEEEEETTTCCCH-HHHHH-HHHHHH--TTCCEEEEEECGGGST
T ss_pred HHHHHHHHHhhcCCEEEEEEeCCCCCCH-HHHHH-HHHHHH--cCCCEEEEEEccccCC
Confidence 8888888788899999999999863211 11122 222222 2678999999999865
##### No 393 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1KJZ_A eIF2gamma; initiation of translation, TRANSLATION; 1.85A {Pyrococcus abyssi} SCOP: c.37.1.8, b.44.1.1, b.43.3.1
Probab=99.18 E-value=1.9e-14 Score=109.25 Aligned_cols=167 Identities=14% Similarity=0.062 Sum_probs=97.2 Template_Neff=10.700
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENY-VADIE---------------------VDGKQVEL 58 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~---~~t~~~~~-~~~~~---------------------~~~~~~~~ 58 (184)
......+|+++|..++|||||+++|......... ........ ..... .......+
T Consensus 6 ~~~~~~~i~iiG~~~sGKStL~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (410)
T 1KJZ_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSCCCEEEEESCTTSSHHHHHHHHHTCCCC-CTTTTSSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhCccccCCccccccCcEEEEeeecceeeeCCCCCCcccCCCCCCCCCCccceeeE
Confidence 3466789999999999999999999864321110 00000000 00000 00012457
Q sequence1 59 ALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMK 138 (184)
Q Consensus 59 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~ 138 (184)
.+||+||+..+...+......+|++++|+|..+........+.+ ..+... ...|+++++||+|+..............
T Consensus 86 ~liD~pG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~~~~~~l-~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~i~ 163 (410)
T 1KJZ_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MALQII-GQKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSSSCCHHHHHHH-HHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHHHHh-CCCeEEEEEeCcccCCHHHHHHHHHHHH
Confidence 89999999887766666778899999999987642223332222 222221 2478899999999876322111111100
Q sequence1 139 QEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRA 180 (184)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184)
. ..... ....+.++.+|+.++.++.++++++...
T Consensus 164 ~------~~~~~--~~~~~~~i~~S~~~g~~i~~l~~~l~~~ 197 (410)
T 1KJZ_A 164 E------FIEGT--VAENAPIIPISALHGANIDVLVKAIEDF 197 (410)
T ss_dssp H------HHTTS--TTTTCCEEEEBTTTTBTHHHHHHHHHHH
T ss_pred H------HHhcc--CcccCCEEECCcCCCCCHHHHHHHHHHh
Confidence 0 00000 0112567889999999999988877654
##### No 394 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1KK1_A eIF2gamma, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER; initiation of translation, TRANSLATION; HET: GNP; 1.8A {Pyrococcus abyssi} SCOP: b.44.1.1, c.37.1.8, b.43.3.1
Probab=99.18 E-value=1.9e-14 Score=109.25 Aligned_cols=167 Identities=14% Similarity=0.062 Sum_probs=97.1 Template_Neff=10.700
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENY-VADIE---------------------VDGKQVEL 58 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~---~~t~~~~~-~~~~~---------------------~~~~~~~~ 58 (184)
......+|+++|..++|||||+++|......... ........ ..... .......+
T Consensus 6 ~~~~~~~i~iiG~~~sGKStL~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (410)
T 1KK1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhCccccCCccccccCcEEEEeeecceeeeCCCCCCcccCCCCCCCCCCccceeeE
Confidence 3466789999999999999999999864321110 00000000 00000 00012457
Q sequence1 59 ALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMK 138 (184)
Q Consensus 59 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~ 138 (184)
.+||+||+..+...+......+|++++|+|..+........+.+ ..+... ...|+++++||+|+..............
T Consensus 86 ~liD~pG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~~~~~~l-~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~i~ 163 (410)
T 1KK1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MALQII-GQKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHHHHh-CCCeEEEEEeCcccCCHHHHHHHHHHHH
Confidence 89999999887766666778899999999987642223332222 222221 2478899999999876322111111100
Q sequence1 139 QEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRA 180 (184)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184)
. ..... ....+.++.+|+.++.++.++++++...
T Consensus 164 ~------~~~~~--~~~~~~~i~~S~~~g~~i~~l~~~l~~~ 197 (410)
T 1KK1_A 164 E------FIEGT--VAENAPIIPISALHGANIDVLVKAIEDF 197 (410)
T ss_dssp H------HHTTS--TTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred H------HHhcc--CcccCCEEECCcCCCCCHHHHHHHHHHh
Confidence 0 00000 0112567889999999999988877654
##### No 395 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4AC9_A MJ0495-LIKE PROTEIN; SELENOCYSTEINE, TRANSLATION, SECIS ELEMENT, EF-SEC; HET: 5GP, GDP, SO4, CMH, DXC; 3.03A {METHANOCOCCUS MARIPALUDIS}
Probab=99.18 E-value=1.9e-14 Score=111.58 Aligned_cols=165 Identities=21% Similarity=0.150 Sum_probs=94.9 Template_Neff=10.100
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQ-------FPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLS 76 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 76 (184)
......+|+++|..++|||||+++|.... ............ ............+.+||+||+.++...+...
T Consensus 15 ~~~~~~~v~vlG~~~sGKStL~~~L~~~~~~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~liD~pG~~~~~~~~~~~ 93 (482)
T 4AC9_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITID-IGFSAFKLENYRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCCEEEEEEEEESTTSSHHHHHHHHHTC----------------------CCCEEEETTEEEEEECCSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHhHhccccccccCcHHhhcCeEEE-EEEEEEEeCCeEEEEEeCCCcHHHHHHHHHH
Confidence 34568899999999999999999986521 111111100000 0011111223578899999998887777777
Q sequence1 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
...+|++++|+|+++....+.. +. ...... ...|+++++||+|+....... ....... ....... ....
T Consensus 94 ~~~~D~~ilvvd~~~~~~~~~~-e~-l~~~~~--~~~~iivv~nK~D~~~~~~~~-~~~~~~~-----~~l~~~~-~~~~ 162 (482)
T 4AC9_A 94 ADIIDLALIVVDAKEGPKTQTG-EH-MLILDH--FNIPIIVVITKSDNAGTEEIK-RTEMIMK-----SILQSTH-NLKN 162 (482)
T ss_dssp TTTCCEEEEEEETTTBCCHHHH-HH-HHHHHH--TTCCEEEEEECGGGSCHHHHH-HHHHHHH-----HHHTTSS-TTSS
T ss_pred HhhCCEEEEEEeCCCCCChhHH-HH-HHHHHH--cCCCEEEEEecCCCCChHHHH-HHHHHHH-----HHHHHhc-CccC
Confidence 7889999999998764322211 11 111221 246789999999987643211 1110000 0000000 1112
Q sequence1 157 FGYMECSAKTKDGVREVFEMATRA 180 (184)
Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184)
..++++|+.++.|+.++++++...
T Consensus 163 ~~~i~iSa~~g~~i~~l~~~L~~~ 186 (482)
T 4AC9_A 163 SSIIPISAKTGFGVDELKNLIITT 186 (482)
T ss_dssp CCEEECBTTTTBTHHHHHHHHHHH
T ss_pred CeEEEeecCCCCChHHHHHHHHHH
Confidence 567889999999998887766543
##### No 396 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4AC9_C MJ0495-LIKE PROTEIN; SELENOCYSTEINE, TRANSLATION, SECIS ELEMENT, EF-SEC; HET: 5GP, GDP, SO4, CMH, DXC; 3.03A {METHANOCOCCUS MARIPALUDIS}
Probab=99.18 E-value=1.9e-14 Score=111.58 Aligned_cols=165 Identities=21% Similarity=0.150 Sum_probs=96.4 Template_Neff=10.100
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQ-------FPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLS 76 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 76 (184)
......+|+++|..++|||||+++|.... ............ ............+.+||+||+.++...+...
T Consensus 15 ~~~~~~~v~vlG~~~sGKStL~~~L~~~~~~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~liD~pG~~~~~~~~~~~ 93 (482)
T 4AC9_C 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITID-IGFSAFKLENYRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHGGGGTCCSSCCCCCCCCCCCCC-SSCCEEEETTEEEEEECCSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHhHhccccccccCcHHhhcCeEEE-EEEEEEEeCCeEEEEEeCCCcHHHHHHHHHH
Confidence 34568899999999999999999986521 111111100000 0011111223578899999998887777777
Q sequence1 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
...+|++++|+|+++....+.. +. ...... ...|+++++||+|+....... ....... ....... ....
T Consensus 94 ~~~~D~~ilvvd~~~~~~~~~~-e~-l~~~~~--~~~~iivv~nK~D~~~~~~~~-~~~~~~~-----~~l~~~~-~~~~ 162 (482)
T 4AC9_C 94 ADIIDLALIVVDAKEGPKTQTG-EH-MLILDH--FNIPIIVVITKSDNAGTEEIK-RTEMIMK-----SILQSTH-NLKN 162 (482)
T ss_dssp TTTEEEEEEEEETTTBCCHHHH-HH-HHHHHH--TTCCEEEEEECGGGSCHHHHH-HHHHHHH-----HHHTTSS-SGGG
T ss_pred HhhCCEEEEEEeCCCCCChhHH-HH-HHHHHH--cCCCEEEEEecCCCCChHHHH-HHHHHHH-----HHHHHhc-CccC
Confidence 7889999999998764322211 11 111221 246789999999987643211 1110000 0000000 1112
Q sequence1 157 FGYMECSAKTKDGVREVFEMATRA 180 (184)
Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184)
..++++|+.++.|+.++++++...
T Consensus 163 ~~~i~iSa~~g~~i~~l~~~L~~~ 186 (482)
T 4AC9_C 163 SSIIPISAKTGFGVDELKNLIITT 186 (482)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHH
T ss_pred CeEEEeecCCCCChHHHHHHHHHH
Confidence 567889999999998887766543
##### No 397 #####
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>4ACA_B TRANSLATION ELONGATION FACTOR SELB; SELENOCYSTEINE, TRANSLATION, SECIS ELEMENT, EF-SEC; HET: 5GP, CMH, SO4, DXC; 3.15A {METHANOCOCCUS MARIPALUDIS}
Probab=99.18 E-value=1.9e-14 Score=111.58 Aligned_cols=165 Identities=21% Similarity=0.150 Sum_probs=95.8 Template_Neff=10.100
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQ-------FPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLS 76 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 76 (184)
......+|+++|..++|||||+++|.... ............ ............+.+||+||+.++...+...
T Consensus 15 ~~~~~~~v~vlG~~~sGKStL~~~L~~~~~~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~liD~pG~~~~~~~~~~~ 93 (482)
T 4ACA_B 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITID-IGFSAFKLENYRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHHHC------------CCCCCCC-SSCCEEEETTEEEEEECCSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHhHhccccccccCcHHhhcCeEEE-EEEEEEEeCCeEEEEEeCCCcHHHHHHHHHH
Confidence 34568899999999999999999986521 111111100000 0011111223578899999998887777777
Q sequence1 77 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156 (184)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
...+|++++|+|+++....+.. +. ...... ...|+++++||+|+....... ....... ....... ....
T Consensus 94 ~~~~D~~ilvvd~~~~~~~~~~-e~-l~~~~~--~~~~iivv~nK~D~~~~~~~~-~~~~~~~-----~~l~~~~-~~~~ 162 (482)
T 4ACA_B 94 ADIIDLALIVVDAKEGPKTQTG-EH-MLILDH--FNIPIIVVITKSDNAGTEEIK-RTEMIMK-----SILQSTH-NLKN 162 (482)
T ss_dssp TTTCCEEEEEEETTTCCCHHHH-HH-HHHHHH--TTCCEEEEEECGGGSCHHHHH-HHHHHHH-----HHHTTSS-SCTT
T ss_pred HhhCCEEEEEEeCCCCCChhHH-HH-HHHHHH--cCCCEEEEEecCCCCChHHHH-HHHHHHH-----HHHHHhc-CccC
Confidence 7889999999998764322211 11 111221 246789999999987643211 1110000 0000000 1112
Q sequence1 157 FGYMECSAKTKDGVREVFEMATRA 180 (184)
Q Consensus 157 ~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184)
..++++|+.++.|+.++++++...
T Consensus 163 ~~~i~iSa~~g~~i~~l~~~L~~~ 186 (482)
T 4ACA_B 163 SSIIPISAKTGFGVDELKNLIITT 186 (482)
T ss_dssp CCEEECBTTTTBTHHHHHHHHHHH
T ss_pred CeEEEeecCCCCChHHHHHHHHHH
Confidence 567889999999998887766543
##### No 398 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6YXY_EQ bL28m, uL29m, uL30m, bL32m, bL35m; mitoribosome, assembly, LSU, RIBOSOME; HET: ATP, PM8, MG, SPD, NAD, GTP; 3.1A {Trypanosoma brucei brucei}
Probab=99.18 E-value=1.9e-14 Score=114.00 Aligned_cols=161 Identities=11% Similarity=0.048 Sum_probs=91.6 Template_Neff=6.500
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD--------------- 70 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------------- 70 (184)
...++|+++|..++|||||+++++.........+......... .......+.+||+||...+.
T Consensus 74 ~~~p~IvVIG~~gsGKSSLIn~Ll~~~~~~~~~~~~gtT~~i~--~~~~~~~l~LVDTPG~~~~~~~~l~~~~~e~e~~~ 151 (655)
T 6YXY_EQ 74 HSFPEVCFIGKPNVGKSSIISCLLRNPRLGRAGRVRGTTRLLQ--FFNVGDALLLVDTPGYGGWKGRHLPQSVAERASAF 151 (655)
T ss_dssp TCCCEEEEEESSSSSHHHHHHHHTTCTTTSCCCSSSCSCCSEE--EEEETTTEEEEECCCSSCCCSCCCSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcccCCCCCCCCceEEEE--EEEcCCcEEEEeCCCCCCccccCCcccHHHHHHHH
Confidence 4567899999999999999999986643211111100110000 00113367899999965332
Q sequence1 71 RLRPLSY-----PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPE 145 (184)
Q Consensus 71 ~~~~~~~-----~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (184)
..+..++ ..+|++++|+|.+.... .....+...+.. ...|+++|+||+|+...... ...... .
T Consensus 152 ~ll~~yl~~r~~~~aD~VILVVDas~~~~--~qd~ell~~L~~--~~iPiIVViNK~Dl~~~~~e--~~~~~i------~ 219 (655)
T 6YXY_EQ 152 AILFRYLALRSKGPLKRVYWVMEATKPVQ--PRDEEIFVFLRN--EQIPFSIIISKLDYFGGDGA--ALRRQV------E 219 (655)
T ss_dssp HHHHHHHHHGGGTTEEEEEEEECSSCCCC--HHHHHHHHHHHH--HTCCEEEEECCGGGTSSCHH--HHHHHH------H
T ss_pred HHHHHHHHHccCCCCcEEEEEeeCCCCCC--hHHHHHHHHHHh--CCCCeEEEEeceecCCCChh--HHHHHH------H
Confidence 1122233 27899999999986432 221223333322 24789999999999764210 000000 0
Q sequence1 146 EGRDMANRIGAFGYMECSAKTK-----DGVREVFEMATRAA 181 (184)
Q Consensus 146 ~~~~~~~~~~~~~~~~~s~~~~-----~~i~~~~~~~~~~~ 181 (184)
........ ....++.+|++++ .|+.+++.++.+.+
T Consensus 220 ei~~~L~~-~~v~ii~VSAktg~~~~~~GI~eL~~~I~~~l 259 (655)
T 6YXY_EQ 220 SIYNFLGT-EDVPVLGVRADSSRPERCINMTALQHDITHYC 259 (655)
T ss_dssp HHHHHHCC-SSSCEEECBCCSSCGGGCBSCHHHHHHHHHHH
T ss_pred HHHHHhcc-CCCCEEEEecCCCCcchhcCHHHHHHHHHHHc
Confidence 00111111 2367889999999 88888887776543
##### No 399 #####
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>1SKQ_B Elongation factor 1-alpha; Elongation factors, archaea, protein synthesis; HET: GDP; 1.8A {Sulfolobus solfataricus} SCOP: b.43.3.1, c.37.1.8, b.44.1.1
Probab=99.17 E-value=2e-14 Score=109.89 Aligned_cols=161 Identities=13% Similarity=0.122 Sum_probs=88.8 Template_Neff=10.600
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT-----------------------------VFE-NYVADIEVDG 53 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t-----------------------------~~~-~~~~~~~~~~ 53 (184)
...+.++|+++|..++|||||+++|............ ... ..........
T Consensus 2 ~~~~~~~i~v~G~~~sGKStLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 81 (435)
T 1SKQ_B 2 SQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET 81 (435)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHBCCCSSHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-----------CEEEC
T ss_pred CCCCcEEEEEEeCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCcHHHHHHHhcCHHHHhcCceeeeeEEEEEe
Confidence 4567789999999999999999998754211000000 000 0000001112
Q sequence1 54 KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDS-----LENIPEKWTPEVKHFCPNVP-IILVGNKKDLRND 127 (184)
Q Consensus 54 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s-----~~~~~~~~~~~~~~~~~~~~-~~vv~nK~D~~~~ 127 (184)
....+.+||+||+..+...+..+...+|++++|+|++.... +......+...... ...| +++++||+|+...
T Consensus 82 ~~~~~~liD~pG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~ivv~nK~D~~~~ 159 (435)
T 1SKQ_B 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT--MGLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp SSCEEEEEECTTSTTHHHHHHHSSSCCSEEEEEEECSTTHHHHHSSSSCHHHHHHHHHHH--TTCCCEEEEEECGGGSSS
T ss_pred CCeEEEEEeCCCchhhHHHHHHHHccCCEEEEEEECCCCccccCcCCCCchHHHHHHHHH--cCCCEEEEEEECccCCCC
Confidence 23467899999998887777777788999999999886532 11111112222221 1344 9999999998753
Q sequence1 128 EHTRRELAKMKQEPVKPEEGRDMANRI----GAFGYMECSAKTKDGVRE 172 (184)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~~i~~ 172 (184)
........... .....+.... ....++++|+.++.|+.+
T Consensus 160 ~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~i~iSa~~g~~i~~ 202 (435)
T 1SKQ_B 160 PYDEKRYKEIV------DQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp TTCHHHHHHHH------HHHHHHHHHTTCCCTTEEEEECBTTTTBTTTB
T ss_pred CCCHHHHHHHH------HHHHHHHHHcCCCccccEEEEeeccccccCCC
Confidence 21111111100 0011111111 125678899999988854
##### No 400 #####
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>6N0B_C Septin-12; cytoskeleton component septin GTPase, STRUCTURAL; HET: GDP; 1.739A {Homo sapiens}
Probab=99.16 E-value=2.5e-14 Score=103.48 Aligned_cols=163 Identities=15% Similarity=0.107 Sum_probs=77.2 Template_Neff=10.800
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-------FENYVA--DIEVDGKQVELALWDTAGLEDY----- 69 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~-------~~~~~~--~~~~~~~~~~~~i~D~~g~~~~----- 69 (184)
......+|+++|..|+|||||++++.+........+.. ...... ....++..+.+.+||++|....
T Consensus 13 ~~~~~~~i~vvG~~g~GKSsli~~l~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 92 (285)
T 6N0B_C 13 DPGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 92 (285)
T ss_dssp ---CEEEEEEECCTTSSHHHHHTTSSSSCSSBTTBCCGGGSCCSSCCCEEEEEEEECSSCEEEEEEEECTTTTCSSBCTT
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHhCCccCCCCCCCCCccccceeEEEEEEEEEeeCCEEEEEEEEECCCCCcCCCCcc
Confidence 34567899999999999999999988765432211110 000001 1112223357899999994321
Q sequence1 70 ---------DRLRPLS-------------YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 127 (184)
Q Consensus 70 ---------~~~~~~~-------------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~ 127 (184)
...+..+ ...+++++++++..... +......+...+ ....|+++|+||.|....
T Consensus 93 ~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~v~~v~~~~~~-~~~~~~~~~~~l---~~~~~vi~v~~k~D~~~~ 168 (285)
T 6N0B_C 93 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRL---HEKVNIIPLIAKADTLTP 168 (285)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHSSSCCSCCCCCCCEEEEEECCCSSC-CCHHHHHHHHHH---TTTSCEEEEESSGGGSCH
T ss_pred chHHHHHHHHHHHHHHHHHhhccccccCCCCceeEEEEEeCCCCCC-CCHHHHHHHHHH---hhcCCeEEEEeccccCCH
Confidence 0001111 12367778887775322 222111222222 235789999999999754
Q sequence1 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
......... ........ ...++.+|+..+.++.+++.++.+.+
T Consensus 169 ~~~~~~~~~----------~~~~~~~~-~~~~~~~s~~~~~~~~~l~~~l~~~~ 211 (285)
T 6N0B_C 169 EECQQFKKQ----------IMKEIQEH-KIKIYEFPETDDEEENKLVKKIKDRL 211 (285)
T ss_dssp HHHHHHHHH----------HHHHHHHT-TCCCCCCC-----------CTTTTSC
T ss_pred HHHHHHHHH----------HHHHHHHC-CCceecCCCCCchHHHHHHHHHHhcC
Confidence 321110000 00011111 14677888888888888777665543
##### No 401 #####
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>6UQQ_A Septin-2, Septin-8; cytoskeleton protein, septin, STRUCTURAL PROTEIN; HET: GDP; 2.75A {Homo sapiens}
Probab=99.16 E-value=2.5e-14 Score=103.48 Aligned_cols=163 Identities=15% Similarity=0.107 Sum_probs=83.8 Template_Neff=10.800
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-------FENYVA--DIEVDGKQVELALWDTAGLEDY----- 69 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~-------~~~~~~--~~~~~~~~~~~~i~D~~g~~~~----- 69 (184)
......+|+++|..|+|||||++++.+........+.. ...... ....++..+.+.+||++|....
T Consensus 13 ~~~~~~~i~vvG~~g~GKSsli~~l~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 92 (285)
T 6UQQ_A 13 DPGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 92 (285)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHTTSCSSCSSSCCGGGSCCSSCCCEEEEEEEEETTEEEEEEEEECTTTTCSSCCTT
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHhCCccCCCCCCCCCccccceeEEEEEEEEEeeCCEEEEEEEEECCCCCcCCCCcc
Confidence 34567899999999999999999988765432211110 000001 1112223357899999994321
Q sequence1 70 ---------DRLRPLS-------------YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 127 (184)
Q Consensus 70 ---------~~~~~~~-------------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~ 127 (184)
...+..+ ...+++++++++..... +......+...+ ....|+++|+||.|....
T Consensus 93 ~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~v~~v~~~~~~-~~~~~~~~~~~l---~~~~~vi~v~~k~D~~~~ 168 (285)
T 6UQQ_A 93 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRL---HEKVNIIPLIAKADTLTP 168 (285)
T ss_dssp TTHHHHHHHHHHHHHHHHHHSCSSCCSCCCCCCCEEEEEECCCSSC-CCHHHHHHHHHH---TTTSCEEEEESCGGGSCH
T ss_pred chHHHHHHHHHHHHHHHHHhhccccccCCCCceeEEEEEeCCCCCC-CCHHHHHHHHHH---hhcCCeEEEEeccccCCH
Confidence 0001111 12367778887775322 222111222222 235789999999999754
Q sequence1 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
......... ........ ...++.+|+..+.++.+++.++.+.+
T Consensus 169 ~~~~~~~~~----------~~~~~~~~-~~~~~~~s~~~~~~~~~l~~~l~~~~ 211 (285)
T 6UQQ_A 169 EECQQFKKQ----------IMKEIQEH-KIKIYEFPETDDEEENKLVKKIKDRL 211 (285)
T ss_dssp HHHHHHHHH----------HHHHHHHT-TCCCCCCC---CTTHHHHHHHHHTTC
T ss_pred HHHHHHHHH----------HHHHHHHC-CCceecCCCCCchHHHHHHHHHHhcC
Confidence 321110000 00011111 14677888888888888777665543
##### No 402 #####
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>5CK4_A Putative signal recognition particle protein; Arf-like GTPase, protein translocation, signaling; HET: GDP; 1.89A {Chaetomium thermophilum}
Probab=99.16 E-value=2.6e-14 Score=105.13 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=23.0 Template_Neff=10.100
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSK 30 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~ 30 (184)
..+..+|+++|+.|+|||||+++|..
T Consensus 16 ~~~~~~v~ivG~~gsGKSTll~~L~~ 41 (316)
T 5CK4_A 16 YTTLPSVLLIGPSGAGKTALLTLFER 41 (316)
T ss_dssp -CCSCEEEEECCTTSSHHHHHHHHHC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45678999999999999999999985
##### No 403 #####
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>5EE0_A Small ubiquitin-related modifier,Obg-like ATPase 1; OSYCHF1, GTP-BINDING PROTEIN, AMP-PNP, YCHF-TYPE; 2.2A {Oryza sativa subsp. japonica}
Probab=99.16 E-value=2.7e-14 Score=108.12 Aligned_cols=124 Identities=19% Similarity=0.126 Sum_probs=75.4 Template_Neff=9.800
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGK---------------QVELALWDTAGLE- 67 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~- 67 (184)
.....+|+++|.+++|||||+++|+....... ..+++...........+. ...+.+||+||..
T Consensus 22 ~~~~~~I~vvG~~~sGKStLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~D~pG~~~ 101 (395)
T 5EE0_A 22 FSSHLKIGIVGLPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYVPDERFDWLCQLYKPKSEVSAYLEINDIAGLVR 101 (395)
T ss_dssp SCSCCCEEEECCTTSSHHHHHHHHHHTBCCGGGCTTSCCCTTEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCCC--
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhcCCCCchhCCCCCCCCceEEEEechHHHHHHHHHhCCCccccceEEEEEcCCccC
Confidence 45678999999999999999999986644311 111111111111111111 3468999999973
Q sequence1 68 ------DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT-----PEVKHFCPNVPIILVGNKKDLRNDE 128 (184)
Q Consensus 68 ------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~-----~~~~~~~~~~~~~vv~nK~D~~~~~ 128 (184)
.+...+..++..+|++++|+++....++......+. ..+.......|+++|+||+|.....
T Consensus 102 ~~~~~~~~~~~~~~~l~~ad~ii~Vvd~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iivV~nK~D~~~~~ 173 (395)
T 5EE0_A 102 GAHAGEGLGNAFLSHIRAVDGIFHVLRAFEDKEVTHIDDSVDPVRDLETIGEELRLKDIEFVQNKIDDLEKS 173 (395)
T ss_dssp ------CCSHHHHHHHTTCSCEEEEEECCCCSSCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCChHHHHHHHHhhCCEEEEEEeccCCCCCccCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 233445556778999999999887543333221111 1111112368899999999998653
##### No 404 #####
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>2YWE_A GTP-binding protein lepA; G domain, Beta-barrel, Ferredoxin-like domain; 2.05A {Aquifex aeolicus}
Probab=99.16 E-value=2.9e-14 Score=113.33 Aligned_cols=160 Identities=19% Similarity=0.154 Sum_probs=93.4 Template_Neff=8.900
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---------------V-PTVFENYVADIEV---DGKQVELALWDTAG 65 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~---------------~-~t~~~~~~~~~~~---~~~~~~~~i~D~~g 65 (184)
..+..+++++|..++|||||+.+|......... . ..+.......+.. .+....+.+||+||
T Consensus 3 ~~~~rni~IiG~~~~GKSTL~~~Ll~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~~~~~~liDtPG 82 (600)
T 2YWE_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred cccceEEEEEcCCCCCHHHHHHHHHHHhCCCChHHHHhHHhhcchhHHhcCceeeeeEEEEEEECCCCCEEEEEEEeCCC
Confidence 456678999999999999999998754221000 0 0000000000011 11346789999999
Q sequence1 66 LEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPE 145 (184)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (184)
+..+...+...+..+|++++|+|+......+.. ..+...+ ....|+++++||+|+...... . .... . .
T Consensus 83 h~df~~~~~~~l~~~D~aILvVDa~~g~~~qt~-~~l~~~~---~~~lpiivviNK~D~~~~~~~-~-~~~~----i--~ 150 (600)
T 2YWE_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAV---EQDLVIIPVINKIDLPSADVD-R-VKKQ----I--E 150 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHH---HTTCEEEEEEECTTSTTCCHH-H-HHHH----H--H
T ss_pred CcccHHHHHHHHHhCCEEEEEEECCCCCcHHHH-HHHHHHH---HCCCcEEEEEecCCCCCCCHH-H-HHHH----H--H
Confidence 998887777778889999999999875433322 2222222 125789999999998653210 0 0000 0 0
Q sequence1 146 EGRDMANRIGAFGYMECSAKTKDGVREVFEMATRA 180 (184)
Q Consensus 146 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184)
.... .....++.+|++++.|+.++++.+...
T Consensus 151 ~~l~----~~~~~~i~~Sa~~g~gi~~ll~~i~~~ 181 (600)
T 2YWE_A 151 EVLG----LDPEEAILASAKEGIGIEEILEAIVNR 181 (600)
T ss_dssp HTSC----CCGGGCEECBTTTTBSHHHHHHHHHHH
T ss_pred HHhC----CCHHHhHHHhhhcCCCHHHHHHHHHHh
Confidence 0000 011236778999999998888776543
##### No 405 #####
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>2YWF_A GTP-binding protein lepA; G domain, Beta-barrel, Ferredoxin-like domain; HET: GNP; 2.24A {Aquifex aeolicus}
Probab=99.16 E-value=2.9e-14 Score=113.33 Aligned_cols=160 Identities=19% Similarity=0.154 Sum_probs=95.7 Template_Neff=8.900
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---------------V-PTVFENYVADIEV---DGKQVELALWDTAG 65 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~---------------~-~t~~~~~~~~~~~---~~~~~~~~i~D~~g 65 (184)
..+..+++++|..++|||||+.+|......... . ..+.......+.. .+....+.+||+||
T Consensus 3 ~~~~rni~IiG~~~~GKSTL~~~Ll~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~~~~~~liDtPG 82 (600)
T 2YWF_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGGEEEEEEEECTTSSHHHHHHHHHHHHTCC-------------------CCCCCSCSEEEEEECTTSCEEEEEEECCCC
T ss_pred cccceEEEEEcCCCCCHHHHHHHHHHHhCCCChHHHHhHHhhcchhHHhcCceeeeeEEEEEEECCCCCEEEEEEEeCCC
Confidence 456678999999999999999998754221000 0 0000000000011 11346789999999
Q sequence1 66 LEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPE 145 (184)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (184)
+..+...+...+..+|++++|+|+......+.. ..+...+ ....|+++++||+|+...... . .... . .
T Consensus 83 h~df~~~~~~~l~~~D~aILvVDa~~g~~~qt~-~~l~~~~---~~~lpiivviNK~D~~~~~~~-~-~~~~----i--~ 150 (600)
T 2YWF_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAV---EQDLVIIPVINKIDLPSADVD-R-VKKQ----I--E 150 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTCSCHHHH-HHHHHHH---HTTCEEEEEEECTTSTTCCHH-H-HHHH----C--C
T ss_pred CcccHHHHHHHHHhCCEEEEEEECCCCCcHHHH-HHHHHHH---HCCCcEEEEEecCCCCCCCHH-H-HHHH----H--H
Confidence 998887777778889999999999875433322 2222222 125789999999998653210 0 0000 0 0
Q sequence1 146 EGRDMANRIGAFGYMECSAKTKDGVREVFEMATRA 180 (184)
Q Consensus 146 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184)
.... .....++.+|++++.|+.++++.+...
T Consensus 151 ~~l~----~~~~~~i~~Sa~~g~gi~~ll~~i~~~ 181 (600)
T 2YWF_A 151 EVLG----LDPEEAILASAKEGIGIEEILEAIVNR 181 (600)
T ss_dssp CCCC----CCGGGCEECBTTTTBSHHHHHHHHHHH
T ss_pred HHhC----CCHHHhHHHhhhcCCCHHHHHHHHHHh
Confidence 0000 011236778999999998888776543
##### No 406 #####
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>4D61_i 40S RIBOSOMAL PROTEIN SA, 40S; CRPV IRES, RIBOSOME, TERMINATION, RELEASE; 9.0A {ORYCTOLAGUS CUNICULUS}
Probab=99.15 E-value=3e-14 Score=108.72 Aligned_cols=160 Identities=14% Similarity=0.105 Sum_probs=88.6 Template_Neff=10.500
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEV--Y----------------------VPTV-----FEN-YVADIEVDGKQV 56 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~--~----------------------~~t~-----~~~-~~~~~~~~~~~~ 56 (184)
+..+|+++|..++|||||+++|........ . .... ... ............
T Consensus 2 ~~~~i~v~G~~~sGKSTli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 81 (426)
T 4D61_i 2 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 81 (426)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHTSSCCHHHHHHTSSCCCCCEEEEECSSC
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCChhHHHHhcCCHHHHHcCceeEEEEEEEEcCCc
Confidence 467999999999999999998874211000 0 0000 000 000001111234
Q sequence1 57 ELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDS---L---ENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEH 129 (184)
Q Consensus 57 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-~~vv~nK~D~~~~~~ 129 (184)
.+.+||+||+..+...+..+...+|++++|+|+.+... + ....+ +...... ...| +++++||+|+.....
T Consensus 82 ~i~liDtpG~~~~~~~~~~~~~~~d~~i~vvd~~~~~~e~~~~~~~~~~~-~l~~~~~--~~~~~iivvinK~D~~~~~~ 158 (426)
T 4D61_i 82 HFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE-HAMLAKT--AGVKHLIVLINKMDDPTVNW 158 (426)
T ss_dssp EEEEEEECCCSSSHHHHHHHCCCCCEEEEEEECSHHHHHHHHHCCCSHHH-HHHHHHH--TTCCEEEEEEECCCTTTTTC
T ss_pred EEEEEeCCCChHHHHHHHHHHhcCCEEEEEEECCCCcccCCCCCCcchHH-HHHHHHH--hCCCEEEEEEECCCccCCCC
Confidence 67899999998887777777788999999999876421 0 11111 1111111 2456 899999999864221
Q sequence1 130 TRRELAKMKQEPVKPEEGRDMANRI-----GAFGYMECSAKTKDGVREVFE 175 (184)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~~~~~ 175 (184)
.......... ......... ....++++|+.++.|+.++..
T Consensus 159 ~~~~~~~~~~------~l~~~l~~~~~~~~~~~~~i~~Sa~~g~~i~~~~~ 203 (426)
T 4D61_i 159 SNERYEECKE------KLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 203 (426)
T ss_dssp CSSHHHHHHH------TTTHHHHHSCHHHHHTCCCEECBTTTTBTSSSCCT
T ss_pred CHHHHHHHHH------HHHHHHHHcCCCchhcccEEECccCCccCcccccc
Confidence 1111111000 000111111 124688999999999887643
##### No 407 #####
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>5EE3_B Small ubiquitin-related modifier,Obg-like ATPase 1; osychf1, GTP-BINDING PROTEIN, ATP, AMP-PNP; HET: ANP, EPE; 2.9A {Oryza sativa subsp. japonica}
Probab=99.15 E-value=3e-14 Score=107.88 Aligned_cols=124 Identities=19% Similarity=0.126 Sum_probs=73.7 Template_Neff=9.800
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-YVPTVFENYVADIEVDGK---------------QVELALWDTAGLE- 67 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~- 67 (184)
.....+|+++|.+++|||||+++|........ ..+++............. ...+.+||+||..
T Consensus 22 ~~~~~~I~vvG~~~sGKStLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~D~pG~~~ 101 (395)
T 5EE3_B 22 FSSHLKIGIVGLPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYVPDERFDWLCQLYKPKSEVSAYLEINDIAGLVR 101 (395)
T ss_dssp SCSCCEEEEECCTTSSHHHHHHHHHHTCCCGGGCTTCCCCTTEEEEECCCHHHHHHHHHHCCSEEECCEEEEEESHHHHC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhcCCCCchhCCCCCCCCceEEEEeccHHHHHHHHHhCCCcceecEEEEEEcCCccC
Confidence 45678999999999999999999986643211 111111111111111111 3468999999973
Q sequence1 68 ------DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT-----PEVKHFCPNVPIILVGNKKDLRNDE 128 (184)
Q Consensus 68 ------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~-----~~~~~~~~~~~~~vv~nK~D~~~~~ 128 (184)
.+...+..++..+|++++|+++....++......+. ..+.......|+++|+||+|.....
T Consensus 102 ~~~~~~~~~~~~~~~l~~aD~ii~Vvd~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iivV~nK~D~~~~~ 173 (395)
T 5EE3_B 102 GAHAGEGLGNAFLSHIRAVDGIFHVLRAFEDKEVTHIDDSVDPVRDLETIGEELRLKDIEFVQNKIDDLEKS 173 (395)
T ss_dssp C----CSSCHHHHHHHTTCSEEEEEEECCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCChHHHHHHHHhhCCEEEEEEeccCCCCCccCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 233445556778999999999887544433221211 1111112368899999999998653
##### No 408 #####
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>2WSM_B HYDROGENASE EXPRESSION/FORMATION PROTEIN (HYPB); METAL BINDING PROTEIN; 2.3A {ARCHAEOGLOBUS FULGIDUS}
Probab=99.15 E-value=3.1e-14 Score=99.18 Aligned_cols=156 Identities=16% Similarity=0.050 Sum_probs=87.8 Template_Neff=11.100
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-------P-TVFENY-----VADIEV------------------D 52 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~-------~-t~~~~~-----~~~~~~------------------~ 52 (184)
......+|+|+|..|+|||||++++.......... + ...... ...... .
T Consensus 26 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (221)
T 2WSM_B 26 RESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKK 105 (221)
T ss_dssp HHTTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECC----------------CEECCCTTCSSCCHHHHHHHTGG
T ss_pred HhhCCeEEEEEcCCCCCHHHHHHHHHHHHcCCCeEEEEECCcCChhHHHHHHHcCCEEEEecCCCccccCHHHHHHHHHH
Confidence 34567899999999999999999998653110000 0 000000 000000 0
Q sequence1 53 GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRR 132 (184)
Q Consensus 53 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~ 132 (184)
.....+.+||++|...... .....+|++++|+|..+..++... +.... ..+.++|+||.|+......
T Consensus 106 ~~~~~~~iid~~g~~~~~~---~~~~~~d~~i~v~d~~~~~~~~~~---~~~~~-----~~~~ivv~nk~D~~~~~~~-- 172 (221)
T 2WSM_B 106 FSDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDVVEK---HPEIF-----RVADLIVINKVALAEAVGA-- 172 (221)
T ss_dssp GTTCSEEEEEEEECSSGGG---GCCCSCSEEEEEEEGGGCTTHHHH---CHHHH-----TTCSEEEEECGGGHHHHTC--
T ss_pred hcCCCEEEEcCCCCccccc---chhcCCCeEEEEEECCccchhHHh---CHHHH-----hhCCEEEEeChHhcchhcc--
Confidence 0134677899999743221 223567899999999876543321 11111 2456899999999864210
Q sequence1 133 ELAKMKQEPVKPEEGRDMAN-RIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
..+. ...... ......++.+|++++.|+++++.++...+.
T Consensus 173 ~~~~----------~~~~l~~~~~~~~~~~~s~~~~~gi~~l~~~l~~~~~ 213 (221)
T 2WSM_B 173 DVEK----------MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp CHHH----------HHHHHHHHCTTSEEEEEBTTTTBSHHHHHHHHHC---
T ss_pred cHHH----------HHHHHHHHCCCCeEEEeecccCCCHHHHHHHHHHHHH
Confidence 0000 000001 111256889999999999999998887664
##### No 409 #####
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>2GED_A Signal recognition particle receptor beta; protein transport, G protein, signal; HET: SO4; 2.2A {Saccharomyces cerevisiae}
Probab=99.15 E-value=3.4e-14 Score=96.69 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=75.9 Template_Neff=11.500
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPD----TD 81 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~----~~ 81 (184)
....+++++|..++|||+|++++............ ........ ....+.+||++|...+...+..++.. ++
T Consensus 46 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~ 120 (193)
T 2GED_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ---EPLSAADY--DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK 120 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------CC--CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHccCCCCCCccCC---CcceEEEe--CCCeEEEEECCCChhHHHHHHHHHHhhhcccc
Confidence 35679999999999999999998866542211110 00111111 23457899999987666666666666 89
Q sequence1 82 VILMCFSID-SPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRND 127 (184)
Q Consensus 82 ~~i~v~d~~-~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~ 127 (184)
++++|++++ ...++......+....... ....|+++++||+|....
T Consensus 121 ~~i~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~vv~~k~D~~~~ 171 (193)
T 2GED_A 121 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred EEEEEEECCCCHHhHHHHHHHHHHHHHHhhcccccCCcEEEEEechhhCCC
Confidence 999999998 6555555444444433321 136899999999998653
##### No 410 #####
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>1KK3_A eIF2gamma, GUANOSINE-5'-DIPHOSPHATE; initiation of translation, TRANSLATION; HET: GDP; 1.9A {Pyrococcus abyssi} SCOP: b.43.3.1, b.44.1.1, c.37.1.8
Probab=99.15 E-value=3.5e-14 Score=107.83 Aligned_cols=167 Identities=14% Similarity=0.072 Sum_probs=96.4 Template_Neff=10.600
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENY-VADIEV---------------------DGKQVEL 58 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~---~~t~~~~~-~~~~~~---------------------~~~~~~~ 58 (184)
.....++|+++|..++|||||+++|......... .+...... ...... ......+
T Consensus 6 ~~~~~~~i~iiG~~~~GKStLi~~l~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (410)
T 1KK3_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHTCCCC--CCTTSSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCccccCCccccccCeEeEEeeecceEeeCCCCCCcccCCCCCCCCCCcceeeeE
Confidence 3456789999999999999999998864321110 00000000 000000 0012457
Q sequence1 59 ALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMK 138 (184)
Q Consensus 59 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~ 138 (184)
.+||+||++.+...+......+|++++|+|..+........+.+ ..+... ...|+++++||+|+...........+..
T Consensus 86 ~liD~pG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~~~~~~l-~~~~~~-~~~~iivvinK~D~~~~~~~~~~~~~i~ 163 (410)
T 1KK3_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MALQII-GQKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSCCHHHHHHH-HHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHHhcCCEEEEEEECCCCCCChHHHHHH-HHHHHh-CCCeEEEEEEccccCCHHHHHHHHHHHH
Confidence 89999998877666666778899999999988653233332222 222211 2478899999999876322111111100
Q sequence1 139 QEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRA 180 (184)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184)
. ..... ......++.+|+.++.++.++++.+...
T Consensus 164 ~------~~~~~--~~~~~~~~~~S~~~g~~i~~l~~~l~~~ 197 (410)
T 1KK3_A 164 E------FIEGT--VAENAPIIPISALHGANIDVLVKAIEDF 197 (410)
T ss_dssp H------HHTTS--TTTTCCEEECBTTTTBTHHHHHHHHHHH
T ss_pred H------HHhcc--chhcCCEEecccccCCCHHHHHHHHHHh
Confidence 0 00000 0112457889999999999888877654
##### No 411 #####
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>1S0U_A Translation initiation factor 2 gamma; translation initiation, GTPase, EF-1A, tRNA; 2.4A {Methanocaldococcus jannaschii} SCOP: c.37.1.8, b.43.3.1, b.44.1.1
Probab=99.13 E-value=4.6e-14 Score=107.15 Aligned_cols=168 Identities=16% Similarity=0.122 Sum_probs=89.1 Template_Neff=10.500
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY---VPTVFENY-VADIEV---------------------DGKQVE 57 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~---~~t~~~~~-~~~~~~---------------------~~~~~~ 57 (184)
......++|+++|..++|||||+++|......... ........ ...... ......
T Consensus 3 ~~~~~~~~I~v~G~~~~GKStLi~~L~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (408)
T 1S0U_A 3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRR 82 (408)
T ss_dssp --CCCCEEEEEESCTTSSHHHHHHHHHSCCCC-------CCCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEE
T ss_pred cccCCcEEEEEEcCCCCCHHHHHHHHhCcccccChhHHhcceEeEEEEeeceeccCCCCCCcccCCCCCcccCCCCCceE
Confidence 34567889999999999999999999754221110 00000000 000000 001245
Q sequence1 58 LALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKM 137 (184)
Q Consensus 58 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~ 137 (184)
+.+||+||+..+...+......+|++++|+|.+.........+. ...+... ...++++++||+|+.............
T Consensus 83 i~liD~pG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~~~~~~-l~~~~~~-~~~~iivvinK~D~~~~~~~~~~~~~i 160 (408)
T 1S0U_A 83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEH-LMALEIL-GIDKIIIVQNKIDLVDEKQAEENYEQI 160 (408)
T ss_dssp EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHH-HHHHHHT-TCCCEEEEEECTTSSCTTTTTTHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCEEEEEEECCCCCCcHHHHHH-HHHHHHh-CCCcEEEEEEchhcCCHHHHHHHHHHH
Confidence 78999999887766666677789999999998764222222222 2222211 234689999999987532211111110
Q sequence1 138 KQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRA 180 (184)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~ 180 (184)
.. ..... ......++.+|+.++.++.++++++.+.
T Consensus 161 ~~------~~~~~--~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 195 (408)
T 1S0U_A 161 KE------FVKGT--IAENAPIIPISAHHEANIDVLLKAIQDF 195 (408)
T ss_dssp HH------HHTTS--TTTTCCEEEC------CHHHHHHHHHHH
T ss_pred HH------HHHHh--CCccCCEEECCcccCCCHHHHHHHHHHh
Confidence 00 00000 0112467889999999999888877554
##### No 412 #####
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>4ZU9_A Elongation factor SelB; Small GTPase, EF-Tu like, TRANSLATION; HET: SO4, GNP, MSE; 3.191A {Aquifex aeolicus VF5}
Probab=99.12 E-value=5e-14 Score=111.68 Aligned_cols=161 Identities=16% Similarity=0.068 Sum_probs=95.0 Template_Neff=9.400
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQF---PEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDV 82 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~---~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (184)
+.++|+++|..++|||||+++|.+... .....+..... ....+..++....+.+||+||++.+...+......+|+
T Consensus 2 ~~~~I~v~G~~~sGKStLi~~L~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~i~liD~pG~~~~~~~~~~~~~~~d~ 81 (582)
T 4ZU9_A 2 KYILFATAGHVDHGKTTLIKTLTGIDTDRLPEEKKRGLSIDIGFAYIDFPDINTRLEIIDVPGHERFIKNAIAGICSASG 81 (582)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHTSCCSCCSHHHHHHTCCCSCEEEEEEETTTTEEEEEEECCCSGGGHHHHHHHHHTCSE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhcccccCCHHHHHcCceeEEEEEEEEcCCCCceEEEEeCCCCHHHHHHHHHHHhcCCE
Confidence 467899999999999999999986322 11111111111 11122222223578999999999887777777888999
Q sequence1 83 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR-IGAFGYME 161 (184)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 161 (184)
+++|++.++.... ...+.+ ..+... ...++++++||+|+...........+ ...+... ....+++.
T Consensus 82 ~ilVvda~~g~~~-qt~e~l-~~~~~~-~~~~iivvinK~D~~~~~~~~~~~~~----------i~~~l~~~~~~~~ii~ 148 (582)
T 4ZU9_A 82 LILVVDPNEGIMP-QTIEHL-RVAKSF-GIKHGIAVLTKMDKVDEELAHIAEEE----------LIAFLEKEEMNMEIVK 148 (582)
T ss_dssp EEEEECTTTCSCH-HHHHHH-HHHHHT-TCCEEEEEECCGGGSCHHHHHHHHHH----------HHHHHHHTTCCCEEEE
T ss_pred EEEEEcCCCCCCh-HHHHHH-HHHHHh-CCCEEEEEEecccCCCHHHHHHHHHH----------HHHHHHhcCCCCeEEE
Confidence 9999998763211 121222 222111 23446888999998753211000000 0001000 01256888
Q sequence1 162 CSAKTKDGVREVFEMATRA 180 (184)
Q Consensus 162 ~s~~~~~~i~~~~~~~~~~ 180 (184)
+|+.++.|+.++++++...
T Consensus 149 vSa~~g~~i~~l~~~l~~~ 167 (582)
T 4ZU9_A 149 VSAVTGQGIEDLKNSIKKL 167 (582)
T ss_dssp CBTTTTBTHHHHHHHHHHH
T ss_pred eecCCCCCHHHHHHHHHHH
Confidence 9999999998887766543
##### No 413 #####
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>2GED_B Signal recognition particle receptor beta; protein transport, G protein, signal; HET: SO4; 2.2A {Saccharomyces cerevisiae}
Probab=99.12 E-value=5.3e-14 Score=95.68 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=72.9 Template_Neff=11.600
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPD----TD 81 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~----~~ 81 (184)
.+..+++++|..++|||++++++............ .....+.. ....+.+||++|...+...+..++.. ++
T Consensus 46 ~~~~~i~v~G~~~~GKstl~~~l~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~ 120 (193)
T 2GED_B 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ---EPLSAADY--DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK 120 (193)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHC-------------------CCC--CCTTCSEEEETTCCEESCCHHHHHHHHGGGEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHccCCCCCeeecc---ccceEEEe--CCceEEEEeCCCChhHHHhHHHHHHhcccccc
Confidence 46789999999999999999998866532211110 00111111 23467899999987776666666666 89
Q sequence1 82 VILMCFSID-SPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRND 127 (184)
Q Consensus 82 ~~i~v~d~~-~~~s~~~~~~~~~~~~~~~----~~~~~~~vv~nK~D~~~~ 127 (184)
++++|++.+ ...++......+....... ....|+++++||.|....
T Consensus 121 ~~l~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vivv~~k~D~~~~ 171 (193)
T 2GED_B 121 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHHHHhhcccccccCCeEEEEEechhcCCC
Confidence 999999998 5555555444444333221 136889999999998653
##### No 414 #####
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>5CYO_A Septin-9; septin 9 gtpase domain, HYDROLASE; HET: GDP; 2.0354A {Homo sapiens}
Probab=99.12 E-value=5.4e-14 Score=101.25 Aligned_cols=118 Identities=19% Similarity=0.175 Sum_probs=67.7 Template_Neff=10.700
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-----EN---YVA--DIEVDGKQVELALWDTAGLEDYDRL---- 72 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~-----~~---~~~--~~~~~~~~~~~~i~D~~g~~~~~~~---- 72 (184)
.+++|+++|..|+|||||++++.............. .. ... .....+....+.+||+||.......
T Consensus 3 ~~~~i~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~ 82 (274)
T 5CYO_A 3 FEFNIMVVGQSGLGKSTLINTLFKSKISRKSVQPTSEERIPKTIEIKSITHDIEEKGVRMKLTVIDTPGFGDHINNENCW 82 (274)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHHHSCCCC-CCEECCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCCCCSSBCTTTT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCCCcccCCCceEEEEEEEEEeeCCEEEEEEEEEcCCCCcCCCccccH
Confidence 468999999999999999999987644322111100 00 000 0111122356899999996543111
Q sequence1 73 ----------RPLSYPD--------------TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128 (184)
Q Consensus 73 ----------~~~~~~~--------------~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~ 128 (184)
+..++.. +++++++++.+......... .+...+ ....|+++|+||+|.....
T Consensus 83 ~~i~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~l---~~~~~vi~Vi~K~D~~~~~ 158 (274)
T 5CYO_A 83 QPIMKFINDQYEKYLQEEVNINRKKRIPDTRVHCCLYFIPATGHSLRPLDI-EFMKRL---SKVVNIVPVIAKADTLTLE 158 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCSSCCCCCCCEEEEEECCCSSCCCHHHH-HHHHHH---HTTSEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCCceeEEEEEecCCCCCCCHHHH-HHHHHH---hhhCCeEEEEeccCCCCHH
Confidence 2222222 78899998876533222221 111222 2357899999999998643
##### No 415 #####
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>4ZKD_A Superkiller protein 7 (Ski7); GTPase, translation, NGD, Ski, hydrolase; HET: GDP; 2.181A {Saccharomyces cerevisiae}
Probab=99.12 E-value=5.9e-14 Score=109.31 Aligned_cols=167 Identities=19% Similarity=0.194 Sum_probs=88.1 Template_Neff=10.100
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-------------P-----------------TVFENY-VADIEVD- 52 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~-------------~-----------------t~~~~~-~~~~~~~- 52 (184)
..+..+|+++|..++|||||+++|.......... + ...... .......
T Consensus 16 ~~~~~~I~viG~~~sGKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 95 (499)
T 4ZKD_A 16 HPLNLTCLFLGDTNAGKSTLLGHLLYDLNEISMSSMRELQKKSSNLDPSSSNSFKVILDNTKTERENGFSMFKKVIQVEN 95 (499)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCSCHHHHHHHHHHGGGGSSCSCCTTHHHHCCSHHHHHHTSCCSCEEEEECS
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHhcCCCCCccchhhhhcCCcchhhcCCceeeEEEEEec
Confidence 3467899999999999999999998754321000 0 000000 0000000
Q sequence1 53 ---GKQVELALWDTAGLEDYDR---LRPLSYPDTDVILMCFSIDSPD---SLENIP---EKWTPEVKHF----CPNVPII 116 (184)
Q Consensus 53 ---~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~~i~v~d~~~~~---s~~~~~---~~~~~~~~~~----~~~~~~~ 116 (184)
.....+.+||+||+..+.. ....++..+|++++|+|++... ++.... ..+....... ....|++
T Consensus 96 ~~~~~~~~i~liD~pG~~~~~~~~~~~~~~~~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 175 (499)
T 4ZKD_A 96 DLLPPSSTLTLIDTPGSIKYFNKETLNSILTFDPEVYVLVIDCNYDSWEKSLDGPNNQIYEILKVISYLNKNSACKKHLI 175 (499)
T ss_dssp TTSCTTEEEEEEECCCSHHHCCCCCHHHHHHHCCSEEEEEEECSTTHHHHTCCSTTSHHHHHHHHHTTTTTTCSSCCCEE
T ss_pred CCCCCCccEEEEECCCChhcCChhHhhHHhhcCCCEEEEEEECCCchhhhccCCcchHHHHHHHHHHHhccccccCCEEE
Confidence 2345788999999886642 2223347899999999998751 121111 1111111111 1368899
Q sequence1 117 LVGNKKDLRNDEHTR-RELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175 (184)
Q Consensus 117 vv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 175 (184)
+++||+|+....... ..+........ .....+. .....++++|++++.|+.++++
T Consensus 176 vvinK~D~~~~~~~~~~~i~~~l~~~l--~~~~~~~--~~~~~~i~~Sa~~g~~i~~~~~ 231 (499)
T 4ZKD_A 176 ILLNKADLISWDKHRLEMIQSELNYVL--KENFQWT--DAEFQFIPCSGLLGSNLNKTEN 231 (499)
T ss_dssp EEEECGGGGTTCHHHHHHHHHHHHHCC--CCCTCCC--GGGEEEEECBTTTTBTTCC---
T ss_pred EEEECccccCCCHHHHHHHHHHHHHHH--HHhcCCC--cccCEEEEcccccccccccccc
Confidence 999999987532110 00000000000 0000010 0125788999999999887654
##### No 416 #####
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>4ZKE_A Superkiller protein 7 (Ski7); GTPase, translation, NGD, Ski, hydrolase; HET: PGE, GTP; 2.251A {Saccharomyces cerevisiae}
Probab=99.12 E-value=5.9e-14 Score=109.31 Aligned_cols=167 Identities=19% Similarity=0.194 Sum_probs=88.1 Template_Neff=10.100
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-------------P-----------------TVFENY-VADIEVD- 52 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~-------------~-----------------t~~~~~-~~~~~~~- 52 (184)
..+..+|+++|..++|||||+++|.......... + ...... .......
T Consensus 16 ~~~~~~I~viG~~~sGKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 95 (499)
T 4ZKE_A 16 HPLNLTCLFLGDTNAGKSTLLGHLLYDLNEISMSSMRELQKKSSNLDPSSSNSFKVILDNTKTERENGFSMFKKVIQVEN 95 (499)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCSCHHHHHHHHHHHHHSCTTTCCTTHHHHCCSHHHHHHTSCCSCEEEEECS
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHhcCCCCCccchhhhhcCCcchhhcCCceeeEEEEEec
Confidence 3467899999999999999999998754321000 0 000000 0000000
Q sequence1 53 ---GKQVELALWDTAGLEDYDR---LRPLSYPDTDVILMCFSIDSPD---SLENIP---EKWTPEVKHF----CPNVPII 116 (184)
Q Consensus 53 ---~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~~i~v~d~~~~~---s~~~~~---~~~~~~~~~~----~~~~~~~ 116 (184)
.....+.+||+||+..+.. ....++..+|++++|+|++... ++.... ..+....... ....|++
T Consensus 96 ~~~~~~~~i~liD~pG~~~~~~~~~~~~~~~~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 175 (499)
T 4ZKE_A 96 DLLPPSSTLTLIDTPGSIKYFNKETLNSILTFDPEVYVLVIDCNYDSWEKSLDGPNNQIYEILKVISYLNKNSACKKHLI 175 (499)
T ss_dssp TTSCTTEEEEEEECCCSHHHCCCCCHHHHHHHCCSEEEEEEECSTTHHHHTCCSTTCHHHHHHHHHTTSSTTCSSCCCEE
T ss_pred CCCCCCccEEEEECCCChhcCChhHhhHHhhcCCCEEEEEEECCCchhhhccCCcchHHHHHHHHHHHhccccccCCEEE
Confidence 2345788999999886642 2223347899999999998751 121111 1111111111 1368899
Q sequence1 117 LVGNKKDLRNDEHTR-RELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175 (184)
Q Consensus 117 vv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 175 (184)
+++||+|+....... ..+........ .....+. .....++++|++++.|+.++++
T Consensus 176 vvinK~D~~~~~~~~~~~i~~~l~~~l--~~~~~~~--~~~~~~i~~Sa~~g~~i~~~~~ 231 (499)
T 4ZKE_A 176 ILLNKADLISWDKHRLEMIQSELNYVL--KENFQWT--DAEFQFIPCSGLLGSNLNKTEN 231 (499)
T ss_dssp EEEECGGGGTTCHHHHHHHHHHHHHHH--HHTTCCC--GGGEEEEECBTTTTBTTCC---
T ss_pred EEEECccccCCCHHHHHHHHHHHHHHH--HHhcCCC--cccCEEEEcccccccccccccc
Confidence 999999987532110 00000000000 0000010 0125788999999999887654
##### No 417 #####
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>3WY9_B Elongation factor 1-alpha, 50S ribosomal; multi-domain, GTPase, aminoacyl-tRNA delivery, GTP; HET: GDP; 2.3A {Pyrococcus horikoshii OT3}
Probab=99.11 E-value=6.2e-14 Score=107.22 Aligned_cols=159 Identities=15% Similarity=0.108 Sum_probs=87.7 Template_Neff=10.600
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV-----------------------------PTVFENYVADIEVDG 53 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~-----------------------------~t~~~~~~~~~~~~~ 53 (184)
+...+..+|+++|..++|||||+++++......... ..... .........
T Consensus 2 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~-~~~~~~~~~ 80 (434)
T 3WY9_B 2 PKEKPHVNIVFIGHVDHGKSTTIGRLLYDTGNIPETIIKKFEEMGEKGKSFKFAWVMDRLKEERERGITI-DVAHTKFET 80 (434)
T ss_dssp ---CCEEEEEEESSTTSSHHHHHHHHHHHHTCCCHHHHHHHC-------CCCHHHHHHHHHHHHHTTCCH-HHHCCEEEE
T ss_pred CCCCCcEEEEEEeCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHhhhcCCccHHHHHHhccHHHHhhCccc-chheEEEec
Confidence 455678899999999999999999987432110000 00000 000001111
Q sequence1 54 KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRE 133 (184)
Q Consensus 54 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~ 133 (184)
....+.+||+||+..+...+......+|++++|+|.++... ... ..+...+... ...++++++||+|+.......
T Consensus 81 ~~~~~~liD~pG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~-~~~-~~~l~~~~~~-~~~~~ivv~nK~D~~~~~~~~-- 155 (434)
T 3WY9_B 81 PHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATDGVM-PQT-KEHAFLARTL-GIKHIIVTINKMDMVNYDQKV-- 155 (434)
T ss_dssp TTEEEEEEECSSSTTHHHHHHHTSSCCSEEEEEEETTTCSC-HHH-HHHHHHHHHT-TCCEEEEEEECGGGGTTCHHH--
T ss_pred CCcEEEEEeCCCcHHHHHHHHHHHhhCCEEEEEEECCCCCC-HHH-HHHHHHHHHh-CCCEEEEEEeccCCCCCCHHH--
Confidence 23467899999998887777777788999999999876321 111 1122222221 234589999999987532110
Q sequence1 134 LAKMKQEPVKPEEGRDMANRI--GAFGYMECSAKTKDGVREV 173 (184)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~ 173 (184)
..... .....+.... ....++.+|+.++.++.++
T Consensus 156 ~~~~~------~~~~~~~~~~~~~~~~~i~~Sa~~g~~i~~~ 191 (434)
T 3WY9_B 156 FEKVK------AQVEKLLKTLGYKDFPVIPTSAWNGDNVVKK 191 (434)
T ss_dssp HHHHH------HHHHHHHHHTTCCCCCEEECCTTTCBTTTBC
T ss_pred HHHHH------HHHHHHHHHhCCCCCCEEEecccCCCccccc
Confidence 00000 0001111111 1256788899998887543
##### No 418 #####
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>1R5B_A Eukaryotic peptide chain release factor; TRANSLATION TERMINATION, PEPTIDE RELEASE, GTPASE; 2.35A {Schizosaccharomyces pombe} SCOP: c.37.1.8, b.43.3.1, b.44.1.1
Probab=99.11 E-value=6.7e-14 Score=108.03 Aligned_cols=168 Identities=14% Similarity=0.023 Sum_probs=80.0 Template_Neff=10.500
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFP--EV------------YV----------PT------VFENYVADIEVDGK 54 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~--~~------------~~----------~t------~~~~~~~~~~~~~~ 54 (184)
..+.++|+++|..++|||||+++|...... .. .. .. ..............
T Consensus 40 ~~~~~~I~viG~~~sGKStli~~L~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~~~t~~~~~~~~~~~ 119 (467)
T 1R5B_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCcEEEEEEecCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCchhHHHHHhcCCHHHHHcCceeeeEEEEeecC
Confidence 346789999999999999999988621100 00 00 00 00000000011112
Q sequence1 55 QVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDS------LENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128 (184)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~ 128 (184)
...+.+||+||+..+...+......+|++++|+|+++... .....+.+ ..... ....++++++||+|+....
T Consensus 120 ~~~i~liDtpG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~~~~~~~~~~~~l-~~~~~-~~~~~iivv~nK~D~~~~~ 197 (467)
T 1R5B_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA-VLART-QGINHLVVVINKMDEPSVQ 197 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH-HHHHH-TTCSSEEEEEECTTSTTCS
T ss_pred CcEEEEEeCCCChhHHHHHHHHHhcCCEEEEEEECCCCcccccccCCCchHHHH-HHHHH-cCCCEEEEEEEcCCCCCCC
Confidence 3467899999998887777777889999999999886431 11111111 11111 1223489999999986422
Q sequence1 129 HTRRELAKMKQEPVKP-EEGRDMANRIGAFGYMECSAKTKDGVREVFE 175 (184)
Q Consensus 129 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 175 (184)
................ .....+. ......++++|+.++.|+.+++.
T Consensus 198 ~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~i~vSa~~g~~i~~~~~ 244 (467)
T 1R5B_A 198 WSEERYKECVDKLSMFLRRVAGYN-SKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCC-HHHHEEEEECBTTTTBTTSSCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCC-CCCCceEEEeeeccccccccCCC
Confidence 1111111100000000 0000000 00125788999999999887654
##### No 419 #####
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>5TY0_A Adenosylhomocysteinase (E.C.3.3.1.1); Structural Genomics, Center for Structural; HET: BGC; 2.22A {Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)}
Probab=99.11 E-value=6.8e-14 Score=106.57 Aligned_cols=119 Identities=16% Similarity=0.055 Sum_probs=74.3 Template_Neff=10.800
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-----FENY--------------VADIEV-----DGKQVELA 59 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~-----~~~~--------------~~~~~~-----~~~~~~~~ 59 (184)
......+|+++|..++|||||++++............. .... ...... ......+.
T Consensus 7 ~~~~~~~i~iiG~~~~GKStLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (422)
T 5TY0_A 7 PLKLYRNIGIAAHVDAGKTTTTERVLYYTGMSHKIGEVHDGAATMDWMVQEQERGITITSAATTCYWSGMDKQFESHRIN 86 (422)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHHHHC-------------------------CCSEEEEEECCTTSCSCCEEEE
T ss_pred chhhCcEEEEEeCCCCChHHHHHHHHHHhCCcccceeccCCcceeecHHHHHHhCCChhheeEeeeccCcccccccceEE
Confidence 45667899999999999999999987643211100000 0000 000000 01235789
Q sequence1 60 LWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184)
Q Consensus 60 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184)
+||+||+..+...+...+..+|++++|+|......... ...+.. +. ....|+++++||+|+..
T Consensus 87 liDtpG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~~-~~~l~~-~~--~~~~~~ivv~nK~D~~~ 149 (422)
T 5TY0_A 87 IIDTPGHVDFMIEVERSLRVLDGAVVVFDSVAGVEPQS-ETVWRQ-AN--KYGVPRIVFVNKMDRMG 149 (422)
T ss_dssp EECCCSCSSCHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHH-HH--HTTCCEEEEEECTTSTT
T ss_pred EEcCCCCccHHHHHHHHHhhCCEEEEEEECCCCCChHH-HHHHHH-HH--HHCCCEEEEEeCCccCC
Confidence 99999998887777777888999999999876432221 112221 21 13578899999999875
##### No 420 #####
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>3CB4_D GTP-binding protein lepA; GTPAse, OB-fold, GTP-binding, Membrane, Nucleotide-binding; 2.8A {Escherichia coli}
Probab=99.11 E-value=6.9e-14 Score=111.20 Aligned_cols=159 Identities=20% Similarity=0.206 Sum_probs=91.3 Template_Neff=8.800
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFP--E---------V-----YVPTVFENYVADIEV---DGKQVELALWDTAGLE 67 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~--~---------~-----~~~t~~~~~~~~~~~---~~~~~~~~i~D~~g~~ 67 (184)
+..+++++|..++|||||+++|...... . . ....+.......+.. ++....+.+||+||+.
T Consensus 3 ~irni~IiG~~~~GKSTL~~~Ll~~~~~~~~~~~~~~~~d~~~~e~ergiti~~~~~~~~~~~~~~~~~~i~liDtPGh~ 82 (599)
T 3CB4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEECCCCCG
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHhCCCChHHHHHHHHhcchhHHhhCeeeEeEEEEEEeeCCCCCEEEEEEEECCCCh
Confidence 4568999999999999999998753110 0 0 000000000000111 1123578999999999
Q sequence1 68 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEG 147 (184)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
.+...+...+..+|++++|+|+.+....+.. ..+..... ...|+++|+||+|+..... ...... .
T Consensus 83 df~~~~~~~l~~~D~~ilvvDa~~g~~~qt~-~~l~~~~~---~~lpiivViNKiD~~~~~~-~~~~~~----------i 147 (599)
T 3CB4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAME---MDLEVVPVLNKIDLPAADP-ERVAEE----------I 147 (599)
T ss_dssp GGHHHHHHHHTTCSEEEEEEESSSCCCHHHH-HHHHHHHH---TTCEEEEEEECCSSTTCCH-HHHHHH----------C
T ss_pred HhHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHh---CCCCEEEEEecCCCCCCCH-HHHHHH----------H
Confidence 8887787888899999999999875433222 22222221 2578999999999865211 000000 0
Q sequence1 148 RDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 181 (184)
Q Consensus 148 ~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 181 (184)
..... .....++.+|++++.++.++++++.+.+
T Consensus 148 ~~~l~-~~~~~ii~~Sa~~g~gi~~Lld~I~~~i 180 (599)
T 3CB4_D 148 EDIVG-IDATDAVRCSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp CCCCC-CCCTTCEECCSSSCTTHHHHHHHHHHHS
T ss_pred HHHhC-CCCccEEEEecCCCCCHHHHHHHHHHhC
Confidence 00000 0113577899999999998888776554
##### No 421 #####
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>3VQT_A Peptide chain release factor 3; translation, release factor, GTPase; HET: GDP; 1.8A {Desulfovibrio vulgaris}
Probab=99.10 E-value=7.4e-14 Score=110.01 Aligned_cols=118 Identities=16% Similarity=0.116 Sum_probs=75.3 Template_Neff=9.400
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT----------VF-----------ENYVADIEVDGKQVELALWDT 63 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t----------~~-----------~~~~~~~~~~~~~~~~~i~D~ 63 (184)
.....+|+++|..++|||||++++..........+. .. ...............+.+||+
T Consensus 28 ~~~~~~I~iiG~~~~GKTtLi~~ll~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDt 107 (548)
T 3VQT_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDT 107 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECC
T ss_pred HHhCcEEEEEcCCCCCHHHHHHHHHhhcCCccccccccccccccccccchHHHHHHcCCcceeeeeeeecCCeEEEEEEC
Confidence 355689999999999999999998854221100000 00 000001111122357899999
Q sequence1 64 AGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184)
Q Consensus 64 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184)
||+..+...+..++..+|++++|+|+.+. +......+...... ...|+++++||+|+..
T Consensus 108 pG~~d~~~~~~~~l~~~D~~llVid~~~~--~~~~~~~~l~~~~~--~~~p~iivinK~D~~~ 166 (548)
T 3VQT_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKG--VEAQTRKLMDVCRM--RATPVMTFVNKMDREA 166 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTB--SCHHHHHHHHHHHH--TTCCEEEEEECTTSCC
T ss_pred CCCCcchHHHHHHHhhCCEEEEEEeCCCC--ccHHHHHHHHHHHH--hCCCEEEEEeCCCCCC
Confidence 99988887787888899999999999862 22221222222221 3578999999999875
##### No 422 #####
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>3VR1_B Peptide chain release factor 3; translation, release factor, GTPase; HET: G4P; 3.0A {Desulfovibrio vulgaris}
Probab=99.10 E-value=7.4e-14 Score=110.01 Aligned_cols=118 Identities=16% Similarity=0.116 Sum_probs=75.5 Template_Neff=9.400
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT----------VF-----------ENYVADIEVDGKQVELALWDT 63 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t----------~~-----------~~~~~~~~~~~~~~~~~i~D~ 63 (184)
.....+|+++|..++|||||++++..........+. .. ...............+.+||+
T Consensus 28 ~~~~~~I~iiG~~~~GKTtLi~~ll~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~i~liDt 107 (548)
T 3VR1_B 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDT 107 (548)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHTTEEEEEETTEEEEEECC
T ss_pred HHhCcEEEEEcCCCCCHHHHHHHHHhhcCCccccccccccccccccccchHHHHHHcCCcceeeeeeeecCCeEEEEEEC
Confidence 355689999999999999999998854221100000 00 000001111122357899999
Q sequence1 64 AGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184)
Q Consensus 64 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184)
||+..+...+..++..+|++++|+|+.+. +......+...... ...|+++++||+|+..
T Consensus 108 pG~~d~~~~~~~~l~~~D~~llVid~~~~--~~~~~~~~l~~~~~--~~~p~iivinK~D~~~ 166 (548)
T 3VR1_B 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKG--VEAQTRKLMDVCRM--RATPVMTFVNKMDREA 166 (548)
T ss_dssp CCGGGCSHHHHHHTTSCSEEEEEEETTTB--SCHHHHHHHHHHHH--TTCCEEEEEECTTSCC
T ss_pred CCCCcchHHHHHHHhhCCEEEEEEeCCCC--ccHHHHHHHHHHHH--hCCCEEEEEeCCCCCC
Confidence 99988887787888899999999999862 22221222222221 3578999999999875
##### No 423 #####
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>2QNR_B Septin-2; septin, Structural Genomics Consortium, SGC; HET: GDP; 2.6A {Homo sapiens}
Probab=99.10 E-value=7.8e-14 Score=101.78 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=61.4 Template_Neff=10.600
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT--------VFE--NYVADIEVDGKQVELALWDTAGLED----- 68 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t--------~~~--~~~~~~~~~~~~~~~~i~D~~g~~~----- 68 (184)
.....++|+++|..|+|||||++++....+.....+. ... ........++..+.+.+||+||...
T Consensus 14 ~~~~~~~I~vvG~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~DtpG~~~~~~~~ 93 (301)
T 2QNR_B 14 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 93 (301)
T ss_dssp ---CEEEEEEEEETTSSHHHHHHHHHT-----------CC--CCSHHHHHHTCEEEECCEEE--EEEEEECCT-H-----
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCCCCCCCCeeEEEEEEEEEeeCCEEEEEEEEEcCCCCCCCCcc
Confidence 3456789999999999999999999876543221110 000 0011112223345789999999322
Q sequence1 69 --YDRL-------RPLSYP-------------DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184)
Q Consensus 69 --~~~~-------~~~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184)
+..+ +..++. .+++++++++..... .......+...+ ....|+++|+||+|...
T Consensus 94 ~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~d~r~~~~l~~i~~~~~~-~~~~~~~~~~~l---~~~~~vi~v~~k~D~~~ 169 (301)
T 2QNR_B 94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG-LKPLDVAFMKAI---HNKVNIVPVIAKADTLT 169 (301)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCCCCEEEEEECTTSSS-CCHHHHHHHHHH---TTTSCEEEEESCGGGSC
T ss_pred cchHHHHHHHHHHHHHHHHHhhCCcccccCCCceeEEEEEECCCCCC-CCHHHHHHHHHH---cccCCEEEEEeCcccCC
Confidence 2111 111111 267888887766432 111111111112 34688999999999976
Q sequence1 127 D 127 (184)
Q Consensus 127 ~ 127 (184)
.
T Consensus 170 ~ 170 (301)
T 2QNR_B 170 L 170 (301)
T ss_dssp H
T ss_pred H
Confidence 4
##### No 424 #####
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>4CRN_P ERF3 IN RIBOSOME BOUND ERF1-ERF3-GDPNP; TRANSLATION, TERMINATION, CRYO-EM; HET: GNP; 9.1A {SACCHAROMYCES CEREVISIAE}
Probab=99.09 E-value=8.5e-14 Score=106.41 Aligned_cols=160 Identities=13% Similarity=0.067 Sum_probs=88.1 Template_Neff=10.500
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY------------------------VPTV-----FENY-VADIEVDGK 54 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~------------------------~~t~-----~~~~-~~~~~~~~~ 54 (184)
..+.++|+++|..++|||||+++|+........ .... .... .........
T Consensus 2 ~~~~~~i~v~G~~~sGKSTli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~~~t~~~~~~~~~~~ 81 (430)
T 4CRN_P 2 GKDHVSLIFMGHVDAGKSTMGGNLLYLTGSVDKRTIEKYEREAKDAGRQGWYLSWVMDTNKEERNDGKTIEVGKAYFETE 81 (430)
T ss_dssp CSCCCCCCEEECSSSCHHHHHHHHHTTTTSSCCTTHHHHTTSCCCCTTTCCSSSCSSHHHHHTTTCTTCSSTTCBCCBCS
T ss_pred CCceEEEEEEcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCccHHHHHhcCCHHHHhhCceeeeEEEEEEcC
Confidence 356789999999999999999998733110000 0000 0000 000011112
Q sequence1 55 QVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDS---L---ENIPEKWTPEVKHFCPNVP-IILVGNKKDLRND 127 (184)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-~~vv~nK~D~~~~ 127 (184)
...+.+||+||+.++...+......+|++++|+|+++... + ....+ +...+.. ...| +++++||+|+...
T Consensus 82 ~~~i~liD~pG~~~~~~~~~~~~~~~d~~ilVvd~~~~~~~~~~~~~~~~~~-~l~~~~~--~~~~~iivv~nK~D~~~~ 158 (430)
T 4CRN_P 82 KRRYTILDAPGHKMYVSEMIGGASQADVGVLVISARKGEYETGFERGGQTRE-HALLAKT--QGVNKMVVVVNKMDDPTV 158 (430)
T ss_dssp SCBCCBCBCCSSSSHHHCCCCCSCCCSSCEEEECCSHHHHHHTTTCCSTTSH-HHHTTTT--TCCCCCCEEECCSSTTTT
T ss_pred CcEEEEEeCCCchhhHHHHHHHHhcCCEEEEEEeCCCCcccccccCCCchHH-HHHHHHH--hCCCEEEEEEECCCCCCC
Confidence 2467899999998887777777889999999999876321 1 11111 1111221 1344 8999999998642
Q sequence1 128 EHTRRELAKMKQEPVKPEEGRDMANRI-----GAFGYMECSAKTKDGVREV 173 (184)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~~~ 173 (184)
........... .....+.... ....++++|+.++.|+.++
T Consensus 159 ~~~~~~~~~~~------~~l~~~~~~~~~~~~~~~~~i~vSa~~g~~i~~~ 203 (430)
T 4CRN_P 159 NWSKERYDQCV------SNVSNFLRAIGYNIKTDVVFMPVSGYSGANLKDH 203 (430)
T ss_dssp TTCSCSHHHHH------HHHHHHHSSSSCCCSTTCCCEECBTTTBCSSCSC
T ss_pred CCCHHHHHHHH------HHHHHHHHHcCCCCCCCeEEEEcCCCccchhhcC
Confidence 11111111000 0011111111 1256888999999988754
##### No 425 #####
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>4CXG_A ELONGATION FACTOR 1A, 40S RIBOSOMAL; TRANSLATION, MAMMALIAN 80S RIBOSOME, ELONGATION; HET: M2G, OMC, PHE, 5MC, MIA, 7MG, 1MA, 2MG, 5MU, PSU, H2U; 8.7A {ORYCTOLAGUS CUNICULUS}
Probab=99.09 E-value=8.7e-14 Score=106.46 Aligned_cols=120 Identities=14% Similarity=0.105 Sum_probs=71.9 Template_Neff=10.700
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFP---------------------------EVY----VPTVFENYVADIEVD 52 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~---------------------------~~~----~~t~~~~~~~~~~~~ 52 (184)
...+.++|+++|..++|||||++++...... +.. ....... .......
T Consensus 2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~-~~~~~~~ 80 (437)
T 4CXG_A 2 AEKPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERERGITID-LTFMKFE 80 (437)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGTTHHHHCCSHHHHHHTSCCS-CEEEEEE
T ss_pred CCCCcEEEEEEeCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCcchHHHHHHhcCHHHHhcCceee-eeEEEEE
Confidence 3456789999999999999999998753100 000 0000000 0000111
Q sequence1 53 GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDS------LENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184)
Q Consensus 53 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184)
.....+.+||+||+.++...+......+|++++|+|+..... ..... .+....... ...++++++||+|+..
T Consensus 81 ~~~~~~~l~D~pG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~~~~~~~~~~-~~l~~~~~~-~~~~~ivv~nK~D~~~ 158 (437)
T 4CXG_A 81 TKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMSTEGQTR-EHLLLARTM-GIEQIIVAVNKMDAPD 158 (437)
T ss_dssp CSSCEEEEEECCCSGGGHHHHHHHHHTCSEEEEEEECSTTHHHHHTSTTCHHH-HHHHHHHHT-TCCEEEEEEECTTSTT
T ss_pred cCCeEEEEEeCCCchHHHHHHHHHHccCCEEEEEEECCCCccccCcCCCCchH-HHHHHHHHh-CCCEEEEEEECCCCCC
Confidence 123467899999998887777777889999999999876431 11111 122222111 2234899999999864
##### No 426 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1R5O_A Eukaryotic peptide chain release factor; TRANSLATION TERMINATION, PEPTIDE RELEASE, GTPASE; HET: GNP; 3.2A {Schizosaccharomyces pombe} SCOP: b.43.3.1, c.37.1.8, b.44.1.1
Probab=99.09 E-value=9.2e-14 Score=107.23 Aligned_cols=167 Identities=14% Similarity=0.085 Sum_probs=79.7 Template_Neff=10.600
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQF--PEVYV----------------------PT------VFENYVADIEVDGK 54 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~--~~~~~----------------------~t------~~~~~~~~~~~~~~ 54 (184)
..+.++|+++|..++|||||+++|..... ..... .. ..............
T Consensus 40 ~~~~~~v~vvG~~~sGKSTli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~t~~~~~~~~~~~ 119 (467)
T 1R5O_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSCCC----------------------------CCEEEET
T ss_pred CCCcEEEEEEecCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCchhHHHHHhcCCHHHHHhCCcceeeEEEeecC
Confidence 45678999999999999999999862211 00000 00 00000000011112
Q sequence1 55 QVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDS---L---ENIPEKWTPEVKHFCPNVP-IILVGNKKDLRND 127 (184)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-~~vv~nK~D~~~~ 127 (184)
...+.+||+||+.++...+...+..+|++++|+|...... + ....+. ...... ...| +++++||+|+...
T Consensus 120 ~~~i~liD~pG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~~~~~~~~~~~~-l~~~~~--~~~~~iivv~nK~D~~~~ 196 (467)
T 1R5O_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREH-AVLART--QGINHLVVVINKMDEPSV 196 (467)
T ss_dssp TEEEEEECCCC-----------TTSCSEEEEEEECSTTHHHHHTSSSCTHHHH-HHHHHH--TTCSSEEEEEECCSSTTT
T ss_pred CcEEEEEeCCCChhHHHHHHHHHhcCCEEEEEEECCCCcccccccCCCchHHH-HHHHHH--cCCCEEEEEEEcCCCCCC
Confidence 3467899999998887777777788999999999876431 0 111111 111111 1344 8999999998642
Q sequence1 128 EHTRRELAKMKQEPVKP-EEGRDMANRIGAFGYMECSAKTKDGVREVFE 175 (184)
Q Consensus 128 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 175 (184)
................. .....+.. .....++++|+.++.|+.+++.
T Consensus 197 ~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~i~vSa~~~~~i~~~~~ 244 (467)
T 1R5O_A 197 QWSEERYKECVDKLSMFLRRVAGYNS-KTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCCCT-TSSEEEEECBTTTTBTTSSCCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCCCC-CCCceEEEeeecccccccCCCc
Confidence 21111111100000000 00000000 0125678899999998877653
##### No 427 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6B8D_A Adenosylhomocysteinase (E.C.3.3.1.1, 1.8.1.7); Structural Genomics, Center for Structural; 1.78A {Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)}
Probab=99.09 E-value=9.3e-14 Score=105.63 Aligned_cols=119 Identities=15% Similarity=-0.038 Sum_probs=69.7 Template_Neff=10.100
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVY------------------VPT-VFENYVADIE-----VDGKQVELA 59 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~------------------~~t-~~~~~~~~~~-----~~~~~~~~~ 59 (184)
......+|+++|..++|||||++++......... .+. +......... .......+.
T Consensus 9 ~~~~~~~I~vvG~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 88 (408)
T 6B8D_A 9 PIERYRNIGISAHIDAGKTTTTERILFYTGVSHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMSQQFPQHRIN 88 (408)
T ss_dssp CGGGEEEEEEEECGGGCHHHHHHHHHHHTTSGGGCBC---------------------CCSEEEEEECCTTSCSCCEEEE
T ss_pred ccccCeEEEEEecCCCCccHHHHHHHHhhCCcceeeeecCCCceecchhHHHHhCceeeccceeeecccccccCCCceEE
Confidence 3466789999999999999999998644211000 000 0000000000 011246889
Q sequence1 60 LWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184)
Q Consensus 60 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184)
+||+||+.++...+..++..+|++++|+|+.+..... ... +...+.. ...|+++++||+|+..
T Consensus 89 liDtpG~~~~~~~~~~~l~~~D~iilvvd~~~~~~~~-~~~-~l~~~~~--~~~~~ivv~nk~D~~~ 151 (408)
T 6B8D_A 89 VIDTPGHVDFTVEVERSMRVLDGAVMVYCAVGGVQPQ-SET-VWRQANK--YEVPRIAFVNKMDRTG 151 (408)
T ss_dssp EECCC-----CHHHHHHHHHCSEEEEEEETTTBSCHH-HHH-HHHHHHH--TTCCEEEEEECTTSTT
T ss_pred EEeCCCCCCchHHHHHHHhhCCEEEEEEecCCCCchH-HHH-HHHHHHH--hCCCEEEEEeCCCCCC
Confidence 9999999888777777888999999999998643221 111 1221211 2578899999999865
##### No 428 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2XEX_B ELONGATION FACTOR G; GTPASE, TRANSLATION, BIOSYNTHETIC PROTEIN; 1.9A {STAPHYLOCOCCUS AUREUS}
Probab=99.09 E-value=9.6e-14 Score=112.15 Aligned_cols=160 Identities=13% Similarity=0.063 Sum_probs=92.9 Template_Neff=9.800
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-T----V-----------FENY-VADIEVDGKQVELALWDTAG 65 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~-t----~-----------~~~~-~~~~~~~~~~~~~~i~D~~g 65 (184)
+...+..+|+++|..++|||||++++........... . . .... ............+.+||+||
T Consensus 5 ~~~~~~~~I~iiG~~~~GKStli~~ll~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~liDtpG 84 (693)
T 2XEX_B 5 FSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPG 84 (693)
T ss_dssp SCSTTEEEEEEEECGGGTHHHHHHHHHHHTTTCCCCC----CGGGGTTTSCC--------CCEEEEEETTEEEEEECCCC
T ss_pred CChHhceEEEEEeCCCCChHHHHHHHHHHhCCCccceeecCCCccccchHHHHHHCcccccccEEeEeCCEEEEEEeCCC
Confidence 3456778999999999999999999875421110000 0 0 0000 00001111234789999999
Q sequence1 66 LEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPE 145 (184)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 145 (184)
+..+...+..++..+|++++|+|+.+....... ..+.. +.. ...|+++++||+|+...... .......
T Consensus 85 ~~~~~~~~~~~l~~~d~~ilvvD~~~~~~~~~~-~~~~~-~~~--~~~p~ivvinK~D~~~~~~~-~~~~~~~------- 152 (693)
T 2XEX_B 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWRQ-ATT--YGVPRIVFVNKMDKLGANFE-YSVSTLH------- 152 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHH-HHH--TTCCEEEEEECTTSTTCCHH-HHHHHHH-------
T ss_pred ccchHHHHHHHHHhcCEEEEEEECCCCCChHHH-HHHHH-HHH--hCCCEEEEEeCcccCCCChh-HHHHHHH-------
Confidence 988877777788899999999999874322221 22222 211 35789999999999764211 1100000
Q sequence1 146 EGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179 (184)
Q Consensus 146 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~ 179 (184)
..+ . ....++.+|+.++.++.++++.+..
T Consensus 153 --~~l-~--~~~~~~~~s~~~~~~~~~l~~~~~~ 181 (693)
T 2XEX_B 153 --DRL-Q--ANAAPIQLPIGAEDEFEAIIDLVEM 181 (693)
T ss_dssp --HHH-C--CCEEESEEEESCGGGCCEEEETTTT
T ss_pred --HHh-c--CCceeeeeccCCccceeeeEEhhhC
Confidence 000 0 1134566777777777766665543
##### No 429 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4H9G_A Elongation factor Tu-A (E.C.3.6.5.3); P-loop, GTPase, GTP Binding, tRNA; HET: SO4, GNP; 1.93A {Thermus thermophilus}
Probab=99.09 E-value=9.8e-14 Score=105.20 Aligned_cols=121 Identities=19% Similarity=0.122 Sum_probs=73.5 Template_Neff=10.700
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP----------TV-----F-ENYVADIEVDGKQVELALWDTAGL 66 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~----------t~-----~-~~~~~~~~~~~~~~~~~i~D~~g~ 66 (184)
+......+|+++|..++|||||+++|........... .. . ...............+.+||+||+
T Consensus 6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liD~pG~ 85 (405)
T 4H9G_A 6 VRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGH 85 (405)
T ss_dssp CCCSCEEEEEEECSTTSSHHHHHHHHHHHHHHHCTTCCCCCHHHHSCSHHHHHHTSCCSCEEEEEECSSCEEEEEECCCS
T ss_pred cCCCCcEEEEEEcCCCCCHHHHHHHHHHHHhccCCCceecchhhhcCCHHHHhCCeeeEeEEEEEEcCCcEEEEEeCCCC
Confidence 4456788999999999999999999875422110000 00 0 000000111122346789999999
Q sequence1 67 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV-GNKKDLRND 127 (184)
Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv-~nK~D~~~~ 127 (184)
..+...+..++..+|++++|+|+++... ....+ +...+.. ...|.++| +||+|+...
T Consensus 86 ~~~~~~~~~~~~~~d~~ilvvd~~~~~~-~~~~~-~l~~~~~--~~~~~iiv~inK~D~~~~ 143 (405)
T 4H9G_A 86 ADYIKNMITGAAQMDGAILVVSAADGPM-PQTRE-HILLARQ--VGVPYIVVFMNKVDMVDD 143 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCSC-HHHHH-HHHHHHH--TTCCCEEEEEECGGGCCC
T ss_pred hHHHHHHHHHHccCCEEEEEEECCCCCC-chHHH-HHHHHHH--hCCCEEEEEEEcccCCCC
Confidence 8887667777788999999999986421 11212 2222222 23555555 799998763
##### No 430 #####
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>2QNR_A Septin-2; septin, Structural Genomics Consortium, SGC; HET: MSE, GDP; 2.6A {Homo sapiens}
Probab=99.09 E-value=9.8e-14 Score=101.26 Aligned_cols=120 Identities=20% Similarity=0.186 Sum_probs=59.3 Template_Neff=10.600
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP---------TVFEN-YVADIEVDGKQVELALWDTAGLED----- 68 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~---------t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~----- 68 (184)
.....++|+++|+.|+|||||++++....+...... +.... ....+..++..+.+.+||+||...
T Consensus 14 ~~~~~~~I~vvG~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~DtpG~~~~~~~~ 93 (301)
T 2QNR_A 14 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 93 (301)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---------
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHhCCccCccccCCCccceeeeeEEEEEEEEEEeeCCEEEEEEEEecCCCCccccch
Confidence 345678999999999999999999987654321110 00000 011111223345789999999432
Q sequence1 69 --YDRL-------RPLSYP-------------DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184)
Q Consensus 69 --~~~~-------~~~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184)
+..+ +..++. .+++++++++..... +......+...+ ....|+++|+||+|+..
T Consensus 94 ~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vi~~~~~~-~~~~~~~~l~~l---~~~~~vi~V~tK~D~~~ 169 (301)
T 2QNR_A 94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG-LKPLDVAFMKAI---HNKVNIVPVIAKADTLT 169 (301)
T ss_dssp --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSS-CCHHHHHHHHHH---TTTSCEEEEECCGGGSC
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCccccCCCceeEEEEEeCCCCCC-CCHHHHHHHHHH---hccCcEEEEEecccCCC
Confidence 2111 111111 266888887766422 111111111111 34688999999999976
Q sequence1 127 D 127 (184)
Q Consensus 127 ~ 127 (184)
.
T Consensus 170 ~ 170 (301)
T 2QNR_A 170 L 170 (301)
T ss_dssp H
T ss_pred H
Confidence 4
##### No 431 #####
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>2C78_A ELONGATION FACTOR TU-A (E.C.3.1.5.1); HYDROLASE, GTPASE, TRANSLATION ELONGATION FACTOR; HET: GNP, PUL; 1.4A {THERMUS THERMOPHILUS} SCOP: c.37.1.8, b.44.1.1, b.43.3.1
Probab=99.09 E-value=9.9e-14 Score=105.14 Aligned_cols=121 Identities=19% Similarity=0.122 Sum_probs=71.4 Template_Neff=10.800
Q sequence1 3 MGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP---------------TVF-ENYVADIEVDGKQVELALWDTAGL 66 (184)
Q Consensus 3 ~~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~---------------t~~-~~~~~~~~~~~~~~~~~i~D~~g~ 66 (184)
+.....++|+++|..++|||||++++........... ... ...............+.+||+||+
T Consensus 6 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liD~pG~ 85 (405)
T 2C78_A 6 VRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGH 85 (405)
T ss_dssp ---CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCS
T ss_pred cCCCCcEEEEEEcCCCCCHHHHHHHHHHHHhccCCCceecchhhhccCHHHHhcCeeeEEEEEEEEcCCeEEEEeeCCCC
Confidence 3456788999999999999999999875422110000 000 000000111122346789999999
Q sequence1 67 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV-GNKKDLRND 127 (184)
Q Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv-~nK~D~~~~ 127 (184)
..+...+..+...+|++++|+|+++... ....+ +...+.. ...|.+++ +||+|+...
T Consensus 86 ~~~~~~~~~~~~~~d~~ilvid~~~~~~-~~~~~-~l~~~~~--~~~~~iiv~~nK~D~~~~ 143 (405)
T 2C78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPM-PQTRE-HILLARQ--VGVPYIVVFMNKVDMVDD 143 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHH-HHHHHHH--TTCCCEEEEEECGGGCCC
T ss_pred HHHHHHHHHhhccCCEEEEEEeCCCCCC-hhHHH-HHHHHHH--hCCCEEEEEEEcccCCCC
Confidence 8887777777789999999999886421 11211 2222221 13455544 799998763
##### No 432 #####
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>6UPQ_A Septin-2, Septin-11; cytoskeleton protein, septin, STRUCTURAL PROTEIN; HET: GTP, GDP; 1.86A {Homo sapiens}
Probab=99.09 E-value=9.9e-14 Score=99.70 Aligned_cols=118 Identities=19% Similarity=0.208 Sum_probs=65.6 Template_Neff=11.100
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFP-EVYVPTV-------FENY--VADIEVDGKQVELALWDTAGLEDY------- 69 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~-~~~~~t~-------~~~~--~~~~~~~~~~~~~~i~D~~g~~~~------- 69 (184)
..++|+++|..|+|||||++++...... ....++. .... ...+..++....+.+||+||....
T Consensus 2 ~~~~i~vvG~~g~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~DtpG~~~~~~~~~~~ 81 (274)
T 6UPQ_A 2 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 81 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTCCCCTTCCCCCHHHHTTCCCCCEEEEEEEEETTEEEEEEEEECTTTTTSSBCTTTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCccCCcccCCCccccccceEEEEEEEEEEEeCCEEEEEEEEecCCCCccccchHHH
Confidence 3578999999999999999998865322 1111110 0000 111122233568899999994321
Q sequence1 70 DRL-------RPLSYP-------------DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128 (184)
Q Consensus 70 ~~~-------~~~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~ 128 (184)
... +..++. .+++++++++..... +......+...+ ....|+++|+||+|+....
T Consensus 82 ~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~-~~~~~~~~~~~l---~~~~~vi~v~tK~D~~~~~ 156 (274)
T 6UPQ_A 82 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG-LKPLDVAFMKAI---HNKVNIVPVIAKADTLTLK 156 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCGGGCCCCCCCEEEEEECSSSSS-CCHHHHHHHHHH---TTTSCEEEEECCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCccccCCCCCeeEEEEEeCCCCCC-CCHHHHHHHHHH---cccCCEEEEEeccCCCCHH
Confidence 111 111111 267888887776432 111111111112 3468899999999997643
##### No 433 #####
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>1H65_A CHLOROPLAST OUTER ENVELOPE PROTEIN OEP34; GTPASE, CHLOROPLAST, TRANSLOCON; HET: GDP; 2.0A {PISUM SATIVUM} SCOP: c.37.1.8
Probab=99.08 E-value=1.1e-13 Score=99.71 Aligned_cols=121 Identities=12% Similarity=0.055 Sum_probs=71.5 Template_Neff=10.200
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSY-------- 77 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~-------- 77 (184)
....+|+++|.+|+|||++++.+.+...........................+.+||+||..........+.
T Consensus 37 ~~~~~i~vvG~~g~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~~~~~~ 116 (270)
T 1H65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHhCCCceecCCCCCcCCceEEEEEeeCCEEEEEEECCCCCCCCcchHHHHHHHHHHHc
Confidence 566899999999999999999998765432211111111111111222345788999999754432222111
Q sequence1 78 -PDTDVILMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRND 127 (184)
Q Consensus 78 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~vv~nK~D~~~~ 127 (184)
..+|++++|+++++....... ..+...+... ....|+++|+||.|+...
T Consensus 117 ~~~~d~il~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 169 (270)
T 1H65_A 117 DKTIDVLLYVDRLDAYRVDNLD-KLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCCCCCHHH-HHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred CCCCCEEEEEEeCCccCCCHHH-HHHHHHHHHHHChhhhcceEEEEeccccCCC
Confidence 568999999998763211111 1222222111 124789999999999764
##### No 434 #####
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>5CK3_B SRX domain, Putative signal recognition; GTPase, Longin domain, regulator complex; HET: GOL, GTP; 3.2A {Chaetomium thermophilum}
Probab=99.07 E-value=1.2e-13 Score=101.21 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=21.2 Template_Neff=10.200
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKD 31 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~ 31 (184)
...+..+|+++|+.|+|||||++.|...
T Consensus 6 ~~~~~~~I~vvG~~gsGKSTlin~L~~~ 33 (307)
T 5CK3_B 6 QYTTLPSVLLIGPSGAGKTALLTLFERG 33 (307)
T ss_dssp -----CEEEEECCTTSCHHHHHHHHHHT
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3456789999999999999999999853
##### No 435 #####
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>6NOT_B Elongation factor G; National Institute of Allergy and; 2.4A {Rickettsia prowazekii (strain Madrid E)}
Probab=99.07 E-value=1.3e-13 Score=111.68 Aligned_cols=118 Identities=17% Similarity=-0.023 Sum_probs=70.9 Template_Neff=9.500
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV----------------F-ENYVADIEVDGKQVELALWDTAGLE 67 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~----------------~-~~~~~~~~~~~~~~~~~i~D~~g~~ 67 (184)
.....+|+++|..++|||||+++|..........+.. . ...............+.+||+||+.
T Consensus 15 ~~~ir~I~iiG~~~~GKTtLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~i~liDtpG~~ 94 (707)
T 6NOT_B 15 LEQIRNIGICAHIDAGKTTTTERILYYTGKSHKIGEVHEGGATMDWMEQEQERGITITSAATTCRWQDKVINIIDTPGHV 94 (707)
T ss_dssp GGGEEEEEEECCCC----CHHHHHHHHHHC---------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred HHhceEEEEEecCCCChHHHHHHHHHHhCCCccceeecCCcceecchHHHHHhCeeeeeceEEeEeCCEEEEEEeCCCcc
Confidence 4566799999999999999999998543211100000 0 0000011112223578999999998
Q sequence1 68 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184)
.+...+..++..+|++++|+|+++.... .. ..+...... ...|+++++||.|+..
T Consensus 95 ~~~~~~~~~l~~~D~~ilVvd~~~~~~~-~~-~~~l~~~~~--~~~p~iiv~nK~D~~~ 149 (707)
T 6NOT_B 95 DFTIEVERSLRVLDGAVAVFDGVAGVEP-QS-ETVWRQADK--YNVPRMCFVNKMDRMG 149 (707)
T ss_dssp BCCHHHHHHHHHCSEEEEEEETTTBSCH-HH-HHHHHHHHT--TTCCEEEEEECTTSTT
T ss_pred chHHHHHHHHHhCCEEEEEEEcCCCCCh-hH-HHHHHHHHH--hCCCEEEEEeCCCcCC
Confidence 8887788888999999999999863211 11 122222211 3578899999999865
##### No 436 #####
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>4H1V_A Dynamin-1-like protein (E.C.3.6.5.5); GTPase domain, GTPase, Cytosol, HYDROLASE; HET: GNP; 2.3A {Homo sapiens}
Probab=99.06 E-value=1.4e-13 Score=102.93 Aligned_cols=69 Identities=20% Similarity=0.196 Sum_probs=45.6 Template_Neff=11.000
Q sequence1 57 ELALWDTAGLED-------------YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 123 (184)
Q Consensus 57 ~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D 123 (184)
.+.+||+||... +...+..++..+|++++|++.+...........+...+. ....|+++|+||+|
T Consensus 141 ~l~lvD~PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvv~~~~~~~~~~~~~~~~~~~~--~~~~~viiv~tk~D 218 (369)
T 4H1V_A 141 NLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKISREVD--PDGRRTLAVITKLD 218 (369)
T ss_dssp SEEEEECCCBCSSCGGGSSCTTHHHHHHHHHHHHTCTTEEEEEEEETTSCGGGCHHHHHHTTTS--SSBSSEEEEEECGG
T ss_pred CEEEEECCCcccCCCCCCcchHHHHHHHHHHHHhcCCCEEEEEEEcCCCChhhhHHHHHHHHHC--CCCCeEEEEEEehh
Confidence 788999999764 344555667788999999988764322221111222221 13578999999999
Q sequence1 124 LRND 127 (184)
Q Consensus 124 ~~~~ 127 (184)
....
T Consensus 219 ~~~~ 222 (369)
T 4H1V_A 219 LMDA 222 (369)
T ss_dssp GCCT
T ss_pred hcCC
Confidence 8764
##### No 437 #####
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>5G06_P EXOSOME COMPLEX COMPONENT RRP45, EXOSOME; HYDROLASE, RNA DECAY, EXOSOME, RNA; 4.2A {SACCHAROMYCES CEREVISIAE}
Probab=99.06 E-value=1.5e-13 Score=111.53 Aligned_cols=164 Identities=20% Similarity=0.206 Sum_probs=0.0 Template_Neff=7.800
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEV-------------YVPTV-----------------FENY-VADIEVD-- 52 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~-------------~~~t~-----------------~~~~-~~~~~~~-- 52 (184)
.+..+|+++|..++|||||+++|+....... ..+.. .... .....+.
T Consensus 265 ~~~~~IvViG~vdsGKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~er~~gvti~~~~~~~~~~ 344 (747)
T 5G06_P 265 PLNLTCLFLGDTNAGKSTLLGHLLYDLNEISMSSMRELQKKSSNLDPSSSNSFKVILDNTKTERENGFSMFKKVIQVEND 344 (747)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccCCCCHHHHHHHHHHHHHhCCCCcchhhHhhcCCHHHHhhCeeEEEEEEEEeec
Confidence 5678999999999999999999886532200 00000 0000 0000001
Q sequence1 53 --GKQVELALWDTAGLEDYD---RLRPLSYPDTDVILMCFSIDSP---DSLENIP---EKWTPEVKH----FCPNVPIIL 117 (184)
Q Consensus 53 --~~~~~~~i~D~~g~~~~~---~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~---~~~~~~~~~----~~~~~~~~v 117 (184)
.....+.+||+||+..+. ..+..++..+|++++|+|++.. .++.... ..+...+.. .....|+++
T Consensus 345 ~~~~~~~~tiiDtPGh~df~~~~~i~~~~~~~aD~aILVIDas~~~~e~~~~~~~~qt~e~l~l~~~l~~~~~~~~piIV 424 (747)
T 5G06_P 345 LLPPSSTLTLIDTPGSIKYFNKETLNSILTFDPEVYVLVIDCNYDSWEKSLDGPNNQIYEILKVISYLNKNSACKKHLII 424 (747)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCceEEEEECCCCHHHhhhhhhchHHHhhCCEEEEEEECCCCCcccccCCChHHHHHHHHHHHHHhhhccCCCCEEE
Confidence 234578999999988765 2344445789999999999865 2222111 111111111 113688999
Q sequence1 118 VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD-MANRIGAFGYMECSAKTKDGVREV 173 (184)
Q Consensus 118 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~i~~~ 173 (184)
++||+|+...... ........ .. ..... +.-......++++|+.+|+|+..+
T Consensus 425 vvNK~Dl~~~~~~--~~~~i~~e-l~-~~L~~~~g~~~~~i~~ipvSal~G~ni~~~ 477 (747)
T 5G06_P 425 LLNKADLISWDKH--RLEMIQSE-LN-YVLKENFQWTDAEFQFIPCSGLLGSNLNKT 477 (747)
T ss_dssp ---------------------------------------------------------
T ss_pred EEeCCcCCCCCHH--HHHHHHHH-HH-HHHHHHhCCCCCCCcEEecccCCCCchhhh
Confidence 9999999763211 11110000 00 00000 000011257899999999998764
##### No 438 #####
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>3J25_A Tetracycline resistance protein tetM; antibiotic resistance, TRANSLATION; HET: GCP; 7.2A {Enterococcus faecalis}
Probab=99.06 E-value=1.5e-13 Score=110.01 Aligned_cols=116 Identities=15% Similarity=0.035 Sum_probs=73.1 Template_Neff=9.900
Q sequence1 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-----TVFENY------------VADIEVDGKQVELALWDTAGLEDYD 70 (184)
Q Consensus 8 ~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~-----t~~~~~------------~~~~~~~~~~~~~~i~D~~g~~~~~ 70 (184)
..+|+++|..++|||||++++........... ...... ............+.+||+||+..+.
T Consensus 2 ~~~I~iiG~~~~GKTtli~~ll~~~~~~~~~~~~~~~~~~~~~~~~e~~~~iti~~~~~~~~~~~~~i~liDtpG~~~~~ 81 (638)
T 3J25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHhhcCCCccccCCCCCceeeccHHHHHhhCCcceeeeEEeeeCCeEEEEEeCCCchHHH
Confidence 46899999999999999999875532211000 000000 0000111123578999999998887
Q sequence1 71 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 127 (184)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~ 127 (184)
..+...+..+|++++|+|+.+.. ...... +...+.. ...|+++++||+|+...
T Consensus 82 ~~~~~~l~~~D~~llvvd~~~~~-~~~~~~-~l~~~~~--~~~p~iiv~nK~D~~~~ 134 (638)
T 3J25_A 82 AEVYRSLSVLDGAILLISAKDGV-QAQTRI-LFHALRK--MGIPTIFFINKIDQNGI 134 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTT-CSHHHH-HHHHHHH--HTCSCEECCEECCSSSC
T ss_pred HHHHHHHhcCCEEEEEEecCCCc-cHHHHH-HHHHHHH--cCCCEEEEEeCcCCCCC
Confidence 77777788899999999998732 122222 2222221 25789999999998753
##### No 439 #####
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>3MCA_A Elongation factor 1 alpha-like protein; protein protein complex, Translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.06 E-value=1.6e-13 Score=109.04 Aligned_cols=119 Identities=15% Similarity=0.055 Sum_probs=60.0 Template_Neff=8.600
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYV------------------------P-----TVFEN-YVADIEVDGKQ 55 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~------------------------~-----t~~~~-~~~~~~~~~~~ 55 (184)
...++|+++|..++|||||+++|+......... . ..... ...........
T Consensus 175 ~~~~~I~viG~~~sGKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 254 (592)
T 3MCA_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCcEEEEEEcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCChhHHHHhcCCHHHHHhCcceeeeeeEEEeCC
Confidence 455799999999999999999987432100000 0 00000 00000111223
Q sequence1 56 VELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD---SLE---NIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184)
Q Consensus 56 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184)
..+.+||+||+..+...+...+..+|++++|+|+.... ++. ...+.+ ...... ...++++++||+|+..
T Consensus 255 ~~i~liDtPG~~~~~~~~~~~~~~aD~~IlVVda~~g~~e~g~~~~~qt~e~l-~l~~~l-~v~~iivviNK~D~~~ 329 (592)
T 3MCA_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA-YLLRAL-GISEIVVSVNKLDLMS 329 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH-HHHHHS-SCCCEEEEEECGGGGT
T ss_pred eEEEEEeCCCchHHHHHHHHHHhcCCEEEEEEeCCCCccccCCcccchHHHHH-HHHHHc-CCCEEEEEEeCcccCC
Confidence 46789999999888777777778999999999998642 121 111111 111111 2234888999999875
##### No 440 #####
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>1H65_B CHLOROPLAST OUTER ENVELOPE PROTEIN OEP34; GTPASE, CHLOROPLAST, TRANSLOCON; HET: MSE, GDP; 2.0A {PISUM SATIVUM} SCOP: c.37.1.8
Probab=99.05 E-value=1.7e-13 Score=98.67 Aligned_cols=121 Identities=12% Similarity=0.055 Sum_probs=71.5 Template_Neff=10.200
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSY-------- 77 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~-------- 77 (184)
....+|+++|..|+|||++++.+.+...........................+.+||+||............
T Consensus 37 ~~~~~i~vvG~~gsGKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~ 116 (270)
T 1H65_B 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESSSSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceecCCCCCcCCceEEEEEeeCCEEEEEEECCCCCCCCcccHHHHHHHHHHHc
Confidence 566899999999999999999998765432211111111111111222345789999999764432222222
Q sequence1 78 -PDTDVILMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRND 127 (184)
Q Consensus 78 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~vv~nK~D~~~~ 127 (184)
..+|++++|+++++....... ..+...+... ....|+++|+||.|+...
T Consensus 117 ~~~~d~il~v~d~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 169 (270)
T 1H65_B 117 DKTIDVLLYVDRLDAYRVDNLD-KLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TEEESEEEEEEESSCCCCCHHH-HHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCccCCCHHH-HHHHHHHHHHHChhhhcceEEEEeccccCCC
Confidence 578899999998863211111 1222222111 123789999999999764
##### No 441 #####
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>6NOT_A Elongation factor G; National Institute of Allergy and; 2.4A {Rickettsia prowazekii (strain Madrid E)}
Probab=99.05 E-value=1.7e-13 Score=110.95 Aligned_cols=118 Identities=17% Similarity=-0.023 Sum_probs=71.7 Template_Neff=9.500
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV----------------F-ENYVADIEVDGKQVELALWDTAGLE 67 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~----------------~-~~~~~~~~~~~~~~~~~i~D~~g~~ 67 (184)
.....+|+++|..++|||||+++|..........+.. . ...............+.+||+||+.
T Consensus 15 ~~~ir~I~ilG~~~~GKTtLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~i~liDtpG~~ 94 (707)
T 6NOT_A 15 LEQIRNIGICAHIDAGKTTTTERILYYTGKSHKIGEVHEGGATMDWMEQEQERGITITSAATTCRWQDKVINIIDTPGHV 94 (707)
T ss_dssp GGGEEEEEEECCCC---CCHHHHHHHHHHC---------------------------CCSEEEEEETTEEEEEECCCSSS
T ss_pred HHhceEEEEEcCCCCCHHHHHHHHHhhcCCCcccccccCCCeeeccCHHHHhcCeEEEEeeeeeecCCeEEEEEECCCCC
Confidence 4556799999999999999999998542211100000 0 0000011122234678999999998
Q sequence1 68 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184)
.+...+..++..+|++++|+|+++.... .. ..+...... ...|+++++||.|+..
T Consensus 95 ~~~~~~~~~l~~~D~~ilVvd~~~~~~~-~~-~~~l~~~~~--~~~p~iiv~nK~D~~~ 149 (707)
T 6NOT_A 95 DFTIEVERSLRVLDGAVAVFDGVAGVEP-QS-ETVWRQADK--YNVPRMCFVNKMDRMG 149 (707)
T ss_dssp SSSHHHHHHHHHCSEEEEEEETTTBSCH-HH-HHHHHHHHH--TTCCEEEEEECTTSTT
T ss_pred ChHHHHHHHHHhCCEEEEEEECCCCCCH-HH-HHHHHHHHH--cCCCEEEEEeCCCCCC
Confidence 8877787888899999999999873211 11 112222211 3578899999999865
##### No 442 #####
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>1XB2_A Mitochondrial Elongation factors Tu and; Protein-protein complex, TRANSLATION; 2.2A {Bos taurus} SCOP: b.43.3.1, b.44.1.1, c.37.1.8
Probab=99.05 E-value=1.7e-13 Score=104.04 Aligned_cols=119 Identities=17% Similarity=0.102 Sum_probs=70.8 Template_Neff=10.600
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPE----------------VYVPTVFENYVADIEVDGKQVELALWDTAGLE 67 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~ 67 (184)
......+|+++|..++|||||+++|....... ......... ............+.+||+||++
T Consensus 10 ~~~~~~~i~v~G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~t~~-~~~~~~~~~~~~i~liD~pG~~ 88 (409)
T 1XB2_A 10 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITIN-AAHVEYSTAARHYAHTDCPGHA 88 (409)
T ss_dssp ---CEEEEEEESCGGGTHHHHHHHHHHHTTC-----------------------------CEEEECSSCEEEEECCSCHH
T ss_pred cCCCceEEEEEcCCCCCHHHHHHHHHHHHHcCCCceeeeHHHHhcCHHHHhcCceeE-eeEEEEEcCCcEEEEEeCCCCH
Confidence 34677899999999999999999987631100 000000000 0001111122467899999998
Q sequence1 68 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRND 127 (184)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~~vv~nK~D~~~~ 127 (184)
.+...+......+|++++|+|.+.... ... ..+...+.. ...| +++++||+|+...
T Consensus 89 ~~~~~~~~~~~~~d~~ilvvd~~~~~~-~~~-~~~l~~~~~--~~~~~~ivvinK~D~~~~ 145 (409)
T 1XB2_A 89 DYVKNMITGTAPLDGCILVVAANDGPM-PQT-REHLLLARQ--IGVEHVVVYVNKADAVQD 145 (409)
T ss_dssp HHHHHHHHTSSCCSEEEEEEETTTCSC-TTH-HHHHHHHHH--TTCCCEEEEEECCCSCCC
T ss_pred HHHHHHHhcccCCCEEEEEEeCCCCCC-hhH-HHHHHHHHH--hCCCEEEEEEccccCCCh
Confidence 877666667778999999999876421 111 112222221 2466 8899999998763
##### No 443 #####
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>5HCI_E GPN-loop GTPase 1 (E.C.3.6.5.-); GPN-loop GTPase, Chaperone, Assembly, RNA; HET: GDP, GOL; 2.3A {Saccharomyces cerevisiae}
Probab=99.05 E-value=1.8e-13 Score=97.21 Aligned_cols=128 Identities=14% Similarity=0.136 Sum_probs=67.5 Template_Neff=11.800
Q sequence1 55 QVELALWDTAGLEDYDRL------RPLSYPD--TDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLR 125 (184)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~------~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~ 125 (184)
..++.++|+||....... ...++.. +|+++++++.............+...+... ....|+++|+||.|+.
T Consensus 98 ~~~~~iiD~pg~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vV~nk~D~~ 177 (261)
T 5HCI_E 98 KFQNCIIDTPGQIECFVWSASGAIITESFASSFPTVIAYIVDTPRNSSPTTFMSNMLYACSILYKTKLPMIVVFNKTDVC 177 (261)
T ss_dssp TCSEEEEECCSSHHHHHSSHHHHHHHHHHHHHSCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHHHHTCCEEEEEECTTTS
T ss_pred ceeEEEEeCCCCchhhcccchHHHHHHHHhhcCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEhHHhC
Confidence 356889999997543221 1112333 788999988876432221112222222111 1257889999999998
Q sequence1 126 NDEHTRRELAKM---KQEP----------VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 126 ~~~~~~~~~~~~---~~~~----------~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
............ .... ........+........++.+|+.++.|+.++++++.+.+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~l~~~~~ 247 (261)
T 5HCI_E 178 KADFAKEWMTDFESFQAAIKEDQDGYMSSLVNSMSLMLEEFYSQLDVVGVSSFTGDGFDEFMQCVDKKVD 247 (261)
T ss_dssp CSHHHHHHHHCHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHHCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ChhHhhHHhhchHHHHHHHHhCCCcchHHHHHHHHHHHHHhhccceEEEeecCCCcCHHHHHHHHHHHHH
Confidence 643211111100 0000 00000000111112357889999999999999998877654
##### No 444 #####
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>5HCN_A GPN-loop GTPase 1 (E.C.3.6.5.-); GPN-loop GTPase, Chaperone, Assembly, RNA; HET: DAO, GCP, GOL; 2.2A {Saccharomyces cerevisiae}
Probab=99.05 E-value=1.8e-13 Score=97.21 Aligned_cols=128 Identities=14% Similarity=0.136 Sum_probs=67.5 Template_Neff=11.800
Q sequence1 55 QVELALWDTAGLEDYDRL------RPLSYPD--TDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLR 125 (184)
Q Consensus 55 ~~~~~i~D~~g~~~~~~~------~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~vv~nK~D~~ 125 (184)
..++.++|+||....... ...++.. +|+++++++.............+...+... ....|+++|+||.|+.
T Consensus 98 ~~~~~iiD~pg~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vV~nk~D~~ 177 (261)
T 5HCN_A 98 KFQNCIIDTPGQIECFVWSASGAIITESFASSFPTVIAYIVDTPRNSSPTTFMSNMLYACSILYKTKLPMIVVFNKTDVC 177 (261)
T ss_dssp TCSEEEEECCSCSHHHHTSHHHHHHHHHHHTTSCEEEEEEECGGGTTSHHHHHHHHHHHHHHHHHHCCCEEEEECCGGGS
T ss_pred ceeEEEEeCCCCchhhcccchHHHHHHHHhhcCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEhHHhC
Confidence 356889999997543221 1112333 788999988876432221112222222111 1257889999999998
Q sequence1 126 NDEHTRRELAKM---KQEP----------VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182 (184)
Q Consensus 126 ~~~~~~~~~~~~---~~~~----------~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~ 182 (184)
............ .... ........+........++.+|+.++.|+.++++++.+.+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~l~~~~~ 247 (261)
T 5HCN_A 178 KADFAKEWMTDFESFQAAIKEDQDGYMSSLVNSMSLMLEEFYSQLDVVGVSSFTGDGFDEFMQCVDKKVD 247 (261)
T ss_dssp CTTHHHHHHHHHHHHHHHHTCSSTTSCSHHHHHHHHHHHHHHHHEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ChhHhhHHhhchHHHHHHHHhCCCcchHHHHHHHHHHHHHhhccceEEEeecCCCcCHHHHHHHHHHHHH
Confidence 643211111100 0000 00000000111112357889999999999999998877654
##### No 445 #####
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>5IZM_A Selenocysteine-specific elongation factor; elongation factor, selenocysteine, selenocysteine tRNA; HET: MSE, GNP; 3.4A {Homo sapiens}
Probab=99.02 E-value=2.9e-13 Score=108.05 Aligned_cols=168 Identities=17% Similarity=0.174 Sum_probs=94.0 Template_Neff=8.800
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFP-------EVYVPTVFENY-VADIEV-----------------------D 52 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~-------~~~~~t~~~~~-~~~~~~-----------------------~ 52 (184)
.....++|+++|..++|||||+++|...... ........... ...+.. .
T Consensus 23 ~~~~~~~V~vlG~~~sGKSTLi~~L~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (616)
T 5IZM_A 23 GRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPG 102 (616)
T ss_dssp CCEEEEEEEEEESTTSSHHHHHHHHHHCC---------------CCCSCEEEEEEEECCGGGGCC---------------
T ss_pred CCCccEEEEEEcCCCCCHHHHHHHHhcccchhhhhcChhHHhcCceeEeeeeeeecCCChHHhccChhhcCCCCCCCCCC
Confidence 3467789999999999999999999754211 00000000000 000000 1
Q sequence1 53 GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRR 132 (184)
Q Consensus 53 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~ 132 (184)
.....+.+||+||++.+...+......+|++++|+|++.....+.. +.+.. .. ....|+++++||+|+........
T Consensus 103 ~~~~~itliD~PGh~~~~~~~i~~~~~~D~~IlVida~~g~~~qt~-e~l~~-~~--~~~~~iIVvlnK~Dl~~~~~~~~ 178 (616)
T 5IZM_A 103 EPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSA-ECLVI-GQ--IACQKLVVVLNKIDLLPEGKRQA 178 (616)
T ss_dssp -CEEEEEEEECCCCGGGHHHHHHHTTSCSEEEEEEESSSCSCHHHH-HHHHH-HH--HHCSEEEEEEECCSSSCTTTHHH
T ss_pred CCceEEEEEeCCCCHHHHHHHHHHHhhCCEEEEEEECCCCCChHHH-HHHHH-HH--HhCCEEEEEEecccCCChHHHHH
Confidence 1235789999999988766666677789999999998864322211 11211 11 12568999999999876432111
Q sequence1 133 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK----------DGVREVFEMATR 179 (184)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~----------~~i~~~~~~~~~ 179 (184)
............ ... .......++++|+..+ .++.++++++..
T Consensus 179 ~~~~i~~~l~~~--l~~--~~~~~~~iv~vSa~~g~~~~~~~~~~~gi~~L~~~L~~ 231 (616)
T 5IZM_A 179 AIDKMTKKMQKT--LEN--TKFRGAPIIPVAAKPGGPEAPETEAPQGIPELIELLTS 231 (616)
T ss_dssp HHHHHHHHHHHH--HHT--SSCTTCCEEECBSCSCC-------CCBSHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHc--cCCCCCCEEEEecCCCCCCCCcccCCcCHHHHHHHHHh
Confidence 111111100000 000 0111256788999988 677777776654
##### No 446 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>1D2E_D ELONGATION FACTOR TU (EF-TU); G-PROTEIN, BETA-BARREL, RNA BINDING PROTEIN; HET: GDP; 1.94A {Bos taurus} SCOP: c.37.1.8, b.43.3.1, b.44.1.1
Probab=99.02 E-value=3.1e-13 Score=102.31 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=70.9 Template_Neff=10.600
Q sequence1 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPE----------------VYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD 70 (184)
Q Consensus 7 ~~~~i~i~G~~~~GKtsli~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 70 (184)
+..+|+++|..++|||||+++|....... ...... ...............+.+||+||+..+.
T Consensus 2 ~~~~i~v~G~~~sGKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~liD~pG~~~~~ 80 (397)
T 1D2E_D 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGI-TINAAHVEYSTAARHYAHTDCPGHADYV 80 (397)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHHSSCCCCCHHHHHTCCEEEETTE-EEECEEEEEEETTEEEEEEECSSHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHcCCCceeeeHHHHhcCHHHHHcCc-eeEEeEEEEEcCCcEEEEEeCCCChHHH
Confidence 46789999999999999999987631100 000000 0000001111223467899999998877
Q sequence1 71 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRND 127 (184)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~~vv~nK~D~~~~ 127 (184)
..+......+|++++|+|..+.. .... ..+...+.. ...| +++++||+|+...
T Consensus 81 ~~~~~~~~~~d~~ilvvd~~~~~-~~~~-~~~l~~~~~--~~~~~iivvvnK~D~~~~ 134 (397)
T 1D2E_D 81 KNMITGTAPLDGCILVVAANDGP-MPQT-REHLLLARQ--IGVEHVVVYVNKADAVQD 134 (397)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCS-CHHH-HHHHHHHHH--TTCCCEEEEEECTTTCCC
T ss_pred hHHHHhhcCCCEEEEEEeCCCCC-ChhH-HHHHHHHHH--hCCCEEEEEEecccCCCh
Confidence 66666778899999999987642 1111 112222221 2466 8899999998753
##### No 447 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>5TV2_A Ornithine aminotransferase, mitochondrial (E.C.2.6.1.13); GTP-binding domain, domain II, Structural; 1.6A {Vibrio vulnificus}
Probab=99.01 E-value=3.2e-13 Score=102.33 Aligned_cols=119 Identities=17% Similarity=0.056 Sum_probs=62.1 Template_Neff=11.000
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP--------------------TV---FENY-VADIEVDGKQVELA 59 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~--------------------t~---~~~~-~~~~~~~~~~~~~~ 59 (184)
......+|+++|..++|||||++++..........+ +. .... ............+.
T Consensus 6 ~~~~~~~i~iiG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (405)
T 5TV2_A 6 PIERYRNIGICAHVDAGKTTTTERILFYTGLSHKIGEVHDGAATMDWMEQEQERGITITSAATTTFWRGMEAQFQDHRVN 85 (405)
T ss_dssp CGGGEEEEEEEC-----CHHHHHHHHHHHHHHC-------------------------CCSEEEEEECCTTSCSCCEEEE
T ss_pred chhhceEEEEEecCCCCchHHHHHHHHHcCCccccccccCCceeeechHHHHHhCeEEeccceeeeeccchhhhcCcEEE
Confidence 345678999999999999999999874321100000 00 0000 00000011235789
Q sequence1 60 LWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184)
Q Consensus 60 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184)
+||+||+..+...+..++..+|++++|+|.++.... .....+ .... ....|+++++||+|+..
T Consensus 86 l~DtpG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~~-~~~~~l-~~~~--~~~~~~ivv~nK~D~~~ 148 (405)
T 5TV2_A 86 IIDTPGHVDFTIEVERSLRVLDGAVVVFCGSSGVEP-QSETVW-RQAD--KYHVPRMVFVNKMDRAG 148 (405)
T ss_dssp EECCC-------CHHHHHHHCSEEEEEEETTTCC----CHHHH-HHHH--HTTCCEEEEEECTTSTT
T ss_pred EEeCCCCcchHHHHHHHHhhCCEEEEEEEcCCCCCh-hHHHHH-HHHH--HhCCCEEEEEeCcccCC
Confidence 999999988777777778889999999998863221 111112 2121 13578899999999865
##### No 448 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>4ZCI_A GTP-binding protein TypA/BipA; BipA, GTPase, Nucleotide, GTP-BINDING PROTEIN; HET: NCO; 2.627A {Escherichia coli (strain K12)}
Probab=99.01 E-value=3.5e-13 Score=107.78 Aligned_cols=117 Identities=15% Similarity=0.043 Sum_probs=73.3 Template_Neff=8.300
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-T---V----------FEN-YVADIEVDGKQVELALWDTAGLEDYD 70 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~-t---~----------~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~ 70 (184)
....+|+++|..++|||||+++|+.......... . . ... .............+.+||+||+.++.
T Consensus 37 ~~~rnI~IiGhvd~GKTTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~E~ergiTi~~~~~~~~~~~~~inliDTPGh~df~ 116 (635)
T 4ZCI_A 37 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 116 (635)
T ss_dssp CCEEEEEEEECTTSCHHHHHHHHHHTSCC------------------------CCCSEEEEEETTEEEEEEECCCSSCCS
T ss_pred hhCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCccccceeeccchhhHhhCCcceeeEEEEEeCCeEEEEEeCCCcchhH
Confidence 4557899999999999999999886432110000 0 0 000 00011111123578999999999888
Q sequence1 71 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126 (184)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~ 126 (184)
..+...+..+|++++|+|+.+... ......+..... ...|+++++||+|+..
T Consensus 117 ~ev~~~l~~~D~aILVVDa~eg~~-~qt~~~l~~a~~---~~l~~IvviNKiD~~~ 168 (635)
T 4ZCI_A 117 GEVERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFA---YGLKPIVVINKVDRPG 168 (635)
T ss_dssp SHHHHHHTTCSEEEEEEETTTBSC-GGGHHHHHHHHH---TTCCEEEEEECTTSTT
T ss_pred HHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCcEEEEeCCCCCC
Confidence 778888889999999999876321 122222222221 2567889999999865
##### No 449 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2J3E_A T7I23.11 PROTEIN; ATTOC33(R130A), DIMERIZATION, GTPASE, PROTEIN TRANSPORT; HET: GDP; 3.2A {ARABIDOPSIS THALIANA}
Probab=99.00 E-value=4e-13 Score=95.46 Aligned_cols=122 Identities=15% Similarity=0.062 Sum_probs=70.5 Template_Neff=10.800
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYP------- 78 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~------- 78 (184)
....+|+++|..|+|||++++++.............................+.+||+||.............
T Consensus 33 ~~~~~i~v~G~~g~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~pG~~~~~~~~~~~~~~~~~~~~ 112 (249)
T 2J3E_A 33 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 112 (249)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHSSSCSCCCSCCSCCCSCEEEEEEETTEEEEEEECCCSBCSSSBCHHHHHHHHHHTS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCceecCCCCCCceeeEEEEEeeCCEEEEEEECCCCcCCCCCcHHHHHHHHHHHh
Confidence 5678999999999999999999987654322111100111111111123457889999997654322222222
Q sequence1 79 --DTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 127 (184)
Q Consensus 79 --~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~~vv~nK~D~~~~ 127 (184)
.+|++++|++.+...........+..+.... ....|+++++||.|....
T Consensus 113 ~~~~d~il~v~d~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 165 (249)
T 2J3E_A 113 NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 165 (249)
T ss_dssp SCCBCEEEEEEETTCCCCCTHHHHHHHHHHHHSCHHHHHTEEEEEECTTCCCT
T ss_pred cCCccEEEEEeeCCccCCCHHHHHHHHHHHHHHChhHHhcEEEEEeCccCCCC
Confidence 7899999999875321122211121111111 123789999999998764
##### No 450 #####
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>1ZUN_B Sulfate adenylyltransferase subunit 2 (E.C.2.7.7.4); beta barrel, switch domain, heterodimer; HET: GDP, AGS; 2.7A {Pseudomonas syringae} SCOP: b.43.3.1, c.37.1.8, b.44.1.1
Probab=98.99 E-value=4.2e-13 Score=102.74 Aligned_cols=158 Identities=17% Similarity=0.107 Sum_probs=88.3 Template_Neff=10.500
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP------------TVFENY--------------------VADIEVD 52 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~------------t~~~~~--------------------~~~~~~~ 52 (184)
..+.++|+++|..++|||||+++|+.......... .....+ .......
T Consensus 21 ~~~~~~i~i~G~~~sGKSTLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~ 100 (434)
T 1ZUN_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCCEEEEEEeCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCCchHHHHHHcCcHHHHhcCceeEeeeeEee
Confidence 45678999999999999999999876532110000 000000 0000111
Q sequence1 53 GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRR 132 (184)
Q Consensus 53 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~ 132 (184)
.....+.+||+||++.+...+...+..+|++++|+|........ . ......... ....++++++||+|+.......
T Consensus 101 ~~~~~~~iiD~pG~~~~~~~~~~~~~~~d~~ilvvd~~~~~~~~-~-~e~~~~~~~-~~~~~iivv~nK~D~~~~~~~~- 176 (434)
T 1ZUN_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-T-RRHSYIASL-LGIKHIVVAINKMDLNGFDERV- 176 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-H-HHHHHHHHH-TTCCEEEEEEECTTTTTSCHHH-
T ss_pred cCCceEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECCCCCCHH-H-HHHHHHHHH-hCCCEEEEEEeCCCCCCCCHHH-
Confidence 12346789999999888777777778899999999987532111 1 111111211 1234689999999987522110
Q sequence1 133 ELAKMKQEPVKPEEGRDMANRI----GAFGYMECSAKTKDGVREV 173 (184)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~~i~~~ 173 (184)
..... .....+.... ....++++|+.++.|+.++
T Consensus 177 -~~~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 214 (434)
T 1ZUN_B 177 -FESIK------ADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp -HHHHH------HHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred -HHHHH------HHHHHHHHHcCCCcccCeEEEcCCCCCcccccc
Confidence 00000 0000011111 1256788999999888764
##### No 451 #####
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>5IZL_A Selenocysteine-specific elongation factor; elongation factor, selenocysteine, selenocysteine tRNA; HET: GCP; 2.72A {Homo sapiens}
Probab=98.99 E-value=4.4e-13 Score=107.03 Aligned_cols=168 Identities=17% Similarity=0.174 Sum_probs=93.9 Template_Neff=8.800
Q sequence1 4 GSPIRKKLVIVGDGACGKTCLLIVNSKDQFP-------EVYVPTVFENY-VADIEV-----------------------D 52 (184)
Q Consensus 4 ~~~~~~~i~i~G~~~~GKtsli~~~~~~~~~-------~~~~~t~~~~~-~~~~~~-----------------------~ 52 (184)
.....++|+++|..++|||||+++|...... ........... ...+.. .
T Consensus 23 ~~~~~~~V~vlG~~~sGKSTLi~~L~~~~~~~~~d~~~~~~~~giTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (616)
T 5IZL_A 23 GRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPG 102 (616)
T ss_dssp CCEEEEEEEEEESSSSSHHHHHHHHHHHC-----------CCCCCCCSCEEEEEEEECCGGGGGGCC-----------CC
T ss_pred CCCccEEEEEEcCCCCCHHHHHHHHhcccchhhhhcChHHHHcCceeEecceeeecCCChHHhccChhhcCCCCCCCCCC
Confidence 3466789999999999999999999765211 00000000000 000000 1
Q sequence1 53 GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRR 132 (184)
Q Consensus 53 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~~~~~ 132 (184)
.....+.+||+||+..+...+......+|++++|+|++.....+.. +.+.. .. ....|+++++||+|+........
T Consensus 103 ~~~~~itliDtPGh~~~~~~~i~~~~~~D~~IlVvda~~g~~~qt~-e~l~~-~~--~~~~~iIvvlNK~Dl~~~~~~~~ 178 (616)
T 5IZL_A 103 EPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSA-ECLVI-GQ--IACQKLVVVLNKIDLLPEGKRQA 178 (616)
T ss_dssp CCEEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH-HHHHH-HH--HHCSEEEEEEECCTTSCSTTHHH
T ss_pred CCceEEEEEeCCCCHHHHHHHHHHHhhCCEEEEEEECCCCCChHHH-HHHHH-HH--HhCCEEEEEEecccCCChHHHHH
Confidence 1235789999999987766666667789999999998864321111 11211 11 12568999999999876322111
Q sequence1 133 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK----------DGVREVFEMATR 179 (184)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~----------~~i~~~~~~~~~ 179 (184)
.+......... .... ......+++++|+.++ .++..+++++..
T Consensus 179 ~~~~i~~~l~~--~l~~--~~~~~~~iv~vSa~~g~~~~~~~~~~~gi~~Ll~~L~~ 231 (616)
T 5IZL_A 179 AIDKMTKKMQK--TLEN--TKFRGAPIIPVAAKPGGPEAPETEAPQGIPELIELLTS 231 (616)
T ss_dssp HHHHHHHHHHH--HTSS--SSCTTCCEEECBSSCSCC----CCCCBSHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHc--cCCCCCCEEEeeCCCCCCCCCcccCCCCHHHHHHHHHh
Confidence 11111110000 0000 0111256788999887 677777776554
##### No 452 #####
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>3P26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational; 2.5A {Saccharomyces cerevisiae}
Probab=98.99 E-value=4.6e-13 Score=103.95 Aligned_cols=162 Identities=14% Similarity=0.143 Sum_probs=85.8 Template_Neff=10.200
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPE-------------------------------VYVPTVFENYVADIEVDG 53 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~ 53 (184)
....++|+++|..++|||||+++|+...... ......... ........
T Consensus 30 ~~~~~~i~vvG~~~sGKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~-~~~~~~~~ 108 (483)
T 3P26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVS-ICTSHFST 108 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCC-CCEEEEEC
T ss_pred cCCCeEEEEEeCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCchHHHHHhcCChhHHhcCeEEE-eeEeeeec
Confidence 3567899999999999999999987532100 000000000 00001111
Q sequence1 54 KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLEN------IPEKWTPEVKHFCPNVPIILVGNKKDLRND 127 (184)
Q Consensus 54 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~ 127 (184)
....+.+||+||+.++...+..+...+|++++|+|+... .+.. ....+....... ...++++++||+|+...
T Consensus 109 ~~~~i~liDtPG~~~~~~~~~~~~~~~d~~ilvvd~~~~-~~e~~~~~~~~~~~~l~~~~~~-~~~~iivv~nK~D~~~~ 186 (483)
T 3P26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN-AFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC-------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTT
T ss_pred CCceEEEEeCCCchHHHHHHHHHHhcCCEEEEEEECCCc-ccccCCCCChhHHHHHHHHHHh-CCCeEEEEEECccCCCc
Confidence 234678999999988877777777899999999998764 1111 111111111111 12348899999998753
Q sequence1 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREV 173 (184)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 173 (184)
... ......... . ..............++++|+.++.|+.++
T Consensus 187 ~~~--~~~~~~~~l-~-~~l~~~~~~~~~~~~i~iSa~~g~~i~~~ 228 (483)
T 3P26_A 187 SQQ--RFEEIKSKL-L-PYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp CHH--HHHHHHHHH-H-HHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred cHH--HHHHHHHHH-H-HHHHHcCCCccccEEEEccccCCCceeec
Confidence 211 000000000 0 00000000001246788999998888553
##### No 453 #####
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>3DEF_A T7I23.11 protein (E.C.3.6.5.2); chloroplast, Toc33, GTPase, HYDROLASE; HET: GDP; 1.96A {Arabidopsis thaliana}
Probab=98.98 E-value=5.1e-13 Score=95.72 Aligned_cols=122 Identities=15% Similarity=0.061 Sum_probs=70.2 Template_Neff=10.500
Q sequence1 6 PIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSY-------- 77 (184)
Q Consensus 6 ~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~-------- 77 (184)
....+|+++|..|+|||++++++.+...........................+.+||+||............
T Consensus 34 ~~~~~i~v~G~~g~GKSslin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~ 113 (262)
T 3DEF_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccccCCCCCCcceeEEEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999999998665432211111111111111122345789999999764322211111
Q sequence1 78 -PDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 127 (184)
Q Consensus 78 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~~vv~nK~D~~~~ 127 (184)
..++++++|++.+...........+..+.... ....|+++|+||.|....
T Consensus 114 ~~~~~~il~v~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 166 (262)
T 3DEF_A 114 NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred cCCCCEEEEEeeccccCCCHHHHHHHHHHHHHHChhhcCCEEEEEecHhhCCc
Confidence 26889999999875322222212222111111 124789999999998764
##### No 454 #####
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>3T34_B Dynamin-related protein 1A, LINKER, Dynamin-related; dynamin-like protein 1A, GTPase, membrane; HET: GDP, ALF; 2.405A {Arabidopsis thaliana, synthetic, Arabidopsis thaliana}
Probab=98.98 E-value=5.1e-13 Score=99.52 Aligned_cols=69 Identities=22% Similarity=0.190 Sum_probs=44.6 Template_Neff=11.300
Q sequence1 57 ELALWDTAGLED-------------YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 123 (184)
Q Consensus 57 ~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D 123 (184)
.+.+||+||... +......++..++++++|++.............+...+. ....|+++|+||+|
T Consensus 137 ~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiV~tk~D 214 (360)
T 3T34_B 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVD--PSGDRTFGVLTKID 214 (360)
T ss_dssp CCEEEECCCBCSSCCTTCCSTHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHHC--TTCTTEEEEEECGG
T ss_pred CeEEEeCCCCccCCCCCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCCCChhhchHHHHHHHhC--CCCCcEEEEEechh
Confidence 788999999753 234555667788999999987653211111112222221 23578999999999
Q sequence1 124 LRND 127 (184)
Q Consensus 124 ~~~~ 127 (184)
....
T Consensus 215 ~~~~ 218 (360)
T 3T34_B 215 LMDK 218 (360)
T ss_dssp GCCT
T ss_pred hcCC
Confidence 9864
##### No 455 #####
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>2QAG_C Septin-2, Septin-6, Septin-7; Cell cycle, Cell division, GTP-binding; HET: GDP, GTP; 4.0A {Homo sapiens}
Probab=98.97 E-value=6.2e-13 Score=101.50 Aligned_cols=160 Identities=15% Similarity=0.100 Sum_probs=66.8 Template_Neff=10.200
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-------V--ADIEVDGKQVELALWDTAGLEDYDR---- 71 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-------~--~~~~~~~~~~~~~i~D~~g~~~~~~---- 71 (184)
....++|+++|.+|+|||||++.|.+........+...... . ......+..+.+.+|||||......
T Consensus 28 ~~~~~~I~vvG~~g~GKSs~in~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtpG~~~~~~~~~~ 107 (418)
T 2QAG_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSC----C-CCE-----EEEE------EEEEEECC-----------
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCCCCccceEEEEEEEEEEeeCCEEEEEEEEeCCCCCCCCCcccc
Confidence 45678999999999999999999987654322111110000 0 0111122334589999999543210
Q sequence1 72 ----------LRPLSY-------------PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128 (184)
Q Consensus 72 ----------~~~~~~-------------~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~~ 128 (184)
.+..++ ..+++++++++.+... +......+...+ ....|+++|+||+|.....
T Consensus 108 ~~~i~~~i~~~~~~~~~~~~~~~r~~~~d~~~~~~l~~i~~~~~~-~~~~~~~~l~~l---~~~~~viiV~tK~D~~~~~ 183 (418)
T 2QAG_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRL---HEKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCCCCC---CCC-CCEEEEECCC-CCS-CCHHHHHHHHHH---TTTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchhhcccCCCceeEEEEEeCCCCCC-CCHHHHHHHHHH---hcCCCEEEEEeccCCCCHH
Confidence 001111 1277788887775322 222111122222 2358899999999987543
Q sequence1 129 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179 (184)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~ 179 (184)
........ ........ ...++.+|+..+.++..++.++..
T Consensus 184 ~~~~~~~~----------i~~~l~~~-~~~~~~~s~~~~~~~~~~~~~l~~ 223 (418)
T 2QAG_C 184 ECQQFKKQ----------IMKEIQEH-KIKIYEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp HHHHHHHH----------HHHHHHHH-TCCCCCCC----------------
T ss_pred HHHHHHHH----------HHHHHHHC-CCCeeeccccCCCChHHHHHHHHH
Confidence 21110000 00011111 245667777777666666555443
##### No 456 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>2OHF_A GTP-binding protein 9; ATPase GTPase P-loop; HET: ACP; 2.7A {Homo sapiens}
Probab=98.96 E-value=6.8e-13 Score=100.73 Aligned_cols=88 Identities=19% Similarity=0.127 Sum_probs=48.7 Template_Neff=9.200
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP-TVFENYVADIEVDGKQ---------------VELALWDTAGLE- 67 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~- 67 (184)
....++|+++|.+++|||||++.+++........+ ++.......+...+.. ..+.+||+||..
T Consensus 19 ~~~~~~I~ivG~~~~GKSTl~n~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 98 (396)
T 2OHF_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccCCcEEEEcCCCHHHHHHHhhcCCccccCcEEEEEEcCCCCC
Confidence 34568999999999999999999986544221111 1111111111221111 348899999973
Q sequence1 68 ------DYDRLRPLSYPDTDVILMCFSIDSP 92 (184)
Q Consensus 68 ------~~~~~~~~~~~~~~~~i~v~d~~~~ 92 (184)
.+...+...+..+|++++|+++.+.
T Consensus 99 ~~~~~~~~~~~~l~~ir~aD~ii~Vvd~~~~ 129 (396)
T 2OHF_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC---
T ss_pred CcccCcChHHHHHHHHhhCCEEEEEEecCCC
Confidence 2334455556789999999998753
##### No 457 #####
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>6MQ9_A Septin-12; cytoskeleton component septin GTPase spermatogenesis; HET: GNP; 1.86A {Homo sapiens}
Probab=98.96 E-value=7.6e-13 Score=96.57 Aligned_cols=120 Identities=16% Similarity=0.130 Sum_probs=69.2 Template_Neff=10.000
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-------N--YVADIEVDGKQVELALWDTAGLEDYDR---- 71 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~-------~--~~~~~~~~~~~~~~~i~D~~g~~~~~~---- 71 (184)
....++|+++|..|+|||||++++..........+.... . .......++..+.+.+||+||......
T Consensus 21 ~~~~~~I~vvG~~g~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~DtpG~~~~~~~~~~ 100 (295)
T 6MQ9_A 21 MGFEFNIMVVGQSGLGKSTMVNTLFKSKVWKSNPPGLGVPTPQTLQLHSLTHVIEEKGVKLKLTVTDTPGFGDQINNDNC 100 (295)
T ss_dssp --CEEEEEEEEBTTSSHHHHHHHHHHCTTSSCCCCC----CCCCCSCEEEEEEEEETTEEEEEEEEECCCBCCSSBCTTT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCeEEEEEEEEEEeeCCEEEEEEEEeCCCCCCCCCCccc
Confidence 456789999999999999999999876543221111100 0 011112223345789999999754321
Q sequence1 72 ----------LRPLSYPDT--------------DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 127 (184)
Q Consensus 72 ----------~~~~~~~~~--------------~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~ 127 (184)
.+..++... |++++|++.+......... .+.+.+ ....|+++|+||+|....
T Consensus 101 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~~~~~i~~~l~vi~~~~~~~~~~~~-~~l~~l---~~~~~vi~Vi~K~D~~~~ 176 (295)
T 6MQ9_A 101 WDPILGYINEQYEQYLQEEILITRQRHIPDTRVHCCVYFVPPTGHCLRPLDI-EFLQRL---CRTVNVVPVIARADSLTM 176 (295)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHCCGGGCCCCCCCEEEEEECCCSSCCCHHHH-HHHHHH---HTTSCEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCceeEEEEEeCCCCCCCCHHHH-HHHHHH---hhcCCeEEEEeccCCCCH
Confidence 222233322 8999998886543222221 222222 234889999999999764
Q sequence1 128 E 128 (184)
Q Consensus 128 ~ 128 (184)
.
T Consensus 177 ~ 177 (295)
T 6MQ9_A 177 E 177 (295)
T ss_dssp H
T ss_pred H
Confidence 3
##### No 458 #####
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View 3D template structure (matched region->red, rest of chain->pink, other chains->grey)
>6MQB_A Septin-12; cytoskeleton component septin GTPase spermatogenesis; HET: GNP; 2.12A {Homo sapiens}
Probab=98.96 E-value=7.6e-13 Score=96.57 Aligned_cols=120 Identities=16% Similarity=0.130 Sum_probs=69.4 Template_Neff=10.000
Q sequence1 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-------N--YVADIEVDGKQVELALWDTAGLEDYDR---- 71 (184)
Q Consensus 5 ~~~~~~i~i~G~~~~GKtsli~~~~~~~~~~~~~~t~~~-------~--~~~~~~~~~~~~~~~i~D~~g~~~~~~---- 71 (184)
....++|+++|..|+|||||++++..........+.... . .......++..+.+.+||+||......
T Consensus 21 ~~~~~~I~vvG~~g~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~DtpG~~~~~~~~~~ 100 (295)
T 6MQB_A 21 MGFEFNIMVVGQSGLGKSTMVNTLFKSKVWKSNPPGLGVPTPQTLQLHSLTHVIEEKGVKLKLTVTDTPGFGDQINNDNC 100 (295)
T ss_dssp --CEEEEEEEEBTTSSHHHHHHHHHTCTTSSCCCCCCCSCCCCCCSCEEEEEEEEETTEEEEEEEEECCCBCCSSCCTTT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCeEEEEEEEEEEeeCCEEEEEEEEeCCCCCCCCCCccc
Confidence 456789999999999999999999876543221111100 0 011112223345789999999754321
Q sequence1 72 ----------LRPLSYPDT--------------DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 127 (184)
Q Consensus 72 ----------~~~~~~~~~--------------~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~vv~nK~D~~~~ 127 (184)
.+..++... |++++|++.+......... .+.+.+ ....|+++|+||+|....
T Consensus 101 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~~~~~i~~~l~vi~~~~~~~~~~~~-~~l~~l---~~~~~vi~Vi~K~D~~~~ 176 (295)
T 6MQB_A 101 WDPILGYINEQYEQYLQEEILITRQRHIPDTRVHCCVYFVPPTGHCLRPLDI-EFLQRL---CRTVNVVPVIARADSLTM 176 (295)
T ss_dssp THHHHHHHHHHHHHHHHHHSCTTCCSSCCCCCCCEEEEEECCCSSCCCHHHH-HHHHHH---TTTSCEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCceeEEEEEeCCCCCCCCHHHH-HHHHHH---hhcCCeEEEEeccCCCCH
Confidence 222233322 8999998886543222221 222222 234889999999999764
Q sequence1 128 E 128 (184)
Q Consensus 128 ~ 128 (184)
.
T Consensus 177 ~ 177 (295)
T 6MQB_A 177 E 177 (295)
T ss_dssp H
T ss_pred H
Confidence 3